AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038370 MtrunA17_Chr1g0201941 91.806 659 27 7 1 654 1 637 0.0 1059
Msa0038370 MtrunA17_Chr6g0463941 53.846 624 204 15 1 587 1 577 5.30e-162 479
Msa0038370 MtrunA17_Chr1g0201911 44.793 605 224 12 2 601 3 502 6.65e-143 427
Msa0038370 MtrunA17_Chr2g0290511 36.556 331 170 8 246 575 76 367 9.45e-52 183
Msa0038370 MtrunA17_Chr2g0290511 43.820 89 47 2 59 145 261 348 1.80e-16 81.6
Msa0038370 MtrunA17_Chr1g0198171 33.654 312 155 10 59 363 113 379 4.53e-40 154
Msa0038370 MtrunA17_Chr1g0198171 40.541 111 62 3 452 559 94 203 6.39e-19 90.5
Msa0038370 MtrunA17_Chr7g0273941 34.164 281 135 7 289 560 241 480 1.38e-39 152
Msa0038370 MtrunA17_Chr7g0273941 44.792 96 43 2 60 145 381 476 3.49e-17 85.1
Msa0038370 MtrunA17_Chr7g0265831 61.165 103 38 2 60 161 115 216 1.29e-32 131
Msa0038370 MtrunA17_Chr7g0265831 43.617 94 51 2 467 559 112 204 5.99e-17 84.0
Msa0038370 MtrunA17_Chr7g0265831 43.750 80 45 0 285 364 285 364 9.63e-14 73.9
Msa0038370 MtrunA17_Chr1g0179191 66.667 87 28 1 60 145 131 217 1.58e-31 129
Msa0038370 MtrunA17_Chr1g0179191 40.602 133 65 5 462 592 122 242 8.98e-20 93.2
Msa0038370 MtrunA17_Chr1g0179191 37.607 117 65 2 257 365 254 370 1.13e-14 77.0
Msa0038370 MtrunA17_Chr1g0190851 56.250 112 47 1 470 579 418 529 6.45e-28 118
Msa0038370 MtrunA17_Chr1g0190851 41.000 100 56 2 49 145 407 506 1.68e-16 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038370 AT1G76890.2 44.464 569 207 15 57 604 38 518 4.15e-140 421
Msa0038370 AT1G76890.2 44.086 93 51 1 464 556 35 126 3.72e-18 89.0
Msa0038370 AT1G76880.1 65.584 154 46 3 446 593 381 533 2.73e-59 210
Msa0038370 AT1G76880.1 46.739 92 48 1 465 556 56 146 1.26e-18 90.5
Msa0038370 AT1G76880.1 41.000 100 54 2 55 149 403 502 7.65e-18 87.8
Msa0038370 AT5G03680.1 30.556 504 223 12 60 551 119 507 8.52e-57 202
Msa0038370 AT5G03680.1 44.944 89 47 2 470 557 119 206 9.01e-18 87.8
Msa0038370 AT5G28300.1 36.429 280 144 7 289 557 300 556 8.95e-47 175
Msa0038370 AT5G28300.1 40.385 104 51 2 53 145 452 555 5.96e-16 82.0
Msa0038370 AT3G10000.1 33.815 346 163 9 35 374 59 344 1.61e-42 160
Msa0038370 AT3G10000.1 43.434 99 55 1 462 559 80 178 8.13e-21 96.7
Msa0038370 AT1G33240.3 66.972 109 31 2 59 165 61 166 8.51e-40 155
Msa0038370 AT1G33240.1 66.972 109 31 2 59 165 61 166 1.76e-39 154
Msa0038370 AT3G10000.2 32.754 345 158 9 35 374 59 334 8.22e-39 150
Msa0038370 AT3G10000.2 40.816 98 49 1 462 559 80 168 3.37e-18 88.6
Msa0038370 AT5G47660.1 52.632 95 43 1 470 564 303 395 4.50e-23 102
Msa0038370 AT5G47660.1 41.000 100 53 3 60 158 303 397 3.40e-14 75.5
Msa0038370 AT1G33240.2 62.162 74 23 2 94 165 57 127 8.00e-19 91.3
Msa0038370 AT1G33240.2 42.529 87 49 1 60 145 396 482 5.12e-17 85.5
Msa0038370 AT3G25990.1 34.409 93 60 1 471 562 55 147 1.15e-11 67.4

Find 212 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTTGCTTCTGTTAT+TGG 0.191531 1_1:+67833222 None:intergenic
TATCTTAACTCTTCTCTAAT+TGG 0.207615 1_1:+67831489 None:intergenic
TTTCGAGATGCAAGTGTTAA+AGG 0.236888 1_1:-67834505 Msa0038370:CDS
GTAGGATTCATATTGATAAT+TGG 0.247032 1_1:+67833114 None:intergenic
GTTGGGCCCAACTTGGTTGC+CGG 0.251390 1_1:+67832490 None:intergenic
TTTAAGCATACGATCGGATA+TGG 0.256367 1_1:-67834536 Msa0038370:CDS
GGTGCAGCTGCTGCTGCTGC+TGG 0.268164 1_1:+67834697 None:intergenic
ACAACAATTGGTGACGAATA+TGG 0.270177 1_1:-67832446 Msa0038370:CDS
AGCAATAGAGACCTTAATTA+AGG 0.274675 1_1:-67831431 Msa0038370:three_prime_UTR
GGTGATGGTGGTTGTGGTTG+TGG 0.281851 1_1:-67831692 Msa0038370:three_prime_UTR
TCCTCCCATAGAGGACCTTT+TGG 0.292057 1_1:+67832292 None:intergenic
TCAGTTGGATGCTTTGTATA+AGG 0.314622 1_1:-67832122 Msa0038370:CDS
ATAAAATACAACCTTAATTA+AGG 0.315567 1_1:+67831420 None:intergenic
ATGTTTATGGTGGTGTAAAT+TGG 0.318061 1_1:-67831383 Msa0038370:three_prime_UTR
GGATTTGCAGAGGAGATTCT+TGG 0.318376 1_1:-67832863 Msa0038370:CDS
GAGAAGGAGCAGCTGCAAAA+AGG 0.318992 1_1:-67831790 Msa0038370:three_prime_UTR
AGCAAAACCACCACAAATTT+CGG 0.324820 1_1:-67833289 Msa0038370:CDS
AAGAAGATGATGAAGAAGAT+AGG 0.325848 1_1:-67831907 Msa0038370:CDS
GCATCCAACTGATGAAAATA+AGG 0.337506 1_1:+67832133 None:intergenic
GATGGTGGTGATGGTGGTTG+TGG 0.340255 1_1:-67831698 Msa0038370:three_prime_UTR
GAAGTAGGGTTTGTTGTTGA+TGG 0.341682 1_1:+67833060 None:intergenic
GGTGGTTGTGGTTGTGGTGG+AGG 0.344192 1_1:-67831686 Msa0038370:three_prime_UTR
ATGGACCAAAAGGTCCTCTA+TGG 0.346770 1_1:-67832297 Msa0038370:CDS
TTAACTTGTACCACTGATAT+TGG 0.352534 1_1:+67832538 None:intergenic
GCAATGGCGGCCACCTCAGC+AGG 0.356286 1_1:-67832002 Msa0038370:CDS
GGACATGTCTTTGAATCTTC+GGG 0.356338 1_1:+67832154 None:intergenic
AGGACATGTCTTTGAATCTT+CGG 0.357417 1_1:+67832153 None:intergenic
TCCTTCTTCCGTTGTGTCTT+CGG 0.361358 1_1:+67832957 None:intergenic
GAAGGATTGGATGGGATTGT+AGG 0.364446 1_1:+67833096 None:intergenic
CCACCTTCCGCCGTCATGTT+AGG 0.366216 1_1:+67834673 None:intergenic
TTGGGCCCAACTTGGTTGCC+GGG 0.367395 1_1:+67832491 None:intergenic
CAACGGTGCCGCCATGCTCT+CGG 0.368345 1_1:+67832042 None:intergenic
ATTGTTGTTGCTGGTGTTGC+GGG 0.369324 1_1:+67832461 None:intergenic
ACCGCCAGCACAACCACCCC+CGG 0.371351 1_1:-67832509 Msa0038370:CDS
GATGAAAGTGGTGGTGGTGG+TGG 0.373035 1_1:-67831884 Msa0038370:CDS
CTCGAAAGAGGAAGCGGAAA+TGG 0.374520 1_1:-67832933 Msa0038370:CDS
CTCTCTTTCTATGTGTCCTA+TGG 0.374852 1_1:+67834949 None:intergenic
GCGGAAGGTGGTGGTGGTGG+TGG 0.380166 1_1:-67834661 Msa0038370:CDS
TCGTCACCAATTGTTGTTGC+TGG 0.391070 1_1:+67832452 None:intergenic
GAGCATGGCGGCACCGTTGA+TGG 0.394589 1_1:-67832038 Msa0038370:CDS
AATAGATCTGTAGAAATGTT+AGG 0.398303 1_1:+67833015 None:intergenic
GGTTGTGGTTGTGGTGGAGG+AGG 0.405531 1_1:-67831683 Msa0038370:three_prime_UTR
TGCTCTCGGGCTGCACCACC+TGG 0.410175 1_1:+67832056 None:intergenic
TGGTGGTGGTGGTAACTTTG+AGG 0.417578 1_1:-67831870 Msa0038370:CDS
TGAAGAACCTCGGTTACAAT+AGG 0.426544 1_1:-67832255 Msa0038370:CDS
GTAGGAGCTAGCCATGGAAT+TGG 0.427286 1_1:+67832990 None:intergenic
ACGGCGGAAGGTGGTGGTGG+TGG 0.432204 1_1:-67834664 Msa0038370:CDS
AGTGCTTGAACTTCAACTTT+CGG 0.432707 1_1:+67832361 None:intergenic
ATCAGGAAGCTAGCAGAACT+TGG 0.434480 1_1:-67833495 Msa0038370:intron
GGAAGAGGGTTGGTGGAAGT+AGG 0.435197 1_1:+67833045 None:intergenic
TGGACAGGAAGAAGAAGATA+TGG 0.441742 1_1:-67831954 Msa0038370:CDS
GAAGAGGGTTGGTGGAAGTA+GGG 0.442303 1_1:+67833046 None:intergenic
TAACAATGGTGAGACTTTCA+TGG 0.445045 1_1:-67832407 Msa0038370:CDS
GATTCATATTGATAATTGGT+TGG 0.446345 1_1:+67833118 None:intergenic
AACGTAGCTTCGGTGGTAAC+CGG 0.450832 1_1:-67834585 Msa0038370:CDS
TAGGGTTTGTTGTTGATGGT+TGG 0.451052 1_1:+67833064 None:intergenic
GTTACAATAGGAATGCAAAA+AGG 0.452050 1_1:-67832243 Msa0038370:CDS
GATGCTTTGTATAAGGAGAA+AGG 0.452352 1_1:-67832115 Msa0038370:CDS
GCTACACTTCTTTGTGGTGG+TGG 0.452786 1_1:+67832586 None:intergenic
ATTCATATTGATAATTGGTT+GGG 0.453777 1_1:+67833119 None:intergenic
TCAGAGAGTGATGTTGAAAG+AGG 0.453881 1_1:-67834625 Msa0038370:CDS
AACGGTGCCGCCATGCTCTC+GGG 0.453957 1_1:+67832043 None:intergenic
GCAACACCAGCAACAACAAT+TGG 0.455453 1_1:-67832458 Msa0038370:CDS
TGGTGTTGCGGGACTATTGT+TGG 0.455975 1_1:+67832472 None:intergenic
ATTGCGGAACAACAAAATCT+AGG 0.456470 1_1:-67832685 Msa0038370:CDS
AAGTTTCTTGTCGCGGCCAC+CGG 0.458447 1_1:+67834566 None:intergenic
AGAAGATGATGAAGAAGATA+GGG 0.459559 1_1:-67831906 Msa0038370:CDS
AAAAGATGGAAGAGGGTTGG+TGG 0.469141 1_1:+67833038 None:intergenic
AGGGATGAAAGTGGTGGTGG+TGG 0.470767 1_1:-67831887 Msa0038370:CDS
GTAGAAATGTTAGGAAAAGA+TGG 0.472744 1_1:+67833024 None:intergenic
GTTGGTGCTACACTTCTTTG+TGG 0.473011 1_1:+67832580 None:intergenic
GGTGGCCGCCATTGCTGCTC+CGG 0.473929 1_1:+67832010 None:intergenic
GATGGTGGTTGTGGTTGTGG+TGG 0.475121 1_1:-67831689 Msa0038370:three_prime_UTR
AAAATAGTTGAAGGATTGGA+TGG 0.481737 1_1:+67833087 None:intergenic
CTTTGTGGGATGAAGTTTCA+AGG 0.482165 1_1:-67834480 Msa0038370:intron
GGTGTTGCGGGACTATTGTT+GGG 0.486909 1_1:+67832473 None:intergenic
ATGACGGCGGAAGGTGGTGG+TGG 0.488218 1_1:-67834667 Msa0038370:CDS
GACTATTGTTGGGCCCAACT+TGG 0.490563 1_1:+67832483 None:intergenic
TGCATTTCTTTGAACTTCTG+TGG 0.490979 1_1:+67833469 None:intergenic
TTGGAAAATAGTTGAAGGAT+TGG 0.493708 1_1:+67833083 None:intergenic
AAATTGGACAAGATTATTTG+AGG 0.496020 1_1:-67831367 Msa0038370:three_prime_UTR
GGTGGTGCAGCCCGAGAGCA+TGG 0.499156 1_1:-67832053 Msa0038370:CDS
TGCAAAGAATCAATAGAGAG+AGG 0.504131 1_1:-67832777 Msa0038370:CDS
TATCTTCTTCTTCCTGTCCA+CGG 0.504848 1_1:+67831957 None:intergenic
GTCGAGGAGGATGGTGGTGA+TGG 0.505301 1_1:-67831707 Msa0038370:three_prime_UTR
GGTTGATGTTGATGAGTTGA+AGG 0.511906 1_1:+67833321 None:intergenic
CAAGCTGATGCACCCACTGC+AGG 0.513358 1_1:+67831833 None:intergenic
TACCAAGAGAATGGACCAAA+AGG 0.516965 1_1:-67832307 Msa0038370:CDS
GACAACAAGTACCAAGAGAA+TGG 0.517884 1_1:-67832316 Msa0038370:CDS
TGTGTTTGTTGTGGTGGCGG+TGG 0.518161 1_1:+67832631 None:intergenic
AATTGTTGTTGCTGGTGTTG+CGG 0.524953 1_1:+67832460 None:intergenic
TGGGCCCAACTTGGTTGCCG+GGG 0.525453 1_1:+67832492 None:intergenic
TTGTATAAGGAGAAAGGAAA+GGG 0.527542 1_1:-67832109 Msa0038370:CDS
TGGTGGTAACTTTGAGGTAG+TGG 0.527717 1_1:-67831864 Msa0038370:CDS
TCCGAAGACACAACGGAAGA+AGG 0.527908 1_1:-67832958 Msa0038370:CDS
TGGTTCAGCCGGAGCAGCAA+TGG 0.533323 1_1:-67832018 Msa0038370:CDS
GAAAATTCTAGTGGTGGAGC+TGG 0.535467 1_1:-67832085 Msa0038370:CDS
GGGCCCAACTTGGTTGCCGG+GGG 0.537475 1_1:+67832493 None:intergenic
CTTTCTATGTGTCCTATGGA+AGG 0.537762 1_1:+67834953 None:intergenic
ATTGGTGCTACCGCCGGTGT+TGG 0.539807 1_1:+67832556 None:intergenic
TGCTCCGGCTGAACCATCAA+CGG 0.540154 1_1:+67832025 None:intergenic
TGTTGTGTTTGTTGTGGTGG+CGG 0.542486 1_1:+67832628 None:intergenic
GAGGAGGATGGTGGTGATGG+TGG 0.543422 1_1:-67831704 Msa0038370:three_prime_UTR
GAAGATGGTGAACGTAGCTT+CGG 0.543473 1_1:-67834595 Msa0038370:CDS
GGTTGGTATGAAAATGATCA+AGG 0.547374 1_1:+67833343 None:intergenic
GATAGGGATGAAAGTGGTGG+TGG 0.549944 1_1:-67831890 Msa0038370:CDS
ATGTTAGGAAAAGATGGAAG+AGG 0.551505 1_1:+67833030 None:intergenic
GCTACCGCCGGTGTTGGTGT+TGG 0.551728 1_1:+67832562 None:intergenic
GTGGCCGCGACAAGAAACTT+TGG 0.552103 1_1:-67834563 Msa0038370:CDS
AAGGATCTCGAAAGAGGAAG+CGG 0.554153 1_1:-67832939 Msa0038370:CDS
TGGTGGAGCTGGTTCGAACC+AGG 0.556702 1_1:-67832074 Msa0038370:CDS
TGTTGTTGTGTTTGTTGTGG+TGG 0.557187 1_1:+67832625 None:intergenic
AGGAAAAGATGGAAGAGGGT+TGG 0.558092 1_1:+67833035 None:intergenic
TGTTGTTGTTGTGTTTGTTG+TGG 0.560673 1_1:+67832622 None:intergenic
CAAGTGTTAAAGGTCCTTTG+TGG 0.560707 1_1:-67834495 Msa0038370:CDS
GGCACCGTTGATGGTTCAGC+CGG 0.560808 1_1:-67832029 Msa0038370:CDS
CCACCTAACATGACGGCGGA+AGG 0.561648 1_1:-67834676 Msa0038370:CDS
TTCAGCCGGAGCAGCAATGG+CGG 0.565524 1_1:-67832015 Msa0038370:CDS
CGGAAGAAGGATCTCGAAAG+AGG 0.566261 1_1:-67832945 Msa0038370:CDS
TTTGTATAAGGAGAAAGGAA+AGG 0.568622 1_1:-67832110 Msa0038370:CDS
TGGAAGAATTTGAATATGTA+CGG 0.571673 1_1:-67831647 Msa0038370:three_prime_UTR
GATGGTTGGAAAATAGTTGA+AGG 0.571791 1_1:+67833078 None:intergenic
GGTGCTACACTTCTTTGTGG+TGG 0.573648 1_1:+67832583 None:intergenic
GATGGTGAACGTAGCTTCGG+TGG 0.573832 1_1:-67834592 Msa0038370:CDS
GAAAGTGACAGAGAAGCAAG+AGG 0.574790 1_1:-67832884 Msa0038370:CDS
CATGGAGCAGAACCGTGGAC+AGG 0.575210 1_1:-67831969 Msa0038370:CDS
AAAGATATCTCCTCCCATAG+AGG 0.576930 1_1:+67832283 None:intergenic
TTTGAGGAGGGAAATTTGAT+GGG 0.577134 1_1:-67831607 Msa0038370:three_prime_UTR
TTTGCAGAGGAGATTCTTGG+AGG 0.578270 1_1:-67832860 Msa0038370:CDS
AAAATAAGAGAAACTATGCT+AGG 0.578777 1_1:-67834757 Msa0038370:exon
TTGCATTCCTATTGTAACCG+AGG 0.579636 1_1:+67832248 None:intergenic
GAAAGAGGAAGAGTTGAAGA+TGG 0.580801 1_1:-67834610 Msa0038370:CDS
TTGAGGAGGGAAATTTGATG+GGG 0.580811 1_1:-67831606 Msa0038370:three_prime_UTR
AGCGCCAAAGTTTCTTGTCG+CGG 0.581032 1_1:+67834559 None:intergenic
GCAGGAGTTGTCGAGGAGGA+TGG 0.585356 1_1:-67831716 Msa0038370:three_prime_UTR
ATGTTGATGAGTTGAAGGGT+TGG 0.585562 1_1:+67833326 None:intergenic
GGTGGGGTCATAGATAGTGC+AGG 0.587167 1_1:-67831734 Msa0038370:three_prime_UTR
ATAATAAATTCACCTTCCAT+AGG 0.587233 1_1:-67834965 None:intergenic
AACAATGGTGAGACTTTCAT+GGG 0.588661 1_1:-67832406 Msa0038370:CDS
GGTCATTGAGAAACGCGAGC+AGG 0.589179 1_1:-67832839 Msa0038370:CDS
AAAGAGGAAGCGGAAATGGA+AGG 0.590185 1_1:-67832929 Msa0038370:CDS
AGATCTATTATCCAATTCCA+TGG 0.590202 1_1:-67833001 Msa0038370:CDS
AAGTGTTAAAGGTCCTTTGT+GGG 0.591969 1_1:-67834494 Msa0038370:CDS
ACTGATATTGGTGCTACCGC+CGG 0.592470 1_1:+67832550 None:intergenic
TATCACAAGAGAACCAAAGA+TGG 0.592914 1_1:-67833420 Msa0038370:CDS
AAATAGTTGAAGGATTGGAT+GGG 0.593793 1_1:+67833088 None:intergenic
TGGACCAAAAGGTCCTCTAT+GGG 0.594236 1_1:-67832296 Msa0038370:CDS
TAGTATAGTAGCTAGTGAGA+AGG 0.594977 1_1:-67831806 Msa0038370:three_prime_UTR
GCAAAGAATCAATAGAGAGA+GGG 0.595028 1_1:-67832776 Msa0038370:CDS
TGTTAGGAAAAGATGGAAGA+GGG 0.595844 1_1:+67833031 None:intergenic
ATGTTATCTTCTCCCTGCTG+AGG 0.596975 1_1:+67831989 None:intergenic
ATGGTGAGACTTTCATGGGA+GGG 0.597885 1_1:-67832402 Msa0038370:CDS
CCTTCCGCCGTCATGTTAGG+TGG 0.598899 1_1:+67834676 None:intergenic
ATGTACGGTGGAATGACACA+TGG 0.599343 1_1:-67831632 Msa0038370:three_prime_UTR
GAGGAGGAGAGATTCTCTTG+TGG 0.600742 1_1:-67831667 Msa0038370:three_prime_UTR
GGTGTTGGTGCCGAAATTTG+TGG 0.601888 1_1:+67833279 None:intergenic
TGTAGCACCAACACCAACAC+CGG 0.603439 1_1:-67832569 Msa0038370:CDS
AGATAGTGCAGGAGTTGTCG+AGG 0.606737 1_1:-67831723 Msa0038370:three_prime_UTR
AGAAGCAACAATGTCACAAG+TGG 0.606912 1_1:-67833214 Msa0038370:CDS
GGCCGAGGTGGAAAATCAGA+TGG 0.609437 1_1:-67833399 Msa0038370:CDS
AGTGGCAAACAAACCTGCAG+TGG 0.609531 1_1:-67831846 Msa0038370:CDS
AGAACCAAAGATGGCCGAGG+TGG 0.611661 1_1:-67833411 Msa0038370:CDS
AACATGACGGCGGAAGGTGG+TGG 0.613643 1_1:-67834670 Msa0038370:CDS
ATGGATGAAGATGATAAAGA+TGG 0.614880 1_1:-67831935 Msa0038370:CDS
AAGAGAACCAAAGATGGCCG+AGG 0.615515 1_1:-67833414 Msa0038370:CDS
GATAAATCTGAGGACGAGCA+TGG 0.616417 1_1:-67832338 Msa0038370:CDS
GAAGAAGATAGGGATGAAAG+TGG 0.616667 1_1:-67831896 Msa0038370:CDS
AGCTGCACCACCTAACATGA+CGG 0.617434 1_1:-67834683 Msa0038370:CDS
AAGAATTTGAATATGTACGG+TGG 0.618964 1_1:-67831644 Msa0038370:three_prime_UTR
TGAGGAGGGAAATTTGATGG+GGG 0.620174 1_1:-67831605 Msa0038370:three_prime_UTR
CCTAACATGACGGCGGAAGG+TGG 0.623080 1_1:-67834673 Msa0038370:CDS
TCAGGAAGCTAGCAGAACTT+GGG 0.624015 1_1:-67833494 Msa0038370:intron
CAATGGCGGCCACCTCAGCA+GGG 0.624870 1_1:-67832001 Msa0038370:CDS
GTTGATGTTGATGAGTTGAA+GGG 0.625077 1_1:+67833322 None:intergenic
GTTGGTATGAAAATGATCAA+GGG 0.626104 1_1:+67833344 None:intergenic
TTATCTTCTCCCTGCTGAGG+TGG 0.627005 1_1:+67831992 None:intergenic
AAGGGAGAAAATTCTAGTGG+TGG 0.630570 1_1:-67832091 Msa0038370:CDS
GTCTTCGGAAGACGTCGAGT+AGG 0.632078 1_1:+67832972 None:intergenic
TCTTTAGCAATGAAGAACCT+CGG 0.632836 1_1:-67832265 Msa0038370:CDS
AGAAGCAAGAGGATTTGCAG+AGG 0.635450 1_1:-67832873 Msa0038370:CDS
AGAGTTAAGATAGAGAGAGT+CGG 0.643314 1_1:-67831478 Msa0038370:three_prime_UTR
GTAGCTTCGGTGGTAACCGG+TGG 0.643526 1_1:-67834582 Msa0038370:CDS
TTCAAGCACTGATAAATCTG+AGG 0.643720 1_1:-67832348 Msa0038370:CDS
TAGTGCAGGAGTTGTCGAGG+AGG 0.646241 1_1:-67831720 Msa0038370:three_prime_UTR
GACGTCTTCCGAAGACACAA+CGG 0.647187 1_1:-67832965 Msa0038370:CDS
TGAAGATGATAAAGATGGTG+AGG 0.649200 1_1:-67831930 Msa0038370:CDS
GTAACAACTTGTGACGGTGT+TGG 0.650468 1_1:+67833264 None:intergenic
GTTGGTGCCGAAATTTGTGG+TGG 0.654114 1_1:+67833282 None:intergenic
TGCATGAGGGATACTTAGAG+TGG 0.657060 1_1:+67833185 None:intergenic
GGAAAGGGAGAAAATTCTAG+TGG 0.661145 1_1:-67832094 Msa0038370:CDS
GTGGCAAACAAACCTGCAGT+GGG 0.663059 1_1:-67831845 Msa0038370:CDS
CGTCGAGTAGGAGCTAGCCA+TGG 0.663851 1_1:+67832984 None:intergenic
ACCAAAAGGTCCTCTATGGG+AGG 0.664112 1_1:-67832293 Msa0038370:CDS
TCAGCAGGGAGAAGATAACA+TGG 0.666074 1_1:-67831987 Msa0038370:CDS
TTGATGGAACAGTTGCATGA+GGG 0.669086 1_1:+67833172 None:intergenic
GAGTTGTTAGAGAAGAAGCG+TGG 0.669199 1_1:-67832813 Msa0038370:CDS
TGGGAGGGATGAGTTCGTCA+AGG 0.669391 1_1:-67832387 Msa0038370:CDS
ATTGATGGAACAGTTGCATG+AGG 0.676758 1_1:+67833171 None:intergenic
GGAGTTGTCGAGGAGGATGG+TGG 0.678808 1_1:-67831713 Msa0038370:three_prime_UTR
GCAGTTGTAACAACTTGTGA+CGG 0.679663 1_1:+67833258 None:intergenic
GATAACATGGAGCAGAACCG+TGG 0.681082 1_1:-67831974 Msa0038370:CDS
ATTGTGAAAGTTGATAACAA+TGG 0.690514 1_1:-67832421 Msa0038370:CDS
AATGGTGAGACTTTCATGGG+AGG 0.694246 1_1:-67832403 Msa0038370:CDS
TGTACGGTGGAATGACACAT+GGG 0.698113 1_1:-67831631 Msa0038370:three_prime_UTR
CTTGAAACTTCATCCCACAA+AGG 0.698850 1_1:+67834481 None:intergenic
GGCGGTAGCACCAATATCAG+TGG 0.699903 1_1:-67832548 Msa0038370:CDS
GAGGGATGAGTTCGTCAAGG+TGG 0.700639 1_1:-67832384 Msa0038370:CDS
TGGAGCTGGTTCGAACCAGG+TGG 0.701524 1_1:-67832071 Msa0038370:CDS
TGCACCACCTAACATGACGG+CGG 0.703359 1_1:-67834680 Msa0038370:CDS
AGCACCAACACCAACACCGG+CGG 0.703596 1_1:-67832566 Msa0038370:CDS
GGTGCAGCCCGAGAGCATGG+CGG 0.703630 1_1:-67832050 Msa0038370:CDS
GAAGATAGGGATGAAAGTGG+TGG 0.737429 1_1:-67831893 Msa0038370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACAAAAATTTAGTTTATT+TGG - chr1_1:67831910-67831929 Msa0038370:CDS 10.0%
!! ATGAAAAAATAAATTAGAAA+AGG + chr1_1:67832141-67832160 None:intergenic 10.0%
!!! TAAAATTTGTTTATTTTTTG+GGG - chr1_1:67834784-67834803 Msa0038370:five_prime_UTR 10.0%
!! AAAAAATAAATTAGAAAAGG+AGG + chr1_1:67832138-67832157 None:intergenic 15.0%
!!! ATTTATTTTTTCATTGCTTT+TGG - chr1_1:67832147-67832166 Msa0038370:CDS 15.0%
!! TAAACAAGAAATAAAAACAT+GGG + chr1_1:67832638-67832657 None:intergenic 15.0%
!! ATAAACAAGAAATAAAAACA+TGG + chr1_1:67832639-67832658 None:intergenic 15.0%
!!! AAAATTTGTTTATTTTTTGG+GGG - chr1_1:67834785-67834804 Msa0038370:five_prime_UTR 15.0%
!! ATAAAATACAACCTTAATTA+AGG + chr1_1:67834901-67834920 None:intergenic 15.0%
!!! TGAATTCTTTGAATTTTGAT+GGG + chr1_1:67831461-67831480 None:intergenic 20.0%
!!! ATTCAAGTTGGTAATTTATT+TGG + chr1_1:67832304-67832323 None:intergenic 20.0%
!! AAAGTAACTGAAATAGATAA+AGG + chr1_1:67832536-67832555 None:intergenic 20.0%
!! ACAAATGCATGATATAAAAA+AGG + chr1_1:67832699-67832718 None:intergenic 20.0%
!! TCTCACTTTAATTATTAATC+AGG - chr1_1:67832806-67832825 Msa0038370:CDS 20.0%
!!! ATTCATATTGATAATTGGTT+GGG + chr1_1:67833202-67833221 None:intergenic 20.0%
!! ATAAACAAAAATGAGTTTGT+TGG - chr1_1:67834563-67834582 Msa0038370:CDS 20.0%
!!! AAATTTGTTTATTTTTTGGG+GGG - chr1_1:67834786-67834805 Msa0038370:five_prime_UTR 20.0%
!!! TTCATCTTGTTTTATGTTTA+TGG - chr1_1:67834922-67834941 Msa0038370:five_prime_UTR 20.0%
!!! GAATTCTTTGAATTTTGATG+GGG + chr1_1:67831460-67831479 None:intergenic 25.0%
!! GTGAATTCTTTGAATTTTGA+TGG + chr1_1:67831462-67831481 None:intergenic 25.0%
! AACTGAGAGAAAAAAAATAG+AGG + chr1_1:67831487-67831506 None:intergenic 25.0%
! AAAATAAGAGAAACTATGCT+AGG - chr1_1:67831561-67831580 Msa0038370:three_prime_UTR 25.0%
! AATACAAAAGACTAAGAAAC+CGG + chr1_1:67832096-67832115 None:intergenic 25.0%
!! ATTAGAAAAGGAGGATTTTA+TGG + chr1_1:67832129-67832148 None:intergenic 25.0%
!!! TATTTTTTCATTGCTTTTGG+TGG - chr1_1:67832150-67832169 Msa0038370:CDS 25.0%
! ATGTGAAGTCTATATGATTT+GGG - chr1_1:67832221-67832240 Msa0038370:CDS 25.0%
!! TTTGATAACTCAATTCAAGT+TGG + chr1_1:67832316-67832335 None:intergenic 25.0%
!! CATTTCTTTTCATCAATTCA+TGG - chr1_1:67832447-67832466 Msa0038370:CDS 25.0%
!! GATTCATATTGATAATTGGT+TGG + chr1_1:67833203-67833222 None:intergenic 25.0%
!! GTAGGATTCATATTGATAAT+TGG + chr1_1:67833207-67833226 None:intergenic 25.0%
! AATAGATCTGTAGAAATGTT+AGG + chr1_1:67833306-67833325 None:intergenic 25.0%
!!! ATTGTGAAAGTTGATAACAA+TGG - chr1_1:67833897-67833916 Msa0038370:intron 25.0%
!! AAAAAGGTGCAAAGAAAAAT+GGG - chr1_1:67834091-67834110 Msa0038370:intron 25.0%
! TGGAAGAATTTGAATATGTA+CGG - chr1_1:67834671-67834690 Msa0038370:CDS 25.0%
! TATCTTAACTCTTCTCTAAT+TGG + chr1_1:67834832-67834851 None:intergenic 25.0%
!!! ATCTTGTTTTATGTTTATGG+TGG - chr1_1:67834925-67834944 Msa0038370:five_prime_UTR 25.0%
! AAATTGGACAAGATTATTTG+AGG - chr1_1:67834951-67834970 Msa0038370:five_prime_UTR 25.0%
TGAGAGAAAAAAAATAGAGG+TGG + chr1_1:67831484-67831503 None:intergenic 30.0%
AAGAAGCAAAAACCAAATGA+TGG + chr1_1:67832070-67832089 None:intergenic 30.0%
!! TTGGTTTTTGCTTCTTTTTC+CGG - chr1_1:67832074-67832093 Msa0038370:CDS 30.0%
GATGTGAAGTCTATATGATT+TGG - chr1_1:67832220-67832239 Msa0038370:CDS 30.0%
!! AGTTGGTAACCGAAATAAAA+GGG + chr1_1:67832357-67832376 None:intergenic 30.0%
AAAATGCATGAACTGAAGTT+AGG + chr1_1:67832417-67832436 None:intergenic 30.0%
! TTCAGTTCATGCATTTTTCA+TGG - chr1_1:67832420-67832439 Msa0038370:CDS 30.0%
! TCAGTTCATGCATTTTTCAT+GGG - chr1_1:67832421-67832440 Msa0038370:CDS 30.0%
AAGTAGTGTTAATTGCAACA+TGG + chr1_1:67832574-67832593 None:intergenic 30.0%
GTTGGTATGAAAATGATCAA+GGG + chr1_1:67832977-67832996 None:intergenic 30.0%
!! GTAGTTGCAATATTGTTTTG+AGG + chr1_1:67833180-67833199 None:intergenic 30.0%
AAATAGTTGAAGGATTGGAT+GGG + chr1_1:67833233-67833252 None:intergenic 30.0%
AAAATAGTTGAAGGATTGGA+TGG + chr1_1:67833234-67833253 None:intergenic 30.0%
TTGGAAAATAGTTGAAGGAT+TGG + chr1_1:67833238-67833257 None:intergenic 30.0%
GTAGAAATGTTAGGAAAAGA+TGG + chr1_1:67833297-67833316 None:intergenic 30.0%
AGATCTATTATCCAATTCCA+TGG - chr1_1:67833317-67833336 Msa0038370:CDS 30.0%
GTCTTTCTTGCAAAAAATTG+CGG - chr1_1:67833617-67833636 Msa0038370:intron 30.0%
!! TTAACTTGTACCACTGATAT+TGG + chr1_1:67833783-67833802 None:intergenic 30.0%
GTTACAATAGGAATGCAAAA+AGG - chr1_1:67834075-67834094 Msa0038370:intron 30.0%
! CAAAAAGGTGCAAAGAAAAA+TGG - chr1_1:67834090-67834109 Msa0038370:intron 30.0%
!!! ATGTCCTTATTTTCATCAGT+TGG - chr1_1:67834181-67834200 Msa0038370:intron 30.0%
TTTGTATAAGGAGAAAGGAA+AGG - chr1_1:67834208-67834227 Msa0038370:intron 30.0%
TTGTATAAGGAGAAAGGAAA+GGG - chr1_1:67834209-67834228 Msa0038370:intron 30.0%
ATGGATGAAGATGATAAAGA+TGG - chr1_1:67834383-67834402 Msa0038370:intron 30.0%
AAGAAGATGATGAAGAAGAT+AGG - chr1_1:67834411-67834430 Msa0038370:intron 30.0%
AGAAGATGATGAAGAAGATA+GGG - chr1_1:67834412-67834431 Msa0038370:intron 30.0%
!! AACAAAAATGAGTTTGTTGG+TGG - chr1_1:67834566-67834585 Msa0038370:CDS 30.0%
!! ACAAAAATGAGTTTGTTGGT+GGG - chr1_1:67834567-67834586 Msa0038370:CDS 30.0%
AAGAATTTGAATATGTACGG+TGG - chr1_1:67834674-67834693 Msa0038370:CDS 30.0%
AGCAATAGAGACCTTAATTA+AGG - chr1_1:67834887-67834906 Msa0038370:five_prime_UTR 30.0%
! ATGTTTATGGTGGTGTAAAT+TGG - chr1_1:67834935-67834954 Msa0038370:five_prime_UTR 30.0%
TTTAAGCATACGATCGGATA+TGG - chr1_1:67831782-67831801 Msa0038370:three_prime_UTR 35.0%
TTTCGAGATGCAAGTGTTAA+AGG - chr1_1:67831813-67831832 Msa0038370:exon 35.0%
AAGTGTTAAAGGTCCTTTGT+GGG - chr1_1:67831824-67831843 Msa0038370:exon 35.0%
ATTCATGTGATGTAGAGATC+TGG - chr1_1:67832023-67832042 Msa0038370:CDS 35.0%
TTCATGTGATGTAGAGATCT+GGG - chr1_1:67832024-67832043 Msa0038370:CDS 35.0%
!! TTCTTTCCCCCCTTTTATTT+CGG - chr1_1:67832345-67832364 Msa0038370:CDS 35.0%
! TTGGTAACCGAAATAAAAGG+GGG + chr1_1:67832355-67832374 None:intergenic 35.0%
!! GTTGGTAACCGAAATAAAAG+GGG + chr1_1:67832356-67832375 None:intergenic 35.0%
!! GAGTTGGTAACCGAAATAAA+AGG + chr1_1:67832358-67832377 None:intergenic 35.0%
AATTGCAACATGGAAATGCA+AGG + chr1_1:67832564-67832583 None:intergenic 35.0%
TGCATTTCTTTGAACTTCTG+TGG + chr1_1:67832852-67832871 None:intergenic 35.0%
TATCACAAGAGAACCAAAGA+TGG - chr1_1:67832898-67832917 Msa0038370:CDS 35.0%
! GGTTGGTATGAAAATGATCA+AGG + chr1_1:67832978-67832997 None:intergenic 35.0%
! GTTGATGTTGATGAGTTGAA+GGG + chr1_1:67832999-67833018 None:intergenic 35.0%
AGCAAAACCACCACAAATTT+CGG - chr1_1:67833029-67833048 Msa0038370:CDS 35.0%
! GACATTGTTGCTTCTGTTAT+TGG + chr1_1:67833099-67833118 None:intergenic 35.0%
!!! TTTTGAGGCACTGAAATTGA+TGG + chr1_1:67833165-67833184 None:intergenic 35.0%
GATGGTTGGAAAATAGTTGA+AGG + chr1_1:67833243-67833262 None:intergenic 35.0%
TGTTAGGAAAAGATGGAAGA+GGG + chr1_1:67833290-67833309 None:intergenic 35.0%
ATGTTAGGAAAAGATGGAAG+AGG + chr1_1:67833291-67833310 None:intergenic 35.0%
TGCAAAGAATCAATAGAGAG+AGG - chr1_1:67833541-67833560 Msa0038370:intron 35.0%
GCAAAGAATCAATAGAGAGA+GGG - chr1_1:67833542-67833561 Msa0038370:intron 35.0%
ATTGCGGAACAACAAAATCT+AGG - chr1_1:67833633-67833652 Msa0038370:intron 35.0%
! TGTTGTTGTTGTGTTTGTTG+TGG + chr1_1:67833699-67833718 None:intergenic 35.0%
!! ACAACAATTGGTGACGAATA+TGG - chr1_1:67833872-67833891 Msa0038370:intron 35.0%
TAACAATGGTGAGACTTTCA+TGG - chr1_1:67833911-67833930 Msa0038370:intron 35.0%
AACAATGGTGAGACTTTCAT+GGG - chr1_1:67833912-67833931 Msa0038370:intron 35.0%
AGTGCTTGAACTTCAACTTT+CGG + chr1_1:67833960-67833979 None:intergenic 35.0%
!! TTCAAGCACTGATAAATCTG+AGG - chr1_1:67833970-67833989 Msa0038370:intron 35.0%
TCTTTAGCAATGAAGAACCT+CGG - chr1_1:67834053-67834072 Msa0038370:intron 35.0%
AGGACATGTCTTTGAATCTT+CGG + chr1_1:67834168-67834187 None:intergenic 35.0%
GCATCCAACTGATGAAAATA+AGG + chr1_1:67834188-67834207 None:intergenic 35.0%
TCAGTTGGATGCTTTGTATA+AGG - chr1_1:67834196-67834215 Msa0038370:intron 35.0%
GATGCTTTGTATAAGGAGAA+AGG - chr1_1:67834203-67834222 Msa0038370:intron 35.0%
TGAAGATGATAAAGATGGTG+AGG - chr1_1:67834388-67834407 Msa0038370:intron 35.0%
TAGTATAGTAGCTAGTGAGA+AGG - chr1_1:67834512-67834531 Msa0038370:CDS 35.0%
!! CAAAAATGAGTTTGTTGGTG+GGG - chr1_1:67834568-67834587 Msa0038370:CDS 35.0%
!! TTTTGAGGAGGGAAATTTGA+TGG - chr1_1:67834710-67834729 Msa0038370:CDS 35.0%
TTTGAGGAGGGAAATTTGAT+GGG - chr1_1:67834711-67834730 Msa0038370:CDS 35.0%
AGAGTTAAGATAGAGAGAGT+CGG - chr1_1:67834840-67834859 Msa0038370:five_prime_UTR 35.0%
CTTTCTATGTGTCCTATGGA+AGG + chr1_1:67831368-67831387 None:intergenic 40.0%
CTCTCTTTCTATGTGTCCTA+TGG + chr1_1:67831372-67831391 None:intergenic 40.0%
TCAGAGAGTGATGTTGAAAG+AGG - chr1_1:67831693-67831712 Msa0038370:three_prime_UTR 40.0%
GAAAGAGGAAGAGTTGAAGA+TGG - chr1_1:67831708-67831727 Msa0038370:three_prime_UTR 40.0%
CAAGTGTTAAAGGTCCTTTG+TGG - chr1_1:67831823-67831842 Msa0038370:exon 40.0%
CTTGAAACTTCATCCCACAA+AGG + chr1_1:67831840-67831859 None:intergenic 40.0%
CTTTGTGGGATGAAGTTTCA+AGG - chr1_1:67831838-67831857 Msa0038370:CDS 40.0%
CTTGCTTCAACTCCATCATT+TGG - chr1_1:67832055-67832074 Msa0038370:CDS 40.0%
TGGTAACCGAAATAAAAGGG+GGG + chr1_1:67832354-67832373 None:intergenic 40.0%
ATTTCGGTTACCAACTCTCA+TGG - chr1_1:67832361-67832380 Msa0038370:CDS 40.0%
TTTCGGTTACCAACTCTCAT+GGG - chr1_1:67832362-67832381 Msa0038370:CDS 40.0%
CTTCAATTTCCCATGAGAGT+TGG + chr1_1:67832374-67832393 None:intergenic 40.0%
! TACCATCTGATTTTCCACCT+CGG + chr1_1:67832924-67832943 None:intergenic 40.0%
! ATGTTGATGAGTTGAAGGGT+TGG + chr1_1:67832995-67833014 None:intergenic 40.0%
! GGTTGATGTTGATGAGTTGA+AGG + chr1_1:67833000-67833019 None:intergenic 40.0%
!! GGTGGTTTTGCTATGTTTTG+AGG + chr1_1:67833021-67833040 None:intergenic 40.0%
GCAGTTGTAACAACTTGTGA+CGG + chr1_1:67833063-67833082 None:intergenic 40.0%
AGAAGCAACAATGTCACAAG+TGG - chr1_1:67833104-67833123 Msa0038370:CDS 40.0%
TTGATGGAACAGTTGCATGA+GGG + chr1_1:67833149-67833168 None:intergenic 40.0%
ATTGATGGAACAGTTGCATG+AGG + chr1_1:67833150-67833169 None:intergenic 40.0%
!! TAGGGTTTGTTGTTGATGGT+TGG + chr1_1:67833257-67833276 None:intergenic 40.0%
!! GAAGTAGGGTTTGTTGTTGA+TGG + chr1_1:67833261-67833280 None:intergenic 40.0%
!! TGTTGTTGTGTTTGTTGTGG+TGG + chr1_1:67833696-67833715 None:intergenic 40.0%
! AATTGTTGTTGCTGGTGTTG+CGG + chr1_1:67833861-67833880 None:intergenic 40.0%
GACAACAAGTACCAAGAGAA+TGG - chr1_1:67834002-67834021 Msa0038370:intron 40.0%
TACCAAGAGAATGGACCAAA+AGG - chr1_1:67834011-67834030 Msa0038370:intron 40.0%
AAAGATATCTCCTCCCATAG+AGG + chr1_1:67834038-67834057 None:intergenic 40.0%
TGAAGAACCTCGGTTACAAT+AGG - chr1_1:67834063-67834082 Msa0038370:intron 40.0%
TTGCATTCCTATTGTAACCG+AGG + chr1_1:67834073-67834092 None:intergenic 40.0%
GGACATGTCTTTGAATCTTC+GGG + chr1_1:67834167-67834186 None:intergenic 40.0%
GGAAAGGGAGAAAATTCTAG+TGG - chr1_1:67834224-67834243 Msa0038370:intron 40.0%
AAGGGAGAAAATTCTAGTGG+TGG - chr1_1:67834227-67834246 Msa0038370:intron 40.0%
TATCTTCTTCTTCCTGTCCA+CGG + chr1_1:67834364-67834383 None:intergenic 40.0%
TGGACAGGAAGAAGAAGATA+TGG - chr1_1:67834364-67834383 Msa0038370:intron 40.0%
GAAGAAGATAGGGATGAAAG+TGG - chr1_1:67834422-67834441 Msa0038370:intron 40.0%
TTGAGGAGGGAAATTTGATG+GGG - chr1_1:67834712-67834731 Msa0038370:CDS 40.0%
!! GGTGACTCAGCTGTTTTAAG+TGG - chr1_1:67831582-67831601 Msa0038370:three_prime_UTR 45.0%
!! GACTCAGCTGTTTTAAGTGG+TGG - chr1_1:67831585-67831604 Msa0038370:three_prime_UTR 45.0%
!! TCAGCTGTTTTAAGTGGTGG+CGG - chr1_1:67831588-67831607 Msa0038370:three_prime_UTR 45.0%
GAAGATGGTGAACGTAGCTT+CGG - chr1_1:67831723-67831742 Msa0038370:three_prime_UTR 45.0%
! GGCGCTTTTAAGCATACGAT+CGG - chr1_1:67831776-67831795 Msa0038370:three_prime_UTR 45.0%
ATCAGGAAGCTAGCAGAACT+TGG - chr1_1:67832823-67832842 Msa0038370:CDS 45.0%
TCAGGAAGCTAGCAGAACTT+GGG - chr1_1:67832824-67832843 Msa0038370:CDS 45.0%
GTAACAACTTGTGACGGTGT+TGG + chr1_1:67833057-67833076 None:intergenic 45.0%
TGCATGAGGGATACTTAGAG+TGG + chr1_1:67833136-67833155 None:intergenic 45.0%
GAAGGATTGGATGGGATTGT+AGG + chr1_1:67833225-67833244 None:intergenic 45.0%
AAAAGATGGAAGAGGGTTGG+TGG + chr1_1:67833283-67833302 None:intergenic 45.0%
AGGAAAAGATGGAAGAGGGT+TGG + chr1_1:67833286-67833305 None:intergenic 45.0%
TCCTTCTTCCGTTGTGTCTT+CGG + chr1_1:67833364-67833383 None:intergenic 45.0%
AAGGATCTCGAAAGAGGAAG+CGG - chr1_1:67833379-67833398 Msa0038370:CDS 45.0%
AAAGAGGAAGCGGAAATGGA+AGG - chr1_1:67833389-67833408 Msa0038370:CDS 45.0%
GAAAGTGACAGAGAAGCAAG+AGG - chr1_1:67833434-67833453 Msa0038370:CDS 45.0%
AGAAGCAAGAGGATTTGCAG+AGG - chr1_1:67833445-67833464 Msa0038370:CDS 45.0%
GGATTTGCAGAGGAGATTCT+TGG - chr1_1:67833455-67833474 Msa0038370:CDS 45.0%
TTTGCAGAGGAGATTCTTGG+AGG - chr1_1:67833458-67833477 Msa0038370:CDS 45.0%
GAGTTGTTAGAGAAGAAGCG+TGG - chr1_1:67833505-67833524 Msa0038370:intron 45.0%
!! TGTTGTGTTTGTTGTGGTGG+CGG + chr1_1:67833693-67833712 None:intergenic 45.0%
!! GTTGGTGCTACACTTCTTTG+TGG + chr1_1:67833741-67833760 None:intergenic 45.0%
!! ATTGTTGTTGCTGGTGTTGC+GGG + chr1_1:67833860-67833879 None:intergenic 45.0%
GCAACACCAGCAACAACAAT+TGG - chr1_1:67833860-67833879 Msa0038370:intron 45.0%
! TCGTCACCAATTGTTGTTGC+TGG + chr1_1:67833869-67833888 None:intergenic 45.0%
AATGGTGAGACTTTCATGGG+AGG - chr1_1:67833915-67833934 Msa0038370:intron 45.0%
ATGGTGAGACTTTCATGGGA+GGG - chr1_1:67833916-67833935 Msa0038370:intron 45.0%
GATAAATCTGAGGACGAGCA+TGG - chr1_1:67833980-67833999 Msa0038370:intron 45.0%
! GACCTTTTGGTCCATTCTCT+TGG + chr1_1:67834016-67834035 None:intergenic 45.0%
ATGGACCAAAAGGTCCTCTA+TGG - chr1_1:67834021-67834040 Msa0038370:intron 45.0%
TGGACCAAAAGGTCCTCTAT+GGG - chr1_1:67834022-67834041 Msa0038370:intron 45.0%
! GAAAATTCTAGTGGTGGAGC+TGG - chr1_1:67834233-67834252 Msa0038370:intron 45.0%
ATGTTATCTTCTCCCTGCTG+AGG + chr1_1:67834332-67834351 None:intergenic 45.0%
TCAGCAGGGAGAAGATAACA+TGG - chr1_1:67834331-67834350 Msa0038370:intron 45.0%
GAAGATAGGGATGAAAGTGG+TGG - chr1_1:67834425-67834444 Msa0038370:intron 45.0%
!! TGGTGGTAACTTTGAGGTAG+TGG - chr1_1:67834454-67834473 Msa0038370:intron 45.0%
AGAAGGAGCAGCTGCAAAAA+GGG - chr1_1:67834529-67834548 Msa0038370:CDS 45.0%
ATGTACGGTGGAATGACACA+TGG - chr1_1:67834686-67834705 Msa0038370:CDS 45.0%
TGTACGGTGGAATGACACAT+GGG - chr1_1:67834687-67834706 Msa0038370:CDS 45.0%
! GGAATGACACATGGGTTTTG+AGG - chr1_1:67834695-67834714 Msa0038370:CDS 45.0%
!!! ATGACACATGGGTTTTGAGG+AGG - chr1_1:67834698-67834717 Msa0038370:CDS 45.0%
!!! TGACACATGGGTTTTGAGGA+GGG - chr1_1:67834699-67834718 Msa0038370:CDS 45.0%
TGAGGAGGGAAATTTGATGG+GGG - chr1_1:67834713-67834732 Msa0038370:CDS 45.0%
!!! TACTTTTTTTTTTTTTTTTT+TGG - chr1_1:67832774-67832793 Msa0038370:CDS 5.0%
!!! TATAAAATTTGTTTATTTTT+TGG - chr1_1:67834782-67834801 Msa0038370:five_prime_UTR 5.0%
!!! ATAAAATTTGTTTATTTTTT+GGG - chr1_1:67834783-67834802 Msa0038370:five_prime_UTR 5.0%
AGCTGCACCACCTAACATGA+CGG - chr1_1:67831635-67831654 Msa0038370:three_prime_UTR 50.0%
AACGTAGCTTCGGTGGTAAC+CGG - chr1_1:67831733-67831752 Msa0038370:three_prime_UTR 50.0%
AGCGCCAAAGTTTCTTGTCG+CGG + chr1_1:67831762-67831781 None:intergenic 50.0%
AAGAGAACCAAAGATGGCCG+AGG - chr1_1:67832904-67832923 Msa0038370:CDS 50.0%
! TTTTCCACCTCGGCCATCTT+TGG + chr1_1:67832914-67832933 None:intergenic 50.0%
!! GTTGGTGCCGAAATTTGTGG+TGG + chr1_1:67833039-67833058 None:intergenic 50.0%
!! GGTGTTGGTGCCGAAATTTG+TGG + chr1_1:67833042-67833061 None:intergenic 50.0%
!! GAAGAGGGTTGGTGGAAGTA+GGG + chr1_1:67833275-67833294 None:intergenic 50.0%
GTAGGAGCTAGCCATGGAAT+TGG + chr1_1:67833331-67833350 None:intergenic 50.0%
GACGTCTTCCGAAGACACAA+CGG - chr1_1:67833353-67833372 Msa0038370:CDS 50.0%
TCCGAAGACACAACGGAAGA+AGG - chr1_1:67833360-67833379 Msa0038370:CDS 50.0%
CGGAAGAAGGATCTCGAAAG+AGG - chr1_1:67833373-67833392 Msa0038370:CDS 50.0%
CTCGAAAGAGGAAGCGGAAA+TGG - chr1_1:67833385-67833404 Msa0038370:CDS 50.0%
GCTACACTTCTTTGTGGTGG+TGG + chr1_1:67833735-67833754 None:intergenic 50.0%
! GGTGCTACACTTCTTTGTGG+TGG + chr1_1:67833738-67833757 None:intergenic 50.0%
TGTAGCACCAACACCAACAC+CGG - chr1_1:67833749-67833768 Msa0038370:intron 50.0%
!! ACTGATATTGGTGCTACCGC+CGG + chr1_1:67833771-67833790 None:intergenic 50.0%
GACTATTGTTGGGCCCAACT+TGG + chr1_1:67833838-67833857 None:intergenic 50.0%
! GGTGTTGCGGGACTATTGTT+GGG + chr1_1:67833848-67833867 None:intergenic 50.0%
!! TGGTGTTGCGGGACTATTGT+TGG + chr1_1:67833849-67833868 None:intergenic 50.0%
ACCAAAAGGTCCTCTATGGG+AGG - chr1_1:67834025-67834044 Msa0038370:intron 50.0%
! TCCTCCCATAGAGGACCTTT+TGG + chr1_1:67834029-67834048 None:intergenic 50.0%
TTATCTTCTCCCTGCTGAGG+TGG + chr1_1:67834329-67834348 None:intergenic 50.0%
GATAACATGGAGCAGAACCG+TGG - chr1_1:67834344-67834363 Msa0038370:intron 50.0%
GATAGGGATGAAAGTGGTGG+TGG - chr1_1:67834428-67834447 Msa0038370:intron 50.0%
!! TGGTGGTGGTGGTAACTTTG+AGG - chr1_1:67834448-67834467 Msa0038370:intron 50.0%
AGTGGCAAACAAACCTGCAG+TGG - chr1_1:67834472-67834491 Msa0038370:intron 50.0%
GTGGCAAACAAACCTGCAGT+GGG - chr1_1:67834473-67834492 Msa0038370:intron 50.0%
GAGAAGGAGCAGCTGCAAAA+AGG - chr1_1:67834528-67834547 Msa0038370:CDS 50.0%
AGATAGTGCAGGAGTTGTCG+AGG - chr1_1:67834595-67834614 Msa0038370:CDS 50.0%
GAGGAGGAGAGATTCTCTTG+TGG - chr1_1:67834651-67834670 Msa0038370:CDS 50.0%
GAGGGAAATTTGATGGGGGT+TGG - chr1_1:67834717-67834736 Msa0038370:CDS 50.0%
!! TTTGATGGGGGTTGGTTCGT+TGG - chr1_1:67834725-67834744 Msa0038370:CDS 50.0%
!!! GCTGTTTTAAGTGGTGGCGG+TGG - chr1_1:67831591-67831610 Msa0038370:three_prime_UTR 55.0%
TGCACCACCTAACATGACGG+CGG - chr1_1:67831638-67831657 Msa0038370:three_prime_UTR 55.0%
GATGGTGAACGTAGCTTCGG+TGG - chr1_1:67831726-67831745 Msa0038370:three_prime_UTR 55.0%
AAGTTTCTTGTCGCGGCCAC+CGG + chr1_1:67831755-67831774 None:intergenic 55.0%
GTGGCCGCGACAAGAAACTT+TGG - chr1_1:67831755-67831774 Msa0038370:three_prime_UTR 55.0%
AGAACCAAAGATGGCCGAGG+TGG - chr1_1:67832907-67832926 Msa0038370:CDS 55.0%
GGCCGAGGTGGAAAATCAGA+TGG - chr1_1:67832919-67832938 Msa0038370:CDS 55.0%
!! GGAAGAGGGTTGGTGGAAGT+AGG + chr1_1:67833276-67833295 None:intergenic 55.0%
GTCTTCGGAAGACGTCGAGT+AGG + chr1_1:67833349-67833368 None:intergenic 55.0%
GGTCATTGAGAAACGCGAGC+AGG - chr1_1:67833479-67833498 Msa0038370:CDS 55.0%
!! TGTGTTTGTTGTGGTGGCGG+TGG + chr1_1:67833690-67833709 None:intergenic 55.0%
GGCGGTAGCACCAATATCAG+TGG - chr1_1:67833770-67833789 Msa0038370:intron 55.0%
TGGGAGGGATGAGTTCGTCA+AGG - chr1_1:67833931-67833950 Msa0038370:intron 55.0%
GAGGGATGAGTTCGTCAAGG+TGG - chr1_1:67833934-67833953 Msa0038370:intron 55.0%
TGCTCCGGCTGAACCATCAA+CGG + chr1_1:67834296-67834315 None:intergenic 55.0%
!! AGGGATGAAAGTGGTGGTGG+TGG - chr1_1:67834431-67834450 Msa0038370:intron 55.0%
!! GATGAAAGTGGTGGTGGTGG+TGG - chr1_1:67834434-67834453 Msa0038370:intron 55.0%
GGTGGGGTCATAGATAGTGC+AGG - chr1_1:67834584-67834603 Msa0038370:CDS 55.0%
TAGTGCAGGAGTTGTCGAGG+AGG - chr1_1:67834598-67834617 Msa0038370:CDS 55.0%
!! GATGGTGGTGATGGTGGTTG+TGG - chr1_1:67834620-67834639 Msa0038370:CDS 55.0%
!! GGTGATGGTGGTTGTGGTTG+TGG - chr1_1:67834626-67834645 Msa0038370:CDS 55.0%
! GATGGTGGTTGTGGTTGTGG+TGG - chr1_1:67834629-67834648 Msa0038370:CDS 55.0%
CCTTCCGCCGTCATGTTAGG+TGG + chr1_1:67831645-67831664 None:intergenic 60.0%
CCACCTAACATGACGGCGGA+AGG - chr1_1:67831642-67831661 Msa0038370:three_prime_UTR 60.0%
CCACCTTCCGCCGTCATGTT+AGG + chr1_1:67831648-67831667 None:intergenic 60.0%
CCTAACATGACGGCGGAAGG+TGG - chr1_1:67831645-67831664 Msa0038370:three_prime_UTR 60.0%
AACATGACGGCGGAAGGTGG+TGG - chr1_1:67831648-67831667 Msa0038370:three_prime_UTR 60.0%
GTAGCTTCGGTGGTAACCGG+TGG - chr1_1:67831736-67831755 Msa0038370:three_prime_UTR 60.0%
CGTCGAGTAGGAGCTAGCCA+TGG + chr1_1:67833337-67833356 None:intergenic 60.0%
AGCACCAACACCAACACCGG+CGG - chr1_1:67833752-67833771 Msa0038370:intron 60.0%
!! ATTGGTGCTACCGCCGGTGT+TGG + chr1_1:67833765-67833784 None:intergenic 60.0%
TTGGGCCCAACTTGGTTGCC+GGG + chr1_1:67833830-67833849 None:intergenic 60.0%
GTTGGGCCCAACTTGGTTGC+CGG + chr1_1:67833831-67833850 None:intergenic 60.0%
!! TGGTGGAGCTGGTTCGAACC+AGG - chr1_1:67834244-67834263 Msa0038370:intron 60.0%
!! TGGAGCTGGTTCGAACCAGG+TGG - chr1_1:67834247-67834266 Msa0038370:intron 60.0%
!! GGCACCGTTGATGGTTCAGC+CGG - chr1_1:67834289-67834308 Msa0038370:intron 60.0%
TGGTTCAGCCGGAGCAGCAA+TGG - chr1_1:67834300-67834319 Msa0038370:intron 60.0%
TTCAGCCGGAGCAGCAATGG+CGG - chr1_1:67834303-67834322 Msa0038370:intron 60.0%
CATGGAGCAGAACCGTGGAC+AGG - chr1_1:67834349-67834368 Msa0038370:intron 60.0%
!! GAAAGTGGTGGTGGTGGTGG+TGG - chr1_1:67834437-67834456 Msa0038370:intron 60.0%
CAAGCTGATGCACCCACTGC+AGG + chr1_1:67834488-67834507 None:intergenic 60.0%
GCAGGAGTTGTCGAGGAGGA+TGG - chr1_1:67834602-67834621 Msa0038370:CDS 60.0%
GGAGTTGTCGAGGAGGATGG+TGG - chr1_1:67834605-67834624 Msa0038370:CDS 60.0%
! GTCGAGGAGGATGGTGGTGA+TGG - chr1_1:67834611-67834630 Msa0038370:CDS 60.0%
!! GAGGAGGATGGTGGTGATGG+TGG - chr1_1:67834614-67834633 Msa0038370:CDS 60.0%
GGTGGTTGTGGTTGTGGTGG+AGG - chr1_1:67834632-67834651 Msa0038370:CDS 60.0%
! GGTTGTGGTTGTGGTGGAGG+AGG - chr1_1:67834635-67834654 Msa0038370:CDS 60.0%
! ATGACGGCGGAAGGTGGTGG+TGG - chr1_1:67831651-67831670 Msa0038370:three_prime_UTR 65.0%
!! GGTGGTGGTGGTGGTGGAGT+TGG - chr1_1:67831663-67831682 Msa0038370:three_prime_UTR 65.0%
!! GCTACCGCCGGTGTTGGTGT+TGG + chr1_1:67833759-67833778 None:intergenic 65.0%
ACCACCCCCGGCAACCAAGT+TGG - chr1_1:67833821-67833840 Msa0038370:intron 65.0%
CCACCCCCGGCAACCAAGTT+GGG - chr1_1:67833822-67833841 Msa0038370:intron 65.0%
TGGGCCCAACTTGGTTGCCG+GGG + chr1_1:67833829-67833848 None:intergenic 65.0%
!! AACGGTGCCGCCATGCTCTC+GGG + chr1_1:67834278-67834297 None:intergenic 65.0%
!! CAACGGTGCCGCCATGCTCT+CGG + chr1_1:67834279-67834298 None:intergenic 65.0%
GAGCATGGCGGCACCGTTGA+TGG - chr1_1:67834280-67834299 Msa0038370:intron 65.0%
CAATGGCGGCCACCTCAGCA+GGG - chr1_1:67834317-67834336 Msa0038370:intron 65.0%
GGTGCAGCTGCTGCTGCTGC+TGG + chr1_1:67831624-67831643 None:intergenic 70.0%
!! ACGGCGGAAGGTGGTGGTGG+TGG - chr1_1:67831654-67831673 Msa0038370:three_prime_UTR 70.0%
!! GCGGAAGGTGGTGGTGGTGG+TGG - chr1_1:67831657-67831676 Msa0038370:three_prime_UTR 70.0%
ACCGCCAGCACAACCACCCC+CGG - chr1_1:67833809-67833828 Msa0038370:intron 70.0%
GTTGCCGGGGGTGGTTGTGC+TGG + chr1_1:67833816-67833835 None:intergenic 70.0%
CCCAACTTGGTTGCCGGGGG+TGG + chr1_1:67833825-67833844 None:intergenic 70.0%
GGGCCCAACTTGGTTGCCGG+GGG + chr1_1:67833828-67833847 None:intergenic 70.0%
TGCTCTCGGGCTGCACCACC+TGG + chr1_1:67834265-67834284 None:intergenic 70.0%
GGTGGTGCAGCCCGAGAGCA+TGG - chr1_1:67834265-67834284 Msa0038370:intron 70.0%
! GGTGCAGCCCGAGAGCATGG+CGG - chr1_1:67834268-67834287 Msa0038370:intron 70.0%
GGTGGCCGCCATTGCTGCTC+CGG + chr1_1:67834311-67834330 None:intergenic 70.0%
GCAATGGCGGCCACCTCAGC+AGG - chr1_1:67834316-67834335 Msa0038370:intron 70.0%
GCCGGGGGTGGTTGTGCTGG+CGG + chr1_1:67833813-67833832 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67831361 67834979 67831361 ID=Msa0038370;Name=Msa0038370
chr1_1 mRNA 67831361 67834979 67831361 ID=Msa0038370-mRNA-1;Parent=Msa0038370;Name=Msa0038370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=215|1|1|1|1|1|2|471|654
chr1_1 exon 67831361 67833512 67831361 ID=Msa0038370-mRNA-1:exon:22040;Parent=Msa0038370-mRNA-1
chr1_1 exon 67834481 67834979 67834481 ID=Msa0038370-mRNA-1:exon:22039;Parent=Msa0038370-mRNA-1
chr1_1 five_prime_UTR 67834765 67834979 67834765 ID=Msa0038370-mRNA-1:five_prime_utr;Parent=Msa0038370-mRNA-1
chr1_1 CDS 67834481 67834764 67834481 ID=Msa0038370-mRNA-1:cds;Parent=Msa0038370-mRNA-1
chr1_1 CDS 67831832 67833512 67831832 ID=Msa0038370-mRNA-1:cds;Parent=Msa0038370-mRNA-1
chr1_1 three_prime_UTR 67831361 67831831 67831361 ID=Msa0038370-mRNA-1:three_prime_utr;Parent=Msa0038370-mRNA-1
Gene Sequence

>Msa0038370

ATGCTAGGTGACTCAGCTGTTTTAAGTGGTGGCGGTGGAGATGCACCAGCAGCAGCAGCAGCTGCACCACCTAACATGACGGCGGAAGGTGGTGGTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAGGAAGAGTTGAAGATGGTGAACGTAGCTTCGGTGGTAACCGGTGGCCGCGACAAGAAACTTTGGCGCTTTTAAGCATACGATCGGATATGGATACAGTGTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTTCAAAGAAATGCAAAGAGAAGTTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGGCCGAGGTGGAAAATCAGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATACCAACCCTTCAACTCATCAACATCAACCTCAAAACATAGCAAAACCACCACAAATTTCGGCACCAACACCGTCACAAGTTGTTACAACTGCAACAGTTTCACTACCAATAACAGAAGCAACAATGTCACAAGTGGTTAACACCACTCTAAGTATCCCTCATGCAACTGTTCCATCAATTTCAGTGCCTCAAAACAATATTGCAACTACCCAACCAATTATCAATATGAATCCTACAATCCCATCCAATCCTTCAACTATTTTCCAACCATCAACAACAAACCCTACTTCCACCAACCCTCTTCCATCTTTTCCTAACATTTCTACAGATCTATTATCCAATTCCATGGCTAGCTCCTACTCGACGTCTTCCGAAGACACAACGGAAGAAGGATCTCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGAATAATGAAGAAAGTGACAGAGAAGCAAGAGGATTTGCAGAGGAGATTCTTGGAGGTCATTGAGAAACGCGAGCAGGAACGAGTTGTTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATGCTTGCACAAGAAAGATCTATAACTGCAGCAAAAGATGCTGCAGTCATGTCTTTCTTGCAAAAAATTGCGGAACAACAAAATCTAGGACAAGCATTGCATAACATCAACATTGCACAACCACCGCCACCACAACAAACACAACAACAACAACAACAACAACAACCACCACCACAAAGAAGTGTAGCACCAACACCAACACCGGCGGTAGCACCAATATCAGTGGTACAAGTTAACACAACACCGCCAGCACAACCACCCCCGGCAACCAAGTTGGGCCCAACAATAGTCCCGCAACACCAGCAACAACAATTGGTGACGAATATGGAAATTGTGAAAGTTGATAACAATGGTGAGACTTTCATGGGAGGGATGAGTTCGTCAAGGTGGCCGAAAGTTGAAGTTCAAGCACTGATAAATCTGAGGACGAGCATGGACAACAAGTACCAAGAGAATGGACCAAAAGGTCCTCTATGGGAGGAGATATCTTTAGCAATGAAGAACCTCGGTTACAATAGGAATGCAAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAAGAAAGTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGAAAGGGAGAAAATTCTAGTGGTGGAGCTGGTTCGAACCAGGTGGTGCAGCCCGAGAGCATGGCGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCGGCCACCTCAGCAGGGAGAAGATAACATGGAGCAGAACCGTGGACAGGAAGAAGAAGATATGGATGAAGATGATAAAGATGGTGAGGAAGAAGATGATGAAGAAGATAGGGATGAAAGTGGTGGTGGTGGTGGTGGTAACTTTGAGGTAGTGGCAAACAAACCTGCAGTGGGTGCATCAGCTTGA
Protein sequence

>Msa0038370

MLGDSAVLSGGGGDAPAAAAAAPPNMTAEGGGGGGVGSNSESDVERGRVEDGERSFGGNRWPRQETLALLSIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHTNPSTHQHQPQNIAKPPQISAPTPSQVVTTATVSLPITEATMSQVVNTTLSIPHATVPSISVPQNNIATTQPIINMNPTIPSNPSTIFQPSTTNPTSTNPLPSFPNISTDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERIMKKVTEKQEDLQRRFLEVIEKREQERVVREEAWRAQEMQRINREREMLAQERSITAAKDAAVMSFLQKIAEQQNLGQALHNINIAQPPPPQQTQQQQQQQQPPPQRSVAPTPTPAVAPISVVQVNTTPPAQPPPATKLGPTIVPQHQQQQLVTNMEIVKVDNNGETFMGGMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGENSSGGAGSNQVVQPESMAAPLMVQPEQQWRPPQQGEDNMEQNRGQEEEDMDEDDKDGEEEDDEEDRDESGGGGGGNFEVVANKPAVGASA*