AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040070 MtrunA17_Chr1g0204651 98.462 325 5 0 363 687 16 340 0.0 661
Msa0040070 MtrunA17_Chr1g0204651 88.201 339 39 1 5 342 2 340 0.0 613
Msa0040070 MtrunA17_Chr7g0274061 64.793 338 115 1 9 342 12 349 2.74e-162 470
Msa0040070 MtrunA17_Chr7g0274061 65.854 328 109 1 363 687 22 349 3.80e-161 468
Msa0040070 MtrunA17_Chr7g0274041 63.127 339 122 3 6 342 5 342 2.80e-159 462
Msa0040070 MtrunA17_Chr7g0274041 61.963 326 122 2 363 687 18 342 4.03e-152 444
Msa0040070 MtrunA17_Chr7g0274071 62.941 340 123 2 3 342 9 345 1.95e-157 458
Msa0040070 MtrunA17_Chr7g0274071 63.692 325 115 2 363 687 24 345 7.36e-154 449
Msa0040070 MtrunA17_Chr7g0222171 57.313 335 136 3 8 341 4 332 1.53e-130 389
Msa0040070 MtrunA17_Chr7g0222171 58.462 325 127 5 363 686 15 332 4.22e-126 377
Msa0040070 MtrunA17_Chr7g0221791 56.213 338 135 5 8 341 4 332 7.24e-126 377
Msa0040070 MtrunA17_Chr7g0221791 57.538 325 130 6 363 686 15 332 2.59e-122 367
Msa0040070 MtrunA17_Chr7g0222121 51.075 372 135 6 8 341 4 366 4.43e-118 358
Msa0040070 MtrunA17_Chr7g0222121 52.089 359 130 7 363 686 15 366 1.10e-114 349
Msa0040070 MtrunA17_Chr7g0274081 62.755 196 71 1 494 687 2 197 3.69e-88 274
Msa0040070 MtrunA17_Chr7g0274081 60.204 196 76 1 149 342 2 197 5.57e-82 258
Msa0040070 MtrunA17_Chr7g0221781 53.488 129 58 2 8 136 4 130 5.27e-37 135
Msa0040070 MtrunA17_Chr7g0221781 53.782 119 52 3 363 481 15 130 1.45e-31 120
Msa0040070 MtrunA17_Chr7g0222141 81.818 66 12 0 499 564 65 130 2.07e-32 123
Msa0040070 MtrunA17_Chr7g0222141 57.732 97 32 1 123 219 43 130 5.16e-30 116
Msa0040070 MtrunA17_Chr7g0274091 57.292 96 40 1 3 98 5 99 2.47e-32 121
Msa0040070 MtrunA17_Chr7g0274091 60.227 88 33 1 363 448 20 107 8.82e-29 111
Msa0040070 MtrunA17_Chr7g0221771 50.000 110 51 2 577 686 1 106 6.02e-31 117
Msa0040070 MtrunA17_Chr7g0221771 49.524 105 49 1 237 341 6 106 4.37e-30 114
Msa0040070 MtrunA17_Chr1g0169691 28.527 319 204 9 13 315 6 316 6.34e-27 112
Msa0040070 MtrunA17_Chr1g0169691 30.000 320 187 12 363 660 12 316 2.18e-24 104
Msa0040070 MtrunA17_Chr7g0222151 59.211 76 31 0 577 652 1 76 1.23e-26 103
Msa0040070 MtrunA17_Chr7g0222151 59.211 76 31 0 232 307 1 76 5.96e-26 101
Msa0040070 MtrunA17_Chr3g0095421 29.012 324 196 11 10 311 37 348 9.58e-26 109
Msa0040070 MtrunA17_Chr3g0095421 28.931 318 187 11 363 656 46 348 1.81e-24 105
Msa0040070 MtrunA17_Chr3g0127491 28.571 336 192 16 7 315 35 349 2.33e-24 105
Msa0040070 MtrunA17_Chr3g0127491 26.870 361 210 15 326 660 17 349 7.96e-23 100
Msa0040070 MtrunA17_Chr1g0167421 27.108 332 191 12 12 299 65 389 7.57e-22 98.6
Msa0040070 MtrunA17_Chr1g0167421 26.087 299 177 12 390 646 95 391 4.73e-17 84.0
Msa0040070 MtrunA17_Chr8g0380261 25.641 351 208 11 8 312 40 383 5.29e-21 95.9
Msa0040070 MtrunA17_Chr8g0380261 25.159 314 188 8 390 658 73 384 4.38e-20 93.2
Msa0040070 MtrunA17_Chr4g0049341 28.980 245 159 6 12 247 5 243 3.03e-19 89.4
Msa0040070 MtrunA17_Chr4g0049341 27.559 254 161 8 363 600 12 258 6.99e-17 82.4
Msa0040070 MtrunA17_Chr4g0018921 28.228 333 161 15 6 311 1 282 8.70e-15 75.9
Msa0040070 MtrunA17_Chr4g0018921 25.079 315 174 10 376 668 20 294 1.03e-12 69.7
Msa0040070 MtrunA17_Chr7g0221801 47.826 69 35 1 8 76 4 71 2.54e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040070 AT1G60710.1 56.716 335 141 3 8 341 7 338 1.45e-126 379
Msa0040070 AT1G60710.1 57.231 325 134 4 363 686 18 338 9.00e-123 369
Msa0040070 AT1G60680.1 56.615 325 137 3 363 686 18 339 1.37e-125 377
Msa0040070 AT1G60680.1 55.490 337 145 4 7 341 6 339 6.26e-125 375
Msa0040070 AT1G60690.1 54.227 343 153 3 7 348 6 345 2.72e-125 376
Msa0040070 AT1G60690.1 55.692 325 139 4 363 686 18 338 4.58e-122 367
Msa0040070 AT1G60750.1 55.263 342 133 4 1 341 1 323 3.43e-125 375
Msa0040070 AT1G60750.1 55.864 324 124 4 363 686 19 323 6.12e-121 364
Msa0040070 AT1G60730.1 55.224 335 146 3 8 341 7 338 4.87e-123 370
Msa0040070 AT1G60730.1 55.385 325 140 4 363 686 18 338 5.41e-120 362
Msa0040070 AT1G10810.1 55.655 336 143 5 8 341 7 338 4.11e-122 367
Msa0040070 AT1G10810.1 55.385 325 140 4 363 686 18 338 1.71e-117 356
Msa0040070 AT1G60730.3 52.113 355 146 4 8 341 7 358 5.22e-118 358
Msa0040070 AT1G60730.3 52.174 345 140 5 363 686 18 358 5.37e-115 350
Msa0040070 AT1G10810.3 58.955 268 106 3 420 686 22 286 2.21e-103 317
Msa0040070 AT1G10810.3 57.303 267 111 2 76 341 22 286 4.83e-101 311
Msa0040070 AT1G60680.2 64.186 215 75 2 7 220 6 219 3.96e-89 278
Msa0040070 AT1G60680.2 65.025 203 70 1 363 565 18 219 2.68e-87 274
Msa0040070 AT1G10810.2 59.402 234 91 4 8 239 7 238 3.81e-86 271
Msa0040070 AT1G10810.2 60.664 211 80 3 363 572 18 226 8.25e-79 252
Msa0040070 AT1G60730.2 53.103 145 65 2 8 152 7 148 5.54e-41 148
Msa0040070 AT1G60730.2 51.852 135 61 3 363 497 18 148 3.72e-35 132
Msa0040070 AT1G04690.1 31.250 304 182 10 13 299 6 299 1.00e-29 120
Msa0040070 AT1G04690.1 31.561 301 178 10 363 646 12 301 1.12e-28 117
Msa0040070 AT1G06690.1 28.834 326 194 11 10 311 48 359 3.71e-26 111
Msa0040070 AT1G06690.1 28.963 328 190 12 363 662 57 369 7.19e-25 107
Msa0040070 AT5G53580.1 29.129 333 188 15 10 315 39 350 1.50e-23 103
Msa0040070 AT5G53580.1 27.640 322 190 13 364 660 47 350 7.58e-21 95.5
Msa0040070 AT4G33670.1 30.837 227 138 7 1 218 1 217 1.05e-22 100
Msa0040070 AT4G33670.1 28.346 254 159 8 363 600 15 261 6.17e-20 92.0
Msa0040070 AT1G04420.1 26.781 351 202 13 12 315 60 402 1.06e-19 92.4
Msa0040070 AT3G53880.2 24.585 301 162 11 54 330 42 301 4.47e-11 65.1
Msa0040070 AT3G53880.1 26.087 253 124 10 54 282 42 255 5.81e-11 64.7

Find 172 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGACTTTCATCTGGTAAA+TGG 0.227042 1_1:+70039082 Msa0040070:three_prime_UTR
TTATTTCAAGCCTATCTTCT+TGG 0.229354 1_1:+70039063 Msa0040070:three_prime_UTR
AAGGTTTACAGGAGAAAATT+TGG 0.231620 1_1:+70038265 Msa0040070:CDS
TTTGGATGTGGAGGATTATC+TGG 0.250656 1_1:+70032021 Msa0040070:CDS
TTTGGATGTGGAGGATTATC+TGG 0.250656 1_1:+70036909 Msa0040070:CDS
CAGCACTCCCTCACATATTC+AGG 0.270626 1_1:-70032537 None:intergenic
CAGCACTCCCTCACATATTC+AGG 0.270626 1_1:-70037346 None:intergenic
GAAGGAAAGATAAAATATAT+TGG 0.282400 1_1:+70037571 Msa0040070:CDS
GTTCAATTAGCTACAAAGTT+TGG 0.283945 1_1:+70032474 Msa0040070:CDS
AGATGGATGTTCAATTATTA+AGG 0.288430 1_1:+70032071 Msa0040070:CDS
AAGAAATAATTCCACTTTGC+AGG 0.298383 1_1:+70037695 Msa0040070:CDS
GCAAGTCCCAAGAGTTAAAC+TGG 0.317895 1_1:+70031167 Msa0040070:CDS
GAGATCTGATGTATCGAAAA+AGG 0.319260 1_1:-70032115 None:intergenic
GAGATCTGATGTATCGAAAA+AGG 0.319260 1_1:-70037003 None:intergenic
TGCAAATGGAGTATTCCTTA+TGG 0.321118 1_1:+70032865 Msa0040070:CDS
TCCTATTACTGCTTTGGAAA+TGG 0.326973 1_1:+70037642 Msa0040070:CDS
GTCCAATTGGCTACGAAGTT+TGG 0.338391 1_1:+70037280 Msa0040070:CDS
ATAGTATATCACAATATCTT+TGG 0.338665 1_1:+70038867 Msa0040070:CDS
GCTATGCATCCAAGGTTTAC+AGG 0.342718 1_1:+70038254 Msa0040070:CDS
ATTAAGGAAGTATTCAATAG+AGG 0.343469 1_1:+70032087 Msa0040070:CDS
ATTAAGGAAGTATTCAATAG+AGG 0.343469 1_1:+70036975 Msa0040070:CDS
GAAGGAAAGATAAGACATAT+TGG 0.346838 1_1:+70032780 Msa0040070:CDS
TGGAAATGGAGTATTCCTTA+TGG 0.354234 1_1:+70037656 Msa0040070:CDS
ACAAGTCCCAAGAGTCAAAC+TGG 0.359871 1_1:+70036636 Msa0040070:CDS
ATTAGCATGGCTTCTGCATC+AGG 0.361890 1_1:+70033521 Msa0040070:CDS
ATTAGCATGGCTTCTGCATC+AGG 0.361890 1_1:+70038361 Msa0040070:CDS
CAGGTTCACTGGAGTAAATC+TGG 0.365796 1_1:+70033425 Msa0040070:CDS
CAGATTTACTCCAGTGAACC+TGG 0.365930 1_1:-70033424 None:intergenic
AAGCTTACAGTGTCTTCAAT+TGG 0.375485 1_1:-70037442 None:intergenic
GGGTACCCAGTTTGACTCTT+GGG 0.376406 1_1:-70036642 None:intergenic
AGATGGATGCTCAATTATTA+AGG 0.376538 1_1:+70036959 Msa0040070:CDS
AAGCTTACGGTGTCTTCAAT+TGG 0.376667 1_1:-70032633 None:intergenic
ACTGGGTAGCCATGGTTTAG+AGG 0.377445 1_1:+70031185 Msa0040070:CDS
TCCATTTGCAAAGCAGTAAT+AGG 0.379605 1_1:-70032852 None:intergenic
TCCATTTCCAAAGCAGTAAT+AGG 0.379605 1_1:-70037643 None:intergenic
AGTTCATCCTATTACTGCTT+TGG 0.389070 1_1:+70037636 Msa0040070:CDS
TATCTTCTTGGACTTTCATC+TGG 0.389164 1_1:+70039075 Msa0040070:three_prime_UTR
TCCTATTACTGCTTTGCAAA+TGG 0.395606 1_1:+70032851 Msa0040070:CDS
TGGGTACCCAGTTTGACTCT+TGG 0.395833 1_1:-70036643 None:intergenic
TAATTGAACATCCATCTTCA+TGG 0.401357 1_1:-70032065 None:intergenic
TCTAGGTTGGGATTTGGATG+TGG 0.401427 1_1:+70032009 Msa0040070:CDS
CGCCAAACTTCGTAGCCAAT+TGG 0.403863 1_1:-70037282 None:intergenic
TTTGTCTAGTCAGAGCTTGC+TGG 0.406910 1_1:+70037872 Msa0040070:CDS
ATTTCAACAACCTTTAGCTT+TGG 0.407222 1_1:+70031043 Msa0040070:five_prime_UTR
TGGAATGCAGGTGTCTAGGC+TGG 0.407445 1_1:+70036884 Msa0040070:intron
TTGCATTCTTGCAGAGAACT+AGG 0.412767 1_1:+70033088 Msa0040070:intron
AAGGAAAGATAAAATATATT+GGG 0.415250 1_1:+70037572 Msa0040070:CDS
CAGGTGTCTAGGTTGGGATT+TGG 0.416345 1_1:+70032003 Msa0040070:intron
TAATTGAGCATCCATCTTCA+TGG 0.417389 1_1:-70036953 None:intergenic
AAGGAAAGATAAGACATATT+GGG 0.422532 1_1:+70032781 Msa0040070:CDS
ACAGTTTGTCGCAATATAGT+TGG 0.424329 1_1:+70034038 Msa0040070:CDS
CAGGTGTCTAGGCTGGGATT+TGG 0.427729 1_1:+70036891 Msa0040070:intron
TCCCCAGCAATTTCCTCAAC+GGG 0.432009 1_1:-70038833 None:intergenic
GGCTACCCAGTTTAACTCTT+GGG 0.439987 1_1:-70031173 None:intergenic
AGATGAAAGTCCAAGAAGAT+AGG 0.441281 1_1:-70039073 None:intergenic
TCTCTATGCAATTACTTTGG+CGG 0.441447 1_1:-70038905 None:intergenic
GCAATAATTGTGTTGAAGAA+TGG 0.441753 1_1:+70031131 Msa0040070:exon
TGGCTTCTGCATCAGGGAAA+TGG 0.442069 1_1:+70038368 Msa0040070:CDS
TGCAGGAAAGTCAGTGGTAG+AGG 0.445925 1_1:+70037848 Msa0040070:CDS
TGCAGGAAAGTCGGTGGTAG+AGG 0.447986 1_1:+70033153 Msa0040070:CDS
TTCCCAGCGATTTCTGCAAC+AGG 0.449536 1_1:-70034004 None:intergenic
TCACTATGCAATTACTTTGG+CGG 0.451369 1_1:-70034076 None:intergenic
TTCAATGTCACGGGACCATA+AGG 0.451962 1_1:-70032880 None:intergenic
TTCAATGTCACGGGACCATA+AGG 0.451962 1_1:-70037671 None:intergenic
TGGCTACCCAGTTTAACTCT+TGG 0.452145 1_1:-70031174 None:intergenic
AATATGCATCCCAGGTTCAC+TGG 0.452442 1_1:+70033414 Msa0040070:CDS
CTATGAACGAATCAATGTAT+TGG 0.457910 1_1:+70033464 Msa0040070:CDS
TTGGCGTTACTTTATCTGAT+GGG 0.457988 1_1:+70032493 Msa0040070:CDS
TTAAGGAAGTATTCAATAGA+GGG 0.463934 1_1:+70032088 Msa0040070:CDS
TTAAGGAAGTATTCAATAGA+GGG 0.463934 1_1:+70036976 Msa0040070:CDS
TCTAGGCTGGGATTTGGATG+TGG 0.464685 1_1:+70036897 Msa0040070:CDS
GCTTACACAAGAAGATTTGA+AGG 0.464856 1_1:+70038793 Msa0040070:CDS
AAGAAATAATTCCACTCTGC+AGG 0.468173 1_1:+70032904 Msa0040070:CDS
CAAACATGATAATGAAATCA+TGG 0.469776 1_1:+70037034 Msa0040070:CDS
CAATCATGATAATGAAATCA+TGG 0.472249 1_1:+70032146 Msa0040070:CDS
AGGTTGGGATTTGGATGTGG+AGG 0.483229 1_1:+70032012 Msa0040070:CDS
CTATGAACGAATCAATGACT+TGG 0.485970 1_1:+70038304 Msa0040070:CDS
CTCAAACAACTTGTAAATGA+AGG 0.486296 1_1:+70037553 Msa0040070:CDS
ATTAAGACAGTACCGGGGAT+AGG 0.486830 1_1:-70033558 None:intergenic
TTTGCATCATAGACAAAGAA+AGG 0.487750 1_1:+70031109 Msa0040070:five_prime_UTR
TATTTCTTCTTCAATGTCAC+GGG 0.490828 1_1:-70032889 None:intergenic
TATTTCTTCTTCAATGTCAC+GGG 0.490828 1_1:-70037680 None:intergenic
ACTTGCAGAGAGCTTGGCAT+TGG 0.491374 1_1:+70037789 Msa0040070:intron
TTAAGACAGTACCGGGGATA+GGG 0.491603 1_1:-70033557 None:intergenic
CGTTACTTTATCTGATGGGA+TGG 0.494293 1_1:+70037303 Msa0040070:CDS
TCTTGCAGAGAACTAGGGAT+TGG 0.494459 1_1:+70033094 Msa0040070:intron
TTCCAAATAAAAGACCTACT+AGG 0.495848 1_1:-70039132 None:intergenic
TAATGAAATCATGGTTGGTA+AGG 0.496217 1_1:+70032155 Msa0040070:CDS
TAATGAAATCATGGTTGGTA+AGG 0.496217 1_1:+70037043 Msa0040070:CDS
GCTCCCCTCTCCCATGAAGA+TGG 0.496750 1_1:+70032054 Msa0040070:CDS
GCTCCCCTCTCCCATGAAGA+TGG 0.496750 1_1:+70036942 Msa0040070:CDS
GTTCCTGTTGCAGAAATCGC+TGG 0.498019 1_1:+70034001 Msa0040070:CDS
TTTGTGGAATGCAGGTGTCT+AGG 0.498511 1_1:+70036880 Msa0040070:intron
TTTGGCGTTACTTTATCTGA+TGG 0.501663 1_1:+70037298 Msa0040070:CDS
AGAGCTTGGCATTGGAATTG+TGG 0.503993 1_1:+70037797 Msa0040070:CDS
ATAAAGGCAGTACCAGGGAT+AGG 0.507637 1_1:-70038398 None:intergenic
TTTGGCGTTACTTTATCTGA+TGG 0.508572 1_1:+70032492 Msa0040070:CDS
TTGTGTACTTGCAGAGAGCT+TGG 0.508860 1_1:+70037783 Msa0040070:intron
TTCGATACATCAGATCTCTA+CGG 0.509953 1_1:+70032120 Msa0040070:CDS
TCCAAATAAAAGACCTACTA+GGG 0.510890 1_1:-70039131 None:intergenic
GTTCCCGTTGAGGAAATTGC+TGG 0.516063 1_1:+70038830 Msa0040070:CDS
AAGAACTTTGAAAACAACAT+TGG 0.517205 1_1:+70038755 Msa0040070:CDS
TTCGATACATCAGATCTCTA+CGG 0.518721 1_1:+70037008 Msa0040070:CDS
TTGGCGTTACTTTATCTGAT+GGG 0.520907 1_1:+70037299 Msa0040070:CDS
AATTACGATGCCTCCCTAGT+AGG 0.522075 1_1:+70039118 Msa0040070:three_prime_UTR
TTATTTCTTCTTCAATGTCA+CGG 0.524264 1_1:-70032890 None:intergenic
TTATTTCTTCTTCAATGTCA+CGG 0.524264 1_1:-70037681 None:intergenic
TGAAATGCAGGTGTCTAGGT+TGG 0.531272 1_1:+70031996 Msa0040070:intron
CATGATAATGAAATCATGGT+TGG 0.532090 1_1:+70032150 Msa0040070:CDS
CATGATAATGAAATCATGGT+TGG 0.532090 1_1:+70037038 Msa0040070:CDS
AAGAACTTTGAAAACAACAT+TGG 0.532327 1_1:+70033926 Msa0040070:CDS
CTTCTCAATTAGCATTAGCA+TGG 0.532747 1_1:+70033508 Msa0040070:CDS
CTTCTCAATTAGCATTAGCA+TGG 0.532747 1_1:+70038348 Msa0040070:CDS
GCAATAATAGCATTGAAGAA+TGG 0.535037 1_1:+70036609 Msa0040070:CDS
AACATCCATCTTCATGGGAG+AGG 0.535281 1_1:-70032059 None:intergenic
AGCATCCATCTTCATGGGAG+AGG 0.535281 1_1:-70036947 None:intergenic
TGCATTCTTGCAGAGAACTA+GGG 0.536671 1_1:+70033089 Msa0040070:intron
CTCCCCAGCAATTTCCTCAA+CGG 0.536860 1_1:-70038834 None:intergenic
TTCCCGTTGAGGAAATTGCT+GGG 0.537080 1_1:+70038831 Msa0040070:CDS
TAAAGGCAGTACCAGGGATA+GGG 0.538643 1_1:-70038397 None:intergenic
GTAGAGAAGTTATTTCATTG+AGG 0.540205 1_1:-70038984 None:intergenic
CATAACAGGCTATGCATCCA+AGG 0.541468 1_1:+70038246 Msa0040070:intron
AATTGAACATCCATCTTCAT+GGG 0.543483 1_1:-70032064 None:intergenic
GAAATGCAGGTGTCTAGGTT+GGG 0.546430 1_1:+70031997 Msa0040070:intron
AATTGAGCATCCATCTTCAT+GGG 0.547134 1_1:-70036952 None:intergenic
TTTGTGAAATGCAGGTGTCT+AGG 0.548699 1_1:+70031992 Msa0040070:intron
CATGCTAATGCTAATTGAGA+AGG 0.548715 1_1:-70033507 None:intergenic
CATGCTAATGCTAATTGAGA+AGG 0.548715 1_1:-70038347 None:intergenic
AGGCTGGGATTTGGATGTGG+AGG 0.548733 1_1:+70036900 Msa0040070:CDS
TTTGCCTAGTCAGAGCGTAC+TGG 0.551045 1_1:+70033177 Msa0040070:CDS
GAAGCGAGTCTCAAGCGGCT+TGG 0.554391 1_1:+70032561 Msa0040070:CDS
AGCACTCCCTCACATATTCA+GGG 0.555636 1_1:-70032536 None:intergenic
AGCACTCCCTCACATATTCA+GGG 0.555636 1_1:-70037345 None:intergenic
ACATCCATCTTCATGGGAGA+GGG 0.558062 1_1:-70032058 None:intergenic
GCATCCATCTTCATGGGAGA+GGG 0.558062 1_1:-70036946 None:intergenic
TTCTGAAGCAGTTCCCGTTG+AGG 0.562114 1_1:+70038820 Msa0040070:CDS
TGGCGTTACTTTATCTGATG+GGG 0.564408 1_1:+70032494 Msa0040070:CDS
TGTAACAGAATATGCATCCC+AGG 0.566555 1_1:+70033406 Msa0040070:intron
AGAGTTAAACTGGGTAGCCA+TGG 0.572311 1_1:+70031177 Msa0040070:CDS
GATAAGACATATTGGGCTGT+CGG 0.578864 1_1:+70032788 Msa0040070:CDS
CATACCAGTACGCTCTGACT+AGG 0.584560 1_1:-70033181 None:intergenic
TTCCTGTTGCAGAAATCGCT+GGG 0.587242 1_1:+70034002 Msa0040070:CDS
TAAGGAAGTATTCAATAGAG+GGG 0.591144 1_1:+70032089 Msa0040070:CDS
TAAGGAAGTATTCAATAGAG+GGG 0.591144 1_1:+70036977 Msa0040070:CDS
CAATTAATATACCTGCAAAG+TGG 0.593814 1_1:-70037706 None:intergenic
GGAATGCAGGTGTCTAGGCT+GGG 0.598837 1_1:+70036885 Msa0040070:intron
AATGGCATAATCCCTATCCC+TGG 0.605320 1_1:+70038386 Msa0040070:CDS
AAAATATATTGGGTTGTCAG+AGG 0.607927 1_1:+70037582 Msa0040070:CDS
AGGTACCCCTGAATATGTGA+GGG 0.608935 1_1:+70032530 Msa0040070:CDS
AGGTACCCCTGAATATGTGA+GGG 0.608935 1_1:+70037339 Msa0040070:CDS
AGAGTCAAACTGGGTACCCA+AGG 0.612909 1_1:+70036646 Msa0040070:CDS
AGATTTACTCCAGTGAACCT+GGG 0.614522 1_1:-70033423 None:intergenic
ATTGGGCTGTCGGACGCTAG+TGG 0.619279 1_1:+70032798 Msa0040070:CDS
CATCCATCTTCATGGGAGAG+GGG 0.619881 1_1:-70032057 None:intergenic
AAGGTACCCCTGAATATGTG+AGG 0.623139 1_1:+70032529 Msa0040070:CDS
AAGGTACCCCTGAATATGTG+AGG 0.623139 1_1:+70037338 Msa0040070:CDS
TCCCGTTGAGGAAATTGCTG+GGG 0.626472 1_1:+70038832 Msa0040070:CDS
CATCCATCTTCATGGGAGAG+GGG 0.630999 1_1:-70036945 None:intergenic
GCTGTGAAGCTAGTCTCAAG+CGG 0.634148 1_1:+70037365 Msa0040070:CDS
TTGGAACTGAAGTGTCAACT+CGG 0.636787 1_1:-70032614 None:intergenic
CAATTTGTCTACCTGCAGAG+TGG 0.638313 1_1:-70032915 None:intergenic
CAAGTCCCAAGAGTTAAACT+GGG 0.641040 1_1:+70031168 Msa0040070:CDS
GTATGTTGGTACGGAGACAG+TGG 0.643336 1_1:+70031018 None:intergenic
AATGACATAATCCCTATCCC+CGG 0.651246 1_1:+70033546 Msa0040070:CDS
TTAGCATGGCTTCTGCATCA+GGG 0.655505 1_1:+70033522 Msa0040070:CDS
TTAGCATGGCTTCTGCATCA+GGG 0.655505 1_1:+70038362 Msa0040070:CDS
GAAAGTTTACCTCTAAACCA+TGG 0.657755 1_1:-70031194 None:intergenic
CAAGTCCCAAGAGTCAAACT+GGG 0.662786 1_1:+70036637 Msa0040070:CDS
GCTGTGAAGCGAGTCTCAAG+CGG 0.663018 1_1:+70032556 Msa0040070:CDS
AAATAAAAGACCTACTAGGG+AGG 0.668609 1_1:-70039128 None:intergenic
GCACTCCCTCACATATTCAG+GGG 0.678614 1_1:-70032535 None:intergenic
GCACTCCCTCACATATTCAG+GGG 0.678614 1_1:-70037344 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTAATTAATATTAA+AGG + chr1_1:70036412-70036431 Msa0040070:intron 0.0%
!! AAAAAAAAAAAAAGATAACT+TGG - chr1_1:70034921-70034940 None:intergenic 10.0%
!!! AGTTATCTTTTTTTTTTTTT+TGG + chr1_1:70034921-70034940 Msa0040070:intron 10.0%
!! TAAAATTTACTAATCAATAA+AGG + chr1_1:70038515-70038534 Msa0040070:intron 10.0%
!! TAAATAAGTAAAAACTTCAA+AGG - chr1_1:70031654-70031673 None:intergenic 15.0%
!!! TGATATTATATAGTTCTATA+TGG - chr1_1:70031857-70031876 None:intergenic 15.0%
!!! TTTTTGTAAAAGAAAACTTA+AGG + chr1_1:70032401-70032420 Msa0040070:intron 15.0%
!!! TATTTTTTACCATCATTATA+AGG - chr1_1:70033262-70033281 None:intergenic 15.0%
!! AAAATAACTTTAATGAGATA+AGG + chr1_1:70033276-70033295 Msa0040070:intron 15.0%
!!! TTTTTTATTTCTTTATCAAG+TGG - chr1_1:70033701-70033720 None:intergenic 15.0%
!! TTGAATATAAATAGTAATTG+TGG + chr1_1:70034221-70034240 Msa0040070:intron 15.0%
!!! TATCTTTTTTTTTTTTTTGG+TGG + chr1_1:70034924-70034943 Msa0040070:intron 15.0%
!!! AAATTTATAGCTTTTACTAA+CGG + chr1_1:70035313-70035332 Msa0040070:intron 15.0%
!! ACTAATGAAAAATAAATCTA+AGG + chr1_1:70036183-70036202 Msa0040070:intron 15.0%
!!! GCACTTTTTTTATATTAATT+TGG + chr1_1:70036465-70036484 Msa0040070:intron 15.0%
!! AAGGAAAGATAAAATATATT+GGG + chr1_1:70037572-70037591 Msa0040070:CDS 15.0%
!! TGAAGAATATCTTATTATAA+TGG + chr1_1:70037942-70037961 Msa0040070:intron 15.0%
!! TGTAGAATTTCTTATTATAA+TGG + chr1_1:70038126-70038145 Msa0040070:intron 15.0%
!!! TTCTTCTGAAATATAAATAA+AGG - chr1_1:70038417-70038436 None:intergenic 15.0%
!! CATATATCATGAAAGATAAT+AGG - chr1_1:70031692-70031711 None:intergenic 20.0%
!!! AATCTTTTGTTTAATGTTTG+TGG + chr1_1:70031935-70031954 Msa0040070:intron 20.0%
!! ATTTCACAAAATGAAAAAAC+AGG - chr1_1:70031982-70032001 None:intergenic 20.0%
!!! TCAAAATGATTTATTAGCTT+TGG - chr1_1:70032192-70032211 None:intergenic 20.0%
!! ATATATTATTAAGACAGTAC+CGG - chr1_1:70033568-70033587 None:intergenic 20.0%
!! TACAATATCTACATACTTTA+TGG - chr1_1:70033835-70033854 None:intergenic 20.0%
!! TTATATTTGTTTGATACCAT+AGG + chr1_1:70033890-70033909 Msa0040070:intron 20.0%
!! TATATTTGTTTGATACCATA+GGG + chr1_1:70033891-70033910 Msa0040070:intron 20.0%
!! AAAAATGTTTACAAGAGAAA+AGG + chr1_1:70034143-70034162 Msa0040070:intron 20.0%
!! AAAATGTTTACAAGAGAAAA+GGG + chr1_1:70034144-70034163 Msa0040070:intron 20.0%
!!! AGTAAATTTAGGATAATATC+TGG - chr1_1:70034393-70034412 None:intergenic 20.0%
!! ATTCAATACAGAGTAAATTT+AGG - chr1_1:70034404-70034423 None:intergenic 20.0%
!! TACAATAGTAAAAGATAACT+TGG - chr1_1:70035028-70035047 None:intergenic 20.0%
!!! TTTTAATTATGAATGGTTAC+AGG - chr1_1:70035255-70035274 None:intergenic 20.0%
!!! CAAAGTCTTTTAATTATGAA+TGG - chr1_1:70035262-70035281 None:intergenic 20.0%
!! AAGTATCTATTGATGAAATT+TGG - chr1_1:70035289-70035308 None:intergenic 20.0%
!! TCATCATCAACAAATAAATA+TGG + chr1_1:70035534-70035553 Msa0040070:intron 20.0%
!! TACTAACATTATAGACAATA+GGG - chr1_1:70036145-70036164 None:intergenic 20.0%
!! TTACTAACATTATAGACAAT+AGG - chr1_1:70036146-70036165 None:intergenic 20.0%
!! CTATAATGTTAGTAAATTCA+TGG + chr1_1:70036151-70036170 Msa0040070:intron 20.0%
!!! ATGATTAGTTCAAAATTAAG+AGG + chr1_1:70036735-70036754 Msa0040070:intron 20.0%
!!! AAATACATAAGCATTTTGTA+TGG + chr1_1:70037106-70037125 Msa0040070:intron 20.0%
!! GAAGGAAAGATAAAATATAT+TGG + chr1_1:70037571-70037590 Msa0040070:CDS 20.0%
!!! AGAAGAATATGATGATTTTT+TGG + chr1_1:70038430-70038449 Msa0040070:intron 20.0%
!! ATATTTGTTTGATACCATAT+AGG + chr1_1:70038719-70038738 Msa0040070:intron 20.0%
!! TATTTGTTTGATACCATATA+GGG + chr1_1:70038720-70038739 Msa0040070:intron 20.0%
!! ATAGTATATCACAATATCTT+TGG + chr1_1:70038867-70038886 Msa0040070:CDS 20.0%
! AACAAATCTTAATGATGAAG+TGG - chr1_1:70031259-70031278 None:intergenic 25.0%
!! TGTTTTCTTCATCTTAATGT+TGG - chr1_1:70031303-70031322 None:intergenic 25.0%
!!! GAAGAAAACATAAAAGTACT+AGG + chr1_1:70031313-70031332 Msa0040070:intron 25.0%
! ATGTTAAAGTTATCAGTTGA+AGG - chr1_1:70031378-70031397 None:intergenic 25.0%
! CTGATAACTTTAACATTAAG+AGG + chr1_1:70031382-70031401 Msa0040070:intron 25.0%
!! GTTTTTATGTGTGACTAAAA+TGG - chr1_1:70031723-70031742 None:intergenic 25.0%
! TGGAATTCTAAATTTCTAAC+TGG - chr1_1:70031770-70031789 None:intergenic 25.0%
! ACTATAGAGATTACTTATGA+TGG - chr1_1:70031790-70031809 None:intergenic 25.0%
!! TTTTTCATTTTGTGAAATGC+AGG + chr1_1:70031984-70032003 Msa0040070:intron 25.0%
! AGATGGATGTTCAATTATTA+AGG + chr1_1:70032071-70032090 Msa0040070:CDS 25.0%
!!! ATTAAGGAAGTATTCAATAG+AGG + chr1_1:70032087-70032106 Msa0040070:CDS 25.0%
!!! TTAAGGAAGTATTCAATAGA+GGG + chr1_1:70032088-70032107 Msa0040070:CDS 25.0%
!! CAATCATGATAATGAAATCA+TGG + chr1_1:70032146-70032165 Msa0040070:CDS 25.0%
!!! TCATTTTGATTGTAAGTCTA+AGG + chr1_1:70032203-70032222 Msa0040070:intron 25.0%
!!! CATTTTGATTGTAAGTCTAA+GGG + chr1_1:70032204-70032223 Msa0040070:intron 25.0%
!!! ATTCATCTATTTTCAAGTGT+TGG - chr1_1:70032697-70032716 None:intergenic 25.0%
! CTTAAAAAACTGGTAAATGA+AGG + chr1_1:70032762-70032781 Msa0040070:CDS 25.0%
! AAGGAAAGATAAGACATATT+GGG + chr1_1:70032781-70032800 Msa0040070:CDS 25.0%
!! TTATTTCTTCTTCAATGTCA+CGG - chr1_1:70032893-70032912 None:intergenic 25.0%
!! TCCAGTTAGTTTGATATATT+TGG + chr1_1:70032978-70032997 Msa0040070:intron 25.0%
!! ATATTTATAGCATTTTCCCT+CGG - chr1_1:70033331-70033350 None:intergenic 25.0%
! TATATTATTAAGACAGTACC+GGG - chr1_1:70033567-70033586 None:intergenic 25.0%
! ATCAAACAAATATAAGCACT+TGG - chr1_1:70033885-70033904 None:intergenic 25.0%
!! AAGAACTTTGAAAACAACAT+TGG + chr1_1:70033926-70033945 Msa0040070:CDS 25.0%
! TTGTGGAAGTTATTAAGATT+AGG + chr1_1:70034238-70034257 Msa0040070:intron 25.0%
! TTATTAAGATTAGGCAGTTA+GGG + chr1_1:70034247-70034266 Msa0040070:intron 25.0%
! AGATCACACATAATAACATT+AGG - chr1_1:70034328-70034347 None:intergenic 25.0%
! TGGTACAAACTGAATTAATA+CGG - chr1_1:70034363-70034382 None:intergenic 25.0%
! GGATAATATCTGGTATTTAT+TGG - chr1_1:70034383-70034402 None:intergenic 25.0%
!!! TTTTGATGGTTTTGATAAGA+GGG + chr1_1:70034467-70034486 Msa0040070:intron 25.0%
! TTAGTATATCTGTGAAACAT+AGG - chr1_1:70034687-70034706 None:intergenic 25.0%
!!! CTTTTTTTTTTTTTTGGTGG+TGG + chr1_1:70034927-70034946 Msa0040070:intron 25.0%
! ATTCTCATTAGTTGTAAAGT+GGG - chr1_1:70035100-70035119 None:intergenic 25.0%
! AGTTTCAACTAACATTGTTA+AGG - chr1_1:70035206-70035225 None:intergenic 25.0%
! CATATAGAACATATCATCTT+TGG + chr1_1:70035597-70035616 Msa0040070:intron 25.0%
!!! TAATATCGGTTTAAAAAGCT+CGG + chr1_1:70035698-70035717 Msa0040070:intron 25.0%
! GTTGATCAAACAAATTACAA+TGG + chr1_1:70035723-70035742 Msa0040070:intron 25.0%
! TTATAATCCTTGAGTGTATA+TGG + chr1_1:70036096-70036115 Msa0040070:intron 25.0%
!! AATTTGGAAGCAAAAGTTTT+TGG + chr1_1:70036481-70036500 Msa0040070:intron 25.0%
!! ATTTGGAAGCAAAAGTTTTT+GGG + chr1_1:70036482-70036501 Msa0040070:intron 25.0%
! AAAATTTACCTCTAAACCTT+GGG - chr1_1:70036665-70036684 None:intergenic 25.0%
! TGTGAAAAACAAATGTTAAG+TGG - chr1_1:70036710-70036729 None:intergenic 25.0%
! AGAAATCATTAAACTACTGT+AGG + chr1_1:70036759-70036778 Msa0040070:intron 25.0%
!! ATTTAATTTCCACTATGAAC+TGG - chr1_1:70036798-70036817 None:intergenic 25.0%
! TTCTTTCAAGATGAAACTTA+TGG + chr1_1:70036821-70036840 Msa0040070:intron 25.0%
! AAGATGAAACTTATGGATAA+AGG + chr1_1:70036828-70036847 Msa0040070:intron 25.0%
! TATGATGAATGTATATCTGA+AGG - chr1_1:70036856-70036875 None:intergenic 25.0%
!!! ATTAAGGAAGTATTCAATAG+AGG + chr1_1:70032087-70032106 Msa0040070:CDS 25.0%
!!! TTAAGGAAGTATTCAATAGA+GGG + chr1_1:70032088-70032107 Msa0040070:CDS 25.0%
!! CAAACATGATAATGAAATCA+TGG + chr1_1:70037034-70037053 Msa0040070:CDS 25.0%
! AGTTATTTAGATGTGACAAA+TGG + chr1_1:70037196-70037215 Msa0040070:intron 25.0%
!! TTATTTCTTCTTCAATGTCA+CGG - chr1_1:70032893-70032912 None:intergenic 25.0%
! ATTAATTGCTTGACATATTC+AGG + chr1_1:70038461-70038480 Msa0040070:intron 25.0%
! TAAGATAACCAAGTAAAATC+CGG - chr1_1:70038497-70038516 None:intergenic 25.0%
! GAAAGTAGGTACTAATAAAA+GGG - chr1_1:70038567-70038586 None:intergenic 25.0%
! TGAAAGTAGGTACTAATAAA+AGG - chr1_1:70038568-70038587 None:intergenic 25.0%
!! AAGAACTTTGAAAACAACAT+TGG + chr1_1:70033926-70033945 Msa0040070:CDS 25.0%
!! TTTTCTCTATGCAATTACTT+TGG - chr1_1:70038911-70038930 None:intergenic 25.0%
! ATTTCAACAACCTTTAGCTT+TGG + chr1_1:70031043-70031062 Msa0040070:five_prime_UTR 30.0%
AAAAACTATGCCAAAGCTAA+AGG - chr1_1:70031056-70031075 None:intergenic 30.0%
TTTGCATCATAGACAAAGAA+AGG + chr1_1:70031109-70031128 Msa0040070:five_prime_UTR 30.0%
GCAATAATTGTGTTGAAGAA+TGG + chr1_1:70031131-70031150 Msa0040070:exon 30.0%
TAGGTGATTAGAAACACAAA+AGG + chr1_1:70031332-70031351 Msa0040070:intron 30.0%
ATGCTTGATTGAAGAAAACA+AGG + chr1_1:70031451-70031470 Msa0040070:intron 30.0%
!! AAAACTTCAAAGGAAGCATT+AGG - chr1_1:70031644-70031663 None:intergenic 30.0%
GACTGAGAAAATAAAATGCA+CGG - chr1_1:70031748-70031767 None:intergenic 30.0%
TAATGTTTGTGGATTCTGAT+AGG + chr1_1:70031946-70031965 Msa0040070:intron 30.0%
AATGTTTGTGGATTCTGATA+GGG + chr1_1:70031947-70031966 Msa0040070:intron 30.0%
AATTGAACATCCATCTTCAT+GGG - chr1_1:70032067-70032086 None:intergenic 30.0%
TAATTGAACATCCATCTTCA+TGG - chr1_1:70032068-70032087 None:intergenic 30.0%
!! TAAGGAAGTATTCAATAGAG+GGG + chr1_1:70032089-70032108 Msa0040070:CDS 30.0%
! CATGATAATGAAATCATGGT+TGG + chr1_1:70032150-70032169 Msa0040070:CDS 30.0%
! TAATGAAATCATGGTTGGTA+AGG + chr1_1:70032155-70032174 Msa0040070:CDS 30.0%
AATTCCTTAGATGTGACAAA+TGG + chr1_1:70032308-70032327 Msa0040070:intron 30.0%
ATTCCTTAGATGTGACAAAT+GGG + chr1_1:70032309-70032328 Msa0040070:intron 30.0%
!!! TTACTGATGTCGTTTTAACA+CGG + chr1_1:70032347-70032366 Msa0040070:intron 30.0%
!!! TAGCTAATTGAACTTTTTCG+CGG - chr1_1:70032467-70032486 None:intergenic 30.0%
GTTCAATTAGCTACAAAGTT+TGG + chr1_1:70032474-70032493 Msa0040070:CDS 30.0%
GGAAAATCATTGAAAGCTTA+CGG - chr1_1:70032649-70032668 None:intergenic 30.0%
!!! TCTATTTTCAAGTGTTGGAA+TGG - chr1_1:70032692-70032711 None:intergenic 30.0%
GAAGGAAAGATAAGACATAT+TGG + chr1_1:70032780-70032799 Msa0040070:CDS 30.0%
TATTTCTTCTTCAATGTCAC+GGG - chr1_1:70032892-70032911 None:intergenic 30.0%
AACTAACTGGAGTATAATTG+TGG - chr1_1:70032969-70032988 None:intergenic 30.0%
GCCAAATATATCAAACTAAC+TGG - chr1_1:70032982-70033001 None:intergenic 30.0%
GTGTTATGTTTGCGTTAATT+TGG + chr1_1:70033229-70033248 Msa0040070:intron 30.0%
! GGAGATTTTCCTTATAATGA+TGG + chr1_1:70033250-70033269 Msa0040070:intron 30.0%
ACTTTAATGAGATAAGGTTC+AGG + chr1_1:70033282-70033301 Msa0040070:intron 30.0%
CTATGAACGAATCAATGTAT+TGG + chr1_1:70033464-70033483 Msa0040070:CDS 30.0%
ATATTATTAAGACAGTACCG+GGG - chr1_1:70033566-70033585 None:intergenic 30.0%
CATTATGCACATAACAGATA+AGG - chr1_1:70033741-70033760 None:intergenic 30.0%
CTATCAGTATCAAGGATATA+AGG - chr1_1:70033766-70033785 None:intergenic 30.0%
TTCTCACTATGCAATTACTT+TGG - chr1_1:70034082-70034101 None:intergenic 30.0%
CTAACAAAACACTTATTGCA+GGG - chr1_1:70034113-70034132 None:intergenic 30.0%
TCTAACAAAACACTTATTGC+AGG - chr1_1:70034114-70034133 None:intergenic 30.0%
GTTATTAAGATTAGGCAGTT+AGG + chr1_1:70034246-70034265 Msa0040070:intron 30.0%
AGTTAGGGTGTGTAATAAAT+AGG + chr1_1:70034262-70034281 Msa0040070:intron 30.0%
!!! GTTTTGATGGTTTTGATAAG+AGG + chr1_1:70034466-70034485 Msa0040070:intron 30.0%
CAGATAGAAATACTTGAACA+TGG + chr1_1:70034502-70034521 Msa0040070:intron 30.0%
ATACTTGAACATGGATTTGA+AGG + chr1_1:70034511-70034530 Msa0040070:intron 30.0%
TACTTGAACATGGATTTGAA+GGG + chr1_1:70034512-70034531 Msa0040070:intron 30.0%
GAATAAAGACAAAGACATGA+AGG + chr1_1:70034851-70034870 Msa0040070:intron 30.0%
TCAAGTAACTAAGTAACTTG+TGG - chr1_1:70034895-70034914 None:intergenic 30.0%
GACAATGCATTATATATGCA+AGG - chr1_1:70034972-70034991 None:intergenic 30.0%
TTCTCATTAGTTGTAAAGTG+GGG - chr1_1:70035099-70035118 None:intergenic 30.0%
CATTCTCATTAGTTGTAAAG+TGG - chr1_1:70035101-70035120 None:intergenic 30.0%
TAACATTGTTAAGGCATGTA+TGG - chr1_1:70035197-70035216 None:intergenic 30.0%
ACAATGTTAGTTGAAACTTG+TGG + chr1_1:70035208-70035227 Msa0040070:intron 30.0%
AGTTGAAACTTGTGGATAAA+TGG + chr1_1:70035216-70035235 Msa0040070:intron 30.0%
TTTACTAACGGTAATGTTGA+AGG + chr1_1:70035325-70035344 Msa0040070:intron 30.0%
!! ACCTCTAAAGTGATCTATAT+AGG - chr1_1:70035357-70035376 None:intergenic 30.0%
! TATAGATCACTTTAGAGGTT+AGG + chr1_1:70035358-70035377 Msa0040070:intron 30.0%
GATATGTTCTATATGAAAGC+AGG - chr1_1:70035592-70035611 None:intergenic 30.0%
TATCACATTGCAGCTAATAT+CGG + chr1_1:70035684-70035703 Msa0040070:intron 30.0%
!! AATATCGGTTTAAAAAGCTC+GGG + chr1_1:70035699-70035718 Msa0040070:intron 30.0%
AAGCACATTATGACAGTTAA+AGG - chr1_1:70035794-70035813 None:intergenic 30.0%
! TAAATAAACCCTTTTAGACG+TGG + chr1_1:70036044-70036063 Msa0040070:intron 30.0%
CAAAATGGTAGTTTACTCTT+AGG + chr1_1:70036312-70036331 Msa0040070:intron 30.0%
! TTTTACACCTTAACATGCTT+CGG + chr1_1:70036348-70036367 Msa0040070:intron 30.0%
ATTTAAACCGAAGCATGTTA+AGG - chr1_1:70036358-70036377 None:intergenic 30.0%
! TTTGGAAGCAAAAGTTTTTG+GGG + chr1_1:70036483-70036502 Msa0040070:intron 30.0%
GTATTTCAACTTTGCATCTT+AGG + chr1_1:70036582-70036601 Msa0040070:intron 30.0%
! GCAATAATAGCATTGAAGAA+TGG + chr1_1:70036609-70036628 Msa0040070:CDS 30.0%
GAAAATTTACCTCTAAACCT+TGG - chr1_1:70036666-70036685 None:intergenic 30.0%
ATGTTAAGTGGTTGACAATA+AGG - chr1_1:70036698-70036717 None:intergenic 30.0%
AATCATTAAACTACTGTAGG+AGG + chr1_1:70036762-70036781 Msa0040070:intron 30.0%
AATTAGTAACCAGTTCATAG+TGG + chr1_1:70036786-70036805 Msa0040070:intron 30.0%
AGATGGATGCTCAATTATTA+AGG + chr1_1:70036959-70036978 Msa0040070:CDS 30.0%
!! TAAGGAAGTATTCAATAGAG+GGG + chr1_1:70032089-70032108 Msa0040070:CDS 30.0%
! CATGATAATGAAATCATGGT+TGG + chr1_1:70032150-70032169 Msa0040070:CDS 30.0%
! TAATGAAATCATGGTTGGTA+AGG + chr1_1:70032155-70032174 Msa0040070:CDS 30.0%
! TGAATCTTTTCTTCTGTCAT+AGG + chr1_1:70037231-70037250 Msa0040070:intron 30.0%
GTACTACACTTGTAAATTCT+AGG + chr1_1:70037485-70037504 Msa0040070:intron 30.0%
CTTTAACATTGACCTCTTTA+TGG + chr1_1:70037518-70037537 Msa0040070:intron 30.0%
CTCAAACAACTTGTAAATGA+AGG + chr1_1:70037553-70037572 Msa0040070:CDS 30.0%
! AAAATATATTGGGTTGTCAG+AGG + chr1_1:70037582-70037601 Msa0040070:CDS 30.0%
TATTTCTTCTTCAATGTCAC+GGG - chr1_1:70032892-70032911 None:intergenic 30.0%
AAGAAATAATTCCACTTTGC+AGG + chr1_1:70037695-70037714 Msa0040070:CDS 30.0%
CAATTAATATACCTGCAAAG+TGG - chr1_1:70037709-70037728 None:intergenic 30.0%
!!! ATGTTATTTTTCCTCACTTC+AGG - chr1_1:70038023-70038042 None:intergenic 30.0%
GAGGAAAAATAACATTGATG+AGG + chr1_1:70038028-70038047 Msa0040070:intron 30.0%
TGGTCAAAATAACATTGATG+AGG + chr1_1:70037962-70037981 Msa0040070:intron 30.0%
! AAATTTTCTCCTGTAAACCT+TGG - chr1_1:70038266-70038285 None:intergenic 30.0%
AAGGTTTACAGGAGAAAATT+TGG + chr1_1:70038265-70038284 Msa0040070:CDS 30.0%
TATAAATAAAGGCAGTACCA+GGG - chr1_1:70038406-70038425 None:intergenic 30.0%
ATATAAATAAAGGCAGTACC+AGG - chr1_1:70038407-70038426 None:intergenic 30.0%
ATATTCAGGCAATCTATTTC+CGG + chr1_1:70038475-70038494 Msa0040070:intron 30.0%
! ATCTATTTCCGGATTTTACT+TGG + chr1_1:70038486-70038505 Msa0040070:intron 30.0%
! GTAGAGAAGTTATTTCATTG+AGG - chr1_1:70038987-70039006 None:intergenic 30.0%
TTATTTCAAGCCTATCTTCT+TGG + chr1_1:70039063-70039082 Msa0040070:three_prime_UTR 30.0%
GAAAGTTTACCTCTAAACCA+TGG - chr1_1:70031197-70031216 None:intergenic 35.0%
AGAATGAAAGTGGCAATTTG+GGG - chr1_1:70031224-70031243 None:intergenic 35.0%
GAGAATGAAAGTGGCAATTT+GGG - chr1_1:70031225-70031244 None:intergenic 35.0%
GCTAATAAGGAGAATGAAAG+TGG - chr1_1:70031234-70031253 None:intergenic 35.0%
TGATGAAGTGGTTGCTAATA+AGG - chr1_1:70031247-70031266 None:intergenic 35.0%
ACACAAAAGGCTTACATGAA+TGG + chr1_1:70031345-70031364 Msa0040070:intron 35.0%
GTTGAAGGGACTAAAACAAA+TGG - chr1_1:70031422-70031441 None:intergenic 35.0%
AGCATATGATGACAGTTGAA+GGG - chr1_1:70031436-70031455 None:intergenic 35.0%
AAGCATATGATGACAGTTGA+AGG - chr1_1:70031437-70031456 None:intergenic 35.0%
GTGTGACTAAAATGGATCTA+TGG - chr1_1:70031715-70031734 None:intergenic 35.0%
GAGATCTGATGTATCGAAAA+AGG - chr1_1:70032118-70032137 None:intergenic 35.0%
TTCGATACATCAGATCTCTA+CGG + chr1_1:70032120-70032139 Msa0040070:CDS 35.0%
! TGAGTCTTTTCTTCTGTCAT+AGG + chr1_1:70032425-70032444 Msa0040070:intron 35.0%
!!! AGCTAATTGAACTTTTTCGC+GGG - chr1_1:70032466-70032485 None:intergenic 35.0%
! TTTGGCGTTACTTTATCTGA+TGG + chr1_1:70032492-70032511 Msa0040070:CDS 35.0%
! TTGGCGTTACTTTATCTGAT+GGG + chr1_1:70032493-70032512 Msa0040070:CDS 35.0%
!!! GATGGGGTTTTTAGAGTAAA+AGG + chr1_1:70032510-70032529 Msa0040070:CDS 35.0%
GTATGCATAACTAAGAAGAG+AGG - chr1_1:70032670-70032689 None:intergenic 35.0%
! CTTCGACTTGTTTATGAAGA+TGG + chr1_1:70032734-70032753 Msa0040070:intron 35.0%
TCCTATTACTGCTTTGCAAA+TGG + chr1_1:70032851-70032870 Msa0040070:CDS 35.0%
TCCATTTGCAAAGCAGTAAT+AGG - chr1_1:70032855-70032874 None:intergenic 35.0%
! TGCAAATGGAGTATTCCTTA+TGG + chr1_1:70032865-70032884 Msa0040070:CDS 35.0%
AAGAAATAATTCCACTCTGC+AGG + chr1_1:70032904-70032923 Msa0040070:CDS 35.0%
GTCAGTAGAAAAATACTGCA+GGG - chr1_1:70033371-70033390 None:intergenic 35.0%
TGTCAGTAGAAAAATACTGC+AGG - chr1_1:70033372-70033391 None:intergenic 35.0%
CATGCTAATGCTAATTGAGA+AGG - chr1_1:70033510-70033529 None:intergenic 35.0%
CTTCTCAATTAGCATTAGCA+TGG + chr1_1:70033508-70033527 Msa0040070:CDS 35.0%
GACAGTAACTATCAGTATCA+AGG - chr1_1:70033774-70033793 None:intergenic 35.0%
ACAGTTTGTCGCAATATAGT+TGG + chr1_1:70034038-70034057 Msa0040070:CDS 35.0%
TCACTATGCAATTACTTTGG+CGG - chr1_1:70034079-70034098 None:intergenic 35.0%
AATAGGACAATTGCATGTTG+TGG + chr1_1:70034279-70034298 Msa0040070:intron 35.0%
TTGAATTGCTACCTATCAAC+TGG + chr1_1:70034418-70034437 Msa0040070:intron 35.0%
GTTCTTCATGAGAGAAAAGA+TGG + chr1_1:70034537-70034556 Msa0040070:intron 35.0%
TGAATGCAGAAAAACAGAAG+TGG - chr1_1:70034763-70034782 None:intergenic 35.0%
!! CTTCTGGGACAAATACATTA+TGG + chr1_1:70034817-70034836 Msa0040070:intron 35.0%
!!! TTTTTTTTTTTGGTGGTGGC+CGG + chr1_1:70034931-70034950 Msa0040070:intron 35.0%
TGCATTATATATGCAAGGTC+CGG - chr1_1:70034967-70034986 None:intergenic 35.0%
CTCACTGTGAATATCATAGT+TGG + chr1_1:70035054-70035073 Msa0040070:intron 35.0%
TCATAGAACTGTAGTTGCTA+TGG + chr1_1:70035171-70035190 Msa0040070:intron 35.0%
ATGGTTACAGGTATATCTGA+AGG - chr1_1:70035243-70035262 None:intergenic 35.0%
GCCTATATAGATCACTTTAG+AGG + chr1_1:70035353-70035372 Msa0040070:intron 35.0%
GTAGTGTATGATAGATAGTC+AGG - chr1_1:70035463-70035482 None:intergenic 35.0%
! TATTTCTGATTTCCCAGTCA+AGG + chr1_1:70035483-70035502 Msa0040070:intron 35.0%
!!! GGTGCTGCTACAAATTTTTT+AGG + chr1_1:70035504-70035523 Msa0040070:intron 35.0%
GATGAGAATTGAGATAGTCA+TGG - chr1_1:70035649-70035668 None:intergenic 35.0%
! TTCAGTTGATTGCTTTGTTG+AGG - chr1_1:70035832-70035851 None:intergenic 35.0%
GATGACCTATCATACATTCA+CGG + chr1_1:70036287-70036306 Msa0040070:intron 35.0%
TTGATCCGTGAATGTATGAT+AGG - chr1_1:70036295-70036314 None:intergenic 35.0%
CATACATTCACGGATCAAAA+TGG + chr1_1:70036297-70036316 Msa0040070:intron 35.0%
TAAGTGGTTGACAATAAGGA+AGG - chr1_1:70036694-70036713 None:intergenic 35.0%
ACATTCATCATAGTGCTTTG+TGG + chr1_1:70036864-70036883 Msa0040070:intron 35.0%
AATTGAGCATCCATCTTCAT+GGG - chr1_1:70036955-70036974 None:intergenic 35.0%
TAATTGAGCATCCATCTTCA+TGG - chr1_1:70036956-70036975 None:intergenic 35.0%
GAGATCTGATGTATCGAAAA+AGG - chr1_1:70032118-70032137 None:intergenic 35.0%
TTCGATACATCAGATCTCTA+CGG + chr1_1:70032120-70032139 Msa0040070:CDS 35.0%
! TTTGGCGTTACTTTATCTGA+TGG + chr1_1:70032492-70032511 Msa0040070:CDS 35.0%
! TTGGCGTTACTTTATCTGAT+GGG + chr1_1:70032493-70032512 Msa0040070:CDS 35.0%
! TTATCTGATGGGATGGTTTT+AGG + chr1_1:70037310-70037329 Msa0040070:CDS 35.0%
!! TATCTGATGGGATGGTTTTA+GGG + chr1_1:70037311-70037330 Msa0040070:CDS 35.0%
AAGCTTACAGTGTCTTCAAT+TGG - chr1_1:70037445-70037464 None:intergenic 35.0%
TACAAGTGTAGTACTAGTAG+AGG - chr1_1:70037479-70037498 None:intergenic 35.0%
ATTGACCTCTTTATGGAAGA+TGG + chr1_1:70037525-70037544 Msa0040070:intron 35.0%
AGTTCATCCTATTACTGCTT+TGG + chr1_1:70032845-70032864 Msa0040070:CDS 35.0%
!! TCCTATTACTGCTTTGGAAA+TGG + chr1_1:70037642-70037661 Msa0040070:CDS 35.0%
TCCATTTCCAAAGCAGTAAT+AGG - chr1_1:70037646-70037665 None:intergenic 35.0%
! TGGAAATGGAGTATTCCTTA+TGG + chr1_1:70037656-70037675 Msa0040070:CDS 35.0%
! ATTTTTCCTCACTTCAGGAA+TGG - chr1_1:70038018-70038037 None:intergenic 35.0%
ATTCAAAAGAAAATCCCTGC+AGG - chr1_1:70038207-70038226 None:intergenic 35.0%
TCTTCTTTCCGTAACATAAC+AGG + chr1_1:70038232-70038251 Msa0040070:intron 35.0%
ATGCATAGCCTGTTATGTTA+CGG - chr1_1:70038243-70038262 None:intergenic 35.0%
CTATGAACGAATCAATGACT+TGG + chr1_1:70038304-70038323 Msa0040070:CDS 35.0%
CATGCTAATGCTAATTGAGA+AGG - chr1_1:70033510-70033529 None:intergenic 35.0%
CTTCTCAATTAGCATTAGCA+TGG + chr1_1:70033508-70033527 Msa0040070:CDS 35.0%
!! AGTGATGGATATGTGAAAGT+AGG - chr1_1:70038581-70038600 None:intergenic 35.0%
TATCCATCACTAACTTTGCT+TGG + chr1_1:70038590-70038609 Msa0040070:intron 35.0%
! CGGTATATGGTCAAGATTTT+AGG - chr1_1:70038644-70038663 None:intergenic 35.0%
TCAGTTTAGTAGTCCCTATA+TGG - chr1_1:70038736-70038755 None:intergenic 35.0%
GCTTACACAAGAAGATTTGA+AGG + chr1_1:70038793-70038812 Msa0040070:CDS 35.0%
TCTCTATGCAATTACTTTGG+CGG - chr1_1:70038908-70038927 None:intergenic 35.0%
AGATGAAAGTCCAAGAAGAT+AGG - chr1_1:70039076-70039095 None:intergenic 35.0%
TATCTTCTTGGACTTTCATC+TGG + chr1_1:70039075-70039094 Msa0040070:three_prime_UTR 35.0%
TTGGACTTTCATCTGGTAAA+TGG + chr1_1:70039082-70039101 Msa0040070:three_prime_UTR 35.0%
CAAGTCCCAAGAGTTAAACT+GGG + chr1_1:70031168-70031187 Msa0040070:CDS 40.0%
GGAGAATGAAAGTGGCAATT+TGG - chr1_1:70031226-70031245 None:intergenic 40.0%
GTCTCATCTCTAACTCATTG+TGG - chr1_1:70031828-70031847 None:intergenic 40.0%
TTTGTGAAATGCAGGTGTCT+AGG + chr1_1:70031992-70032011 Msa0040070:intron 40.0%
TTTGGATGTGGAGGATTATC+TGG + chr1_1:70032021-70032040 Msa0040070:CDS 40.0%
CATCCCATTTGTCACATCTA+AGG - chr1_1:70032315-70032334 None:intergenic 40.0%
!!! GCTAATTGAACTTTTTCGCG+GGG - chr1_1:70032465-70032484 None:intergenic 40.0%
! TGGCGTTACTTTATCTGATG+GGG + chr1_1:70032494-70032513 Msa0040070:CDS 40.0%
! TTGGAACTGAAGTGTCAACT+CGG - chr1_1:70032617-70032636 None:intergenic 40.0%
AAGCTTACGGTGTCTTCAAT+TGG - chr1_1:70032636-70032655 None:intergenic 40.0%
! CGACTTGTTTATGAAGATGG+AGG + chr1_1:70032737-70032756 Msa0040070:intron 40.0%
GATGGAGGAGCTTAAAAAAC+TGG + chr1_1:70032752-70032771 Msa0040070:intron 40.0%
GATAAGACATATTGGGCTGT+CGG + chr1_1:70032788-70032807 Msa0040070:CDS 40.0%
TTGCATTCTTGCAGAGAACT+AGG + chr1_1:70033088-70033107 Msa0040070:intron 40.0%
TGCATTCTTGCAGAGAACTA+GGG + chr1_1:70033089-70033108 Msa0040070:intron 40.0%
! CGGCTAGTTACAAGTAATCA+AGG + chr1_1:70033204-70033223 Msa0040070:intron 40.0%
TGGGATGCATATTCTGTTAC+AGG - chr1_1:70033407-70033426 None:intergenic 40.0%
TGTAACAGAATATGCATCCC+AGG + chr1_1:70033406-70033425 Msa0040070:intron 40.0%
AGATTTACTCCAGTGAACCT+GGG - chr1_1:70033426-70033445 None:intergenic 40.0%
AATGACATAATCCCTATCCC+CGG + chr1_1:70033546-70033565 Msa0040070:CDS 40.0%
CTTCACTTTAGTAGTCCCTA+TGG - chr1_1:70033909-70033928 None:intergenic 40.0%
! AAGAGAAAAGGGCACAGTTA+AGG + chr1_1:70034155-70034174 Msa0040070:intron 40.0%
! AGAGAAAAGGGCACAGTTAA+GGG + chr1_1:70034156-70034175 Msa0040070:intron 40.0%
TGCTACCTATCAACTGGTAT+CGG + chr1_1:70034424-70034443 Msa0040070:intron 40.0%
! GACATAGACGTCTTTGTTGT+CGG - chr1_1:70034633-70034652 None:intergenic 40.0%
AAAGACGTCTATGTCAACCA+TGG + chr1_1:70034638-70034657 Msa0040070:intron 40.0%
AAGACGTCTATGTCAACCAT+GGG + chr1_1:70034639-70034658 Msa0040070:intron 40.0%
! TAGGTGTCTTTTCACTGATG+TGG - chr1_1:70034668-70034687 None:intergenic 40.0%
CACCATATGTTCTCACTTCT+GGG + chr1_1:70034802-70034821 Msa0040070:intron 40.0%
CATTATATATGCAAGGTCCG+GGG - chr1_1:70034965-70034984 None:intergenic 40.0%
GCATTATATATGCAAGGTCC+GGG - chr1_1:70034966-70034985 None:intergenic 40.0%
AGCTGGATGAAGTTCTGTTA+TGG - chr1_1:70035148-70035167 None:intergenic 40.0%
CTACAGTTCTATGAAGAAGC+TGG - chr1_1:70035165-70035184 None:intergenic 40.0%
AGCTATTAGCATCATACTCC+TGG - chr1_1:70035384-70035403 None:intergenic 40.0%
GTTATATTCCCTCTGAGCAT+GGG - chr1_1:70035627-70035646 None:intergenic 40.0%
GCTAATTGCCACGTCTAAAA+GGG - chr1_1:70036055-70036074 None:intergenic 40.0%
TGCTAATTGCCACGTCTAAA+AGG - chr1_1:70036056-70036075 None:intergenic 40.0%
TAGGTCATCAGTATAGTCTC+TGG - chr1_1:70036276-70036295 None:intergenic 40.0%
!!! AGCAAAAGTTTTTGGGGTGT+CGG + chr1_1:70036489-70036508 Msa0040070:intron 40.0%
TCAACTTTGCATCTTAGGCA+AGG + chr1_1:70036587-70036606 Msa0040070:intron 40.0%
TTTGGATGTGGAGGATTATC+TGG + chr1_1:70032021-70032040 Msa0040070:CDS 40.0%
!!! TAGCCAATTGGACTTTTTCG+CGG - chr1_1:70037273-70037292 None:intergenic 40.0%
! CGTTACTTTATCTGATGGGA+TGG + chr1_1:70037303-70037322 Msa0040070:CDS 40.0%
!!! ATCTGATGGGATGGTTTTAG+GGG + chr1_1:70037312-70037331 Msa0040070:CDS 40.0%
!!! CTTTTTTGCAGGAAAGTCAG+TGG + chr1_1:70037842-70037861 Msa0040070:CDS 40.0%
TTACTTCCATTCCTGAAGTG+AGG + chr1_1:70038009-70038028 Msa0040070:intron 40.0%
TGAATTAGTTCCATTCCTGC+AGG + chr1_1:70038189-70038208 Msa0040070:intron 40.0%
GAATTAGTTCCATTCCTGCA+GGG + chr1_1:70038190-70038209 Msa0040070:intron 40.0%
AAAGAAAATCCCTGCAGGAA+TGG - chr1_1:70038202-70038221 None:intergenic 40.0%
TGCAGTATCTACACGGTATA+TGG - chr1_1:70038657-70038676 None:intergenic 40.0%
TCATGCTTGCAGTATCTACA+CGG - chr1_1:70038664-70038683 None:intergenic 40.0%
GCAAGTCCCAAGAGTTAAAC+TGG + chr1_1:70031167-70031186 Msa0040070:CDS 45.0%
GGCTACCCAGTTTAACTCTT+GGG - chr1_1:70031176-70031195 None:intergenic 45.0%
TGGCTACCCAGTTTAACTCT+TGG - chr1_1:70031177-70031196 None:intergenic 45.0%
AGAGTTAAACTGGGTAGCCA+TGG + chr1_1:70031177-70031196 Msa0040070:CDS 45.0%
ATAGCTGATCGAGTCGATGA+TGG - chr1_1:70031495-70031514 None:intergenic 45.0%
TGAAATGCAGGTGTCTAGGT+TGG + chr1_1:70031996-70032015 Msa0040070:intron 45.0%
GAAATGCAGGTGTCTAGGTT+GGG + chr1_1:70031997-70032016 Msa0040070:intron 45.0%
! TCTAGGTTGGGATTTGGATG+TGG + chr1_1:70032009-70032028 Msa0040070:CDS 45.0%
ACATCCATCTTCATGGGAGA+GGG - chr1_1:70032061-70032080 None:intergenic 45.0%
AACATCCATCTTCATGGGAG+AGG - chr1_1:70032062-70032081 None:intergenic 45.0%
! AAGGTACCCCTGAATATGTG+AGG + chr1_1:70032529-70032548 Msa0040070:CDS 45.0%
AGGTACCCCTGAATATGTGA+GGG + chr1_1:70032530-70032549 Msa0040070:CDS 45.0%
AGCACTCCCTCACATATTCA+GGG - chr1_1:70032539-70032558 None:intergenic 45.0%
TTCAATGTCACGGGACCATA+AGG - chr1_1:70032883-70032902 None:intergenic 45.0%
CAATTTGTCTACCTGCAGAG+TGG - chr1_1:70032918-70032937 None:intergenic 45.0%
TCTTGCAGAGAACTAGGGAT+TGG + chr1_1:70033094-70033113 Msa0040070:intron 45.0%
ATAGTAGCATATAGCCCCCT+TGG + chr1_1:70033118-70033137 Msa0040070:CDS 45.0%
!!! CGGCTTTTTTGCAGGAAAGT+CGG + chr1_1:70033144-70033163 Msa0040070:CDS 45.0%
!!! CTTTTTTGCAGGAAAGTCGG+TGG + chr1_1:70033147-70033166 Msa0040070:CDS 45.0%
GATAAGGTTCAGGCAAGTTG+TGG + chr1_1:70033292-70033311 Msa0040070:intron 45.0%
TGGAATTACATCTCTGCCGA+GGG + chr1_1:70033312-70033331 Msa0040070:intron 45.0%
CTGCAGGGATAATACTACTC+AGG - chr1_1:70033356-70033375 None:intergenic 45.0%
AATATGCATCCCAGGTTCAC+TGG + chr1_1:70033414-70033433 Msa0040070:CDS 45.0%
CAGATTTACTCCAGTGAACC+TGG - chr1_1:70033427-70033446 None:intergenic 45.0%
CAGGTTCACTGGAGTAAATC+TGG + chr1_1:70033425-70033444 Msa0040070:CDS 45.0%
ATTAGCATGGCTTCTGCATC+AGG + chr1_1:70033521-70033540 Msa0040070:CDS 45.0%
TTAGCATGGCTTCTGCATCA+GGG + chr1_1:70033522-70033541 Msa0040070:CDS 45.0%
! TTAAGACAGTACCGGGGATA+GGG - chr1_1:70033560-70033579 None:intergenic 45.0%
! ATTAAGACAGTACCGGGGAT+AGG - chr1_1:70033561-70033580 None:intergenic 45.0%
TTCCTGTTGCAGAAATCGCT+GGG + chr1_1:70034002-70034021 Msa0040070:CDS 45.0%
TTGCTCCGATACCAGTTGAT+AGG - chr1_1:70034432-70034451 None:intergenic 45.0%
! AACTGGTATCGGAGCAATCA+AGG + chr1_1:70034435-70034454 Msa0040070:intron 45.0%
TATCGGAGCAATCAAGGTCT+CGG + chr1_1:70034441-70034460 Msa0040070:intron 45.0%
!!! CAAGGTCTCGGTTGTTTTGA+TGG + chr1_1:70034453-70034472 Msa0040070:intron 45.0%
! GCAGAGTGTTTGCTTTAGTC+AGG + chr1_1:70034580-70034599 Msa0040070:intron 45.0%
AGGACAACTCGTAGAACGAA+GGG + chr1_1:70034600-70034619 Msa0040070:intron 45.0%
TTCACTGATGTGGATTCCCA+TGG - chr1_1:70034658-70034677 None:intergenic 45.0%
CCAGAAGTGAGAACATATGG+TGG - chr1_1:70034804-70034823 None:intergenic 45.0%
CCACCATATGTTCTCACTTC+TGG + chr1_1:70034801-70034820 Msa0040070:intron 45.0%
GTCCCAGAAGTGAGAACATA+TGG - chr1_1:70034807-70034826 None:intergenic 45.0%
TGAGCTTAGCTCAACTGGTA+AGG - chr1_1:70034994-70035013 None:intergenic 45.0%
! ATCACTTTAGAGGTTAGGCC+AGG + chr1_1:70035363-70035382 Msa0040070:intron 45.0%
AGTGCTAGTGTGTACTTCTC+TGG + chr1_1:70035410-70035429 Msa0040070:intron 45.0%
TTTGTAGCAGCACCTTGACT+GGG - chr1_1:70035498-70035517 None:intergenic 45.0%
ATTTGTAGCAGCACCTTGAC+TGG - chr1_1:70035499-70035518 None:intergenic 45.0%
GGTTATATTCCCTCTGAGCA+TGG - chr1_1:70035628-70035647 None:intergenic 45.0%
TAGACGTGGCAATTAGCATG+TGG + chr1_1:70036058-70036077 Msa0040070:intron 45.0%
GATCGTGCCATATACACTCA+AGG - chr1_1:70036106-70036125 None:intergenic 45.0%
!!! AAAGTTTTTGGGGTGTCGGT+CGG + chr1_1:70036493-70036512 Msa0040070:intron 45.0%
TGGACACTTCAACAGCTCTT+TGG + chr1_1:70036539-70036558 Msa0040070:intron 45.0%
ACAAGTCCCAAGAGTCAAAC+TGG + chr1_1:70036636-70036655 Msa0040070:CDS 45.0%
CAAGTCCCAAGAGTCAAACT+GGG + chr1_1:70036637-70036656 Msa0040070:CDS 45.0%
GTGGTTGACAATAAGGAAGG+AGG - chr1_1:70036691-70036710 None:intergenic 45.0%
CATAGTGCTTTGTGGAATGC+AGG + chr1_1:70036872-70036891 Msa0040070:intron 45.0%
TTTGTGGAATGCAGGTGTCT+AGG + chr1_1:70036880-70036899 Msa0040070:intron 45.0%
!!! AGCCAATTGGACTTTTTCGC+GGG - chr1_1:70037272-70037291 None:intergenic 45.0%
GTCCAATTGGCTACGAAGTT+TGG + chr1_1:70037280-70037299 Msa0040070:CDS 45.0%
!!! GGGATGGTTTTAGGGGTAAA+AGG + chr1_1:70037319-70037338 Msa0040070:CDS 45.0%
! AAGGTACCCCTGAATATGTG+AGG + chr1_1:70032529-70032548 Msa0040070:CDS 45.0%
AGGTACCCCTGAATATGTGA+GGG + chr1_1:70032530-70032549 Msa0040070:CDS 45.0%
AGCACTCCCTCACATATTCA+GGG - chr1_1:70032539-70032558 None:intergenic 45.0%
GACCTCTTTATGGAAGATGG+AGG + chr1_1:70037528-70037547 Msa0040070:intron 45.0%
CTCCTCCATCTTCCATAAAG+AGG - chr1_1:70037533-70037552 None:intergenic 45.0%
TTCAATGTCACGGGACCATA+AGG - chr1_1:70032883-70032902 None:intergenic 45.0%
TTGTGTACTTGCAGAGAGCT+TGG + chr1_1:70037783-70037802 Msa0040070:intron 45.0%
! AGAGCTTGGCATTGGAATTG+TGG + chr1_1:70037797-70037816 Msa0040070:CDS 45.0%
TTTGTCTAGTCAGAGCTTGC+TGG + chr1_1:70037872-70037891 Msa0040070:CDS 45.0%
CATAACAGGCTATGCATCCA+AGG + chr1_1:70038246-70038265 Msa0040070:intron 45.0%
GCTATGCATCCAAGGTTTAC+AGG + chr1_1:70038254-70038273 Msa0040070:CDS 45.0%
ATTAGCATGGCTTCTGCATC+AGG + chr1_1:70033521-70033540 Msa0040070:CDS 45.0%
TTAGCATGGCTTCTGCATCA+GGG + chr1_1:70033522-70033541 Msa0040070:CDS 45.0%
AATGGCATAATCCCTATCCC+TGG + chr1_1:70038386-70038405 Msa0040070:CDS 45.0%
TAAAGGCAGTACCAGGGATA+GGG - chr1_1:70038400-70038419 None:intergenic 45.0%
ATAAAGGCAGTACCAGGGAT+AGG - chr1_1:70038401-70038420 None:intergenic 45.0%
GTGCCAAGCAAAGTTAGTGA+TGG - chr1_1:70038596-70038615 None:intergenic 45.0%
TTCCCGTTGAGGAAATTGCT+GGG + chr1_1:70038831-70038850 Msa0040070:CDS 45.0%
AATTACGATGCCTCCCTAGT+AGG + chr1_1:70039118-70039137 Msa0040070:three_prime_UTR 45.0%
ACTGGGTAGCCATGGTTTAG+AGG + chr1_1:70031185-70031204 Msa0040070:CDS 50.0%
! CAGGTGTCTAGGTTGGGATT+TGG + chr1_1:70032003-70032022 Msa0040070:intron 50.0%
AGGTTGGGATTTGGATGTGG+AGG + chr1_1:70032012-70032031 Msa0040070:CDS 50.0%
CATCCATCTTCATGGGAGAG+GGG - chr1_1:70032060-70032079 None:intergenic 50.0%
GCACTCCCTCACATATTCAG+GGG - chr1_1:70032538-70032557 None:intergenic 50.0%
CAGCACTCCCTCACATATTC+AGG - chr1_1:70032540-70032559 None:intergenic 50.0%
TGCAAAAAAGCCGCAGCCAA+GGG - chr1_1:70033137-70033156 None:intergenic 50.0%
TTTGCCTAGTCAGAGCGTAC+TGG + chr1_1:70033177-70033196 Msa0040070:CDS 50.0%
CATACCAGTACGCTCTGACT+AGG - chr1_1:70033184-70033203 None:intergenic 50.0%
! AGTCAGAGCGTACTGGTATG+CGG + chr1_1:70033184-70033203 Msa0040070:intron 50.0%
GTGGAATTACATCTCTGCCG+AGG + chr1_1:70033311-70033330 Msa0040070:intron 50.0%
GTTCCTGTTGCAGAAATCGC+TGG + chr1_1:70034001-70034020 Msa0040070:CDS 50.0%
TTCCCAGCGATTTCTGCAAC+AGG - chr1_1:70034007-70034026 None:intergenic 50.0%
! GAAAAGGGCACAGTTAAGGG+TGG + chr1_1:70034159-70034178 Msa0040070:intron 50.0%
GGCACAGTTAAGGGTGGTTA+GGG + chr1_1:70034165-70034184 Msa0040070:intron 50.0%
GCACAGTTAAGGGTGGTTAG+GGG + chr1_1:70034166-70034185 Msa0040070:intron 50.0%
CAGGACAACTCGTAGAACGA+AGG + chr1_1:70034599-70034618 Msa0040070:intron 50.0%
AAGGTCCGGGGTTCAAATTC+CGG - chr1_1:70034953-70034972 None:intergenic 50.0%
GGGTACCCAGTTTGACTCTT+GGG - chr1_1:70036645-70036664 None:intergenic 50.0%
TGGGTACCCAGTTTGACTCT+TGG - chr1_1:70036646-70036665 None:intergenic 50.0%
AGAGTCAAACTGGGTACCCA+AGG + chr1_1:70036646-70036665 Msa0040070:CDS 50.0%
ACTGGGTACCCAAGGTTTAG+AGG + chr1_1:70036654-70036673 Msa0040070:intron 50.0%
TCTAGGCTGGGATTTGGATG+TGG + chr1_1:70036897-70036916 Msa0040070:CDS 50.0%
CATCCATCTTCATGGGAGAG+GGG - chr1_1:70032060-70032079 None:intergenic 50.0%
GCATCCATCTTCATGGGAGA+GGG - chr1_1:70036949-70036968 None:intergenic 50.0%
AGCATCCATCTTCATGGGAG+AGG - chr1_1:70036950-70036969 None:intergenic 50.0%
TCCCCGCGAAAAAGTCCAAT+TGG + chr1_1:70037267-70037286 Msa0040070:CDS 50.0%
!!! GCCAATTGGACTTTTTCGCG+GGG - chr1_1:70037271-70037290 None:intergenic 50.0%
CGCCAAACTTCGTAGCCAAT+TGG - chr1_1:70037285-70037304 None:intergenic 50.0%
GCACTCCCTCACATATTCAG+GGG - chr1_1:70032538-70032557 None:intergenic 50.0%
CAGCACTCCCTCACATATTC+AGG - chr1_1:70032540-70032559 None:intergenic 50.0%
! GCTGTGAAGCTAGTCTCAAG+CGG + chr1_1:70037365-70037384 Msa0040070:CDS 50.0%
ACTTGCAGAGAGCTTGGCAT+TGG + chr1_1:70037789-70037808 Msa0040070:intron 50.0%
TGCAAAAAAGCCGCGACCAA+GGG - chr1_1:70037832-70037851 None:intergenic 50.0%
TGCAGGAAAGTCAGTGGTAG+AGG + chr1_1:70037848-70037867 Msa0040070:CDS 50.0%
TGGCTTCTGCATCAGGGAAA+TGG + chr1_1:70033528-70033547 Msa0040070:CDS 50.0%
!! TTCTGAAGCAGTTCCCGTTG+AGG + chr1_1:70038820-70038839 Msa0040070:CDS 50.0%
GTTCCCGTTGAGGAAATTGC+TGG + chr1_1:70038830-70038849 Msa0040070:CDS 50.0%
TCCCGTTGAGGAAATTGCTG+GGG + chr1_1:70038832-70038851 Msa0040070:CDS 50.0%
TCCCCAGCAATTTCCTCAAC+GGG - chr1_1:70038836-70038855 None:intergenic 50.0%
CTCCCCAGCAATTTCCTCAA+CGG - chr1_1:70038837-70038856 None:intergenic 50.0%
GCTGTGAAGCGAGTCTCAAG+CGG + chr1_1:70032556-70032575 Msa0040070:CDS 55.0%
CAAAAAAGCCGCAGCCAAGG+GGG - chr1_1:70033135-70033154 None:intergenic 55.0%
GCAAAAAAGCCGCAGCCAAG+GGG - chr1_1:70033136-70033155 None:intergenic 55.0%
CTGCAAAAAAGCCGCAGCCA+AGG - chr1_1:70033138-70033157 None:intergenic 55.0%
!!! CTTGGCTGCGGCTTTTTTGC+AGG + chr1_1:70033136-70033155 Msa0040070:CDS 55.0%
TGCAGGAAAGTCGGTGGTAG+AGG + chr1_1:70033153-70033172 Msa0040070:CDS 55.0%
GGGCACAGTTAAGGGTGGTT+AGG + chr1_1:70034164-70034183 Msa0040070:intron 55.0%
CCTCGTGAGCTTAGCTCAAC+TGG - chr1_1:70034999-70035018 None:intergenic 55.0%
CCAGTTGAGCTAAGCTCACG+AGG + chr1_1:70034996-70035015 Msa0040070:intron 55.0%
TTTGGCAAGCCCATGCTCAG+AGG + chr1_1:70035615-70035634 Msa0040070:intron 55.0%
TTGGCAAGCCCATGCTCAGA+GGG + chr1_1:70035616-70035635 Msa0040070:intron 55.0%
!! TGGCAGTAGTGCTGACTGAG+TGG + chr1_1:70036519-70036538 Msa0040070:intron 55.0%
TGGAATGCAGGTGTCTAGGC+TGG + chr1_1:70036884-70036903 Msa0040070:intron 55.0%
GGAATGCAGGTGTCTAGGCT+GGG + chr1_1:70036885-70036904 Msa0040070:intron 55.0%
CAGGTGTCTAGGCTGGGATT+TGG + chr1_1:70036891-70036910 Msa0040070:intron 55.0%
AGGCTGGGATTTGGATGTGG+AGG + chr1_1:70036900-70036919 Msa0040070:CDS 55.0%
ATTGTGGCATACAGCCCCCT+TGG + chr1_1:70037813-70037832 Msa0040070:CDS 55.0%
CAAAAAAGCCGCGACCAAGG+GGG - chr1_1:70037830-70037849 None:intergenic 55.0%
GCAAAAAAGCCGCGACCAAG+GGG - chr1_1:70037831-70037850 None:intergenic 55.0%
CTGCAAAAAAGCCGCGACCA+AGG - chr1_1:70037833-70037852 None:intergenic 55.0%
!!! CTTGGTCGCGGCTTTTTTGC+AGG + chr1_1:70037831-70037850 Msa0040070:CDS 55.0%
GCTCCCCTCTCCCATGAAGA+TGG + chr1_1:70032054-70032073 Msa0040070:CDS 60.0%
GAAGCGAGTCTCAAGCGGCT+TGG + chr1_1:70032561-70032580 Msa0040070:CDS 60.0%
ATTGGGCTGTCGGACGCTAG+TGG + chr1_1:70032798-70032817 Msa0040070:CDS 60.0%
GCATATAGCCCCCTTGGCTG+CGG + chr1_1:70033124-70033143 Msa0040070:CDS 60.0%
GGTGGCCGGAATTTGAACCC+CGG + chr1_1:70034945-70034964 Msa0040070:intron 60.0%
!! TTTGGGGTGTCGGTCGGTAC+TGG + chr1_1:70036499-70036518 Msa0040070:intron 60.0%
GCTCCCCTCTCCCATGAAGA+TGG + chr1_1:70032054-70032073 Msa0040070:CDS 60.0%
GCATACAGCCCCCTTGGTCG+CGG + chr1_1:70037819-70037838 Msa0040070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70031029 70039142 70031029 ID=Msa0040070;Name=Msa0040070
chr1_1 mRNA 70031029 70039142 70031029 ID=Msa0040070-mRNA-1;Parent=Msa0040070;Name=Msa0040070-mRNA-1;_AED=0.28;_eAED=0.28;_QI=121|0.84|0.85|1|1|1|14|226|687
chr1_1 exon 70031029 70031206 70031029 ID=Msa0040070-mRNA-1:exon:23015;Parent=Msa0040070-mRNA-1
chr1_1 exon 70032006 70032176 70032006 ID=Msa0040070-mRNA-1:exon:23016;Parent=Msa0040070-mRNA-1
chr1_1 exon 70032447 70032647 70032447 ID=Msa0040070-mRNA-1:exon:23017;Parent=Msa0040070-mRNA-1
chr1_1 exon 70032753 70032925 70032753 ID=Msa0040070-mRNA-1:exon:23018;Parent=Msa0040070-mRNA-1
chr1_1 exon 70033102 70033198 70033102 ID=Msa0040070-mRNA-1:exon:23019;Parent=Msa0040070-mRNA-1
chr1_1 exon 70033414 70033567 70033414 ID=Msa0040070-mRNA-1:exon:23020;Parent=Msa0040070-mRNA-1
chr1_1 exon 70033912 70034083 70033912 ID=Msa0040070-mRNA-1:exon:23021;Parent=Msa0040070-mRNA-1
chr1_1 exon 70036604 70036667 70036604 ID=Msa0040070-mRNA-1:exon:23022;Parent=Msa0040070-mRNA-1
chr1_1 exon 70036894 70037064 70036894 ID=Msa0040070-mRNA-1:exon:23023;Parent=Msa0040070-mRNA-1
chr1_1 exon 70037253 70037456 70037253 ID=Msa0040070-mRNA-1:exon:23024;Parent=Msa0040070-mRNA-1
chr1_1 exon 70037544 70037716 70037544 ID=Msa0040070-mRNA-1:exon:23025;Parent=Msa0040070-mRNA-1
chr1_1 exon 70037797 70037893 70037797 ID=Msa0040070-mRNA-1:exon:23026;Parent=Msa0040070-mRNA-1
chr1_1 exon 70038254 70038407 70038254 ID=Msa0040070-mRNA-1:exon:23027;Parent=Msa0040070-mRNA-1
chr1_1 exon 70038741 70039142 70038741 ID=Msa0040070-mRNA-1:exon:23028;Parent=Msa0040070-mRNA-1
chr1_1 five_prime_UTR 70031029 70031149 70031029 ID=Msa0040070-mRNA-1:five_prime_utr;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70031150 70031206 70031150 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70032006 70032176 70032006 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70032447 70032647 70032447 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70032753 70032925 70032753 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70033102 70033198 70033102 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70033414 70033567 70033414 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70033912 70034083 70033912 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70036604 70036667 70036604 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70036894 70037064 70036894 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70037253 70037456 70037253 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70037544 70037716 70037544 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70037797 70037893 70037797 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70038254 70038407 70038254 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 CDS 70038741 70038916 70038741 ID=Msa0040070-mRNA-1:cds;Parent=Msa0040070-mRNA-1
chr1_1 three_prime_UTR 70038917 70039142 70038917 ID=Msa0040070-mRNA-1:three_prime_utr;Parent=Msa0040070-mRNA-1
Gene Sequence

>Msa0040070

ATGGATAAGACTGAGATGCAAGTCCCAAGAGTTAAACTGGGTAGCCATGGTTTAGAGGTGTCTAGGTTGGGATTTGGATGTGGAGGATTATCTGGAATTTTTAATGCTCCCCTCTCCCATGAAGATGGATGTTCAATTATTAAGGAAGTATTCAATAGAGGGGTTACCTTTTTCGATACATCAGATCTCTACGGAGACAATCATGATAATGAAATCATGGTTGGTAAGGCATTAAAAGAACTTCCCCGCGAAAAAGTTCAATTAGCTACAAAGTTTGGCGTTACTTTATCTGATGGGGTTTTTAGAGTAAAAGGTACCCCTGAATATGTGAGGGAGTGCTGTGAAGCGAGTCTCAAGCGGCTTGGTGTCAATTATATTGACTTATACTATCAACACCGAGTTGACACTTCAGTTCCAATTGAAGACACCATGGAGGAGCTTAAAAAACTGGTAAATGAAGGAAAGATAAGACATATTGGGCTGTCGGACGCTAGTGGCGACACTATAAAGAGAGCACACGCAGTTCATCCTATTACTGCTTTGCAAATGGAGTATTCCTTATGGTCCCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGAGAACTAGGGATTGGAATAGTAGCATATAGCCCCCTTGGCTGCGGCTTTTTTGCAGGAAAGTCGGTGGTAGAGGCTTTGCCTAGTCAGAGCGTACTGAATATGCATCCCAGGTTCACTGGAGTAAATCTGGAAAAGAACAAGATAATCTATGAACGAATCAATGTATTGGCTTCAAAGCATGCATGCACTCCTTCTCAATTAGCATTAGCATGGCTTCTGCATCAGGGAAATGACATAATCCCTATCCCCGGGACTACTAAAGTGAAGAACTTTGAAAACAACATTGGATCTCTGATTTTAAAGCTTACAGAAGAAGATTTGAAAGAAATTTCTGATGCAGTTCCTGTTGCAGAAATCGCTGGGAATCTAGAAAATCACAGTTTGTCGCAATATAGTTGGAAGTTTGCAACTACGCCGCCAAAGCAAGGCAATAATAGCATTGAAGAATGGAGATACAAGTCCCAAGAGTCAAACTGGGTACCCAAGGTGTCTAGGCTGGGATTTGGATGTGGAGGATTATCTGGAATTTATAATGCTCCCCTCTCCCATGAAGATGGATGCTCAATTATTAAGGAAGTATTCAATAGAGGGGTTACCTTTTTCGATACATCAGATCTCTACGGACACAAACATGATAATGAAATCATGGTTGGTAAGGCATTAAAAGAACTTCCCCGCGAAAAAGTCCAATTGGCTACGAAGTTTGGCGTTACTTTATCTGATGGGATGGTTTTAGGGGTAAAAGGTACCCCTGAATATGTGAGGGAGTGCTGTGAAGCTAGTCTCAAGCGGCTTGATGTCAAGTATATTGATTTATACTATCAACACAGAGTTGACACTTCAATTCCAATTGAAGACACTATGGAGGAGCTCAAACAACTTGTAAATGAAGGAAAGATAAAATATATTGGGTTGTCAGAGGCTAATGCTGACACTATAAAGAGAGCACATGCAGTTCATCCTATTACTGCTTTGGAAATGGAGTATTCCTTATGGTCCCGTGACATTGAAGAAGAAATAATTCCACTTTGCAGAGAGCTTGGCATTGGAATTGTGGCATACAGCCCCCTTGGTCGCGGCTTTTTTGCAGGAAAGTCAGTGGTAGAGGCTTTGTCTAGTCAGAGCTTGCTGGCTATGCATCCAAGGTTTACAGGAGAAAATTTGGAAAAGAACAAGCTTTTCTATGAACGAATCAATGACTTGGCTTCAAAGCATGCATGTACTCCTTCTCAATTAGCATTAGCATGGCTTCTGCATCAGGGAAATGGCATAATCCCTATCCCTGGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGAATGTGAAGCTTACACAAGAAGATTTGAAGGAAATTTCTGAAGCAGTTCCCGTTGAGGAAATTGCTGGGGAGCGAGAATATGATAGTATATCACAATATCTTTGGAAATTTGCAACTACGCCGCCAAAGTAA
Protein sequence

>Msa0040070

MDKTEMQVPRVKLGSHGLEVSRLGFGCGGLSGIFNAPLSHEDGCSIIKEVFNRGVTFFDTSDLYGDNHDNEIMVGKALKELPREKVQLATKFGVTLSDGVFRVKGTPEYVRECCEASLKRLGVNYIDLYYQHRVDTSVPIEDTMEELKKLVNEGKIRHIGLSDASGDTIKRAHAVHPITALQMEYSLWSRDIEEEIIPLCRELGIGIVAYSPLGCGFFAGKSVVEALPSQSVLNMHPRFTGVNLEKNKIIYERINVLASKHACTPSQLALAWLLHQGNDIIPIPGTTKVKNFENNIGSLILKLTEEDLKEISDAVPVAEIAGNLENHSLSQYSWKFATTPPKQGNNSIEEWRYKSQESNWVPKVSRLGFGCGGLSGIYNAPLSHEDGCSIIKEVFNRGVTFFDTSDLYGHKHDNEIMVGKALKELPREKVQLATKFGVTLSDGMVLGVKGTPEYVRECCEASLKRLDVKYIDLYYQHRVDTSIPIEDTMEELKQLVNEGKIKYIGLSEANADTIKRAHAVHPITALEMEYSLWSRDIEEEIIPLCRELGIGIVAYSPLGRGFFAGKSVVEALSSQSLLAMHPRFTGENLEKNKLFYERINDLASKHACTPSQLALAWLLHQGNGIIPIPGTTKLKNFENNIGSLNVKLTQEDLKEISEAVPVEEIAGEREYDSISQYLWKFATTPPK*