Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039080 | AES62476.1 | 82.303 | 356 | 35 | 2 | 96 | 449 | 8 | 337 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039080 | Msa1310740 | 0.811281 | 7.571683e-51 | -8.615850e-47 |
| Msa0039080 | Msa1432200 | 0.800682 | 1.285076e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039080 | MtrunA17_Chr3g0093911 | 80.398 | 352 | 67 | 1 | 98 | 449 | 1 | 350 | 0.0 | 566 |
| Msa0039080 | MtrunA17_Chr7g0252101 | 59.910 | 444 | 153 | 6 | 9 | 449 | 11 | 432 | 2.04e-173 | 493 |
| Msa0039080 | MtrunA17_Chr1g0207351 | 69.688 | 353 | 100 | 3 | 102 | 449 | 16 | 366 | 1.88e-162 | 462 |
| Msa0039080 | MtrunA17_Chr4g0075971 | 55.556 | 450 | 165 | 11 | 13 | 449 | 175 | 602 | 1.01e-140 | 416 |
| Msa0039080 | MtrunA17_Chr3g0077801 | 57.955 | 352 | 136 | 6 | 101 | 446 | 4 | 349 | 4.91e-129 | 377 |
| Msa0039080 | MtrunA17_Chr6g0488101 | 48.614 | 469 | 187 | 16 | 12 | 449 | 10 | 455 | 2.17e-124 | 369 |
| Msa0039080 | MtrunA17_Chr6g0488271 | 51.196 | 418 | 157 | 13 | 62 | 449 | 15 | 415 | 6.61e-122 | 361 |
| Msa0039080 | MtrunA17_Chr3g0077901 | 53.444 | 363 | 153 | 7 | 94 | 448 | 17 | 371 | 1.40e-117 | 348 |
| Msa0039080 | MtrunA17_Chr1g0209051 | 67.159 | 271 | 85 | 3 | 181 | 448 | 1 | 270 | 8.11e-116 | 340 |
| Msa0039080 | MtrunA17_Chr3g0077851 | 54.227 | 343 | 141 | 7 | 114 | 448 | 1 | 335 | 2.92e-112 | 333 |
| Msa0039080 | MtrunA17_Chr1g0202841 | 87.151 | 179 | 21 | 1 | 273 | 449 | 1 | 179 | 1.64e-109 | 320 |
| Msa0039080 | MtrunA17_Chr7g0243331 | 54.986 | 351 | 142 | 9 | 106 | 449 | 9 | 350 | 5.71e-108 | 323 |
| Msa0039080 | MtrunA17_Chr3g0112311 | 52.055 | 365 | 150 | 10 | 98 | 447 | 1 | 355 | 4.89e-103 | 311 |
| Msa0039080 | MtrunA17_Chr3g0122991 | 46.386 | 332 | 103 | 8 | 100 | 415 | 2 | 274 | 2.63e-80 | 249 |
| Msa0039080 | MtrunA17_Chr6g0452641 | 49.231 | 325 | 125 | 10 | 148 | 449 | 33 | 340 | 4.70e-77 | 243 |
| Msa0039080 | MtrunA17_Chr3g0123471 | 51.154 | 260 | 111 | 8 | 189 | 441 | 9 | 259 | 2.58e-64 | 207 |
| Msa0039080 | MtrunA17_Chr7g0243391 | 51.613 | 217 | 97 | 5 | 94 | 307 | 14 | 225 | 2.13e-53 | 179 |
| Msa0039080 | MtrunA17_Chr4g0075861 | 53.023 | 215 | 79 | 6 | 13 | 221 | 175 | 373 | 4.23e-51 | 177 |
| Msa0039080 | MtrunA17_Chr1g0196231 | 59.538 | 173 | 48 | 7 | 72 | 242 | 214 | 366 | 1.71e-47 | 167 |
| Msa0039080 | MtrunA17_Chr1g0206951 | 69.565 | 115 | 33 | 1 | 101 | 215 | 2 | 114 | 4.14e-46 | 155 |
| Msa0039080 | MtrunA17_Chr1g0187941 | 58.394 | 137 | 57 | 0 | 273 | 409 | 1 | 137 | 4.44e-43 | 148 |
| Msa0039080 | MtrunA17_Chr6g0486591 | 45.399 | 163 | 72 | 5 | 300 | 449 | 1 | 159 | 1.03e-33 | 124 |
| Msa0039080 | MtrunA17_Chr1g0196241 | 68.132 | 91 | 25 | 2 | 344 | 433 | 1 | 88 | 2.39e-31 | 115 |
| Msa0039080 | MtrunA17_Chr1g0209191 | 60.396 | 101 | 30 | 2 | 355 | 448 | 1 | 98 | 4.77e-31 | 115 |
| Msa0039080 | MtrunA17_Chr1g0209061 | 49.206 | 126 | 34 | 4 | 12 | 137 | 12 | 107 | 2.71e-26 | 102 |
| Msa0039080 | MtrunA17_Chr6g0459061 | 27.778 | 360 | 217 | 13 | 106 | 445 | 18 | 354 | 2.79e-24 | 103 |
| Msa0039080 | MtrunA17_Chr7g0238781 | 43.066 | 137 | 70 | 6 | 130 | 263 | 27 | 158 | 5.61e-21 | 89.4 |
| Msa0039080 | MtrunA17_Chr1g0209201 | 47.826 | 92 | 31 | 4 | 1 | 89 | 5 | 82 | 1.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039080 | AT3G01320.1 | 34.559 | 136 | 61 | 3 | 11 | 146 | 58 | 165 | 3.46e-11 | 66.2 |
| Msa0039080 | AT3G01320.2 | 34.559 | 136 | 61 | 3 | 11 | 146 | 58 | 165 | 3.77e-11 | 66.2 |
Find 76 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATGTCAATTTAATTT+TGG | 0.091468 | 1_1:+68590568 | Msa0039080:CDS |
| ACAATATGTAGTGTGTATTC+AGG | 0.251705 | 1_1:+68593590 | Msa0039080:CDS |
| GTCATCAAAATCTAGAGTTT+TGG | 0.296471 | 1_1:-68592730 | None:intergenic |
| CGTCACAATTAACCAACTTT+AGG | 0.304358 | 1_1:-68593355 | None:intergenic |
| AGAGTGAAGGGGCTGCTTAA+AGG | 0.319902 | 1_1:+68590548 | Msa0039080:CDS |
| TTCCAGCCTGGAGAAGCTTT+AGG | 0.329296 | 1_1:-68590463 | None:intergenic |
| CACTCATATCCCCATCTATT+CGG | 0.337148 | 1_1:-68593536 | None:intergenic |
| GATGACCACTTTCAATTTGC+CGG | 0.339326 | 1_1:+68592747 | Msa0039080:CDS |
| AAGTTGCATTTAACTATAAC+AGG | 0.343606 | 1_1:+68590414 | Msa0039080:CDS |
| TACTTCAGATTGGAAACTTT+GGG | 0.344539 | 1_1:+68593452 | Msa0039080:CDS |
| ATCAATCTCGAAATTATGAT+TGG | 0.349612 | 1_1:+68593162 | Msa0039080:CDS |
| TGAATTTCCCATTGTTGAAC+AGG | 0.354055 | 1_1:-68593189 | None:intergenic |
| CATTGAGCAATCCGAATAGA+TGG | 0.371315 | 1_1:+68593525 | Msa0039080:CDS |
| ATGCATAATCGCGGACGCTT+GGG | 0.379695 | 1_1:-68590370 | None:intergenic |
| TCTCCAGGTGATAAACTCTT+TGG | 0.380152 | 1_1:-68592902 | None:intergenic |
| AACTATGAATTACTTCAGAT+TGG | 0.381070 | 1_1:+68593442 | Msa0039080:CDS |
| ATCAAACACATTGGTGCATC+AGG | 0.393177 | 1_1:-68593653 | None:intergenic |
| AGAGAACCGTGAACTTCCTT+TGG | 0.394473 | 1_1:+68592689 | Msa0039080:CDS |
| TTACTTCAGATTGGAAACTT+TGG | 0.404942 | 1_1:+68593451 | Msa0039080:CDS |
| AATGCATAATCGCGGACGCT+TGG | 0.415451 | 1_1:-68590371 | None:intergenic |
| GAGTGAAGGGGCTGCTTAAA+GGG | 0.420256 | 1_1:+68590549 | Msa0039080:CDS |
| GTTGTGATATACAGGGAAAA+AGG | 0.431784 | 1_1:+68592653 | Msa0039080:intron |
| TTGCCGGTGTGTGCAAGAAT+TGG | 0.432034 | 1_1:+68592763 | Msa0039080:CDS |
| CTCCTAAAGCTTCTCCAGGC+TGG | 0.439589 | 1_1:+68590461 | Msa0039080:CDS |
| GTACACATTACTTATTTCGT+TGG | 0.455167 | 1_1:-68593405 | None:intergenic |
| TGGGTTACCTGTTCAACAAT+GGG | 0.467987 | 1_1:+68593182 | Msa0039080:CDS |
| AGAGACGGTTGTTGACTTTG+TGG | 0.468261 | 1_1:+68593211 | Msa0039080:CDS |
| AGTGTGATTTGATGTTCCTT+TGG | 0.472772 | 1_1:-68590608 | None:intergenic |
| AATTAACCAACTTTAGGTAC+GGG | 0.478189 | 1_1:-68593349 | None:intergenic |
| CACATTGGTGCATCAGGAGC+TGG | 0.485059 | 1_1:-68593647 | None:intergenic |
| TCAATCTCGAAATTATGATT+GGG | 0.488841 | 1_1:+68593163 | Msa0039080:CDS |
| TGATTTGATGTTCCTTTGGC+AGG | 0.495215 | 1_1:-68590604 | None:intergenic |
| ATTTGAAGTTGAAGAAGTAA+TGG | 0.498732 | 1_1:-68592834 | None:intergenic |
| CAATTAACCAACTTTAGGTA+CGG | 0.499252 | 1_1:-68593350 | None:intergenic |
| TACCCCTATGTTGGCCATGT+TGG | 0.499435 | 1_1:-68593261 | None:intergenic |
| CAATGTGTTTGATGCTCGAT+TGG | 0.501706 | 1_1:+68593663 | Msa0039080:CDS |
| TATAATCTCTTCTTCCAGCC+TGG | 0.504402 | 1_1:-68590475 | None:intergenic |
| CAATATGTAGTGTGTATTCA+GGG | 0.505251 | 1_1:+68593591 | Msa0039080:CDS |
| TTGGTCGGGTATGCTAATAA+AGG | 0.506354 | 1_1:-68592883 | None:intergenic |
| AGGTGATAAACTCTTTGGTC+GGG | 0.516942 | 1_1:-68592897 | None:intergenic |
| TCACCAACATGGCCAACATA+GGG | 0.519186 | 1_1:+68593258 | Msa0039080:CDS |
| TTTATCAAAGCAAGAGTGAA+GGG | 0.523488 | 1_1:+68590536 | Msa0039080:CDS |
| CCGGTGTGTGCAAGAATTGG+AGG | 0.534247 | 1_1:+68592766 | Msa0039080:CDS |
| TTGATGTTCCTTTGGCAGGA+AGG | 0.539967 | 1_1:-68590600 | None:intergenic |
| AAAACTCCTAAAGCTTCTCC+AGG | 0.545656 | 1_1:+68590457 | Msa0039080:CDS |
| CAGGTGATAAACTCTTTGGT+CGG | 0.557246 | 1_1:-68592898 | None:intergenic |
| TTGGGTTACCTGTTCAACAA+TGG | 0.557380 | 1_1:+68593181 | Msa0039080:CDS |
| GCACATCCAAAGGAAGTTCA+CGG | 0.562215 | 1_1:-68592695 | None:intergenic |
| GTCACCAACATGGCCAACAT+AGG | 0.563679 | 1_1:+68593257 | Msa0039080:CDS |
| AAGCGTCCGCGATTATGCAT+TGG | 0.566994 | 1_1:+68590373 | Msa0039080:CDS |
| TGTCAAAAGCAAACAAAGCA+CGG | 0.569036 | 1_1:-68593085 | None:intergenic |
| GGAAGTACTTCATCATCTCC+AGG | 0.569995 | 1_1:-68592917 | None:intergenic |
| CAAGCTGAGTACCCCTATGT+TGG | 0.571012 | 1_1:-68593270 | None:intergenic |
| AACAACAAAGACAAATTCCT+CGG | 0.572192 | 1_1:-68593114 | None:intergenic |
| CAAATCACACTCCACACCAC+TGG | 0.572542 | 1_1:+68590620 | Msa0039080:CDS |
| ATTGAGCAATCCGAATAGAT+GGG | 0.573573 | 1_1:+68593526 | Msa0039080:CDS |
| TGCATAATCGCGGACGCTTG+GGG | 0.573760 | 1_1:-68590369 | None:intergenic |
| CACGTAACATAAGTAGATGA+GGG | 0.576827 | 1_1:-68592939 | None:intergenic |
| ATTCAACGCCTTCCTGCCAA+AGG | 0.604427 | 1_1:+68590592 | Msa0039080:CDS |
| ATGATATCAAGCACATCCAA+AGG | 0.608076 | 1_1:-68592705 | None:intergenic |
| ACACGTAACATAAGTAGATG+AGG | 0.610747 | 1_1:-68592940 | None:intergenic |
| ACACACCGGCAAATTGAAAG+TGG | 0.611570 | 1_1:-68592752 | None:intergenic |
| TTAGTAACTAACCAGTGGTG+TGG | 0.622803 | 1_1:-68590631 | None:intergenic |
| CGGTGTGTGCAAGAATTGGA+GGG | 0.623193 | 1_1:+68592767 | Msa0039080:CDS |
| CGACCAAAGAGTTTATCACC+TGG | 0.623923 | 1_1:+68592899 | Msa0039080:CDS |
| AACAATGGGAAATTCAGAGA+CGG | 0.625552 | 1_1:+68593196 | Msa0039080:CDS |
| TTATCAAAGCAAGAGTGAAG+GGG | 0.627527 | 1_1:+68590537 | Msa0039080:CDS |
| ACTTATGTTACGTGTTCTAG+CGG | 0.645718 | 1_1:+68592948 | Msa0039080:CDS |
| CCTCCAATTCTTGCACACAC+CGG | 0.651110 | 1_1:-68592766 | None:intergenic |
| CACCAACATGGCCAACATAG+GGG | 0.652462 | 1_1:+68593259 | Msa0039080:CDS |
| CAATCGAGCATCAAACACAT+TGG | 0.652484 | 1_1:-68593662 | None:intergenic |
| AATATATGTTGTCACCAACA+TGG | 0.656783 | 1_1:+68593247 | Msa0039080:CDS |
| TTGAGCAATCCGAATAGATG+GGG | 0.667711 | 1_1:+68593527 | Msa0039080:CDS |
| ATTAACCAACTTTAGGTACG+GGG | 0.670149 | 1_1:-68593348 | None:intergenic |
| ACGTAACATAAGTAGATGAG+GGG | 0.683717 | 1_1:-68592938 | None:intergenic |
| AATACGCCAATGCATAATCG+CGG | 0.713695 | 1_1:-68590379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTGTATTTTATTGT+TGG | + | chr1_1:68592098-68592117 | Msa0039080:intron | 10.0% |
| !! | CTAAAAAAAAATAAAATTAC+AGG | - | chr1_1:68592255-68592274 | None:intergenic | 10.0% |
| !!! | TTATAATTTGAAGATTTTTT+TGG | + | chr1_1:68592284-68592303 | Msa0039080:intron | 10.0% |
| !!! | TTTTTTATTTTATTTTACAG+GGG | + | chr1_1:68592500-68592519 | Msa0039080:intron | 10.0% |
| !! | CTTTGATAAAATTTAAAAAG+TGG | - | chr1_1:68590526-68590545 | None:intergenic | 15.0% |
| !! | TACAAAACAAAGAAATATTA+TGG | + | chr1_1:68591220-68591239 | Msa0039080:intron | 15.0% |
| !! | ACAAAACAAAGAAATATTAT+GGG | + | chr1_1:68591221-68591240 | Msa0039080:intron | 15.0% |
| !!! | TAAATATAGTTTAACTTTTG+CGG | - | chr1_1:68591518-68591537 | None:intergenic | 15.0% |
| !! | AAAAAAAATAAAATTACAGG+AGG | - | chr1_1:68592252-68592271 | None:intergenic | 15.0% |
| !! | AAATCTTCAAATTATAAAGA+TGG | - | chr1_1:68592281-68592300 | None:intergenic | 15.0% |
| !!! | AATTTGAAAATTTCTAGTTT+TGG | - | chr1_1:68592463-68592482 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTATTTTACAGG+GGG | + | chr1_1:68592501-68592520 | Msa0039080:intron | 15.0% |
| !!! | GATATTTTATTGTTTATCTA+GGG | - | chr1_1:68592571-68592590 | None:intergenic | 15.0% |
| !!! | TGATATTTTATTGTTTATCT+AGG | - | chr1_1:68592572-68592591 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTGTAAGGTTTC+TGG | - | chr1_1:68590897-68590916 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTTTAAATTTGTA+AGG | - | chr1_1:68590904-68590923 | None:intergenic | 20.0% |
| !!! | TTTTTCATGATTTCTTCTTT+TGG | - | chr1_1:68590928-68590947 | None:intergenic | 20.0% |
| !! | AGATTGATAAATAGCATAAT+AGG | - | chr1_1:68590984-68591003 | None:intergenic | 20.0% |
| !!! | TATGATTTTGTCATTGTATT+TGG | + | chr1_1:68591492-68591511 | Msa0039080:intron | 20.0% |
| !!! | TAGTATCTTTTATTGATTCT+TGG | + | chr1_1:68591909-68591928 | Msa0039080:intron | 20.0% |
| !! | CATGATACTATTAGATAAAT+GGG | + | chr1_1:68592179-68592198 | Msa0039080:intron | 20.0% |
| !! | TAATATAGGTCATTTCATTT+CGG | + | chr1_1:68592222-68592241 | Msa0039080:intron | 20.0% |
| !!! | TTTGAAGATTTTTTTGGATT+TGG | + | chr1_1:68592290-68592309 | Msa0039080:intron | 20.0% |
| !!! | CTAGAAATTTTCAAATTACA+AGG | + | chr1_1:68592466-68592485 | Msa0039080:intron | 20.0% |
| !!! | AATTTATTGGAGAACTTTTT+TGG | + | chr1_1:68592800-68592819 | Msa0039080:CDS | 20.0% |
| !!! | CCTTTTTTATTCTTGTAAAT+GGG | - | chr1_1:68593022-68593041 | None:intergenic | 20.0% |
| !!! | ACCTTTTTTATTCTTGTAAA+TGG | - | chr1_1:68593023-68593042 | None:intergenic | 20.0% |
| !!! | TAAAAAAATAGAGTTTTCTG+AGG | - | chr1_1:68593060-68593079 | None:intergenic | 20.0% |
| !!! | CAGTTTTAGAAATTTAACAT+TGG | - | chr1_1:68593303-68593322 | None:intergenic | 20.0% |
| ! | AAGTTGCATTTAACTATAAC+AGG | + | chr1_1:68590414-68590433 | Msa0039080:CDS | 25.0% |
| ! | ATAAATTAGTAACTAACCAG+TGG | - | chr1_1:68590639-68590658 | None:intergenic | 25.0% |
| ! | GATAAATAGCATAATAGGAT+GGG | - | chr1_1:68590979-68590998 | None:intergenic | 25.0% |
| ! | TGATAAATAGCATAATAGGA+TGG | - | chr1_1:68590980-68590999 | None:intergenic | 25.0% |
| !! | ACAACAATAAGCTTTGATAT+TGG | - | chr1_1:68591074-68591093 | None:intergenic | 25.0% |
| ! | TACTAAATGTCTTCAACTAT+TGG | + | chr1_1:68591631-68591650 | Msa0039080:intron | 25.0% |
| ! | ATAGTATCCAATACAATGAA+GGG | + | chr1_1:68591683-68591702 | Msa0039080:intron | 25.0% |
| ! | TAAAACCTTTATCACTTTGT+AGG | + | chr1_1:68591749-68591768 | Msa0039080:intron | 25.0% |
| ! | AATAACCTACAAAGTGATAA+AGG | - | chr1_1:68591757-68591776 | None:intergenic | 25.0% |
| !! | TTTGTCTTTGATAGCATATA+TGG | + | chr1_1:68591781-68591800 | Msa0039080:intron | 25.0% |
| ! | GTGGAATTATTGAATTTGAA+GGG | - | chr1_1:68591827-68591846 | None:intergenic | 25.0% |
| ! | AGTGGAATTATTGAATTTGA+AGG | - | chr1_1:68591828-68591847 | None:intergenic | 25.0% |
| ! | TATGAAGAAAAACAATAGAG+TGG | - | chr1_1:68591846-68591865 | None:intergenic | 25.0% |
| ! | CAACAAAAAGAAAAACGAAA+AGG | - | chr1_1:68591991-68592010 | None:intergenic | 25.0% |
| !! | TTTTCTTTTTGTTGAGTAGT+AGG | + | chr1_1:68591997-68592016 | Msa0039080:intron | 25.0% |
| !! | TTTCTTTTTGTTGAGTAGTA+GGG | + | chr1_1:68591998-68592017 | Msa0039080:intron | 25.0% |
| !! | TTTGTATTTTATTGTTGGTC+TGG | + | chr1_1:68592103-68592122 | Msa0039080:intron | 25.0% |
| ! | CCATTTATCTAATAGTATCA+TGG | - | chr1_1:68592181-68592200 | None:intergenic | 25.0% |
| ! | CCATGATACTATTAGATAAA+TGG | + | chr1_1:68592178-68592197 | Msa0039080:intron | 25.0% |
| ! | ATGAAATGACCTATATTACA+GGG | - | chr1_1:68592220-68592239 | None:intergenic | 25.0% |
| ! | AATGAAATGACCTATATTAC+AGG | - | chr1_1:68592221-68592240 | None:intergenic | 25.0% |
| !! | TGAAATTTGCTCAATTTACA+GGG | - | chr1_1:68592388-68592407 | None:intergenic | 25.0% |
| ! | TATCATTGTTGTGATATACA+GGG | + | chr1_1:68592646-68592665 | Msa0039080:intron | 25.0% |
| !! | GGGCTTTTCATAAAATTTAT+TGG | + | chr1_1:68592787-68592806 | Msa0039080:CDS | 25.0% |
| !! | ATTTGAAGTTGAAGAAGTAA+TGG | - | chr1_1:68592837-68592856 | None:intergenic | 25.0% |
| ! | CCCATTTACAAGAATAAAAA+AGG | + | chr1_1:68593019-68593038 | Msa0039080:CDS | 25.0% |
| ! | ATCAATCTCGAAATTATGAT+TGG | + | chr1_1:68593162-68593181 | Msa0039080:CDS | 25.0% |
| ! | TCAATCTCGAAATTATGATT+GGG | + | chr1_1:68593163-68593182 | Msa0039080:CDS | 25.0% |
| ! | AACTATGAATTACTTCAGAT+TGG | + | chr1_1:68593442-68593461 | Msa0039080:CDS | 25.0% |
| !! | TTATGCATTGGCGTATTTTA+AGG | + | chr1_1:68590385-68590404 | Msa0039080:CDS | 30.0% |
| TATACACATCCCAAAAAGTA+TGG | + | chr1_1:68590500-68590519 | Msa0039080:CDS | 30.0% | |
| !! | AAAAAGTGGCCATACTTTTT+GGG | - | chr1_1:68590512-68590531 | None:intergenic | 30.0% |
| ! | TAAAAAGTGGCCATACTTTT+TGG | - | chr1_1:68590513-68590532 | None:intergenic | 30.0% |
| ! | TTTTATCAAAGCAAGAGTGA+AGG | + | chr1_1:68590535-68590554 | Msa0039080:CDS | 30.0% |
| TTTATCAAAGCAAGAGTGAA+GGG | + | chr1_1:68590536-68590555 | Msa0039080:CDS | 30.0% | |
| !! | AGGGCATGTCAATTTAATTT+TGG | + | chr1_1:68590568-68590587 | Msa0039080:CDS | 30.0% |
| !! | GGGCATGTCAATTTAATTTT+GGG | + | chr1_1:68590569-68590588 | Msa0039080:CDS | 30.0% |
| ! | ATTTTCTGGATTCAGTGTAT+TGG | + | chr1_1:68590750-68590769 | Msa0039080:intron | 30.0% |
| !!! | AAGGTTTCTGGAATATTTTC+TGG | - | chr1_1:68590885-68590904 | None:intergenic | 30.0% |
| TTCTTGAAAGAGATAGCAAA+GGG | - | chr1_1:68591013-68591032 | None:intergenic | 30.0% | |
| ATTCTTGAAAGAGATAGCAA+AGG | - | chr1_1:68591014-68591033 | None:intergenic | 30.0% | |
| ! | ATTGGTGAATGATTGATGAT+AGG | - | chr1_1:68591056-68591075 | None:intergenic | 30.0% |
| !!! | AACCTTTTAGTTCTAGATGA+TGG | - | chr1_1:68591169-68591188 | None:intergenic | 30.0% |
| ! | TGAAGCCAAGGATTTTAAAT+TGG | + | chr1_1:68591193-68591212 | Msa0039080:intron | 30.0% |
| ! | GAAGCCAAGGATTTTAAATT+GGG | + | chr1_1:68591194-68591213 | Msa0039080:intron | 30.0% |
| ! | AAGCCAAGGATTTTAAATTG+GGG | + | chr1_1:68591195-68591214 | Msa0039080:intron | 30.0% |
| !!! | GCTGACTTATTTTGAAACTT+TGG | + | chr1_1:68591269-68591288 | Msa0039080:intron | 30.0% |
| ATTATATCACCATAGATGCT+CGG | - | chr1_1:68591351-68591370 | None:intergenic | 30.0% | |
| AGCATCTATGGTGATATAAT+TGG | + | chr1_1:68591351-68591370 | Msa0039080:intron | 30.0% | |
| GCATCTATGGTGATATAATT+GGG | + | chr1_1:68591352-68591371 | Msa0039080:intron | 30.0% | |
| CATCTATGGTGATATAATTG+GGG | + | chr1_1:68591353-68591372 | Msa0039080:intron | 30.0% | |
| !!! | ACTCTATTTTTTGTCTGAGT+TGG | + | chr1_1:68591445-68591464 | Msa0039080:intron | 30.0% |
| !!! | CTCTATTTTTTGTCTGAGTT+GGG | + | chr1_1:68591446-68591465 | Msa0039080:intron | 30.0% |
| ! | TTGTTGTTGATTGTTTGTGA+TGG | + | chr1_1:68591554-68591573 | Msa0039080:intron | 30.0% |
| GATAGTATCCAATACAATGA+AGG | + | chr1_1:68591682-68591701 | Msa0039080:intron | 30.0% | |
| GGAATTAAAGACATAGGAAA+AGG | - | chr1_1:68591970-68591989 | None:intergenic | 30.0% | |
| CGAAAAGGAATTAAAGACAT+AGG | - | chr1_1:68591976-68591995 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGTTGAGTAGTAG+GGG | + | chr1_1:68591999-68592018 | Msa0039080:intron | 30.0% |
| GGGAAAATAAATTACTAACG+TGG | + | chr1_1:68592061-68592080 | Msa0039080:intron | 30.0% | |
| AATTACTAACGTGGAGAAAA+AGG | + | chr1_1:68592070-68592089 | Msa0039080:intron | 30.0% | |
| TAATAGTATCATGGAACATG+AGG | - | chr1_1:68592172-68592191 | None:intergenic | 30.0% | |
| TGAAATGACCTATATTACAG+GGG | - | chr1_1:68592219-68592238 | None:intergenic | 30.0% | |
| ! | TTTTTGGATTTGGACTTTCA+TGG | + | chr1_1:68592300-68592319 | Msa0039080:intron | 30.0% |
| ! | AAATTTGCTCAAATTACAGG+GGG | - | chr1_1:68592356-68592375 | None:intergenic | 30.0% |
| ! | GAAATTTGCTCAAATTACAG+GGG | - | chr1_1:68592357-68592376 | None:intergenic | 30.0% |
| ! | CGAAATTTGCTCAAATTACA+GGG | - | chr1_1:68592358-68592377 | None:intergenic | 30.0% |
| CCTGTAATTTGAGCAAATTT+CGG | + | chr1_1:68592356-68592375 | Msa0039080:intron | 30.0% | |
| ! | AAATTTGCTCAATTTACAGG+GGG | - | chr1_1:68592386-68592405 | None:intergenic | 30.0% |
| ! | GAAATTTGCTCAATTTACAG+GGG | - | chr1_1:68592387-68592406 | None:intergenic | 30.0% |
| ! | CTGAAATTTGCTCAATTTAC+AGG | - | chr1_1:68592389-68592408 | None:intergenic | 30.0% |
| TGTACAGTCAAAATTCATGA+AGG | + | chr1_1:68592436-68592455 | Msa0039080:intron | 30.0% | |
| ! | TGTTTTACCCCATGTAATAT+AGG | - | chr1_1:68592541-68592560 | None:intergenic | 30.0% |
| ! | ATCACAACAATGATAGTGTT+AGG | - | chr1_1:68592641-68592660 | None:intergenic | 30.0% |
| CTATCATTGTTGTGATATAC+AGG | + | chr1_1:68592645-68592664 | Msa0039080:intron | 30.0% | |
| !! | GTCATCAAAATCTAGAGTTT+TGG | - | chr1_1:68592733-68592752 | None:intergenic | 30.0% |
| AACAACAAAGACAAATTCCT+CGG | - | chr1_1:68593117-68593136 | None:intergenic | 30.0% | |
| AATATATGTTGTCACCAACA+TGG | + | chr1_1:68593247-68593266 | Msa0039080:CDS | 30.0% | |
| AATTAACCAACTTTAGGTAC+GGG | - | chr1_1:68593352-68593371 | None:intergenic | 30.0% | |
| CAATTAACCAACTTTAGGTA+CGG | - | chr1_1:68593353-68593372 | None:intergenic | 30.0% | |
| GTACACATTACTTATTTCGT+TGG | - | chr1_1:68593408-68593427 | None:intergenic | 30.0% | |
| TTACTTCAGATTGGAAACTT+TGG | + | chr1_1:68593451-68593470 | Msa0039080:CDS | 30.0% | |
| TACTTCAGATTGGAAACTTT+GGG | + | chr1_1:68593452-68593471 | Msa0039080:CDS | 30.0% | |
| ACAATATGTAGTGTGTATTC+AGG | + | chr1_1:68593590-68593609 | Msa0039080:CDS | 30.0% | |
| CAATATGTAGTGTGTATTCA+GGG | + | chr1_1:68593591-68593610 | Msa0039080:CDS | 30.0% | |
| TTATCAAAGCAAGAGTGAAG+GGG | + | chr1_1:68590537-68590556 | Msa0039080:CDS | 35.0% | |
| AGTGTGATTTGATGTTCCTT+TGG | - | chr1_1:68590611-68590630 | None:intergenic | 35.0% | |
| TACAGCATATGGTAGAAACA+TGG | - | chr1_1:68590705-68590724 | None:intergenic | 35.0% | |
| AATCATGGCATTACAGCATA+TGG | - | chr1_1:68590716-68590735 | None:intergenic | 35.0% | |
| TGACGACAAACGAAAAATCA+TGG | - | chr1_1:68590731-68590750 | None:intergenic | 35.0% | |
| !! | TTTCGTTTGTCGTCATTTTC+TGG | + | chr1_1:68590736-68590755 | Msa0039080:intron | 35.0% |
| ACTTGTGAGATGAGAACAAA+TGG | - | chr1_1:68591120-68591139 | None:intergenic | 35.0% | |
| ! | TGCCATCATCTAGAACTAAA+AGG | + | chr1_1:68591164-68591183 | Msa0039080:intron | 35.0% |
| AAAAGGTTTATGTGAAGCCA+AGG | + | chr1_1:68591181-68591200 | Msa0039080:intron | 35.0% | |
| ! | AGCCAAGGATTTTAAATTGG+GGG | + | chr1_1:68591196-68591215 | Msa0039080:intron | 35.0% |
| GTTTCAAAATAAGTCAGCCA+AGG | - | chr1_1:68591267-68591286 | None:intergenic | 35.0% | |
| ! | ATTTTACGCGACCATTAGAA+AGG | + | chr1_1:68591308-68591327 | Msa0039080:intron | 35.0% |
| ! | TTTTACGCGACCATTAGAAA+GGG | + | chr1_1:68591309-68591328 | Msa0039080:intron | 35.0% |
| TTAGTATCCACCCTTTCTAA+TGG | - | chr1_1:68591322-68591341 | None:intergenic | 35.0% | |
| TTATATCACCATAGATGCTC+GGG | - | chr1_1:68591350-68591369 | None:intergenic | 35.0% | |
| ! | ATAAGTCAAGATGATGGCAA+GGG | - | chr1_1:68591396-68591415 | None:intergenic | 35.0% |
| ACCAACATAAGTCAAGATGA+TGG | - | chr1_1:68591402-68591421 | None:intergenic | 35.0% | |
| TCAAATAGCTTCAAAAGCTC+TGG | - | chr1_1:68591664-68591683 | None:intergenic | 35.0% | |
| GAGAATACCCTTCATTGTAT+TGG | - | chr1_1:68591693-68591712 | None:intergenic | 35.0% | |
| ATCATGGCAATGTATAGTGT+AGG | - | chr1_1:68592025-68592044 | None:intergenic | 35.0% | |
| ! | ATTTTCGTGATCATGGATCA+TGG | - | chr1_1:68592041-68592060 | None:intergenic | 35.0% |
| ATGATCCATGATCACGAAAA+TGG | + | chr1_1:68592040-68592059 | Msa0039080:intron | 35.0% | |
| TGATCCATGATCACGAAAAT+GGG | + | chr1_1:68592041-68592060 | Msa0039080:intron | 35.0% | |
| ! | TTTTCCCATTTTCGTGATCA+TGG | - | chr1_1:68592048-68592067 | None:intergenic | 35.0% |
| !! | TGTTGGTCTGGATTTTTGTT+TGG | + | chr1_1:68592115-68592134 | Msa0039080:intron | 35.0% |
| !! | GTTGGTCTGGATTTTTGTTT+GGG | + | chr1_1:68592116-68592135 | Msa0039080:intron | 35.0% |
| !! | TTGGTCTGGATTTTTGTTTG+GGG | + | chr1_1:68592117-68592136 | Msa0039080:intron | 35.0% |
| ! | CCGAAATTTGCTCAAATTAC+AGG | - | chr1_1:68592359-68592378 | None:intergenic | 35.0% |
| ACAAAATCGATGACATGTGA+GGG | - | chr1_1:68592419-68592438 | None:intergenic | 35.0% | |
| TACAAAATCGATGACATGTG+AGG | - | chr1_1:68592420-68592439 | None:intergenic | 35.0% | |
| !! | TTATTTTACAGGGGGTAAAC+CGG | + | chr1_1:68592509-68592528 | Msa0039080:intron | 35.0% |
| CATGTAATATAGGCCATTTC+CGG | - | chr1_1:68592531-68592550 | None:intergenic | 35.0% | |
| GGAAATGGCCTATATTACAT+GGG | + | chr1_1:68592530-68592549 | Msa0039080:intron | 35.0% | |
| GAAATGGCCTATATTACATG+GGG | + | chr1_1:68592531-68592550 | Msa0039080:intron | 35.0% | |
| GTTGTGATATACAGGGAAAA+AGG | + | chr1_1:68592653-68592672 | Msa0039080:intron | 35.0% | |
| ATGATATCAAGCACATCCAA+AGG | - | chr1_1:68592708-68592727 | None:intergenic | 35.0% | |
| ACGTAACATAAGTAGATGAG+GGG | - | chr1_1:68592941-68592960 | None:intergenic | 35.0% | |
| CACGTAACATAAGTAGATGA+GGG | - | chr1_1:68592942-68592961 | None:intergenic | 35.0% | |
| ACACGTAACATAAGTAGATG+AGG | - | chr1_1:68592943-68592962 | None:intergenic | 35.0% | |
| ACTTATGTTACGTGTTCTAG+CGG | + | chr1_1:68592948-68592967 | Msa0039080:CDS | 35.0% | |
| !! | TAGCGGATATTTTATCACAG+CGG | + | chr1_1:68592965-68592984 | Msa0039080:CDS | 35.0% |
| !!! | AAATAGAGTTTTCTGAGGCA+GGG | - | chr1_1:68593055-68593074 | None:intergenic | 35.0% |
| !!! | AAAATAGAGTTTTCTGAGGC+AGG | - | chr1_1:68593056-68593075 | None:intergenic | 35.0% |
| TGTCAAAAGCAAACAAAGCA+CGG | - | chr1_1:68593088-68593107 | None:intergenic | 35.0% | |
| TGAATTTCCCATTGTTGAAC+AGG | - | chr1_1:68593192-68593211 | None:intergenic | 35.0% | |
| AACAATGGGAAATTCAGAGA+CGG | + | chr1_1:68593196-68593215 | Msa0039080:CDS | 35.0% | |
| TACGGGGAAAAATTTACACT+GGG | - | chr1_1:68593335-68593354 | None:intergenic | 35.0% | |
| ATTAACCAACTTTAGGTACG+GGG | - | chr1_1:68593351-68593370 | None:intergenic | 35.0% | |
| CGTCACAATTAACCAACTTT+AGG | - | chr1_1:68593358-68593377 | None:intergenic | 35.0% | |
| !! | GGTGACATTGCATTATTTTG+TGG | + | chr1_1:68593473-68593492 | Msa0039080:CDS | 35.0% |
| ATTGAGCAATCCGAATAGAT+GGG | + | chr1_1:68593526-68593545 | Msa0039080:CDS | 35.0% | |
| AATACGCCAATGCATAATCG+CGG | - | chr1_1:68590382-68590401 | None:intergenic | 40.0% | |
| AAAACTCCTAAAGCTTCTCC+AGG | + | chr1_1:68590457-68590476 | Msa0039080:CDS | 40.0% | |
| TATAATCTCTTCTTCCAGCC+TGG | - | chr1_1:68590478-68590497 | None:intergenic | 40.0% | |
| TGATTTGATGTTCCTTTGGC+AGG | - | chr1_1:68590607-68590626 | None:intergenic | 40.0% | |
| TTAGTAACTAACCAGTGGTG+TGG | - | chr1_1:68590634-68590653 | None:intergenic | 40.0% | |
| AGCATATGGTAGAAACATGG+CGG | - | chr1_1:68590702-68590721 | None:intergenic | 40.0% | |
| !! | CATAATAGGATGGGCTGAAT+AGG | - | chr1_1:68590970-68590989 | None:intergenic | 40.0% |
| ! | AAAGAGATAGCAAAGGGTGT+GGG | - | chr1_1:68591007-68591026 | None:intergenic | 40.0% |
| CTCATCTCACAAGTGATTAC+AGG | + | chr1_1:68591126-68591145 | Msa0039080:intron | 40.0% | |
| ! | GCCAAGGATTTTAAATTGGG+GGG | + | chr1_1:68591197-68591216 | Msa0039080:intron | 40.0% |
| ! | ACCCCCCAATTTAAAATCCT+TGG | - | chr1_1:68591201-68591220 | None:intergenic | 40.0% |
| TAATTCTTCCCGAGCATCTA+TGG | + | chr1_1:68591339-68591358 | Msa0039080:intron | 40.0% | |
| ! | CATAAGTCAAGATGATGGCA+AGG | - | chr1_1:68591397-68591416 | None:intergenic | 40.0% |
| GCCATCATCTTGACTTATGT+TGG | + | chr1_1:68591398-68591417 | Msa0039080:intron | 40.0% | |
| GTTAATTGTCCACACTGTCT+AGG | + | chr1_1:68591422-68591441 | Msa0039080:intron | 40.0% | |
| AAATAGAGTCCTAGACAGTG+TGG | - | chr1_1:68591434-68591453 | None:intergenic | 40.0% | |
| ACAACAAATTCTGACTGCAG+AGG | - | chr1_1:68591541-68591560 | None:intergenic | 40.0% | |
| GTGCTTTACCCCTGTAATAT+AGG | + | chr1_1:68592208-68592227 | Msa0039080:intron | 40.0% | |
| CAAAATCGATGACATGTGAG+GGG | - | chr1_1:68592418-68592437 | None:intergenic | 40.0% | |
| CGGAAATGGCCTATATTACA+TGG | + | chr1_1:68592529-68592548 | Msa0039080:intron | 40.0% | |
| TACAGGGAAAAAGGTGAAGA+AGG | + | chr1_1:68592662-68592681 | Msa0039080:intron | 40.0% | |
| GATGACCACTTTCAATTTGC+CGG | + | chr1_1:68592747-68592766 | Msa0039080:CDS | 40.0% | |
| TTGGTCGGGTATGCTAATAA+AGG | - | chr1_1:68592886-68592905 | None:intergenic | 40.0% | |
| AGGTGATAAACTCTTTGGTC+GGG | - | chr1_1:68592900-68592919 | None:intergenic | 40.0% | |
| CAGGTGATAAACTCTTTGGT+CGG | - | chr1_1:68592901-68592920 | None:intergenic | 40.0% | |
| TCTCCAGGTGATAAACTCTT+TGG | - | chr1_1:68592905-68592924 | None:intergenic | 40.0% | |
| ! | AGCGGATATTTTATCACAGC+GGG | + | chr1_1:68592966-68592985 | Msa0039080:CDS | 40.0% |
| TTGGGTTACCTGTTCAACAA+TGG | + | chr1_1:68593181-68593200 | Msa0039080:CDS | 40.0% | |
| TGGGTTACCTGTTCAACAAT+GGG | + | chr1_1:68593182-68593201 | Msa0039080:CDS | 40.0% | |
| GTACGGGGAAAAATTTACAC+TGG | - | chr1_1:68593336-68593355 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCGTACCTAAAGT+TGG | + | chr1_1:68593343-68593362 | Msa0039080:CDS | 40.0% |
| ! | TTGTGACGAGCAACTTTTAG+TGG | + | chr1_1:68593370-68593389 | Msa0039080:CDS | 40.0% |
| CATTGAGCAATCCGAATAGA+TGG | + | chr1_1:68593525-68593544 | Msa0039080:CDS | 40.0% | |
| TTGAGCAATCCGAATAGATG+GGG | + | chr1_1:68593527-68593546 | Msa0039080:CDS | 40.0% | |
| CACTCATATCCCCATCTATT+CGG | - | chr1_1:68593539-68593558 | None:intergenic | 40.0% | |
| ATCAAACACATTGGTGCATC+AGG | - | chr1_1:68593656-68593675 | None:intergenic | 40.0% | |
| CAATCGAGCATCAAACACAT+TGG | - | chr1_1:68593665-68593684 | None:intergenic | 40.0% | |
| CAATGTGTTTGATGCTCGAT+TGG | + | chr1_1:68593663-68593682 | Msa0039080:CDS | 40.0% | |
| TTGATGTTCCTTTGGCAGGA+AGG | - | chr1_1:68590603-68590622 | None:intergenic | 45.0% | |
| !! | ATAGGATGGGCTGAATAGGT+GGG | - | chr1_1:68590966-68590985 | None:intergenic | 45.0% |
| !! | AATAGGATGGGCTGAATAGG+TGG | - | chr1_1:68590967-68590986 | None:intergenic | 45.0% |
| GAAAGAGATAGCAAAGGGTG+TGG | - | chr1_1:68591008-68591027 | None:intergenic | 45.0% | |
| ATGGACGAAGTTGCAATGAG+TGG | - | chr1_1:68591101-68591120 | None:intergenic | 45.0% | |
| AGCCAAGGACAAAAGATGTG+GGG | - | chr1_1:68591252-68591271 | None:intergenic | 45.0% | |
| CAGCCAAGGACAAAAGATGT+GGG | - | chr1_1:68591253-68591272 | None:intergenic | 45.0% | |
| TCAGCCAAGGACAAAAGATG+TGG | - | chr1_1:68591254-68591273 | None:intergenic | 45.0% | |
| ! | CAAGATGATGGCAAGGGTTT+AGG | - | chr1_1:68591390-68591409 | None:intergenic | 45.0% |
| ! | TCTGAGTTGGGCTATTGACA+AGG | + | chr1_1:68591458-68591477 | Msa0039080:intron | 45.0% |
| GGAAAAGGTCAAGTAGTGAG+AGG | - | chr1_1:68591955-68591974 | None:intergenic | 45.0% | |
| AGAGAACCGTGAACTTCCTT+TGG | + | chr1_1:68592689-68592708 | Msa0039080:CDS | 45.0% | |
| GCACATCCAAAGGAAGTTCA+CGG | - | chr1_1:68592698-68592717 | None:intergenic | 45.0% | |
| ACACACCGGCAAATTGAAAG+TGG | - | chr1_1:68592755-68592774 | None:intergenic | 45.0% | |
| CGACCAAAGAGTTTATCACC+TGG | + | chr1_1:68592899-68592918 | Msa0039080:CDS | 45.0% | |
| !! | GGAAGTACTTCATCATCTCC+AGG | - | chr1_1:68592920-68592939 | None:intergenic | 45.0% |
| ! | GCGGATATTTTATCACAGCG+GGG | + | chr1_1:68592967-68592986 | Msa0039080:CDS | 45.0% |
| ! | CGGATATTTTATCACAGCGG+GGG | + | chr1_1:68592968-68592987 | Msa0039080:CDS | 45.0% |
| ! | TGCTTTTGACAAATGCTCCG+AGG | + | chr1_1:68593097-68593116 | Msa0039080:CDS | 45.0% |
| !! | AGAGACGGTTGTTGACTTTG+TGG | + | chr1_1:68593211-68593230 | Msa0039080:CDS | 45.0% |
| TCACCAACATGGCCAACATA+GGG | + | chr1_1:68593258-68593277 | Msa0039080:CDS | 45.0% | |
| !!! | AATTTTTTATTTTATTTTAC+AGG | + | chr1_1:68592498-68592517 | Msa0039080:intron | 5.0% |
| !!! | ATTTTTTATTTTATTTTACA+GGG | + | chr1_1:68592499-68592518 | Msa0039080:intron | 5.0% |
| ATGCATAATCGCGGACGCTT+GGG | - | chr1_1:68590373-68590392 | None:intergenic | 50.0% | |
| AATGCATAATCGCGGACGCT+TGG | - | chr1_1:68590374-68590393 | None:intergenic | 50.0% | |
| AAGCGTCCGCGATTATGCAT+TGG | + | chr1_1:68590373-68590392 | Msa0039080:CDS | 50.0% | |
| TTCCAGCCTGGAGAAGCTTT+AGG | - | chr1_1:68590466-68590485 | None:intergenic | 50.0% | |
| AGAGTGAAGGGGCTGCTTAA+AGG | + | chr1_1:68590548-68590567 | Msa0039080:CDS | 50.0% | |
| GAGTGAAGGGGCTGCTTAAA+GGG | + | chr1_1:68590549-68590568 | Msa0039080:CDS | 50.0% | |
| ATTCAACGCCTTCCTGCCAA+AGG | + | chr1_1:68590592-68590611 | Msa0039080:CDS | 50.0% | |
| CAAATCACACTCCACACCAC+TGG | + | chr1_1:68590620-68590639 | Msa0039080:CDS | 50.0% | |
| GTTGTAAGAGCAGTTGTCGC+AGG | - | chr1_1:68590863-68590882 | None:intergenic | 50.0% | |
| ! | GACCCCACATCTTTTGTCCT+TGG | + | chr1_1:68591247-68591266 | Msa0039080:intron | 50.0% |
| TACGCGACCATTAGAAAGGG+TGG | + | chr1_1:68591312-68591331 | Msa0039080:intron | 50.0% | |
| TACAGGGGGTAAACCGGAAA+TGG | + | chr1_1:68592515-68592534 | Msa0039080:intron | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | chr1_1:68592763-68592782 | Msa0039080:CDS | 50.0% | |
| CCTCCAATTCTTGCACACAC+CGG | - | chr1_1:68592769-68592788 | None:intergenic | 50.0% | |
| CGGTGTGTGCAAGAATTGGA+GGG | + | chr1_1:68592767-68592786 | Msa0039080:CDS | 50.0% | |
| GTCACCAACATGGCCAACAT+AGG | + | chr1_1:68593257-68593276 | Msa0039080:CDS | 50.0% | |
| CACCAACATGGCCAACATAG+GGG | + | chr1_1:68593259-68593278 | Msa0039080:CDS | 50.0% | |
| TACCCCTATGTTGGCCATGT+TGG | - | chr1_1:68593264-68593283 | None:intergenic | 50.0% | |
| CAAGCTGAGTACCCCTATGT+TGG | - | chr1_1:68593273-68593292 | None:intergenic | 50.0% | |
| TGCATAATCGCGGACGCTTG+GGG | - | chr1_1:68590372-68590391 | None:intergenic | 55.0% | |
| CTCCTAAAGCTTCTCCAGGC+TGG | + | chr1_1:68590461-68590480 | Msa0039080:CDS | 55.0% | |
| GTAAGAGCAGTTGTCGCAGG+TGG | - | chr1_1:68590860-68590879 | None:intergenic | 55.0% | |
| CCGGTGTGTGCAAGAATTGG+AGG | + | chr1_1:68592766-68592785 | Msa0039080:CDS | 55.0% | |
| CACATTGGTGCATCAGGAGC+TGG | - | chr1_1:68593650-68593669 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 68590359 | 68593733 | 68590359 | ID=Msa0039080;Name=Msa0039080 |
| chr1_1 | mRNA | 68590359 | 68593733 | 68590359 | ID=Msa0039080-mRNA-1;Parent=Msa0039080;Name=Msa0039080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0|1|1|1|2|0|449 |
| chr1_1 | exon | 68590359 | 68590641 | 68590359 | ID=Msa0039080-mRNA-1:exon:22397;Parent=Msa0039080-mRNA-1 |
| chr1_1 | exon | 68592667 | 68593733 | 68592667 | ID=Msa0039080-mRNA-1:exon:22398;Parent=Msa0039080-mRNA-1 |
| chr1_1 | CDS | 68590359 | 68590641 | 68590359 | ID=Msa0039080-mRNA-1:cds;Parent=Msa0039080-mRNA-1 |
| chr1_1 | CDS | 68592667 | 68593733 | 68592667 | ID=Msa0039080-mRNA-1:cds;Parent=Msa0039080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
