Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037140 | XP_024641213.1 | 98.592 | 355 | 5 | 0 | 1 | 355 | 1 | 355 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037140 | Msa0084360 | 0.897007 | 2.134107e-76 | -8.615850e-47 |
| Msa0037140 | Msa0131310 | 0.902885 | 6.134873e-79 | -8.615850e-47 |
| Msa0037140 | Msa0177240 | 0.989696 | 3.029034e-179 | -8.615850e-47 |
| Msa0037140 | Msa1078960 | 0.818589 | 1.811486e-52 | -8.615850e-47 |
| Msa0037140 | Msa1123960 | 0.817748 | 2.807798e-52 | -8.615850e-47 |
| Msa0037140 | Msa1426100 | 0.826875 | 2.134090e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037140 | MtrunA17_Chr1g0200031 | 98.592 | 355 | 5 | 0 | 1 | 355 | 1 | 355 | 0.0 | 716 |
| Msa0037140 | MtrunA17_Chr5g0409401 | 58.967 | 368 | 127 | 8 | 1 | 355 | 1 | 357 | 9.03e-134 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037140 | AT4G25030.1 | 66.082 | 342 | 95 | 7 | 12 | 351 | 15 | 337 | 4.99e-145 | 414 |
| Msa0037140 | AT4G25030.2 | 66.082 | 342 | 95 | 7 | 12 | 351 | 15 | 337 | 4.99e-145 | 414 |
| Msa0037140 | AT5G45410.3 | 68.182 | 286 | 86 | 4 | 10 | 294 | 10 | 291 | 1.30e-116 | 342 |
| Msa0037140 | AT5G45410.4 | 68.182 | 286 | 86 | 4 | 10 | 294 | 10 | 291 | 1.30e-116 | 342 |
| Msa0037140 | AT5G45410.2 | 68.182 | 286 | 86 | 4 | 10 | 294 | 10 | 291 | 1.30e-116 | 342 |
| Msa0037140 | AT5G45410.1 | 68.182 | 286 | 86 | 4 | 10 | 294 | 10 | 291 | 1.30e-116 | 342 |
| Msa0037140 | AT5G45410.5 | 68.182 | 286 | 86 | 4 | 10 | 294 | 10 | 291 | 1.30e-116 | 342 |
Find 124 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTATTGCAGCATCAATTT+TGG | 0.095240 | 1_1:-66056756 | Msa0037140:CDS |
| CCTAAATGCCAAATCAAAAT+TGG | 0.158845 | 1_1:+66057773 | None:intergenic |
| TTTGGATTTGGCGGGCCTTT+TGG | 0.239971 | 1_1:-66057615 | Msa0037140:CDS |
| GGCAATGACTGGCTGCAAAA+TGG | 0.280298 | 1_1:-66057127 | Msa0037140:CDS |
| CCGACAAAAGTTCTTGTGAT+TGG | 0.288665 | 1_1:-66056932 | Msa0037140:CDS |
| CACTGGCGAAAGATAAATAA+TGG | 0.293534 | 1_1:-66056226 | Msa0037140:three_prime_UTR |
| ATTAGTAATAAGTAAATAAA+AGG | 0.298787 | 1_1:-66056322 | Msa0037140:three_prime_UTR |
| TGTTGGTTCGGTTCAGTTAC+CGG | 0.302078 | 1_1:-66056615 | Msa0037140:CDS |
| TGTTGGTTCGGTTCAGTTAC+CGG | 0.302078 | 1_1:-66056651 | Msa0037140:CDS |
| CTTCTCATTTGTTTCACCTT+TGG | 0.302572 | 1_1:-66058213 | Msa0037140:CDS |
| AATTGGGACTTCGGAGCTTC+AGG | 0.308144 | 1_1:+66057681 | None:intergenic |
| CTTTGGTTGTTATATGCATT+TGG | 0.313434 | 1_1:-66059374 | Msa0037140:five_prime_UTR |
| AAAGATAAATAATGGGAATA+TGG | 0.334003 | 1_1:-66056218 | Msa0037140:three_prime_UTR |
| ACTATTAGCCTGTCATCATT+TGG | 0.343341 | 1_1:-66057633 | Msa0037140:CDS |
| TTGCAGCCAAAGGATTGAAT+TGG | 0.344637 | 1_1:+66057664 | None:intergenic |
| ATGATTCAAATTTCAAATAC+AGG | 0.349419 | 1_1:-66056144 | Msa0037140:three_prime_UTR |
| AGCCTGTCATCATTTGGATT+TGG | 0.362493 | 1_1:-66057627 | Msa0037140:CDS |
| AGAAGCTGGATTCCACTTAA+TGG | 0.381452 | 1_1:+66056556 | None:intergenic |
| TCACTTTCTCTCTCTACAAT+TGG | 0.388789 | 1_1:-66059153 | Msa0037140:five_prime_UTR |
| GTAAATGCCATCGCTGATTT+AGG | 0.392350 | 1_1:+66056776 | None:intergenic |
| GATGGCAGTTAATGTTCCCC+TGG | 0.396744 | 1_1:-66056900 | Msa0037140:CDS |
| CTGATACAAAACTATTGTAT+TGG | 0.401755 | 1_1:-66056299 | Msa0037140:three_prime_UTR |
| CTGAAAAGTTCTCTCAGATA+AGG | 0.401980 | 1_1:+66057722 | None:intergenic |
| CAGCTCTGGAGCCGATTACT+TGG | 0.406356 | 1_1:+66056732 | None:intergenic |
| TTATGAATGAAAGTCAATTA+TGG | 0.409721 | 1_1:+66059335 | None:intergenic |
| CTGTCATCATTTGGATTTGG+CGG | 0.417300 | 1_1:-66057624 | Msa0037140:CDS |
| GCCTGGTATGACTTTGCAAT+CGG | 0.418038 | 1_1:+66057097 | None:intergenic |
| GCAATGACTGGCTGCAAAAT+GGG | 0.421902 | 1_1:-66057126 | Msa0037140:CDS |
| TGAAACAAATGAGAAGTTAG+TGG | 0.421939 | 1_1:+66058220 | None:intergenic |
| TGAAACTTCTGATGTTGGTT+CGG | 0.422639 | 1_1:-66056663 | Msa0037140:CDS |
| GAAGTCCCAATTCAATCCTT+TGG | 0.425420 | 1_1:-66057670 | Msa0037140:CDS |
| CAGAATAGTATAAGCCTTTG+AGG | 0.427218 | 1_1:+66056249 | None:intergenic |
| TGCAGCCAAAGGATTGAATT+GGG | 0.428925 | 1_1:+66057665 | None:intergenic |
| AGAGAGATATAATCTGCAAT+AGG | 0.429507 | 1_1:+66059226 | None:intergenic |
| TTAATGTTCCCCTGGGTGTA+TGG | 0.431929 | 1_1:-66056892 | Msa0037140:CDS |
| TTCACATTGAATGCCTCGGC+TGG | 0.435968 | 1_1:-66056418 | Msa0037140:three_prime_UTR |
| CGGTGCGTGCTATAGCCGCC+CGG | 0.447654 | 1_1:+66056987 | None:intergenic |
| TTACATTTGAAGCAGAAGAA+TGG | 0.449897 | 1_1:-66058312 | Msa0037140:exon |
| CCGAGGCATTCAATGTGAAA+AGG | 0.453832 | 1_1:+66056422 | None:intergenic |
| AGTTCTTGTGATTGGAATGA+TGG | 0.455110 | 1_1:-66056924 | Msa0037140:CDS |
| GGTTAAACCTGATGTTGGTT+CGG | 0.456336 | 1_1:-66056627 | Msa0037140:CDS |
| TCCTTAGGTGTCCTTTCTTG+AGG | 0.456558 | 1_1:-66058256 | Msa0037140:CDS |
| GCAATTGAAACTTCTGATGT+TGG | 0.457076 | 1_1:-66056668 | Msa0037140:CDS |
| TTCCTAAGCATTGCTATGAA+TGG | 0.459333 | 1_1:+66056812 | None:intergenic |
| CACAGGTAATAGTTGAGGCC+CGG | 0.459547 | 1_1:-66057006 | Msa0037140:CDS |
| GAGCACATTACATTCAACTT+TGG | 0.460143 | 1_1:-66059391 | Msa0037140:five_prime_UTR |
| AGCATGAGGCAGGCAATGAC+TGG | 0.466015 | 1_1:-66057138 | Msa0037140:CDS |
| TCATTAATGTTCCTCAAGAA+AGG | 0.472024 | 1_1:+66058245 | None:intergenic |
| AGAGGAAAACTTACAGGCAT+TGG | 0.472621 | 1_1:+66058185 | None:intergenic |
| TTAACGAGGATTCTATCCTT+AGG | 0.473812 | 1_1:-66058271 | Msa0037140:CDS |
| CTAAATGCCAAATCAAAATT+GGG | 0.475015 | 1_1:+66057774 | None:intergenic |
| ATTCAATCCTTTGGCTGCAA+AGG | 0.488211 | 1_1:-66057661 | Msa0037140:CDS |
| TGAAAAGTTCTCTCAGATAA+GGG | 0.490749 | 1_1:+66057723 | None:intergenic |
| ACTGGCGAAAGATAAATAAT+GGG | 0.491311 | 1_1:-66056225 | Msa0037140:three_prime_UTR |
| TTGCAGCAACCGCCTTCAAA+CGG | 0.498713 | 1_1:+66056702 | None:intergenic |
| CGAGGCATTCAATGTGAAAA+GGG | 0.498915 | 1_1:+66056423 | None:intergenic |
| AGCTGAGAGGTACCGTTTGA+AGG | 0.501698 | 1_1:-66056714 | Msa0037140:CDS |
| GCTGTCAGCTGAAGAGAAGC+TGG | 0.505469 | 1_1:+66056542 | None:intergenic |
| CGCCAAATCCAAATGATGAC+AGG | 0.507367 | 1_1:+66057625 | None:intergenic |
| CACTTGTATTTCATACCGGC+AGG | 0.508980 | 1_1:+66057031 | None:intergenic |
| TGTCATCATTTGGATTTGGC+GGG | 0.510171 | 1_1:-66057623 | Msa0037140:CDS |
| TTCCATTCATAGCAATGCTT+AGG | 0.510376 | 1_1:-66056814 | Msa0037140:CDS |
| ACAGGTAATAGTTGAGGCCC+GGG | 0.513811 | 1_1:-66057005 | Msa0037140:CDS |
| ACACAGGCGCGTGCAGCTAA+AGG | 0.515194 | 1_1:-66057816 | Msa0037140:intron |
| ATTCATTACTTCATCCTCAA+AGG | 0.518038 | 1_1:-66056263 | Msa0037140:three_prime_UTR |
| GTTCTTGTGATTGGAATGAT+GGG | 0.518850 | 1_1:-66056923 | Msa0037140:CDS |
| CCTGGTATGACTTTGCAATC+GGG | 0.521178 | 1_1:+66057098 | None:intergenic |
| CCCGATTGCAAAGTCATACC+AGG | 0.522281 | 1_1:-66057098 | Msa0037140:CDS |
| GATGGTTCGAAGCATGAGGC+AGG | 0.526953 | 1_1:-66057148 | Msa0037140:CDS |
| TGAAATGAGTCGAAACCAAA+AGG | 0.527749 | 1_1:+66057600 | None:intergenic |
| AACTGAACCGAACCAACATC+AGG | 0.528631 | 1_1:+66056620 | None:intergenic |
| ACACTGTATACCTTTGAAGA+AGG | 0.529403 | 1_1:+66057528 | None:intergenic |
| CTGTCTTTAGATTTAACCAC+CGG | 0.531229 | 1_1:+66056596 | None:intergenic |
| CAAACGGTACCTCTCAGCTC+TGG | 0.535101 | 1_1:+66056718 | None:intergenic |
| CCGGTGGTTAAACCTGATGT+TGG | 0.535233 | 1_1:-66056632 | Msa0037140:CDS |
| ATGGCAGTTAATGTTCCCCT+GGG | 0.538720 | 1_1:-66056899 | Msa0037140:CDS |
| GTTGCTGCCTTTGCAGCCAA+AGG | 0.541299 | 1_1:+66057654 | None:intergenic |
| AGTGCTTCCACTTGTAGCAA+AGG | 0.545580 | 1_1:-66057065 | Msa0037140:CDS |
| CGGGCCTCAACTATTACCTG+TGG | 0.551578 | 1_1:+66057007 | None:intergenic |
| TCGACTCATTTCATGAGAAG+TGG | 0.551742 | 1_1:-66057590 | Msa0037140:CDS |
| AAGGTTATTCAGCCTCCTGC+CGG | 0.551898 | 1_1:-66057046 | Msa0037140:CDS |
| TGGGCACTTGTATTTCATAC+CGG | 0.555676 | 1_1:+66057027 | None:intergenic |
| GAAACAAATGAGAAGTTAGT+GGG | 0.556799 | 1_1:+66058221 | None:intergenic |
| AAAGGATTGAATTGGGACTT+CGG | 0.558670 | 1_1:+66057672 | None:intergenic |
| AGTAACAAAATACACACTCA+AGG | 0.560552 | 1_1:+66056446 | None:intergenic |
| AGAAAACAATTTGCCAGCCG+AGG | 0.575808 | 1_1:+66056405 | None:intergenic |
| GGGTGTATGGAGAGAACATA+CGG | 0.582703 | 1_1:-66056879 | Msa0037140:CDS |
| AATTAAAGCAAAGAATGAGA+TGG | 0.588142 | 1_1:+66059193 | None:intergenic |
| AGGCTTATACTATTCTGCAC+TGG | 0.589755 | 1_1:-66056243 | Msa0037140:three_prime_UTR |
| TCCTCAAGAAAGGACACCTA+AGG | 0.590715 | 1_1:+66058255 | None:intergenic |
| CGGTGGTTAAATCTAAAGAC+AGG | 0.591640 | 1_1:-66056595 | Msa0037140:CDS |
| AGACAGGCACTGTGGTGATG+AGG | 0.596413 | 1_1:-66056579 | Msa0037140:CDS |
| GGTGCGTGCTATAGCCGCCC+GGG | 0.604464 | 1_1:+66056988 | None:intergenic |
| GAACTACACCATCACTCCCA+TGG | 0.605433 | 1_1:+66057745 | None:intergenic |
| TGAATAACCTTTGCTACAAG+TGG | 0.606471 | 1_1:+66057058 | None:intergenic |
| ATGTTCTCTCCATACACCCA+GGG | 0.609222 | 1_1:+66056883 | None:intergenic |
| GAAGCACTTTACTAACAGCC+TGG | 0.611395 | 1_1:+66057080 | None:intergenic |
| GGGCCTCAACTATTACCTGT+GGG | 0.612298 | 1_1:+66057008 | None:intergenic |
| AAAGCAAAGAATGAGATGGT+AGG | 0.615145 | 1_1:+66059197 | None:intergenic |
| GCGGAGATTCTTTGCAAATG+CGG | 0.615724 | 1_1:+66056967 | None:intergenic |
| TTGTATTTCATACCGGCAGG+AGG | 0.618213 | 1_1:+66057034 | None:intergenic |
| TATGTTCTCTCCATACACCC+AGG | 0.620444 | 1_1:+66056882 | None:intergenic |
| AATTGTAGAGAGAGAAAGTG+AGG | 0.626640 | 1_1:+66059155 | None:intergenic |
| TCAGGATGGTTCGAAGCATG+AGG | 0.627100 | 1_1:-66057152 | Msa0037140:intron |
| CTTGATGCCTAAATCAGCGA+TGG | 0.629945 | 1_1:-66056783 | Msa0037140:CDS |
| TGTGATTGGAATGATGGGGA+TGG | 0.631056 | 1_1:-66056918 | Msa0037140:CDS |
| TGTCTCTTGCAATCTCCGAA+AGG | 0.632458 | 1_1:-66059126 | Msa0037140:intron |
| CTATGAATGGAACAGCTGCA+TGG | 0.632725 | 1_1:+66056825 | None:intergenic |
| GTAACAAAATACACACTCAA+GGG | 0.636352 | 1_1:+66056447 | None:intergenic |
| GTGGTGATGAGGCCATTAAG+TGG | 0.636840 | 1_1:-66056568 | Msa0037140:CDS |
| TATGAAATACAAGTGCCCAC+AGG | 0.637852 | 1_1:-66057023 | Msa0037140:CDS |
| CCAACATCAGGTTTAACCAC+CGG | 0.638938 | 1_1:+66056632 | None:intergenic |
| GTGCCCACAGGTAATAGTTG+AGG | 0.641293 | 1_1:-66057011 | Msa0037140:CDS |
| ACAGGCATTGGAAAAGCCAA+AGG | 0.643414 | 1_1:+66058197 | None:intergenic |
| CTTTGCTAGAGATATTAACG+AGG | 0.673726 | 1_1:-66058285 | Msa0037140:CDS |
| TGAGAGGTACCGTTTGAAGG+CGG | 0.674519 | 1_1:-66056711 | Msa0037140:CDS |
| TGGACAGCGACAAACCATGA+CGG | 0.683212 | 1_1:+66056845 | None:intergenic |
| TGGTTCGGTTCAGTTACCGG+TGG | 0.691322 | 1_1:-66056612 | Msa0037140:CDS |
| TGGTTCGGTTCAGTTACCGG+TGG | 0.691322 | 1_1:-66056648 | Msa0037140:CDS |
| TAATCGGCTCCAGAGCTGAG+AGG | 0.712400 | 1_1:-66056727 | Msa0037140:CDS |
| TTCTTGTGATTGGAATGATG+GGG | 0.717293 | 1_1:-66056922 | Msa0037140:CDS |
| AAATCTAAAGACAGGCACTG+TGG | 0.728626 | 1_1:-66056587 | Msa0037140:CDS |
| GGTAATAGTTGAGGCCCGGG+CGG | 0.745364 | 1_1:-66057002 | Msa0037140:CDS |
| TGTTCTCTCCATACACCCAG+GGG | 0.753131 | 1_1:+66056884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTATTTTTTTAAGAT+AGG | + | chr1_1:66058272-66058291 | None:intergenic | 10.0% |
| !! | ATTAGTAATAAGTAAATAAA+AGG | - | chr1_1:66059210-66059229 | Msa0037140:five_prime_UTR | 10.0% |
| !! | AAATTATCACATAAAAAAAG+AGG | + | chr1_1:66056586-66056605 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTATGTGATAATT+TGG | - | chr1_1:66056585-66056604 | Msa0037140:CDS | 15.0% |
| !!! | TCATATGTTTTGAATTTAAT+AGG | - | chr1_1:66056640-66056659 | Msa0037140:CDS | 15.0% |
| !!! | TAAATTGTTATTGTTTAGAA+AGG | - | chr1_1:66056686-66056705 | Msa0037140:CDS | 15.0% |
| !!! | AAATTGTTATTGTTTAGAAA+GGG | - | chr1_1:66056687-66056706 | Msa0037140:CDS | 15.0% |
| !! | ATATCAGTTTATTAAATAAC+AGG | + | chr1_1:66057678-66057697 | None:intergenic | 15.0% |
| !! | AAAATTAAAATCAAGTTACT+AGG | + | chr1_1:66058120-66058139 | None:intergenic | 15.0% |
| !!! | GTTTAATTTAATTGATATTC+AGG | - | chr1_1:66058362-66058381 | Msa0037140:intron | 15.0% |
| !! | TTATGAATGAAAGTCAATTA+TGG | + | chr1_1:66056200-66056219 | None:intergenic | 20.0% |
| !!! | AATTGTTATTGTTTAGAAAG+GGG | - | chr1_1:66056688-66056707 | Msa0037140:CDS | 20.0% |
| !! | TTGAATGTAGAAAATGTATT+GGG | - | chr1_1:66056711-66056730 | Msa0037140:CDS | 20.0% |
| !!! | CAGAATTGATTTAAAATGTT+TGG | + | chr1_1:66057034-66057053 | None:intergenic | 20.0% |
| !!! | AATTTACAATAATCGCTTTT+TGG | + | chr1_1:66057506-66057525 | None:intergenic | 20.0% |
| !!! | ATTATAACTTGTTAAGTAAC+CGG | + | chr1_1:66057578-66057597 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATGAAAAATTG+TGG | - | chr1_1:66058210-66058229 | Msa0037140:CDS | 20.0% |
| !! | AATTTAATTGATATTCAGGA+TGG | - | chr1_1:66058366-66058385 | Msa0037140:intron | 20.0% |
| !!! | AAAGATAAATAATGGGAATA+TGG | - | chr1_1:66059314-66059333 | Msa0037140:five_prime_UTR | 20.0% |
| !! | ATGATTCAAATTTCAAATAC+AGG | - | chr1_1:66059388-66059407 | Msa0037140:five_prime_UTR | 20.0% |
| ! | AATTAAAGCAAAGAATGAGA+TGG | + | chr1_1:66056342-66056361 | None:intergenic | 25.0% |
| ! | AAAGATAGATAGATACCTTT+CGG | + | chr1_1:66056424-66056443 | None:intergenic | 25.0% |
| ! | TCACATAAAAAAAGAGGATT+GGG | + | chr1_1:66056580-66056599 | None:intergenic | 25.0% |
| ! | ATCACATAAAAAAAGAGGAT+TGG | + | chr1_1:66056581-66056600 | None:intergenic | 25.0% |
| !! | GAAACTTTTCAACAATAACA+TGG | + | chr1_1:66056613-66056632 | None:intergenic | 25.0% |
| ! | TAATAGGTGAATTTATGAAC+TGG | - | chr1_1:66056656-66056675 | Msa0037140:CDS | 25.0% |
| ! | AATAGGTGAATTTATGAACT+GGG | - | chr1_1:66056657-66056676 | Msa0037140:CDS | 25.0% |
| ! | GTTGAATGTAGAAAATGTAT+TGG | - | chr1_1:66056710-66056729 | Msa0037140:CDS | 25.0% |
| !!! | TTTCATTGAGTTGACTTTTA+TGG | - | chr1_1:66056737-66056756 | Msa0037140:CDS | 25.0% |
| ! | TTATATGTTAGAACTTCTAG+TGG | - | chr1_1:66056772-66056791 | Msa0037140:CDS | 25.0% |
| ! | AATAAGAAAGAAACTCATCA+TGG | + | chr1_1:66057176-66057195 | None:intergenic | 25.0% |
| ! | TTTACTTTAGTCTGCATATA+TGG | - | chr1_1:66057396-66057415 | Msa0037140:intron | 25.0% |
| ! | TAAATTAAAGCTTCTGTTCT+GGG | - | chr1_1:66057520-66057539 | Msa0037140:intron | 25.0% |
| !!! | TTTTTTTAATCTCCATGTTC+CGG | - | chr1_1:66057556-66057575 | Msa0037140:CDS | 25.0% |
| ! | CTAAATGCCAAATCAAAATT+GGG | + | chr1_1:66057761-66057780 | None:intergenic | 25.0% |
| ! | AAAAAAAGAACCTTCTTCAA+AGG | - | chr1_1:66057994-66058013 | Msa0037140:intron | 25.0% |
| !!! | TTTTAATTTTCCCTTTCTAG+AGG | - | chr1_1:66058130-66058149 | Msa0037140:intron | 25.0% |
| !!! | TTTAATTTTCCCTTTCTAGA+GGG | - | chr1_1:66058131-66058150 | Msa0037140:intron | 25.0% |
| ! | AAACTAAGTAATTGCTTAGT+TGG | - | chr1_1:66058162-66058181 | Msa0037140:intron | 25.0% |
| ! | AACTAAGTAATTGCTTAGTT+GGG | - | chr1_1:66058163-66058182 | Msa0037140:intron | 25.0% |
| !! | TAGTATTTTCTCTTTTACCA+GGG | + | chr1_1:66058242-66058261 | None:intergenic | 25.0% |
| !! | TTAGTATTTTCTCTTTTACC+AGG | + | chr1_1:66058243-66058262 | None:intergenic | 25.0% |
| ! | CTGATACAAAACTATTGTAT+TGG | - | chr1_1:66059233-66059252 | Msa0037140:five_prime_UTR | 25.0% |
| !!! | TTTTTTTTTTTGTGTGTGTG+TGG | - | chr1_1:66059360-66059379 | Msa0037140:five_prime_UTR | 25.0% |
| CTTTGGTTGTTATATGCATT+TGG | - | chr1_1:66056158-66056177 | Msa0037140:three_prime_UTR | 30.0% | |
| AGAGAGATATAATCTGCAAT+AGG | + | chr1_1:66056309-66056328 | None:intergenic | 30.0% | |
| ! | GATCCATATTTTCTTCATCT+GGG | - | chr1_1:66056542-66056561 | Msa0037140:CDS | 30.0% |
| CACATAAAAAAAGAGGATTG+GGG | + | chr1_1:66056579-66056598 | None:intergenic | 30.0% | |
| TGGTGTGAATTAATGCAATT+TGG | - | chr1_1:66056792-66056811 | Msa0037140:CDS | 30.0% | |
| GGTGTGAATTAATGCAATTT+GGG | - | chr1_1:66056793-66056812 | Msa0037140:CDS | 30.0% | |
| ATTAAAACTGATTGAGCTGA+AGG | - | chr1_1:66056890-66056909 | Msa0037140:CDS | 30.0% | |
| TCTAACATGAAGCTAGAATT+TGG | + | chr1_1:66056972-66056991 | None:intergenic | 30.0% | |
| ! | TGCAGTTGTAGAATCAATTT+TGG | - | chr1_1:66057052-66057071 | Msa0037140:CDS | 30.0% |
| !!! | AATTTTGGCTCATCTAAAAG+TGG | - | chr1_1:66057067-66057086 | Msa0037140:CDS | 30.0% |
| CTAAAAGTGGTACAAAACAT+AGG | - | chr1_1:66057080-66057099 | Msa0037140:CDS | 30.0% | |
| GTCATTGAAACAAATCAACA+AGG | + | chr1_1:66057146-66057165 | None:intergenic | 30.0% | |
| ATTATAATTCCCCTTTGTGT+AGG | - | chr1_1:66057193-66057212 | Msa0037140:intron | 30.0% | |
| ! | TTACATTTGAAGCAGAAGAA+TGG | - | chr1_1:66057220-66057239 | Msa0037140:intron | 30.0% |
| TCATTAATGTTCCTCAAGAA+AGG | + | chr1_1:66057290-66057309 | None:intergenic | 30.0% | |
| GAAACAAATGAGAAGTTAGT+GGG | + | chr1_1:66057314-66057333 | None:intergenic | 30.0% | |
| TGAAACAAATGAGAAGTTAG+TGG | + | chr1_1:66057315-66057334 | None:intergenic | 30.0% | |
| TTTATGAGCAAAGATATGAC+AGG | + | chr1_1:66057458-66057477 | None:intergenic | 30.0% | |
| GTAAATTAAAGCTTCTGTTC+TGG | - | chr1_1:66057519-66057538 | Msa0037140:intron | 30.0% | |
| GTGAAATTGTCCACAATTTA+TGG | - | chr1_1:66057601-66057620 | Msa0037140:CDS | 30.0% | |
| !! | AAAGGTCCAATTTTTGAAGA+TGG | - | chr1_1:66057734-66057753 | Msa0037140:CDS | 30.0% |
| CCTAAATGCCAAATCAAAAT+TGG | + | chr1_1:66057762-66057781 | None:intergenic | 30.0% | |
| !!! | CCAATTTTGATTTGGCATTT+AGG | - | chr1_1:66057759-66057778 | Msa0037140:CDS | 30.0% |
| TGAAAAGTTCTCTCAGATAA+GGG | + | chr1_1:66057812-66057831 | None:intergenic | 30.0% | |
| !!! | AGGACTTGGATTTTTTATTC+TGG | + | chr1_1:66057973-66057992 | None:intergenic | 30.0% |
| !!! | TGAAGAAGGTTCTTTTTTTG+AGG | + | chr1_1:66057993-66058012 | None:intergenic | 30.0% |
| TCCTTTCATGGAAAATAACT+AGG | + | chr1_1:66058055-66058074 | None:intergenic | 30.0% | |
| ! | TACTATTGCAGCATCAATTT+TGG | - | chr1_1:66058776-66058795 | Msa0037140:intron | 30.0% |
| ! | ACTATTGCAGCATCAATTTT+GGG | - | chr1_1:66058777-66058796 | Msa0037140:intron | 30.0% |
| ! | CAACTGATGTATTTTGTTGA+TGG | - | chr1_1:66059021-66059040 | Msa0037140:intron | 30.0% |
| GTAACAAAATACACACTCAA+GGG | + | chr1_1:66059088-66059107 | None:intergenic | 30.0% | |
| AGTAACAAAATACACACTCA+AGG | + | chr1_1:66059089-66059108 | None:intergenic | 30.0% | |
| ATTCATTACTTCATCCTCAA+AGG | - | chr1_1:66059269-66059288 | Msa0037140:five_prime_UTR | 30.0% | |
| ACTGGCGAAAGATAAATAAT+GGG | - | chr1_1:66059307-66059326 | Msa0037140:five_prime_UTR | 30.0% | |
| GAGCACATTACATTCAACTT+TGG | - | chr1_1:66056141-66056160 | Msa0037140:three_prime_UTR | 35.0% | |
| AAAGCAAAGAATGAGATGGT+AGG | + | chr1_1:66056338-66056357 | None:intergenic | 35.0% | |
| AATTGTAGAGAGAGAAAGTG+AGG | + | chr1_1:66056380-66056399 | None:intergenic | 35.0% | |
| TCACTTTCTCTCTCTACAAT+TGG | - | chr1_1:66056379-66056398 | Msa0037140:three_prime_UTR | 35.0% | |
| !! | GCTTCTACGTTAAAGCATTT+TGG | - | chr1_1:66056520-66056539 | Msa0037140:CDS | 35.0% |
| ! | GGATCCATATTTTCTTCATC+TGG | - | chr1_1:66056541-66056560 | Msa0037140:CDS | 35.0% |
| TCACCCAGATGAAGAAAATA+TGG | + | chr1_1:66056548-66056567 | None:intergenic | 35.0% | |
| ATGTAACAGACCTACACAAA+GGG | + | chr1_1:66057206-66057225 | None:intergenic | 35.0% | |
| AATGTAACAGACCTACACAA+AGG | + | chr1_1:66057207-66057226 | None:intergenic | 35.0% | |
| CTTTGCTAGAGATATTAACG+AGG | - | chr1_1:66057247-66057266 | Msa0037140:intron | 35.0% | |
| TTAACGAGGATTCTATCCTT+AGG | - | chr1_1:66057261-66057280 | Msa0037140:intron | 35.0% | |
| CTTCTCATTTGTTTCACCTT+TGG | - | chr1_1:66057319-66057338 | Msa0037140:intron | 35.0% | |
| ATTCTCAAATAACTGCTCAG+TGG | + | chr1_1:66057431-66057450 | None:intergenic | 35.0% | |
| CAAGATAGCACCATAAATTG+TGG | + | chr1_1:66057614-66057633 | None:intergenic | 35.0% | |
| TTACGAATCATCTCTTACAC+AGG | - | chr1_1:66057700-66057719 | Msa0037140:CDS | 35.0% | |
| TTGGGACCATCTTCAAAAAT+TGG | + | chr1_1:66057743-66057762 | None:intergenic | 35.0% | |
| !!! | AGATGGTCCCAATTTTGATT+TGG | - | chr1_1:66057751-66057770 | Msa0037140:CDS | 35.0% |
| CTGAAAAGTTCTCTCAGATA+AGG | + | chr1_1:66057813-66057832 | None:intergenic | 35.0% | |
| AAAGGATTGAATTGGGACTT+CGG | + | chr1_1:66057863-66057882 | None:intergenic | 35.0% | |
| ! | ACTATTAGCCTGTCATCATT+TGG | - | chr1_1:66057899-66057918 | Msa0037140:intron | 35.0% |
| TGAAATGAGTCGAAACCAAA+AGG | + | chr1_1:66057935-66057954 | None:intergenic | 35.0% | |
| !!! | AGGTTCTTTTTTTGAGGACT+TGG | + | chr1_1:66057987-66058006 | None:intergenic | 35.0% |
| ! | ACACTGTATACCTTTGAAGA+AGG | + | chr1_1:66058007-66058026 | None:intergenic | 35.0% |
| !! | GCCTAGTTATTTTCCATGAA+AGG | - | chr1_1:66058051-66058070 | Msa0037140:intron | 35.0% |
| TTCACTAGAGAATCCTTTCA+TGG | + | chr1_1:66058067-66058086 | None:intergenic | 35.0% | |
| ! | AGTTTAACTGCTTTGAGCTA+AGG | - | chr1_1:66058187-66058206 | Msa0037140:intron | 35.0% |
| ! | TGCTTTGAGCTAAGGTTTAA+AGG | - | chr1_1:66058195-66058214 | Msa0037140:intron | 35.0% |
| AAAAATTGTGGTTCAAACCC+TGG | - | chr1_1:66058222-66058241 | Msa0037140:CDS | 35.0% | |
| TGAATAACCTTTGCTACAAG+TGG | + | chr1_1:66058477-66058496 | None:intergenic | 35.0% | |
| ! | CCAATCACAAGAACTTTTGT+CGG | + | chr1_1:66058603-66058622 | None:intergenic | 35.0% |
| AGTTCTTGTGATTGGAATGA+TGG | - | chr1_1:66058608-66058627 | Msa0037140:intron | 35.0% | |
| GTTCTTGTGATTGGAATGAT+GGG | - | chr1_1:66058609-66058628 | Msa0037140:intron | 35.0% | |
| TTCTTGTGATTGGAATGATG+GGG | - | chr1_1:66058610-66058629 | Msa0037140:intron | 35.0% | |
| TTCCATTCATAGCAATGCTT+AGG | - | chr1_1:66058718-66058737 | Msa0037140:intron | 35.0% | |
| ! | TTCCTAAGCATTGCTATGAA+TGG | + | chr1_1:66058723-66058742 | None:intergenic | 35.0% |
| ! | TCAATTTTGGGCCAAGTAAT+CGG | - | chr1_1:66058789-66058808 | Msa0037140:intron | 35.0% |
| GCAATTGAAACTTCTGATGT+TGG | - | chr1_1:66058864-66058883 | Msa0037140:intron | 35.0% | |
| ! | TGAAACTTCTGATGTTGGTT+CGG | - | chr1_1:66058869-66058888 | Msa0037140:intron | 35.0% |
| CTGTCTTTAGATTTAACCAC+CGG | + | chr1_1:66058939-66058958 | None:intergenic | 35.0% | |
| !!! | TGATGTATTTTGTTGATGGC+TGG | - | chr1_1:66059025-66059044 | Msa0037140:intron | 35.0% |
| CAGAATAGTATAAGCCTTTG+AGG | + | chr1_1:66059286-66059305 | None:intergenic | 35.0% | |
| CACTGGCGAAAGATAAATAA+TGG | - | chr1_1:66059306-66059325 | Msa0037140:five_prime_UTR | 35.0% | |
| TGTAACAGACCTACACAAAG+GGG | + | chr1_1:66057205-66057224 | None:intergenic | 40.0% | |
| AGAGGAAAACTTACAGGCAT+TGG | + | chr1_1:66057350-66057369 | None:intergenic | 40.0% | |
| ! | ATGCCTGTAAGTTTTCCTCT+TGG | - | chr1_1:66057350-66057369 | Msa0037140:intron | 40.0% |
| TTAGATCTATGTACCGAGTC+AGG | - | chr1_1:66057480-66057499 | Msa0037140:intron | 40.0% | |
| CTTGTTAAGTAACCGGAACA+TGG | + | chr1_1:66057571-66057590 | None:intergenic | 40.0% | |
| ! | TTGGCATTTAGGCTTTTCCA+TGG | - | chr1_1:66057770-66057789 | Msa0037140:CDS | 40.0% |
| ! | TGGCATTTAGGCTTTTCCAT+GGG | - | chr1_1:66057771-66057790 | Msa0037140:CDS | 40.0% |
| GAAGTCCCAATTCAATCCTT+TGG | - | chr1_1:66057862-66057881 | Msa0037140:intron | 40.0% | |
| TGCAGCCAAAGGATTGAATT+GGG | + | chr1_1:66057870-66057889 | None:intergenic | 40.0% | |
| TTGCAGCCAAAGGATTGAAT+TGG | + | chr1_1:66057871-66057890 | None:intergenic | 40.0% | |
| ATTCAATCCTTTGGCTGCAA+AGG | - | chr1_1:66057871-66057890 | Msa0037140:intron | 40.0% | |
| AGCCTGTCATCATTTGGATT+TGG | - | chr1_1:66057905-66057924 | Msa0037140:intron | 40.0% | |
| CTGTCATCATTTGGATTTGG+CGG | - | chr1_1:66057908-66057927 | Msa0037140:intron | 40.0% | |
| TGTCATCATTTGGATTTGGC+GGG | - | chr1_1:66057909-66057928 | Msa0037140:intron | 40.0% | |
| TCGACTCATTTCATGAGAAG+TGG | - | chr1_1:66057942-66057961 | Msa0037140:intron | 40.0% | |
| CATGGAAAATAACTAGGCAG+TGG | + | chr1_1:66058049-66058068 | None:intergenic | 40.0% | |
| TGGGCACTTGTATTTCATAC+CGG | + | chr1_1:66058508-66058527 | None:intergenic | 40.0% | |
| TATGAAATACAAGTGCCCAC+AGG | - | chr1_1:66058509-66058528 | Msa0037140:intron | 40.0% | |
| CCGACAAAAGTTCTTGTGAT+TGG | - | chr1_1:66058600-66058619 | Msa0037140:intron | 40.0% | |
| !! | GTAAATGCCATCGCTGATTT+AGG | + | chr1_1:66058759-66058778 | None:intergenic | 40.0% |
| ! | GGTTAAACCTGATGTTGGTT+CGG | - | chr1_1:66058905-66058924 | Msa0037140:intron | 40.0% |
| CGGTGGTTAAATCTAAAGAC+AGG | - | chr1_1:66058937-66058956 | Msa0037140:intron | 40.0% | |
| ! | AAATCTAAAGACAGGCACTG+TGG | - | chr1_1:66058945-66058964 | Msa0037140:intron | 40.0% |
| AGAAGCTGGATTCCACTTAA+TGG | + | chr1_1:66058979-66058998 | None:intergenic | 40.0% | |
| ! | CGAGGCATTCAATGTGAAAA+GGG | + | chr1_1:66059112-66059131 | None:intergenic | 40.0% |
| ! | CCTTTTCACATTGAATGCCT+CGG | - | chr1_1:66059110-66059129 | Msa0037140:intron | 40.0% |
| AGGCTTATACTATTCTGCAC+TGG | - | chr1_1:66059289-66059308 | Msa0037140:five_prime_UTR | 40.0% | |
| TGTCTCTTGCAATCTCCGAA+AGG | - | chr1_1:66056406-66056425 | Msa0037140:three_prime_UTR | 45.0% | |
| TCCTTAGGTGTCCTTTCTTG+AGG | - | chr1_1:66057276-66057295 | Msa0037140:intron | 45.0% | |
| TCCTCAAGAAAGGACACCTA+AGG | + | chr1_1:66057280-66057299 | None:intergenic | 45.0% | |
| !! | ACAGGCATTGGAAAAGCCAA+AGG | + | chr1_1:66057338-66057357 | None:intergenic | 45.0% |
| CAGCCAAGAGGAAAACTTAC+AGG | + | chr1_1:66057356-66057375 | None:intergenic | 45.0% | |
| AGAGAATCATGTCAGCCAAG+AGG | + | chr1_1:66057368-66057387 | None:intergenic | 45.0% | |
| !!! | AATCGCTTTTTGGCCTGACT+CGG | + | chr1_1:66057496-66057515 | None:intergenic | 45.0% |
| CGCCAAATCCAAATGATGAC+AGG | + | chr1_1:66057910-66057929 | None:intergenic | 45.0% | |
| !! | TTTTCCCTTTCTAGAGGGTG+TGG | - | chr1_1:66058136-66058155 | Msa0037140:intron | 45.0% |
| ! | GCAATGACTGGCTGCAAAAT+GGG | - | chr1_1:66058406-66058425 | Msa0037140:intron | 45.0% |
| CCTGGTATGACTTTGCAATC+GGG | + | chr1_1:66058437-66058456 | None:intergenic | 45.0% | |
| GCCTGGTATGACTTTGCAAT+CGG | + | chr1_1:66058438-66058457 | None:intergenic | 45.0% | |
| ! | GAAGCACTTTACTAACAGCC+TGG | + | chr1_1:66058455-66058474 | None:intergenic | 45.0% |
| AGTGCTTCCACTTGTAGCAA+AGG | - | chr1_1:66058467-66058486 | Msa0037140:intron | 45.0% | |
| TTGTATTTCATACCGGCAGG+AGG | + | chr1_1:66058501-66058520 | None:intergenic | 45.0% | |
| CACTTGTATTTCATACCGGC+AGG | + | chr1_1:66058504-66058523 | None:intergenic | 45.0% | |
| GCGGAGATTCTTTGCAAATG+CGG | + | chr1_1:66058568-66058587 | None:intergenic | 45.0% | |
| ! | TGTGATTGGAATGATGGGGA+TGG | - | chr1_1:66058614-66058633 | Msa0037140:intron | 45.0% |
| ATGGCAGTTAATGTTCCCCT+GGG | - | chr1_1:66058633-66058652 | Msa0037140:intron | 45.0% | |
| TTAATGTTCCCCTGGGTGTA+TGG | - | chr1_1:66058640-66058659 | Msa0037140:intron | 45.0% | |
| ATGTTCTCTCCATACACCCA+GGG | + | chr1_1:66058652-66058671 | None:intergenic | 45.0% | |
| TATGTTCTCTCCATACACCC+AGG | + | chr1_1:66058653-66058672 | None:intergenic | 45.0% | |
| GGGTGTATGGAGAGAACATA+CGG | - | chr1_1:66058653-66058672 | Msa0037140:intron | 45.0% | |
| ! | CGGAGAAATTTTCACCGTCA+TGG | - | chr1_1:66058673-66058692 | Msa0037140:intron | 45.0% |
| CTATGAATGGAACAGCTGCA+TGG | + | chr1_1:66058710-66058729 | None:intergenic | 45.0% | |
| CTTGATGCCTAAATCAGCGA+TGG | - | chr1_1:66058749-66058768 | Msa0037140:intron | 45.0% | |
| !! | TGTTGGTTCGGTTCAGTTAC+CGG | - | chr1_1:66058881-66058900 | Msa0037140:intron | 45.0% |
| CCAACATCAGGTTTAACCAC+CGG | + | chr1_1:66058903-66058922 | None:intergenic | 45.0% | |
| AACTGAACCGAACCAACATC+AGG | + | chr1_1:66058879-66058898 | None:intergenic | 45.0% | |
| !! | TGTTGGTTCGGTTCAGTTAC+CGG | - | chr1_1:66058881-66058900 | Msa0037140:intron | 45.0% |
| ! | CCGAGGCATTCAATGTGAAA+AGG | + | chr1_1:66059113-66059132 | None:intergenic | 45.0% |
| AGAAAACAATTTGCCAGCCG+AGG | + | chr1_1:66059130-66059149 | None:intergenic | 45.0% | |
| ! | AGGCTTTTCCATGGGAGTGA+TGG | - | chr1_1:66057779-66057798 | Msa0037140:CDS | 50.0% |
| GAACTACACCATCACTCCCA+TGG | + | chr1_1:66057790-66057809 | None:intergenic | 50.0% | |
| AATTGGGACTTCGGAGCTTC+AGG | + | chr1_1:66057854-66057873 | None:intergenic | 50.0% | |
| !! | TTTGGATTTGGCGGGCCTTT+TGG | - | chr1_1:66057917-66057936 | Msa0037140:intron | 50.0% |
| ! | TCCACCACACCCTCTAGAAA+GGG | + | chr1_1:66058143-66058162 | None:intergenic | 50.0% |
| ! | TTCCACCACACCCTCTAGAA+AGG | + | chr1_1:66058144-66058163 | None:intergenic | 50.0% |
| TCAGGATGGTTCGAAGCATG+AGG | - | chr1_1:66058380-66058399 | Msa0037140:intron | 50.0% | |
| ! | GGCAATGACTGGCTGCAAAA+TGG | - | chr1_1:66058405-66058424 | Msa0037140:intron | 50.0% |
| CCCGATTGCAAAGTCATACC+AGG | - | chr1_1:66058434-66058453 | Msa0037140:intron | 50.0% | |
| AAGGTTATTCAGCCTCCTGC+CGG | - | chr1_1:66058486-66058505 | Msa0037140:intron | 50.0% | |
| GTGCCCACAGGTAATAGTTG+AGG | - | chr1_1:66058521-66058540 | Msa0037140:intron | 50.0% | |
| GGGCCTCAACTATTACCTGT+GGG | + | chr1_1:66058527-66058546 | None:intergenic | 50.0% | |
| CACAGGTAATAGTTGAGGCC+CGG | - | chr1_1:66058526-66058545 | Msa0037140:intron | 50.0% | |
| ACAGGTAATAGTTGAGGCCC+GGG | - | chr1_1:66058527-66058546 | Msa0037140:intron | 50.0% | |
| ! | AACTTTTGTCGGCAAGCCCT+GGG | + | chr1_1:66058592-66058611 | None:intergenic | 50.0% |
| GATGGCAGTTAATGTTCCCC+TGG | - | chr1_1:66058632-66058651 | Msa0037140:intron | 50.0% | |
| TGTTCTCTCCATACACCCAG+GGG | + | chr1_1:66058651-66058670 | None:intergenic | 50.0% | |
| TGGACAGCGACAAACCATGA+CGG | + | chr1_1:66058690-66058709 | None:intergenic | 50.0% | |
| !! | AGCTGAGAGGTACCGTTTGA+AGG | - | chr1_1:66058818-66058837 | Msa0037140:intron | 50.0% |
| !! | TGAGAGGTACCGTTTGAAGG+CGG | - | chr1_1:66058821-66058840 | Msa0037140:intron | 50.0% |
| TTGCAGCAACCGCCTTCAAA+CGG | + | chr1_1:66058833-66058852 | None:intergenic | 50.0% | |
| CCGGTGGTTAAACCTGATGT+TGG | - | chr1_1:66058900-66058919 | Msa0037140:intron | 50.0% | |
| ! | GTGGTGATGAGGCCATTAAG+TGG | - | chr1_1:66058964-66058983 | Msa0037140:intron | 50.0% |
| TTCACATTGAATGCCTCGGC+TGG | - | chr1_1:66059114-66059133 | Msa0037140:intron | 50.0% | |
| GTTGCTGCCTTTGCAGCCAA+AGG | + | chr1_1:66057881-66057900 | None:intergenic | 55.0% | |
| ! | TCCCTTTCTAGAGGGTGTGG+TGG | - | chr1_1:66058139-66058158 | Msa0037140:intron | 55.0% |
| GATGGTTCGAAGCATGAGGC+AGG | - | chr1_1:66058384-66058403 | Msa0037140:intron | 55.0% | |
| AGCATGAGGCAGGCAATGAC+TGG | - | chr1_1:66058394-66058413 | Msa0037140:intron | 55.0% | |
| CGGGCCTCAACTATTACCTG+TGG | + | chr1_1:66058528-66058547 | None:intergenic | 55.0% | |
| ! | ACTTTTGTCGGCAAGCCCTG+GGG | + | chr1_1:66058591-66058610 | None:intergenic | 55.0% |
| ! | GAACTTTTGTCGGCAAGCCC+TGG | + | chr1_1:66058593-66058612 | None:intergenic | 55.0% |
| !! | CAGCTCTGGAGCCGATTACT+TGG | + | chr1_1:66058803-66058822 | None:intergenic | 55.0% |
| ! | TAATCGGCTCCAGAGCTGAG+AGG | - | chr1_1:66058805-66058824 | Msa0037140:intron | 55.0% |
| CAAACGGTACCTCTCAGCTC+TGG | + | chr1_1:66058817-66058836 | None:intergenic | 55.0% | |
| !! | TGGTTCGGTTCAGTTACCGG+TGG | - | chr1_1:66058884-66058903 | Msa0037140:intron | 55.0% |
| !! | TGGTTCGGTTCAGTTACCGG+TGG | - | chr1_1:66058884-66058903 | Msa0037140:intron | 55.0% |
| ! | AGACAGGCACTGTGGTGATG+AGG | - | chr1_1:66058953-66058972 | Msa0037140:intron | 55.0% |
| GCTGTCAGCTGAAGAGAAGC+TGG | + | chr1_1:66058993-66059012 | None:intergenic | 55.0% | |
| ACACAGGCGCGTGCAGCTAA+AGG | - | chr1_1:66057716-66057735 | Msa0037140:CDS | 60.0% | |
| GGTAATAGTTGAGGCCCGGG+CGG | - | chr1_1:66058530-66058549 | Msa0037140:intron | 60.0% | |
| TGCAAAGAATCTCCGCCCCC+AGG | - | chr1_1:66058572-66058591 | Msa0037140:intron | 60.0% | |
| GCAAAGAATCTCCGCCCCCA+GGG | - | chr1_1:66058573-66058592 | Msa0037140:intron | 60.0% | |
| ! | CTTTTGTCGGCAAGCCCTGG+GGG | + | chr1_1:66058590-66058609 | None:intergenic | 60.0% |
| GGTGCGTGCTATAGCCGCCC+GGG | + | chr1_1:66058547-66058566 | None:intergenic | 70.0% | |
| CGGTGCGTGCTATAGCCGCC+CGG | + | chr1_1:66058548-66058567 | None:intergenic | 70.0% | |
| TTGTCGGCAAGCCCTGGGGG+CGG | + | chr1_1:66058587-66058606 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66056138 | 66059416 | 66056138 | ID=Msa0037140;Name=Msa0037140 |
| chr1_1 | mRNA | 66056138 | 66059416 | 66056138 | ID=Msa0037140-mRNA-1;Parent=Msa0037140;Name=Msa0037140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=314|1|1|1|0.66|0.5|4|376|355 |
| chr1_1 | exon | 66056138 | 66057170 | 66056138 | ID=Msa0037140-mRNA-1:exon:21301;Parent=Msa0037140-mRNA-1 |
| chr1_1 | exon | 66057539 | 66057832 | 66057539 | ID=Msa0037140-mRNA-1:exon:21300;Parent=Msa0037140-mRNA-1 |
| chr1_1 | exon | 66058199 | 66058339 | 66058199 | ID=Msa0037140-mRNA-1:exon:21299;Parent=Msa0037140-mRNA-1 |
| chr1_1 | exon | 66059127 | 66059416 | 66059127 | ID=Msa0037140-mRNA-1:exon:21298;Parent=Msa0037140-mRNA-1 |
| chr1_1 | five_prime_UTR | 66059127 | 66059416 | 66059127 | ID=Msa0037140-mRNA-1:five_prime_utr;Parent=Msa0037140-mRNA-1 |
| chr1_1 | five_prime_UTR | 66058316 | 66058339 | 66058316 | ID=Msa0037140-mRNA-1:five_prime_utr;Parent=Msa0037140-mRNA-1 |
| chr1_1 | CDS | 66058199 | 66058315 | 66058199 | ID=Msa0037140-mRNA-1:cds;Parent=Msa0037140-mRNA-1 |
| chr1_1 | CDS | 66057539 | 66057832 | 66057539 | ID=Msa0037140-mRNA-1:cds;Parent=Msa0037140-mRNA-1 |
| chr1_1 | CDS | 66056514 | 66057170 | 66056514 | ID=Msa0037140-mRNA-1:cds;Parent=Msa0037140-mRNA-1 |
| chr1_1 | three_prime_UTR | 66056138 | 66056513 | 66056138 | ID=Msa0037140-mRNA-1:three_prime_utr;Parent=Msa0037140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
