Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131310 | XP_024641213.1 | 98.310 | 355 | 6 | 0 | 1 | 355 | 1 | 355 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131310 | G8A2K6 | 98.310 | 355 | 6 | 0 | 1 | 355 | 1 | 355 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037140 | Msa0131310 | 0.902885 | 6.134873e-79 | -8.615850e-47 |
| Msa0084360 | Msa0131310 | 0.987973 | 3.114991e-172 | -8.615850e-47 |
| Msa0131310 | Msa0140530 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0131310 | Msa0177240 | 0.909430 | 5.746467e-82 | -8.615850e-47 |
| Msa0131310 | Msa0381580 | 0.812585 | 3.936669e-51 | -8.615850e-47 |
| Msa0131310 | Msa0766100 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0131310 | Msa1018020 | 0.844492 | 7.309829e-59 | -8.615850e-47 |
| Msa0131310 | Msa1147980 | 0.826774 | 2.255242e-54 | -8.615850e-47 |
| Msa0131310 | Msa1171060 | 0.801908 | 7.212726e-49 | -8.615850e-47 |
| Msa0131310 | Msa1332140 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131310 | MtrunA17_Chr1g0200031 | 98.310 | 355 | 6 | 0 | 1 | 355 | 1 | 355 | 0.0 | 714 |
| Msa0131310 | MtrunA17_Chr5g0409401 | 58.696 | 368 | 128 | 8 | 1 | 355 | 1 | 357 | 2.81e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131310 | AT4G25030.1 | 66.082 | 342 | 95 | 7 | 12 | 351 | 15 | 337 | 1.50e-144 | 412 |
| Msa0131310 | AT4G25030.2 | 66.082 | 342 | 95 | 7 | 12 | 351 | 15 | 337 | 1.50e-144 | 412 |
| Msa0131310 | AT5G45410.3 | 67.832 | 286 | 87 | 4 | 10 | 294 | 10 | 291 | 6.54e-116 | 340 |
| Msa0131310 | AT5G45410.4 | 67.832 | 286 | 87 | 4 | 10 | 294 | 10 | 291 | 6.54e-116 | 340 |
| Msa0131310 | AT5G45410.2 | 67.832 | 286 | 87 | 4 | 10 | 294 | 10 | 291 | 6.54e-116 | 340 |
| Msa0131310 | AT5G45410.1 | 67.832 | 286 | 87 | 4 | 10 | 294 | 10 | 291 | 6.54e-116 | 340 |
| Msa0131310 | AT5G45410.5 | 67.832 | 286 | 87 | 4 | 10 | 294 | 10 | 291 | 6.54e-116 | 340 |
Find 124 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTATTGCAGCATCAATTT+TGG | 0.095240 | 1_3:-62082868 | Msa0131310:CDS |
| CCTAAATGCCAAATCAAAAT+TGG | 0.158845 | 1_3:+62083885 | None:intergenic |
| GGCAATGACTGGCTGCAAAA+TGG | 0.280298 | 1_3:-62083239 | Msa0131310:CDS |
| CCGACAAAAGTTCTTGTGAT+TGG | 0.288665 | 1_3:-62083044 | Msa0131310:CDS |
| CACTGGCGAAAGATAAATAA+TGG | 0.293534 | 1_3:-62082338 | Msa0131310:three_prime_UTR |
| ATTAGTAATAAGTAAATAAA+AGG | 0.298787 | 1_3:-62082434 | Msa0131310:three_prime_UTR |
| TTTGGATTTGGCGGGCCTTT+CGG | 0.299188 | 1_3:-62083727 | Msa0131310:CDS |
| TGTTGGTTCGGTTCAGTTAC+CGG | 0.302078 | 1_3:-62082727 | Msa0131310:CDS |
| TGTTGGTTCGGTTCAGTTAC+CGG | 0.302078 | 1_3:-62082763 | Msa0131310:CDS |
| CTTCTCATTTGTTTCACCTT+TGG | 0.302572 | 1_3:-62084325 | Msa0131310:CDS |
| AATTGGGACTTCGGAGCTTC+AGG | 0.308144 | 1_3:+62083793 | None:intergenic |
| AAAGATAAATAATGGGAATA+TGG | 0.334003 | 1_3:-62082330 | Msa0131310:three_prime_UTR |
| ACTATTAGCCTGTCATCATT+TGG | 0.343341 | 1_3:-62083745 | Msa0131310:CDS |
| TTGCAGCCAAAGGATTGAAT+TGG | 0.344637 | 1_3:+62083776 | None:intergenic |
| AGCCTGTCATCATTTGGATT+TGG | 0.362493 | 1_3:-62083739 | Msa0131310:CDS |
| TCACTTTCTCTCTCCACAAT+TGG | 0.372412 | 1_3:-62085441 | Msa0131310:five_prime_UTR |
| CTTTGGTTGTTATGTGCATT+TGG | 0.375785 | 1_3:-62085664 | Msa0131310:five_prime_UTR |
| AGAAGCTGGATTCCACTTAA+TGG | 0.381452 | 1_3:+62082668 | None:intergenic |
| GTAAATGCCATCGCTGATTT+AGG | 0.392350 | 1_3:+62082888 | None:intergenic |
| GATGGCAGTTAATGTTCCCC+TGG | 0.396744 | 1_3:-62083012 | Msa0131310:CDS |
| CTGATACAAAACTATTGTAT+TGG | 0.401755 | 1_3:-62082411 | Msa0131310:three_prime_UTR |
| CTGAAAAGTTCTCTCAGATA+AGG | 0.401980 | 1_3:+62083834 | None:intergenic |
| CAGCTCTGGAGCCGATTACT+TGG | 0.406356 | 1_3:+62082844 | None:intergenic |
| AGCACATTTCATTTCAACTT+TGG | 0.408712 | 1_3:-62085681 | Msa0131310:five_prime_UTR |
| TTATGAATGAAAGTCAATTA+TGG | 0.409721 | 1_3:+62085625 | None:intergenic |
| CTGTCATCATTTGGATTTGG+CGG | 0.417300 | 1_3:-62083736 | Msa0131310:CDS |
| GCCTGGTATGACTTTGCAAT+CGG | 0.418038 | 1_3:+62083209 | None:intergenic |
| GCAATGACTGGCTGCAAAAT+GGG | 0.421902 | 1_3:-62083238 | Msa0131310:CDS |
| TGAAACAAATGAGAAGTTAG+TGG | 0.421939 | 1_3:+62084332 | None:intergenic |
| TGAAACTTCTGATGTTGGTT+CGG | 0.422639 | 1_3:-62082775 | Msa0131310:CDS |
| GAAGTCCCAATTCAATCCTT+TGG | 0.425420 | 1_3:-62083782 | Msa0131310:CDS |
| CAGAATAGTATAAGCCTTTG+AGG | 0.427218 | 1_3:+62082361 | None:intergenic |
| TGCAGCCAAAGGATTGAATT+GGG | 0.428925 | 1_3:+62083777 | None:intergenic |
| AGAGAGATATAATCTGCAAT+AGG | 0.429507 | 1_3:+62085514 | None:intergenic |
| TTAATGTTCCCCTGGGTGTA+TGG | 0.431929 | 1_3:-62083004 | Msa0131310:CDS |
| TTCACATTGAATGCCTCGGC+TGG | 0.435968 | 1_3:-62082530 | Msa0131310:three_prime_UTR |
| CGGTGCGTGCTATAGCCGCC+CGG | 0.447654 | 1_3:+62083099 | None:intergenic |
| TTACATTTGAAGCAGAAGAA+TGG | 0.449897 | 1_3:-62084424 | Msa0131310:exon |
| CCGAGGCATTCAATGTGAAA+AGG | 0.453832 | 1_3:+62082534 | None:intergenic |
| AGTTCTTGTGATTGGAATGA+TGG | 0.455110 | 1_3:-62083036 | Msa0131310:CDS |
| GGTTAAACCTGATGTTGGTT+CGG | 0.456336 | 1_3:-62082739 | Msa0131310:CDS |
| TCCTTAGGTGTCCTTTCTTG+AGG | 0.456558 | 1_3:-62084368 | Msa0131310:CDS |
| GCAATTGAAACTTCTGATGT+TGG | 0.457076 | 1_3:-62082780 | Msa0131310:CDS |
| TTCCTAAGCATTGCTATGAA+TGG | 0.459333 | 1_3:+62082924 | None:intergenic |
| CACAGGTAATAGTTGAGGCC+CGG | 0.459547 | 1_3:-62083118 | Msa0131310:CDS |
| AGCATGAGGCAGGCAATGAC+TGG | 0.466015 | 1_3:-62083250 | Msa0131310:CDS |
| TCATTAATGTTCCTCAAGAA+AGG | 0.472024 | 1_3:+62084357 | None:intergenic |
| AGAGGAAAACTTACAGGCAT+TGG | 0.472621 | 1_3:+62084297 | None:intergenic |
| TTAACGAGGATTCTATCCTT+AGG | 0.473812 | 1_3:-62084383 | Msa0131310:CDS |
| CTAAATGCCAAATCAAAATT+GGG | 0.475015 | 1_3:+62083886 | None:intergenic |
| ATTCAATCCTTTGGCTGCAA+AGG | 0.488211 | 1_3:-62083773 | Msa0131310:CDS |
| TGAAAAGTTCTCTCAGATAA+GGG | 0.490749 | 1_3:+62083835 | None:intergenic |
| ACTGGCGAAAGATAAATAAT+GGG | 0.491311 | 1_3:-62082337 | Msa0131310:three_prime_UTR |
| CGAGGCATTCAATGTGAAAA+GGG | 0.498915 | 1_3:+62082535 | None:intergenic |
| AGCTGAGAGGTACCGTTTGA+AGG | 0.503666 | 1_3:-62082826 | Msa0131310:CDS |
| GCTGTCAGCTGAAGAGAAGC+TGG | 0.505469 | 1_3:+62082654 | None:intergenic |
| CGCCAAATCCAAATGATGAC+AGG | 0.507367 | 1_3:+62083737 | None:intergenic |
| CACTTGTATTTCATACCGGC+AGG | 0.508980 | 1_3:+62083143 | None:intergenic |
| TGTCATCATTTGGATTTGGC+GGG | 0.510171 | 1_3:-62083735 | Msa0131310:CDS |
| TTCCATTCATAGCAATGCTT+AGG | 0.510376 | 1_3:-62082926 | Msa0131310:CDS |
| ACAGGTAATAGTTGAGGCCC+GGG | 0.513811 | 1_3:-62083117 | Msa0131310:CDS |
| ACACAGGCGCGTGCAGCTAA+AGG | 0.515194 | 1_3:-62083928 | Msa0131310:intron |
| ATTCATTACTTCATCCTCAA+AGG | 0.518038 | 1_3:-62082375 | Msa0131310:three_prime_UTR |
| GTTCTTGTGATTGGAATGAT+GGG | 0.518850 | 1_3:-62083035 | Msa0131310:CDS |
| CCTGGTATGACTTTGCAATC+GGG | 0.521178 | 1_3:+62083210 | None:intergenic |
| CCCGATTGCAAAGTCATACC+AGG | 0.522281 | 1_3:-62083210 | Msa0131310:CDS |
| GATGGTTCGAAGCATGAGGC+AGG | 0.526953 | 1_3:-62083260 | Msa0131310:CDS |
| AACTGAACCGAACCAACATC+AGG | 0.528631 | 1_3:+62082732 | None:intergenic |
| ACACTGTATACCTTTGAAGA+AGG | 0.529403 | 1_3:+62083640 | None:intergenic |
| CTGTCTTTAGATTTAACCAC+CGG | 0.531229 | 1_3:+62082708 | None:intergenic |
| TTGCAGCAACCACCTTCAAA+CGG | 0.532976 | 1_3:+62082814 | None:intergenic |
| CAAGAGACACACGCCAATTG+TGG | 0.534636 | 1_3:+62085428 | None:intergenic |
| CAAACGGTACCTCTCAGCTC+TGG | 0.535101 | 1_3:+62082830 | None:intergenic |
| CCGGTGGTTAAACCTGATGT+TGG | 0.535233 | 1_3:-62082744 | Msa0131310:CDS |
| ATGGCAGTTAATGTTCCCCT+GGG | 0.538720 | 1_3:-62083011 | Msa0131310:CDS |
| GTTGCTGCCTTTGCAGCCAA+AGG | 0.541299 | 1_3:+62083766 | None:intergenic |
| AGTGCTTCCACTTGTAGCAA+AGG | 0.545580 | 1_3:-62083177 | Msa0131310:CDS |
| CGGGCCTCAACTATTACCTG+TGG | 0.551578 | 1_3:+62083119 | None:intergenic |
| TCGACTCATTTCATGAGAAG+TGG | 0.551742 | 1_3:-62083702 | Msa0131310:CDS |
| AAGGTTATTCAGCCTCCTGC+CGG | 0.551898 | 1_3:-62083158 | Msa0131310:CDS |
| TGGGCACTTGTATTTCATAC+CGG | 0.555676 | 1_3:+62083139 | None:intergenic |
| GAAACAAATGAGAAGTTAGT+GGG | 0.556799 | 1_3:+62084333 | None:intergenic |
| AAAGGATTGAATTGGGACTT+CGG | 0.558670 | 1_3:+62083784 | None:intergenic |
| AGTAACAAAATACACACTCA+AGG | 0.560552 | 1_3:+62082558 | None:intergenic |
| AGAAAACAATTTGCCAGCCG+AGG | 0.575808 | 1_3:+62082517 | None:intergenic |
| GGGTGTATGGAGAGAACATA+CGG | 0.582703 | 1_3:-62082991 | Msa0131310:CDS |
| AATTAAAGCAAAGAATGAGA+TGG | 0.588142 | 1_3:+62085481 | None:intergenic |
| AGGCTTATACTATTCTGCAC+TGG | 0.589755 | 1_3:-62082355 | Msa0131310:three_prime_UTR |
| TCCTCAAGAAAGGACACCTA+AGG | 0.590715 | 1_3:+62084367 | None:intergenic |
| CGGTGGTTAAATCTAAAGAC+AGG | 0.591640 | 1_3:-62082707 | Msa0131310:CDS |
| AGACAGGCACTGTGGTGATG+AGG | 0.596413 | 1_3:-62082691 | Msa0131310:CDS |
| GGTGCGTGCTATAGCCGCCC+GGG | 0.604464 | 1_3:+62083100 | None:intergenic |
| GAACTACACCATCACTCCCA+TGG | 0.605433 | 1_3:+62083857 | None:intergenic |
| TGAATAACCTTTGCTACAAG+TGG | 0.606471 | 1_3:+62083170 | None:intergenic |
| ATGTTCTCTCCATACACCCA+GGG | 0.609222 | 1_3:+62082995 | None:intergenic |
| GAAGCACTTTACTAACAGCC+TGG | 0.611395 | 1_3:+62083192 | None:intergenic |
| GGGCCTCAACTATTACCTGT+GGG | 0.612298 | 1_3:+62083120 | None:intergenic |
| AAAGCAAAGAATGAGATGGT+AGG | 0.615145 | 1_3:+62085485 | None:intergenic |
| GCGGAGATTCTTTGCAAATG+CGG | 0.615724 | 1_3:+62083079 | None:intergenic |
| TTGTATTTCATACCGGCAGG+AGG | 0.618213 | 1_3:+62083146 | None:intergenic |
| TGAAATGAGTCGAAACCGAA+AGG | 0.619454 | 1_3:+62083712 | None:intergenic |
| AATTGTGGAGAGAGAAAGTG+AGG | 0.619463 | 1_3:+62085443 | None:intergenic |
| TATGTTCTCTCCATACACCC+AGG | 0.620444 | 1_3:+62082994 | None:intergenic |
| TCAGGATGGTTCGAAGCATG+AGG | 0.627100 | 1_3:-62083264 | Msa0131310:intron |
| CTTGATGCCTAAATCAGCGA+TGG | 0.629945 | 1_3:-62082895 | Msa0131310:CDS |
| TGTGATTGGAATGATGGGGA+TGG | 0.631056 | 1_3:-62083030 | Msa0131310:CDS |
| TGTCTCTTGCAATCTCCGAA+AGG | 0.632458 | 1_3:-62085414 | Msa0131310:intron |
| CTATGAATGGAACAGCTGCA+TGG | 0.632725 | 1_3:+62082937 | None:intergenic |
| TGAGAGGTACCGTTTGAAGG+TGG | 0.633668 | 1_3:-62082823 | Msa0131310:CDS |
| GTAACAAAATACACACTCAA+GGG | 0.636352 | 1_3:+62082559 | None:intergenic |
| GTGGTGATGAGGCCATTAAG+TGG | 0.636840 | 1_3:-62082680 | Msa0131310:CDS |
| TATGAAATACAAGTGCCCAC+AGG | 0.637852 | 1_3:-62083135 | Msa0131310:CDS |
| CCAACATCAGGTTTAACCAC+CGG | 0.638938 | 1_3:+62082744 | None:intergenic |
| GTGCCCACAGGTAATAGTTG+AGG | 0.641293 | 1_3:-62083123 | Msa0131310:CDS |
| ACAGGCATTGGAAAAGCCAA+AGG | 0.643414 | 1_3:+62084309 | None:intergenic |
| CTTTGCTAGAGATATTAACG+AGG | 0.673726 | 1_3:-62084397 | Msa0131310:CDS |
| TGGACAGCGACAAACCATGA+CGG | 0.683212 | 1_3:+62082957 | None:intergenic |
| TGGTTCGGTTCAGTTACCGG+TGG | 0.691322 | 1_3:-62082724 | Msa0131310:CDS |
| TGGTTCGGTTCAGTTACCGG+TGG | 0.691322 | 1_3:-62082760 | Msa0131310:CDS |
| TAATCGGCTCCAGAGCTGAG+AGG | 0.712400 | 1_3:-62082839 | Msa0131310:CDS |
| TTCTTGTGATTGGAATGATG+GGG | 0.717293 | 1_3:-62083034 | Msa0131310:CDS |
| AAATCTAAAGACAGGCACTG+TGG | 0.728626 | 1_3:-62082699 | Msa0131310:CDS |
| GGTAATAGTTGAGGCCCGGG+CGG | 0.745364 | 1_3:-62083114 | Msa0131310:CDS |
| TGTTCTCTCCATACACCCAG+GGG | 0.753131 | 1_3:+62082996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTATTTTTTTAAGAT+AGG | + | chr1_3:62084569-62084588 | None:intergenic | 10.0% |
| !! | ATTAGTAATAAGTAAATAAA+AGG | - | chr1_3:62085507-62085526 | Msa0131310:five_prime_UTR | 10.0% |
| !! | AAATTATCACATAAAAAAAG+AGG | + | chr1_3:62082707-62082726 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTATGTGATAATT+TGG | - | chr1_3:62082706-62082725 | Msa0131310:CDS | 15.0% |
| !!! | TCATATGTTTTGAATTTAAT+AGG | - | chr1_3:62082761-62082780 | Msa0131310:CDS | 15.0% |
| !!! | TAAATTGTTATTGTTTAGAA+AGG | - | chr1_3:62082807-62082826 | Msa0131310:CDS | 15.0% |
| !!! | AAATTGTTATTGTTTAGAAA+GGG | - | chr1_3:62082808-62082827 | Msa0131310:CDS | 15.0% |
| !! | ATATCAGTTTATTAAATAAC+AGG | + | chr1_3:62083975-62083994 | None:intergenic | 15.0% |
| !! | AAAATTAAAATCAAGTTACT+AGG | + | chr1_3:62084417-62084436 | None:intergenic | 15.0% |
| !!! | GTTTAATTTAATTGATATTC+AGG | - | chr1_3:62084659-62084678 | Msa0131310:intron | 15.0% |
| !! | TTATGAATGAAAGTCAATTA+TGG | + | chr1_3:62082319-62082338 | None:intergenic | 20.0% |
| !!! | AATTGTTATTGTTTAGAAAG+GGG | - | chr1_3:62082809-62082828 | Msa0131310:CDS | 20.0% |
| !! | TTGAATGTAGAAAATGTATT+GGG | - | chr1_3:62082832-62082851 | Msa0131310:CDS | 20.0% |
| !!! | CAGAATTGATTTAAAATGTT+TGG | + | chr1_3:62083155-62083174 | None:intergenic | 20.0% |
| !!! | GTTGCTTTATTATATCATAT+TGG | - | chr1_3:62083382-62083401 | Msa0131310:intron | 20.0% |
| !!! | AATTTACAATAATCGCTTTT+TGG | + | chr1_3:62083803-62083822 | None:intergenic | 20.0% |
| !!! | ATTATAACTTGTTAAGTAAC+CGG | + | chr1_3:62083875-62083894 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATGAAAAATTG+TGG | - | chr1_3:62084507-62084526 | Msa0131310:intron | 20.0% |
| !! | AATTTAATTGATATTCAGGA+TGG | - | chr1_3:62084663-62084682 | Msa0131310:intron | 20.0% |
| !!! | AAAGATAAATAATGGGAATA+TGG | - | chr1_3:62085611-62085630 | Msa0131310:five_prime_UTR | 20.0% |
| ! | AATTAAAGCAAAGAATGAGA+TGG | + | chr1_3:62082463-62082482 | None:intergenic | 25.0% |
| ! | AAAGATAGATAGATACCTTT+CGG | + | chr1_3:62082545-62082564 | None:intergenic | 25.0% |
| ! | TCACATAAAAAAAGAGGATT+GGG | + | chr1_3:62082701-62082720 | None:intergenic | 25.0% |
| ! | ATCACATAAAAAAAGAGGAT+TGG | + | chr1_3:62082702-62082721 | None:intergenic | 25.0% |
| !! | GAAACTTTTCAACAATAACA+TGG | + | chr1_3:62082734-62082753 | None:intergenic | 25.0% |
| ! | TAATAGGTGAATTTATGAAC+TGG | - | chr1_3:62082777-62082796 | Msa0131310:CDS | 25.0% |
| ! | AATAGGTGAATTTATGAACT+GGG | - | chr1_3:62082778-62082797 | Msa0131310:CDS | 25.0% |
| ! | GTTGAATGTAGAAAATGTAT+TGG | - | chr1_3:62082831-62082850 | Msa0131310:CDS | 25.0% |
| !!! | TTTCATTGAGTTGACTTTTA+TGG | - | chr1_3:62082858-62082877 | Msa0131310:CDS | 25.0% |
| ! | TTATATGTTAGAACTTCTAG+TGG | - | chr1_3:62082893-62082912 | Msa0131310:CDS | 25.0% |
| ! | AATAAGAAAGAAACTCATCA+TGG | + | chr1_3:62083473-62083492 | None:intergenic | 25.0% |
| ! | TTTACTTTAGTCTGCATATA+TGG | - | chr1_3:62083693-62083712 | Msa0131310:CDS | 25.0% |
| ! | TAAATTAAAGCTTCTGTTCT+GGG | - | chr1_3:62083817-62083836 | Msa0131310:CDS | 25.0% |
| !!! | TTTTTTTAATCTCCATGTTC+CGG | - | chr1_3:62083853-62083872 | Msa0131310:CDS | 25.0% |
| ! | CTAAATGCCAAATCAAAATT+GGG | + | chr1_3:62084058-62084077 | None:intergenic | 25.0% |
| ! | AAAAAAAGAACCTTCTTCAA+AGG | - | chr1_3:62084291-62084310 | Msa0131310:intron | 25.0% |
| !!! | TTTTAATTTTCCCTTTCTAG+AGG | - | chr1_3:62084427-62084446 | Msa0131310:exon | 25.0% |
| !!! | TTTAATTTTCCCTTTCTAGA+GGG | - | chr1_3:62084428-62084447 | Msa0131310:five_prime_UTR | 25.0% |
| ! | AAACTAAGTAATTGCTTAGT+TGG | - | chr1_3:62084459-62084478 | Msa0131310:intron | 25.0% |
| ! | AACTAAGTAATTGCTTAGTT+GGG | - | chr1_3:62084460-62084479 | Msa0131310:intron | 25.0% |
| !! | TAGTATTTTCTCTTTTACCA+GGG | + | chr1_3:62084539-62084558 | None:intergenic | 25.0% |
| !! | TTAGTATTTTCTCTTTTACC+AGG | + | chr1_3:62084540-62084559 | None:intergenic | 25.0% |
| ! | CTGATACAAAACTATTGTAT+TGG | - | chr1_3:62085530-62085549 | Msa0131310:five_prime_UTR | 25.0% |
| AGCACATTTCATTTCAACTT+TGG | - | chr1_3:62082260-62082279 | Msa0131310:three_prime_UTR | 30.0% | |
| AGAGAGATATAATCTGCAAT+AGG | + | chr1_3:62082430-62082449 | None:intergenic | 30.0% | |
| ! | GATCCATATTTTCTTCATCT+GGG | - | chr1_3:62082663-62082682 | Msa0131310:CDS | 30.0% |
| CACATAAAAAAAGAGGATTG+GGG | + | chr1_3:62082700-62082719 | None:intergenic | 30.0% | |
| TGGTGTGAATTAATGCAATT+TGG | - | chr1_3:62082913-62082932 | Msa0131310:CDS | 30.0% | |
| GGTGTGAATTAATGCAATTT+GGG | - | chr1_3:62082914-62082933 | Msa0131310:CDS | 30.0% | |
| ATTAAAACTGATTGAGCTGA+AGG | - | chr1_3:62083011-62083030 | Msa0131310:CDS | 30.0% | |
| TCTAACATGAAGCTAGAATT+TGG | + | chr1_3:62083093-62083112 | None:intergenic | 30.0% | |
| ! | TGCAGTTGTAGAATCAATTT+TGG | - | chr1_3:62083173-62083192 | Msa0131310:CDS | 30.0% |
| !!! | AATTTTGGCTCATCTAAAAG+TGG | - | chr1_3:62083188-62083207 | Msa0131310:CDS | 30.0% |
| CTAAAAGTGGTACAAAACAT+AGG | - | chr1_3:62083201-62083220 | Msa0131310:CDS | 30.0% | |
| GTCATTGAAACAAATCAACA+AGG | + | chr1_3:62083267-62083286 | None:intergenic | 30.0% | |
| TTGGTTCATTATTAGCCATT+AGG | - | chr1_3:62083401-62083420 | Msa0131310:intron | 30.0% | |
| AAACATGTAAAGTTCACATC+AGG | + | chr1_3:62083435-62083454 | None:intergenic | 30.0% | |
| ATTATAATTCCCCTTTGTGT+AGG | - | chr1_3:62083490-62083509 | Msa0131310:intron | 30.0% | |
| ! | TTACATTTGAAGCAGAAGAA+TGG | - | chr1_3:62083517-62083536 | Msa0131310:intron | 30.0% |
| TCATTAATGTTCCTCAAGAA+AGG | + | chr1_3:62083587-62083606 | None:intergenic | 30.0% | |
| GAAACAAATGAGAAGTTAGT+GGG | + | chr1_3:62083611-62083630 | None:intergenic | 30.0% | |
| TGAAACAAATGAGAAGTTAG+TGG | + | chr1_3:62083612-62083631 | None:intergenic | 30.0% | |
| TTTATGAGCAAAGATATGAC+AGG | + | chr1_3:62083755-62083774 | None:intergenic | 30.0% | |
| GTAAATTAAAGCTTCTGTTC+TGG | - | chr1_3:62083816-62083835 | Msa0131310:CDS | 30.0% | |
| GTGAAATTGTCCACAATTTA+TGG | - | chr1_3:62083898-62083917 | Msa0131310:CDS | 30.0% | |
| !! | AAAGGTCCAATTTTTGAAGA+TGG | - | chr1_3:62084031-62084050 | Msa0131310:intron | 30.0% |
| CCTAAATGCCAAATCAAAAT+TGG | + | chr1_3:62084059-62084078 | None:intergenic | 30.0% | |
| !!! | CCAATTTTGATTTGGCATTT+AGG | - | chr1_3:62084056-62084075 | Msa0131310:intron | 30.0% |
| TGAAAAGTTCTCTCAGATAA+GGG | + | chr1_3:62084109-62084128 | None:intergenic | 30.0% | |
| !!! | AGGACTTGGATTTTTTATTC+TGG | + | chr1_3:62084270-62084289 | None:intergenic | 30.0% |
| !!! | TGAAGAAGGTTCTTTTTTTG+AGG | + | chr1_3:62084290-62084309 | None:intergenic | 30.0% |
| TCCTTTCATGGAAAATAACT+AGG | + | chr1_3:62084352-62084371 | None:intergenic | 30.0% | |
| ! | TACTATTGCAGCATCAATTT+TGG | - | chr1_3:62085073-62085092 | Msa0131310:intron | 30.0% |
| ! | ACTATTGCAGCATCAATTTT+GGG | - | chr1_3:62085074-62085093 | Msa0131310:intron | 30.0% |
| ! | CAACTGATGTATTTTGTTGA+TGG | - | chr1_3:62085318-62085337 | Msa0131310:intron | 30.0% |
| GTAACAAAATACACACTCAA+GGG | + | chr1_3:62085385-62085404 | None:intergenic | 30.0% | |
| AGTAACAAAATACACACTCA+AGG | + | chr1_3:62085386-62085405 | None:intergenic | 30.0% | |
| ATTCATTACTTCATCCTCAA+AGG | - | chr1_3:62085566-62085585 | Msa0131310:five_prime_UTR | 30.0% | |
| ACTGGCGAAAGATAAATAAT+GGG | - | chr1_3:62085604-62085623 | Msa0131310:five_prime_UTR | 30.0% | |
| CTTTGGTTGTTATGTGCATT+TGG | - | chr1_3:62082277-62082296 | Msa0131310:three_prime_UTR | 35.0% | |
| AAAGCAAAGAATGAGATGGT+AGG | + | chr1_3:62082459-62082478 | None:intergenic | 35.0% | |
| !! | GCTTCTACGTTAAAGCATTT+TGG | - | chr1_3:62082641-62082660 | Msa0131310:CDS | 35.0% |
| ! | GGATCCATATTTTCTTCATC+TGG | - | chr1_3:62082662-62082681 | Msa0131310:CDS | 35.0% |
| TCACCCAGATGAAGAAAATA+TGG | + | chr1_3:62082669-62082688 | None:intergenic | 35.0% | |
| ! | TCCTCATCACTTGTTAATGA+TGG | - | chr1_3:62083294-62083313 | Msa0131310:intron | 35.0% |
| ! | CCTCATCACTTGTTAATGAT+GGG | - | chr1_3:62083295-62083314 | Msa0131310:intron | 35.0% |
| ! | CTCATCACTTGTTAATGATG+GGG | - | chr1_3:62083296-62083315 | Msa0131310:intron | 35.0% |
| TAGGATTCAAGGTTGAAGTT+TGG | - | chr1_3:62083332-62083351 | Msa0131310:intron | 35.0% | |
| CATCAGGATTCAATTCCTAA+TGG | + | chr1_3:62083419-62083438 | None:intergenic | 35.0% | |
| AAACTCATCATGGAATTGAC+AGG | + | chr1_3:62083463-62083482 | None:intergenic | 35.0% | |
| ATGTAACAGACCTACACAAA+GGG | + | chr1_3:62083503-62083522 | None:intergenic | 35.0% | |
| AATGTAACAGACCTACACAA+AGG | + | chr1_3:62083504-62083523 | None:intergenic | 35.0% | |
| CTTTGCTAGAGATATTAACG+AGG | - | chr1_3:62083544-62083563 | Msa0131310:intron | 35.0% | |
| TTAACGAGGATTCTATCCTT+AGG | - | chr1_3:62083558-62083577 | Msa0131310:intron | 35.0% | |
| CTTCTCATTTGTTTCACCTT+TGG | - | chr1_3:62083616-62083635 | Msa0131310:intron | 35.0% | |
| ATTCTCAAATAACTGCTCAG+TGG | + | chr1_3:62083728-62083747 | None:intergenic | 35.0% | |
| CAAGATAGCACCATAAATTG+TGG | + | chr1_3:62083911-62083930 | None:intergenic | 35.0% | |
| TTACGAATCATCTCTTACAC+AGG | - | chr1_3:62083997-62084016 | Msa0131310:intron | 35.0% | |
| TTGGGACCATCTTCAAAAAT+TGG | + | chr1_3:62084040-62084059 | None:intergenic | 35.0% | |
| !!! | AGATGGTCCCAATTTTGATT+TGG | - | chr1_3:62084048-62084067 | Msa0131310:intron | 35.0% |
| CTGAAAAGTTCTCTCAGATA+AGG | + | chr1_3:62084110-62084129 | None:intergenic | 35.0% | |
| AAAGGATTGAATTGGGACTT+CGG | + | chr1_3:62084160-62084179 | None:intergenic | 35.0% | |
| ! | ACTATTAGCCTGTCATCATT+TGG | - | chr1_3:62084196-62084215 | Msa0131310:intron | 35.0% |
| !!! | AGGTTCTTTTTTTGAGGACT+TGG | + | chr1_3:62084284-62084303 | None:intergenic | 35.0% |
| ! | ACACTGTATACCTTTGAAGA+AGG | + | chr1_3:62084304-62084323 | None:intergenic | 35.0% |
| !! | GCCTAGTTATTTTCCATGAA+AGG | - | chr1_3:62084348-62084367 | Msa0131310:CDS | 35.0% |
| TTCACTAGAGAATCCTTTCA+TGG | + | chr1_3:62084364-62084383 | None:intergenic | 35.0% | |
| ! | AGTTTAACTGCTTTGAGCTA+AGG | - | chr1_3:62084484-62084503 | Msa0131310:intron | 35.0% |
| ! | TGCTTTGAGCTAAGGTTTAA+AGG | - | chr1_3:62084492-62084511 | Msa0131310:intron | 35.0% |
| AAAAATTGTGGTTCAAACCC+TGG | - | chr1_3:62084519-62084538 | Msa0131310:intron | 35.0% | |
| TGAATAACCTTTGCTACAAG+TGG | + | chr1_3:62084774-62084793 | None:intergenic | 35.0% | |
| ! | CCAATCACAAGAACTTTTGT+CGG | + | chr1_3:62084900-62084919 | None:intergenic | 35.0% |
| AGTTCTTGTGATTGGAATGA+TGG | - | chr1_3:62084905-62084924 | Msa0131310:intron | 35.0% | |
| GTTCTTGTGATTGGAATGAT+GGG | - | chr1_3:62084906-62084925 | Msa0131310:intron | 35.0% | |
| TTCTTGTGATTGGAATGATG+GGG | - | chr1_3:62084907-62084926 | Msa0131310:intron | 35.0% | |
| TTCCATTCATAGCAATGCTT+AGG | - | chr1_3:62085015-62085034 | Msa0131310:intron | 35.0% | |
| ! | TTCCTAAGCATTGCTATGAA+TGG | + | chr1_3:62085020-62085039 | None:intergenic | 35.0% |
| ! | TCAATTTTGGGCCAAGTAAT+CGG | - | chr1_3:62085086-62085105 | Msa0131310:intron | 35.0% |
| GCAATTGAAACTTCTGATGT+TGG | - | chr1_3:62085161-62085180 | Msa0131310:intron | 35.0% | |
| ! | TGAAACTTCTGATGTTGGTT+CGG | - | chr1_3:62085166-62085185 | Msa0131310:intron | 35.0% |
| CTGTCTTTAGATTTAACCAC+CGG | + | chr1_3:62085236-62085255 | None:intergenic | 35.0% | |
| !!! | TGATGTATTTTGTTGATGGC+TGG | - | chr1_3:62085322-62085341 | Msa0131310:intron | 35.0% |
| CAGAATAGTATAAGCCTTTG+AGG | + | chr1_3:62085583-62085602 | None:intergenic | 35.0% | |
| CACTGGCGAAAGATAAATAA+TGG | - | chr1_3:62085603-62085622 | Msa0131310:five_prime_UTR | 35.0% | |
| AATTGTGGAGAGAGAAAGTG+AGG | + | chr1_3:62082501-62082520 | None:intergenic | 40.0% | |
| TCACTTTCTCTCTCCACAAT+TGG | - | chr1_3:62082500-62082519 | Msa0131310:three_prime_UTR | 40.0% | |
| CCCATCATTAACAAGTGATG+AGG | + | chr1_3:62083298-62083317 | None:intergenic | 40.0% | |
| ! | TCACTTGTTAATGATGGGGA+AGG | - | chr1_3:62083300-62083319 | Msa0131310:intron | 40.0% |
| ! | TTGTTAATGATGGGGAAGGA+AGG | - | chr1_3:62083304-62083323 | Msa0131310:intron | 40.0% |
| TGTAACAGACCTACACAAAG+GGG | + | chr1_3:62083502-62083521 | None:intergenic | 40.0% | |
| AGAGGAAAACTTACAGGCAT+TGG | + | chr1_3:62083647-62083666 | None:intergenic | 40.0% | |
| ! | ATGCCTGTAAGTTTTCCTCT+TGG | - | chr1_3:62083647-62083666 | Msa0131310:intron | 40.0% |
| TTAGATCTATGTACCGAGTC+AGG | - | chr1_3:62083777-62083796 | Msa0131310:CDS | 40.0% | |
| CTTGTTAAGTAACCGGAACA+TGG | + | chr1_3:62083868-62083887 | None:intergenic | 40.0% | |
| ! | TTGGCATTTAGGCTTTTCCA+TGG | - | chr1_3:62084067-62084086 | Msa0131310:intron | 40.0% |
| ! | TGGCATTTAGGCTTTTCCAT+GGG | - | chr1_3:62084068-62084087 | Msa0131310:intron | 40.0% |
| GAAGTCCCAATTCAATCCTT+TGG | - | chr1_3:62084159-62084178 | Msa0131310:intron | 40.0% | |
| TGCAGCCAAAGGATTGAATT+GGG | + | chr1_3:62084167-62084186 | None:intergenic | 40.0% | |
| TTGCAGCCAAAGGATTGAAT+TGG | + | chr1_3:62084168-62084187 | None:intergenic | 40.0% | |
| ATTCAATCCTTTGGCTGCAA+AGG | - | chr1_3:62084168-62084187 | Msa0131310:intron | 40.0% | |
| AGCCTGTCATCATTTGGATT+TGG | - | chr1_3:62084202-62084221 | Msa0131310:intron | 40.0% | |
| CTGTCATCATTTGGATTTGG+CGG | - | chr1_3:62084205-62084224 | Msa0131310:intron | 40.0% | |
| TGTCATCATTTGGATTTGGC+GGG | - | chr1_3:62084206-62084225 | Msa0131310:intron | 40.0% | |
| TGAAATGAGTCGAAACCGAA+AGG | + | chr1_3:62084232-62084251 | None:intergenic | 40.0% | |
| TCGACTCATTTCATGAGAAG+TGG | - | chr1_3:62084239-62084258 | Msa0131310:intron | 40.0% | |
| CATGGAAAATAACTAGGCAG+TGG | + | chr1_3:62084346-62084365 | None:intergenic | 40.0% | |
| TGGGCACTTGTATTTCATAC+CGG | + | chr1_3:62084805-62084824 | None:intergenic | 40.0% | |
| TATGAAATACAAGTGCCCAC+AGG | - | chr1_3:62084806-62084825 | Msa0131310:intron | 40.0% | |
| CCGACAAAAGTTCTTGTGAT+TGG | - | chr1_3:62084897-62084916 | Msa0131310:intron | 40.0% | |
| !! | GTAAATGCCATCGCTGATTT+AGG | + | chr1_3:62085056-62085075 | None:intergenic | 40.0% |
| ! | GGTTAAACCTGATGTTGGTT+CGG | - | chr1_3:62085202-62085221 | Msa0131310:intron | 40.0% |
| CGGTGGTTAAATCTAAAGAC+AGG | - | chr1_3:62085234-62085253 | Msa0131310:intron | 40.0% | |
| ! | AAATCTAAAGACAGGCACTG+TGG | - | chr1_3:62085242-62085261 | Msa0131310:intron | 40.0% |
| AGAAGCTGGATTCCACTTAA+TGG | + | chr1_3:62085276-62085295 | None:intergenic | 40.0% | |
| ! | CGAGGCATTCAATGTGAAAA+GGG | + | chr1_3:62085409-62085428 | None:intergenic | 40.0% |
| ! | CCTTTTCACATTGAATGCCT+CGG | - | chr1_3:62085407-62085426 | Msa0131310:intron | 40.0% |
| AGGCTTATACTATTCTGCAC+TGG | - | chr1_3:62085586-62085605 | Msa0131310:five_prime_UTR | 40.0% | |
| TGTCTCTTGCAATCTCCGAA+AGG | - | chr1_3:62082527-62082546 | Msa0131310:three_prime_UTR | 45.0% | |
| ! | TTAATGATGGGGAAGGAAGG+AGG | - | chr1_3:62083307-62083326 | Msa0131310:intron | 45.0% |
| ! | TAATGATGGGGAAGGAAGGA+GGG | - | chr1_3:62083308-62083327 | Msa0131310:intron | 45.0% |
| TCCTTAGGTGTCCTTTCTTG+AGG | - | chr1_3:62083573-62083592 | Msa0131310:intron | 45.0% | |
| TCCTCAAGAAAGGACACCTA+AGG | + | chr1_3:62083577-62083596 | None:intergenic | 45.0% | |
| !! | ACAGGCATTGGAAAAGCCAA+AGG | + | chr1_3:62083635-62083654 | None:intergenic | 45.0% |
| CAGCCAAGAGGAAAACTTAC+AGG | + | chr1_3:62083653-62083672 | None:intergenic | 45.0% | |
| AGAGAATCATGTCAGCCAAG+AGG | + | chr1_3:62083665-62083684 | None:intergenic | 45.0% | |
| !!! | AATCGCTTTTTGGCCTGACT+CGG | + | chr1_3:62083793-62083812 | None:intergenic | 45.0% |
| CGCCAAATCCAAATGATGAC+AGG | + | chr1_3:62084207-62084226 | None:intergenic | 45.0% | |
| !! | TTTTCCCTTTCTAGAGGGTG+TGG | - | chr1_3:62084433-62084452 | Msa0131310:intron | 45.0% |
| ! | GCAATGACTGGCTGCAAAAT+GGG | - | chr1_3:62084703-62084722 | Msa0131310:intron | 45.0% |
| CCTGGTATGACTTTGCAATC+GGG | + | chr1_3:62084734-62084753 | None:intergenic | 45.0% | |
| GCCTGGTATGACTTTGCAAT+CGG | + | chr1_3:62084735-62084754 | None:intergenic | 45.0% | |
| ! | GAAGCACTTTACTAACAGCC+TGG | + | chr1_3:62084752-62084771 | None:intergenic | 45.0% |
| AGTGCTTCCACTTGTAGCAA+AGG | - | chr1_3:62084764-62084783 | Msa0131310:intron | 45.0% | |
| TTGTATTTCATACCGGCAGG+AGG | + | chr1_3:62084798-62084817 | None:intergenic | 45.0% | |
| CACTTGTATTTCATACCGGC+AGG | + | chr1_3:62084801-62084820 | None:intergenic | 45.0% | |
| GCGGAGATTCTTTGCAAATG+CGG | + | chr1_3:62084865-62084884 | None:intergenic | 45.0% | |
| ! | TGTGATTGGAATGATGGGGA+TGG | - | chr1_3:62084911-62084930 | Msa0131310:intron | 45.0% |
| ATGGCAGTTAATGTTCCCCT+GGG | - | chr1_3:62084930-62084949 | Msa0131310:intron | 45.0% | |
| TTAATGTTCCCCTGGGTGTA+TGG | - | chr1_3:62084937-62084956 | Msa0131310:intron | 45.0% | |
| ATGTTCTCTCCATACACCCA+GGG | + | chr1_3:62084949-62084968 | None:intergenic | 45.0% | |
| TATGTTCTCTCCATACACCC+AGG | + | chr1_3:62084950-62084969 | None:intergenic | 45.0% | |
| GGGTGTATGGAGAGAACATA+CGG | - | chr1_3:62084950-62084969 | Msa0131310:intron | 45.0% | |
| ! | CGGAGAAATTTTCACCGTCA+TGG | - | chr1_3:62084970-62084989 | Msa0131310:intron | 45.0% |
| CTATGAATGGAACAGCTGCA+TGG | + | chr1_3:62085007-62085026 | None:intergenic | 45.0% | |
| CTTGATGCCTAAATCAGCGA+TGG | - | chr1_3:62085046-62085065 | Msa0131310:intron | 45.0% | |
| TTGCAGCAACCACCTTCAAA+CGG | + | chr1_3:62085130-62085149 | None:intergenic | 45.0% | |
| !! | TGTTGGTTCGGTTCAGTTAC+CGG | - | chr1_3:62085178-62085197 | Msa0131310:intron | 45.0% |
| CCAACATCAGGTTTAACCAC+CGG | + | chr1_3:62085200-62085219 | None:intergenic | 45.0% | |
| AACTGAACCGAACCAACATC+AGG | + | chr1_3:62085176-62085195 | None:intergenic | 45.0% | |
| !! | TGTTGGTTCGGTTCAGTTAC+CGG | - | chr1_3:62085178-62085197 | Msa0131310:intron | 45.0% |
| ! | CCGAGGCATTCAATGTGAAA+AGG | + | chr1_3:62085410-62085429 | None:intergenic | 45.0% |
| AGAAAACAATTTGCCAGCCG+AGG | + | chr1_3:62085427-62085446 | None:intergenic | 45.0% | |
| CAAGAGACACACGCCAATTG+TGG | + | chr1_3:62082516-62082535 | None:intergenic | 50.0% | |
| ! | AATGATGGGGAAGGAAGGAG+GGG | - | chr1_3:62083309-62083328 | Msa0131310:intron | 50.0% |
| ! | AGGCTTTTCCATGGGAGTGA+TGG | - | chr1_3:62084076-62084095 | Msa0131310:intron | 50.0% |
| GAACTACACCATCACTCCCA+TGG | + | chr1_3:62084087-62084106 | None:intergenic | 50.0% | |
| AATTGGGACTTCGGAGCTTC+AGG | + | chr1_3:62084151-62084170 | None:intergenic | 50.0% | |
| ! | TTTGGATTTGGCGGGCCTTT+CGG | - | chr1_3:62084214-62084233 | Msa0131310:intron | 50.0% |
| ! | TCCACCACACCCTCTAGAAA+GGG | + | chr1_3:62084440-62084459 | None:intergenic | 50.0% |
| ! | TTCCACCACACCCTCTAGAA+AGG | + | chr1_3:62084441-62084460 | None:intergenic | 50.0% |
| TCAGGATGGTTCGAAGCATG+AGG | - | chr1_3:62084677-62084696 | Msa0131310:intron | 50.0% | |
| ! | GGCAATGACTGGCTGCAAAA+TGG | - | chr1_3:62084702-62084721 | Msa0131310:intron | 50.0% |
| CCCGATTGCAAAGTCATACC+AGG | - | chr1_3:62084731-62084750 | Msa0131310:intron | 50.0% | |
| AAGGTTATTCAGCCTCCTGC+CGG | - | chr1_3:62084783-62084802 | Msa0131310:intron | 50.0% | |
| GTGCCCACAGGTAATAGTTG+AGG | - | chr1_3:62084818-62084837 | Msa0131310:intron | 50.0% | |
| GGGCCTCAACTATTACCTGT+GGG | + | chr1_3:62084824-62084843 | None:intergenic | 50.0% | |
| CACAGGTAATAGTTGAGGCC+CGG | - | chr1_3:62084823-62084842 | Msa0131310:intron | 50.0% | |
| ACAGGTAATAGTTGAGGCCC+GGG | - | chr1_3:62084824-62084843 | Msa0131310:intron | 50.0% | |
| ! | AACTTTTGTCGGCAAGCCCT+GGG | + | chr1_3:62084889-62084908 | None:intergenic | 50.0% |
| GATGGCAGTTAATGTTCCCC+TGG | - | chr1_3:62084929-62084948 | Msa0131310:intron | 50.0% | |
| TGTTCTCTCCATACACCCAG+GGG | + | chr1_3:62084948-62084967 | None:intergenic | 50.0% | |
| TGGACAGCGACAAACCATGA+CGG | + | chr1_3:62084987-62085006 | None:intergenic | 50.0% | |
| !! | AGCTGAGAGGTACCGTTTGA+AGG | - | chr1_3:62085115-62085134 | Msa0131310:intron | 50.0% |
| !! | TGAGAGGTACCGTTTGAAGG+TGG | - | chr1_3:62085118-62085137 | Msa0131310:intron | 50.0% |
| CCGGTGGTTAAACCTGATGT+TGG | - | chr1_3:62085197-62085216 | Msa0131310:intron | 50.0% | |
| ! | GTGGTGATGAGGCCATTAAG+TGG | - | chr1_3:62085261-62085280 | Msa0131310:intron | 50.0% |
| TTCACATTGAATGCCTCGGC+TGG | - | chr1_3:62085411-62085430 | Msa0131310:intron | 50.0% | |
| GGAAGGAGGGGTAGGATTCA+AGG | - | chr1_3:62083321-62083340 | Msa0131310:intron | 55.0% | |
| GTTGCTGCCTTTGCAGCCAA+AGG | + | chr1_3:62084178-62084197 | None:intergenic | 55.0% | |
| ! | TCCCTTTCTAGAGGGTGTGG+TGG | - | chr1_3:62084436-62084455 | Msa0131310:intron | 55.0% |
| GATGGTTCGAAGCATGAGGC+AGG | - | chr1_3:62084681-62084700 | Msa0131310:intron | 55.0% | |
| AGCATGAGGCAGGCAATGAC+TGG | - | chr1_3:62084691-62084710 | Msa0131310:intron | 55.0% | |
| CGGGCCTCAACTATTACCTG+TGG | + | chr1_3:62084825-62084844 | None:intergenic | 55.0% | |
| ! | ACTTTTGTCGGCAAGCCCTG+GGG | + | chr1_3:62084888-62084907 | None:intergenic | 55.0% |
| ! | GAACTTTTGTCGGCAAGCCC+TGG | + | chr1_3:62084890-62084909 | None:intergenic | 55.0% |
| !! | CAGCTCTGGAGCCGATTACT+TGG | + | chr1_3:62085100-62085119 | None:intergenic | 55.0% |
| ! | TAATCGGCTCCAGAGCTGAG+AGG | - | chr1_3:62085102-62085121 | Msa0131310:intron | 55.0% |
| CAAACGGTACCTCTCAGCTC+TGG | + | chr1_3:62085114-62085133 | None:intergenic | 55.0% | |
| !! | TGGTTCGGTTCAGTTACCGG+TGG | - | chr1_3:62085181-62085200 | Msa0131310:intron | 55.0% |
| !! | TGGTTCGGTTCAGTTACCGG+TGG | - | chr1_3:62085181-62085200 | Msa0131310:intron | 55.0% |
| ! | AGACAGGCACTGTGGTGATG+AGG | - | chr1_3:62085250-62085269 | Msa0131310:intron | 55.0% |
| GCTGTCAGCTGAAGAGAAGC+TGG | + | chr1_3:62085290-62085309 | None:intergenic | 55.0% | |
| ATGGGGAAGGAAGGAGGGGT+AGG | - | chr1_3:62083313-62083332 | Msa0131310:intron | 60.0% | |
| ACACAGGCGCGTGCAGCTAA+AGG | - | chr1_3:62084013-62084032 | Msa0131310:intron | 60.0% | |
| GGTAATAGTTGAGGCCCGGG+CGG | - | chr1_3:62084827-62084846 | Msa0131310:intron | 60.0% | |
| TGCAAAGAATCTCCGCCCCC+AGG | - | chr1_3:62084869-62084888 | Msa0131310:intron | 60.0% | |
| GCAAAGAATCTCCGCCCCCA+GGG | - | chr1_3:62084870-62084889 | Msa0131310:intron | 60.0% | |
| ! | CTTTTGTCGGCAAGCCCTGG+GGG | + | chr1_3:62084887-62084906 | None:intergenic | 60.0% |
| GGTGCGTGCTATAGCCGCCC+GGG | + | chr1_3:62084844-62084863 | None:intergenic | 70.0% | |
| CGGTGCGTGCTATAGCCGCC+CGG | + | chr1_3:62084845-62084864 | None:intergenic | 70.0% | |
| TTGTCGGCAAGCCCTGGGGG+CGG | + | chr1_3:62084884-62084903 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62082256 | 62085707 | 62082256 | ID=Msa0131310;Name=Msa0131310 |
| chr1_3 | mRNA | 62082256 | 62085707 | 62082256 | ID=Msa0131310-mRNA-1;Parent=Msa0131310;Name=Msa0131310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=317|1|1|1|0.66|0.5|4|370|355 |
| chr1_3 | exon | 62082256 | 62083282 | 62082256 | ID=Msa0131310-mRNA-1:exon:20626;Parent=Msa0131310-mRNA-1 |
| chr1_3 | exon | 62083651 | 62083944 | 62083651 | ID=Msa0131310-mRNA-1:exon:20625;Parent=Msa0131310-mRNA-1 |
| chr1_3 | exon | 62084311 | 62084451 | 62084311 | ID=Msa0131310-mRNA-1:exon:20624;Parent=Msa0131310-mRNA-1 |
| chr1_3 | exon | 62085415 | 62085707 | 62085415 | ID=Msa0131310-mRNA-1:exon:20623;Parent=Msa0131310-mRNA-1 |
| chr1_3 | five_prime_UTR | 62085415 | 62085707 | 62085415 | ID=Msa0131310-mRNA-1:five_prime_utr;Parent=Msa0131310-mRNA-1 |
| chr1_3 | five_prime_UTR | 62084428 | 62084451 | 62084428 | ID=Msa0131310-mRNA-1:five_prime_utr;Parent=Msa0131310-mRNA-1 |
| chr1_3 | CDS | 62084311 | 62084427 | 62084311 | ID=Msa0131310-mRNA-1:cds;Parent=Msa0131310-mRNA-1 |
| chr1_3 | CDS | 62083651 | 62083944 | 62083651 | ID=Msa0131310-mRNA-1:cds;Parent=Msa0131310-mRNA-1 |
| chr1_3 | CDS | 62082626 | 62083282 | 62082626 | ID=Msa0131310-mRNA-1:cds;Parent=Msa0131310-mRNA-1 |
| chr1_3 | three_prime_UTR | 62082256 | 62082625 | 62082256 | ID=Msa0131310-mRNA-1:three_prime_utr;Parent=Msa0131310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
