Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180650 | KAG4984263.1 | 81.624 | 702 | 114 | 7 | 1 | 687 | 1 | 702 | 0.0 | 1170 |
| Msa0180650 | KAG4984263.1 | 84.709 | 327 | 47 | 2 | 20 | 343 | 377 | 703 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180650 | sp|Q3L181|PERR_RAUSE | 67.164 | 335 | 109 | 1 | 8 | 341 | 1 | 335 | 1.45e-165 | 481 |
| Msa0180650 | sp|Q3L181|PERR_RAUSE | 66.049 | 324 | 110 | 0 | 363 | 686 | 12 | 335 | 5.70e-158 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180650 | A0A7J6DLU6 | 71.655 | 695 | 177 | 5 | 5 | 687 | 6 | 692 | 0.0 | 1045 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018160 | Msa0180650 | 0.828072 | 1.101344e-54 | -8.615850e-47 |
| Msa0025160 | Msa0180650 | 0.807472 | 4.972294e-50 | -8.615850e-47 |
| Msa0025580 | Msa0180650 | 0.800158 | 1.643016e-48 | -8.615850e-47 |
| Msa0027280 | Msa0180650 | 0.809695 | 1.666598e-50 | -8.615850e-47 |
| Msa0034210 | Msa0180650 | 0.827749 | 1.317267e-54 | -8.615850e-47 |
| Msa0036870 | Msa0180650 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
| Msa0040070 | Msa0180650 | 0.924914 | 3.723281e-90 | -8.615850e-47 |
| Msa0052260 | Msa0180650 | 0.813621 | 2.333594e-51 | -8.615850e-47 |
| Msa0056180 | Msa0180650 | 0.816902 | 4.352180e-52 | -8.615850e-47 |
| Msa0071860 | Msa0180650 | 0.803609 | 3.212047e-49 | -8.615850e-47 |
| Msa0087760 | Msa0180650 | 0.866679 | 2.390365e-65 | -8.615850e-47 |
| Msa0097260 | Msa0180650 | 0.808276 | 3.353972e-50 | -8.615850e-47 |
| Msa0121330 | Msa0180650 | 0.824874 | 6.372951e-54 | -8.615850e-47 |
| Msa0125210 | Msa0180650 | 0.819936 | 8.937669e-53 | -8.615850e-47 |
| Msa0128310 | Msa0180650 | 0.838471 | 2.820094e-57 | -8.615850e-47 |
| Msa0136650 | Msa0180650 | 0.818869 | 1.565173e-52 | -8.615850e-47 |
| Msa0146040 | Msa0180650 | 0.814927 | 1.200513e-51 | -8.615850e-47 |
| Msa0174440 | Msa0180650 | 0.837713 | 4.419613e-57 | -8.615850e-47 |
| Msa0180650 | Msa0200050 | 0.809242 | 2.084436e-50 | -8.615850e-47 |
| Msa0180650 | Msa0230800 | 0.807581 | 4.713367e-50 | -8.615850e-47 |
| Msa0180650 | Msa0349710 | 0.811801 | 5.838688e-51 | -8.615850e-47 |
| Msa0180650 | Msa0371190 | 0.812399 | 4.323832e-51 | -8.615850e-47 |
| Msa0180650 | Msa0380620 | 0.821182 | 4.624892e-53 | -8.615850e-47 |
| Msa0180650 | Msa0419700 | 0.815622 | 8.413378e-52 | -8.615850e-47 |
| Msa0180650 | Msa0422050 | 0.817523 | 3.155355e-52 | -8.615850e-47 |
| Msa0180650 | Msa0430260 | 0.815814 | 7.621237e-52 | -8.615850e-47 |
| Msa0180650 | Msa0435210 | 0.830438 | 2.936632e-55 | -8.615850e-47 |
| Msa0180650 | Msa0444070 | 0.810624 | 1.050653e-50 | -8.615850e-47 |
| Msa0180650 | Msa0450160 | 0.809775 | 1.601299e-50 | -8.615850e-47 |
| Msa0180650 | Msa0472950 | 0.806699 | 7.247610e-50 | -8.615850e-47 |
| Msa0180650 | Msa0479320 | 0.832379 | 9.777139e-56 | -8.615850e-47 |
| Msa0180650 | Msa0483910 | 0.811267 | 7.627154e-51 | -8.615850e-47 |
| Msa0180650 | Msa0528570 | 0.812204 | 4.769654e-51 | -8.615850e-47 |
| Msa0180650 | Msa0543660 | 0.804966 | 1.676177e-49 | -8.615850e-47 |
| Msa0180650 | Msa0549370 | 0.824695 | 7.021989e-54 | -8.615850e-47 |
| Msa0180650 | Msa0563940 | 0.831758 | 1.391828e-55 | -8.615850e-47 |
| Msa0180650 | Msa0567170 | 0.802055 | 6.728079e-49 | -8.615850e-47 |
| Msa0180650 | Msa0584420 | 0.808778 | 2.619892e-50 | -8.615850e-47 |
| Msa0180650 | Msa0698730 | 0.800420 | 1.453198e-48 | -8.615850e-47 |
| Msa0180650 | Msa0700460 | 0.827829 | 1.260169e-54 | -8.615850e-47 |
| Msa0180650 | Msa0735780 | 0.802251 | 6.130826e-49 | -8.615850e-47 |
| Msa0180650 | Msa0738700 | 0.804765 | 1.846550e-49 | -8.615850e-47 |
| Msa0180650 | Msa0981320 | 0.806319 | 8.713049e-50 | -8.615850e-47 |
| Msa0180650 | Msa1003800 | 0.808382 | 3.182755e-50 | -8.615850e-47 |
| Msa0180650 | Msa1009950 | 0.816909 | 4.337127e-52 | -8.615850e-47 |
| Msa0180650 | Msa1042160 | 0.823268 | 1.518123e-53 | -8.615850e-47 |
| Msa0180650 | Msa1042190 | 0.829043 | 6.418735e-55 | -8.615850e-47 |
| Msa0180650 | Msa1051420 | 0.812015 | 5.243894e-51 | -8.615850e-47 |
| Msa0180650 | Msa1081690 | 0.806979 | 6.322604e-50 | -8.615850e-47 |
| Msa0180650 | Msa1116220 | 0.801258 | 9.802895e-49 | -8.615850e-47 |
| Msa0180650 | Msa1117920 | 0.800281 | 1.551111e-48 | -8.615850e-47 |
| Msa0180650 | Msa1161680 | 0.804348 | 2.255681e-49 | -8.615850e-47 |
| Msa0180650 | Msa1167470 | 0.833675 | 4.653364e-56 | -8.615850e-47 |
| Msa0180650 | Msa1216110 | 0.837180 | 6.053139e-57 | -8.615850e-47 |
| Msa0180650 | Msa1240770 | 0.806870 | 6.668094e-50 | -8.615850e-47 |
| Msa0180650 | Msa1268630 | 0.813095 | 3.044655e-51 | -8.615850e-47 |
| Msa0180650 | Msa1308820 | 0.806406 | 8.353194e-50 | -8.615850e-47 |
| Msa0180650 | Msa1315130 | 0.824551 | 7.590653e-54 | -8.615850e-47 |
| Msa0180650 | Msa1315160 | 0.846400 | 2.223846e-59 | -8.615850e-47 |
| Msa0180650 | Msa1321340 | 0.819898 | 9.120636e-53 | -8.615850e-47 |
| Msa0180650 | Msa1343180 | 0.819995 | 8.665629e-53 | -8.615850e-47 |
| Msa0180650 | Msa1384460 | 0.823262 | 1.522935e-53 | -8.615850e-47 |
| Msa0180650 | Msa1400010 | 0.804165 | 2.462705e-49 | -8.615850e-47 |
| Msa0180650 | Msa1415540 | 0.810403 | 1.173108e-50 | -8.615850e-47 |
| Msa0180650 | Msa1452140 | 0.828708 | 7.738219e-55 | -8.615850e-47 |
| Msa0180650 | Msa1454140 | 0.809362 | 1.964277e-50 | -8.615850e-47 |
| Msa0180650 | Msa1462490 | 0.810990 | 8.757731e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180650 | MtrunA17_Chr1g0204651 | 98.462 | 325 | 5 | 0 | 363 | 687 | 16 | 340 | 0.0 | 662 |
| Msa0180650 | MtrunA17_Chr1g0204651 | 88.791 | 339 | 37 | 1 | 5 | 342 | 2 | 340 | 0.0 | 617 |
| Msa0180650 | MtrunA17_Chr7g0274061 | 65.385 | 338 | 113 | 1 | 9 | 342 | 12 | 349 | 5.62e-164 | 474 |
| Msa0180650 | MtrunA17_Chr7g0274061 | 65.854 | 328 | 109 | 1 | 363 | 687 | 22 | 349 | 9.99e-162 | 469 |
| Msa0180650 | MtrunA17_Chr7g0274041 | 63.127 | 339 | 122 | 3 | 6 | 342 | 5 | 342 | 1.27e-158 | 461 |
| Msa0180650 | MtrunA17_Chr7g0274041 | 62.270 | 326 | 121 | 2 | 363 | 687 | 18 | 342 | 6.58e-153 | 446 |
| Msa0180650 | MtrunA17_Chr7g0274071 | 63.235 | 340 | 122 | 2 | 3 | 342 | 9 | 345 | 2.86e-158 | 460 |
| Msa0180650 | MtrunA17_Chr7g0274071 | 63.692 | 325 | 115 | 2 | 363 | 687 | 24 | 345 | 1.88e-154 | 450 |
| Msa0180650 | MtrunA17_Chr7g0222171 | 57.910 | 335 | 134 | 3 | 8 | 341 | 4 | 332 | 2.82e-132 | 393 |
| Msa0180650 | MtrunA17_Chr7g0222171 | 58.462 | 325 | 127 | 5 | 363 | 686 | 15 | 332 | 9.94e-127 | 379 |
| Msa0180650 | MtrunA17_Chr7g0221791 | 56.805 | 338 | 133 | 5 | 8 | 341 | 4 | 332 | 1.43e-127 | 381 |
| Msa0180650 | MtrunA17_Chr7g0221791 | 57.538 | 325 | 130 | 6 | 363 | 686 | 15 | 332 | 6.74e-123 | 369 |
| Msa0180650 | MtrunA17_Chr7g0222121 | 51.613 | 372 | 133 | 6 | 8 | 341 | 4 | 366 | 8.64e-120 | 362 |
| Msa0180650 | MtrunA17_Chr7g0222121 | 52.089 | 359 | 130 | 7 | 363 | 686 | 15 | 366 | 3.30e-115 | 350 |
| Msa0180650 | MtrunA17_Chr7g0274081 | 63.265 | 196 | 70 | 1 | 494 | 687 | 2 | 197 | 2.83e-89 | 277 |
| Msa0180650 | MtrunA17_Chr7g0274081 | 60.714 | 196 | 75 | 1 | 149 | 342 | 2 | 197 | 1.89e-82 | 259 |
| Msa0180650 | MtrunA17_Chr7g0221781 | 54.264 | 129 | 57 | 2 | 8 | 136 | 4 | 130 | 4.06e-38 | 138 |
| Msa0180650 | MtrunA17_Chr7g0221781 | 52.941 | 119 | 53 | 3 | 363 | 481 | 15 | 130 | 6.03e-31 | 118 |
| Msa0180650 | MtrunA17_Chr7g0222141 | 81.818 | 66 | 12 | 0 | 499 | 564 | 65 | 130 | 1.99e-32 | 123 |
| Msa0180650 | MtrunA17_Chr7g0222141 | 57.732 | 97 | 32 | 1 | 123 | 219 | 43 | 130 | 4.82e-30 | 116 |
| Msa0180650 | MtrunA17_Chr7g0274091 | 57.292 | 96 | 40 | 1 | 3 | 98 | 5 | 99 | 2.47e-32 | 121 |
| Msa0180650 | MtrunA17_Chr7g0274091 | 59.091 | 88 | 34 | 1 | 363 | 448 | 20 | 107 | 3.58e-28 | 109 |
| Msa0180650 | MtrunA17_Chr7g0221771 | 50.909 | 110 | 50 | 2 | 577 | 686 | 1 | 106 | 7.01e-32 | 119 |
| Msa0180650 | MtrunA17_Chr7g0221771 | 50.476 | 105 | 48 | 1 | 237 | 341 | 6 | 106 | 1.47e-30 | 115 |
| Msa0180650 | MtrunA17_Chr7g0222151 | 60.526 | 76 | 30 | 0 | 577 | 652 | 1 | 76 | 1.17e-27 | 106 |
| Msa0180650 | MtrunA17_Chr7g0222151 | 60.526 | 76 | 30 | 0 | 232 | 307 | 1 | 76 | 2.23e-26 | 102 |
| Msa0180650 | MtrunA17_Chr1g0169691 | 28.527 | 319 | 204 | 9 | 13 | 315 | 6 | 316 | 2.18e-26 | 110 |
| Msa0180650 | MtrunA17_Chr1g0169691 | 29.102 | 323 | 186 | 11 | 363 | 660 | 12 | 316 | 1.23e-24 | 105 |
| Msa0180650 | MtrunA17_Chr3g0095421 | 29.321 | 324 | 195 | 12 | 10 | 311 | 37 | 348 | 3.36e-26 | 110 |
| Msa0180650 | MtrunA17_Chr3g0095421 | 28.931 | 318 | 187 | 11 | 363 | 656 | 46 | 348 | 1.75e-24 | 105 |
| Msa0180650 | MtrunA17_Chr3g0127491 | 28.571 | 336 | 192 | 16 | 7 | 315 | 35 | 349 | 1.65e-24 | 105 |
| Msa0180650 | MtrunA17_Chr3g0127491 | 26.667 | 360 | 212 | 14 | 326 | 660 | 17 | 349 | 2.64e-23 | 102 |
| Msa0180650 | MtrunA17_Chr8g0380261 | 25.641 | 351 | 208 | 11 | 8 | 312 | 40 | 383 | 2.52e-21 | 97.1 |
| Msa0180650 | MtrunA17_Chr8g0380261 | 25.159 | 314 | 188 | 8 | 390 | 658 | 73 | 384 | 8.62e-20 | 92.0 |
| Msa0180650 | MtrunA17_Chr1g0167421 | 26.807 | 332 | 192 | 12 | 12 | 299 | 65 | 389 | 6.58e-21 | 95.9 |
| Msa0180650 | MtrunA17_Chr1g0167421 | 26.087 | 299 | 177 | 12 | 390 | 646 | 95 | 391 | 1.08e-16 | 83.2 |
| Msa0180650 | MtrunA17_Chr4g0049341 | 28.980 | 245 | 159 | 6 | 12 | 247 | 5 | 243 | 1.55e-19 | 90.1 |
| Msa0180650 | MtrunA17_Chr4g0049341 | 27.559 | 254 | 161 | 8 | 363 | 600 | 12 | 258 | 6.37e-17 | 82.4 |
| Msa0180650 | MtrunA17_Chr4g0018921 | 28.228 | 333 | 161 | 15 | 6 | 311 | 1 | 282 | 3.02e-15 | 77.4 |
| Msa0180650 | MtrunA17_Chr4g0018921 | 24.762 | 315 | 175 | 10 | 376 | 668 | 20 | 294 | 4.06e-12 | 67.8 |
| Msa0180650 | MtrunA17_Chr7g0221801 | 47.826 | 69 | 35 | 1 | 8 | 76 | 4 | 71 | 2.17e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180650 | AT1G60710.1 | 57.313 | 335 | 139 | 3 | 8 | 341 | 7 | 338 | 3.86e-128 | 383 |
| Msa0180650 | AT1G60710.1 | 57.231 | 325 | 134 | 4 | 363 | 686 | 18 | 338 | 2.75e-123 | 370 |
| Msa0180650 | AT1G60690.1 | 54.810 | 343 | 151 | 3 | 7 | 348 | 6 | 345 | 8.54e-127 | 380 |
| Msa0180650 | AT1G60690.1 | 55.692 | 325 | 139 | 4 | 363 | 686 | 18 | 338 | 1.79e-122 | 369 |
| Msa0180650 | AT1G60680.1 | 56.083 | 337 | 143 | 4 | 7 | 341 | 6 | 339 | 1.73e-126 | 379 |
| Msa0180650 | AT1G60680.1 | 56.615 | 325 | 137 | 3 | 363 | 686 | 18 | 339 | 5.30e-126 | 378 |
| Msa0180650 | AT1G60750.1 | 55.263 | 342 | 133 | 4 | 1 | 341 | 1 | 323 | 1.12e-124 | 374 |
| Msa0180650 | AT1G60750.1 | 56.173 | 324 | 123 | 4 | 363 | 686 | 19 | 323 | 7.90e-122 | 366 |
| Msa0180650 | AT1G60730.1 | 55.821 | 335 | 144 | 3 | 8 | 341 | 7 | 338 | 1.16e-124 | 374 |
| Msa0180650 | AT1G60730.1 | 55.385 | 325 | 140 | 4 | 363 | 686 | 18 | 338 | 1.54e-120 | 363 |
| Msa0180650 | AT1G10810.1 | 55.655 | 336 | 143 | 5 | 8 | 341 | 7 | 338 | 1.07e-121 | 367 |
| Msa0180650 | AT1G10810.1 | 55.385 | 325 | 140 | 4 | 363 | 686 | 18 | 338 | 3.92e-118 | 357 |
| Msa0180650 | AT1G60730.3 | 52.676 | 355 | 144 | 4 | 8 | 341 | 7 | 358 | 9.95e-120 | 362 |
| Msa0180650 | AT1G60730.3 | 52.174 | 345 | 140 | 5 | 363 | 686 | 18 | 358 | 1.33e-115 | 352 |
| Msa0180650 | AT1G10810.3 | 58.955 | 268 | 106 | 3 | 420 | 686 | 22 | 286 | 5.90e-104 | 319 |
| Msa0180650 | AT1G10810.3 | 57.303 | 267 | 111 | 2 | 76 | 341 | 22 | 286 | 1.57e-100 | 310 |
| Msa0180650 | AT1G60680.2 | 64.651 | 215 | 74 | 2 | 7 | 220 | 6 | 219 | 2.97e-90 | 281 |
| Msa0180650 | AT1G60680.2 | 64.532 | 203 | 71 | 1 | 363 | 565 | 18 | 219 | 1.12e-86 | 272 |
| Msa0180650 | AT1G10810.2 | 61.712 | 222 | 81 | 4 | 8 | 227 | 7 | 226 | 4.16e-85 | 268 |
| Msa0180650 | AT1G10810.2 | 60.190 | 211 | 81 | 3 | 363 | 572 | 18 | 226 | 3.70e-78 | 250 |
| Msa0180650 | AT1G60730.2 | 53.793 | 145 | 64 | 2 | 8 | 152 | 7 | 148 | 4.33e-42 | 151 |
| Msa0180650 | AT1G60730.2 | 51.111 | 135 | 62 | 3 | 363 | 497 | 18 | 148 | 1.43e-34 | 130 |
| Msa0180650 | AT1G04690.1 | 31.699 | 306 | 182 | 10 | 13 | 301 | 6 | 301 | 6.79e-31 | 124 |
| Msa0180650 | AT1G04690.1 | 31.561 | 301 | 178 | 10 | 363 | 646 | 12 | 301 | 1.13e-28 | 117 |
| Msa0180650 | AT1G06690.1 | 28.834 | 326 | 194 | 11 | 10 | 311 | 48 | 359 | 1.50e-26 | 112 |
| Msa0180650 | AT1G06690.1 | 28.963 | 328 | 190 | 12 | 363 | 662 | 57 | 369 | 7.74e-25 | 107 |
| Msa0180650 | AT5G53580.1 | 29.129 | 333 | 188 | 15 | 10 | 315 | 39 | 350 | 9.59e-24 | 103 |
| Msa0180650 | AT5G53580.1 | 27.640 | 322 | 190 | 13 | 364 | 660 | 47 | 350 | 7.94e-21 | 95.5 |
| Msa0180650 | AT4G33670.1 | 30.837 | 227 | 138 | 7 | 1 | 218 | 1 | 217 | 5.79e-23 | 100 |
| Msa0180650 | AT4G33670.1 | 28.346 | 254 | 159 | 8 | 363 | 600 | 15 | 261 | 6.28e-20 | 91.7 |
| Msa0180650 | AT1G04420.1 | 26.496 | 351 | 203 | 13 | 12 | 315 | 60 | 402 | 1.28e-18 | 89.4 |
| Msa0180650 | AT3G53880.1 | 26.087 | 253 | 124 | 10 | 54 | 282 | 42 | 255 | 3.52e-11 | 65.5 |
| Msa0180650 | AT3G53880.2 | 26.087 | 253 | 124 | 10 | 54 | 282 | 42 | 255 | 3.83e-11 | 65.5 |
| Msa0180650 | AT2G27680.1 | 23.171 | 328 | 217 | 11 | 10 | 314 | 48 | 363 | 5.27e-11 | 65.5 |
Find 172 sgRNAs with CRISPR-Local
Find 476 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTTCAAGCCTATCTTCT+TGG | 0.229354 | 1_4:-68634701 | Msa0180650:three_prime_UTR |
| AAGGTTTACAGGAGAAAATT+TGG | 0.231620 | 1_4:-68635513 | Msa0180650:CDS |
| TTTGGATGTGGAGGATTATC+TGG | 0.250656 | 1_4:-68636830 | Msa0180650:CDS |
| TTTGGATGTGGAGGATTATC+TGG | 0.250656 | 1_4:-68641728 | Msa0180650:CDS |
| CAGCACTCCCTCACATATTC+AGG | 0.270626 | 1_4:+68636393 | None:intergenic |
| CAGCACTCCCTCACATATTC+AGG | 0.270626 | 1_4:+68641212 | None:intergenic |
| GAAGGAAAGATAAAATATAT+TGG | 0.282400 | 1_4:-68636138 | Msa0180650:CDS |
| AGATGGATGTTCAATTATTA+AGG | 0.288430 | 1_4:-68641678 | Msa0180650:CDS |
| GTTCAATTGGCTACAAAGTT+TGG | 0.297740 | 1_4:-68641275 | Msa0180650:CDS |
| GCAAGTCCCAAGAGTTAAAC+TGG | 0.317895 | 1_4:-68642582 | Msa0180650:CDS |
| GAGATCTGATGTATCGAAAA+AGG | 0.319260 | 1_4:+68636736 | None:intergenic |
| GAGATCTGATGTATCGAAAA+AGG | 0.319260 | 1_4:+68641634 | None:intergenic |
| TGCAAATGGAGTATTCCTTA+TGG | 0.321118 | 1_4:-68640884 | Msa0180650:CDS |
| TCCTATTACTGCTTTGGAAA+TGG | 0.326973 | 1_4:-68636067 | Msa0180650:CDS |
| GTCCAATTGGCTACGAAGTT+TGG | 0.338391 | 1_4:-68636459 | Msa0180650:CDS |
| ATAGTATATCACAATATCTT+TGG | 0.338665 | 1_4:-68634912 | Msa0180650:CDS |
| GCTATGCATCCAAGGTTTAC+AGG | 0.342718 | 1_4:-68635524 | Msa0180650:CDS |
| ATTAAGGAAGTATTCAATAG+AGG | 0.343469 | 1_4:-68636764 | Msa0180650:CDS |
| ATTAAGGAAGTATTCAATAG+AGG | 0.343469 | 1_4:-68641662 | Msa0180650:CDS |
| GAAGGAAAGATAAGACATAT+TGG | 0.346838 | 1_4:-68640969 | Msa0180650:CDS |
| TGGAAATGGAGTATTCCTTA+TGG | 0.354234 | 1_4:-68636053 | Msa0180650:CDS |
| ACAAGTCCCAAGAGTCAAAC+TGG | 0.359871 | 1_4:-68637098 | Msa0180650:CDS |
| ATTAGCATGGCTTCTGCATC+AGG | 0.361890 | 1_4:-68635417 | Msa0180650:CDS |
| ATTAGCATGGCTTCTGCATC+AGG | 0.361890 | 1_4:-68640228 | Msa0180650:CDS |
| CAGGTTCACTGGAGTAAATC+TGG | 0.365796 | 1_4:-68640324 | Msa0180650:CDS |
| CAGATTTACTCCAGTGAACC+TGG | 0.365930 | 1_4:+68640325 | None:intergenic |
| AAGCTTACAGTGTCTTCAAT+TGG | 0.375485 | 1_4:+68636297 | None:intergenic |
| GGGTACCCAGTTTGACTCTT+GGG | 0.376406 | 1_4:+68637092 | None:intergenic |
| AGATGGATGCTCAATTATTA+AGG | 0.376538 | 1_4:-68636780 | Msa0180650:CDS |
| AAGCTTACGGTGTCTTCAAT+TGG | 0.376667 | 1_4:+68641116 | None:intergenic |
| ACTGGGTAGCCATGGTTTAG+AGG | 0.377445 | 1_4:-68642564 | Msa0180650:intron |
| TCCATTTCCAAAGCAGTAAT+AGG | 0.379605 | 1_4:+68636066 | None:intergenic |
| TCCATTTGCAAAGCAGTAAT+AGG | 0.379605 | 1_4:+68640897 | None:intergenic |
| AGTTCATCCTATTACTGCTT+TGG | 0.389070 | 1_4:-68636073 | Msa0180650:CDS |
| TCCTATTACTGCTTTGCAAA+TGG | 0.395606 | 1_4:-68640898 | Msa0180650:CDS |
| TGGGTACCCAGTTTGACTCT+TGG | 0.395833 | 1_4:+68637091 | None:intergenic |
| TAATTGAACATCCATCTTCA+TGG | 0.401357 | 1_4:+68641684 | None:intergenic |
| TCTAGGTTGGGATTTGGATG+TGG | 0.401427 | 1_4:-68641740 | Msa0180650:CDS |
| CGCCAAACTTCGTAGCCAAT+TGG | 0.403863 | 1_4:+68636457 | None:intergenic |
| TTTGTCTAGTCAGAGCTTGC+TGG | 0.406910 | 1_4:-68635837 | Msa0180650:intron |
| ATTTCAACAACCTTTAGCTT+TGG | 0.407222 | 1_4:-68642707 | Msa0180650:five_prime_UTR |
| TGGAATGCAGGTGTCTAGGC+TGG | 0.407445 | 1_4:-68636855 | Msa0180650:intron |
| TTGCATTCTTGCAGAGAACT+AGG | 0.412767 | 1_4:-68640661 | Msa0180650:intron |
| AAGGAAAGATAAAATATATT+GGG | 0.415250 | 1_4:-68636137 | Msa0180650:CDS |
| CAGGTGTCTAGGTTGGGATT+TGG | 0.416345 | 1_4:-68641746 | Msa0180650:CDS |
| TAATTGAGCATCCATCTTCA+TGG | 0.417389 | 1_4:+68636786 | None:intergenic |
| AAGGAAAGATAAGACATATT+GGG | 0.422532 | 1_4:-68640968 | Msa0180650:CDS |
| ACAGTTTGTCGCAATATAGT+TGG | 0.424329 | 1_4:-68639711 | Msa0180650:CDS |
| CAGGTGTCTAGGCTGGGATT+TGG | 0.427729 | 1_4:-68636848 | Msa0180650:CDS |
| TCCCCAGCAATTTCCTCAAC+GGG | 0.432009 | 1_4:+68634946 | None:intergenic |
| AGATGAAAATCCAAGAAGAT+AGG | 0.438862 | 1_4:+68634691 | None:intergenic |
| TTCTCTCTATGCAATTACTT+TGG | 0.439392 | 1_4:+68634871 | None:intergenic |
| GGCTACCCAGTTTAACTCTT+GGG | 0.439987 | 1_4:+68642576 | None:intergenic |
| TCTCTATGCAATTACTTTGG+CGG | 0.441447 | 1_4:+68634874 | None:intergenic |
| GCAATAATTGTGTTGAAGAA+TGG | 0.441753 | 1_4:-68642618 | Msa0180650:exon |
| TGCAGGAAAGTCAGTGGTAG+AGG | 0.445925 | 1_4:-68635861 | Msa0180650:CDS |
| TGCAGGAAAGTCGGTGGTAG+AGG | 0.447986 | 1_4:-68640596 | Msa0180650:CDS |
| TTCCCAGCGATTTCTGCAAC+AGG | 0.449536 | 1_4:+68639745 | None:intergenic |
| TCACTATGCAATTACTTTGG+CGG | 0.451369 | 1_4:+68639673 | None:intergenic |
| TTCAATGTCACGGGACCATA+AGG | 0.451962 | 1_4:+68636038 | None:intergenic |
| TTCAATGTCACGGGACCATA+AGG | 0.451962 | 1_4:+68640869 | None:intergenic |
| TGGCTACCCAGTTTAACTCT+TGG | 0.452145 | 1_4:+68642575 | None:intergenic |
| AATATGCATCCCAGGTTCAC+TGG | 0.452442 | 1_4:-68640335 | Msa0180650:CDS |
| CTATGAACGAATCAATGTAT+TGG | 0.457910 | 1_4:-68640285 | Msa0180650:CDS |
| TTGGCGTTACTTTATCTGAT+GGG | 0.457988 | 1_4:-68641256 | Msa0180650:CDS |
| TTAAGGAAGTATTCAATAGA+GGG | 0.463934 | 1_4:-68636763 | Msa0180650:CDS |
| TTAAGGAAGTATTCAATAGA+GGG | 0.463934 | 1_4:-68641661 | Msa0180650:CDS |
| TCTAGGCTGGGATTTGGATG+TGG | 0.464685 | 1_4:-68636842 | Msa0180650:CDS |
| GCTTACACAAGAAGATTTGA+AGG | 0.464856 | 1_4:-68634986 | Msa0180650:CDS |
| AAGAAATAATTCCACTCTGC+AGG | 0.468173 | 1_4:-68636014 | Msa0180650:intron |
| AAGAAATAATTCCACTCTGC+AGG | 0.468173 | 1_4:-68640845 | Msa0180650:intron |
| CAAACATGATAATGAAATCA+TGG | 0.469776 | 1_4:-68636705 | Msa0180650:CDS |
| CAATCATGATAATGAAATCA+TGG | 0.472249 | 1_4:-68641603 | Msa0180650:CDS |
| CAAAACTATGCCAAAGCTAA+AGG | 0.478220 | 1_4:+68642697 | None:intergenic |
| AGGTTGGGATTTGGATGTGG+AGG | 0.483229 | 1_4:-68641737 | Msa0180650:CDS |
| CTATGAACGAATCAATGACT+TGG | 0.485970 | 1_4:-68635474 | Msa0180650:CDS |
| CTCAAACAACTTGTAAATGA+AGG | 0.486296 | 1_4:-68636156 | Msa0180650:CDS |
| ATTAAGACAGTACCGGGGAT+AGG | 0.486830 | 1_4:+68640191 | None:intergenic |
| TTTGCATCATAGACAAAGAA+AGG | 0.487750 | 1_4:-68642640 | Msa0180650:five_prime_UTR |
| TATTTCTTCTTCAATGTCAC+GGG | 0.490828 | 1_4:+68636029 | None:intergenic |
| TATTTCTTCTTCAATGTCAC+GGG | 0.490828 | 1_4:+68640860 | None:intergenic |
| ACTTGCAGAGAGCTTGGCAT+TGG | 0.491374 | 1_4:-68635920 | Msa0180650:intron |
| TTAAGACAGTACCGGGGATA+GGG | 0.491603 | 1_4:+68640192 | None:intergenic |
| CGTTACTTTATCTGATGGGA+TGG | 0.494293 | 1_4:-68636436 | Msa0180650:CDS |
| TCTTGCAGAGAACTAGGGAT+TGG | 0.494459 | 1_4:-68640655 | Msa0180650:intron |
| TTCCAAATAAAAGACCTACT+AGG | 0.495848 | 1_4:+68634632 | None:intergenic |
| TAATGAAATCATGGTTGGTA+AGG | 0.496217 | 1_4:-68636696 | Msa0180650:intron |
| TAATGAAATCATGGTTGGTA+AGG | 0.496217 | 1_4:-68641594 | Msa0180650:intron |
| GCTCCCCTCTCCCATGAAGA+TGG | 0.496750 | 1_4:-68636797 | Msa0180650:CDS |
| GCTCCCCTCTCCCATGAAGA+TGG | 0.496750 | 1_4:-68641695 | Msa0180650:CDS |
| GTTCCTGTTGCAGAAATCGC+TGG | 0.498019 | 1_4:-68639748 | Msa0180650:CDS |
| TTTGTGGAATGCAGGTGTCT+AGG | 0.498511 | 1_4:-68636859 | Msa0180650:intron |
| TTTGGCGTTACTTTATCTGA+TGG | 0.501663 | 1_4:-68636441 | Msa0180650:CDS |
| TTACATAACTATATGTTACA+TGG | 0.503059 | 1_4:-68634732 | Msa0180650:three_prime_UTR |
| AGAGCTTGGCATTGGAATTG+TGG | 0.503993 | 1_4:-68635912 | Msa0180650:CDS |
| ATAAAGGCAGTACCAGGGAT+AGG | 0.507637 | 1_4:+68635380 | None:intergenic |
| TTTGGCGTTACTTTATCTGA+TGG | 0.508572 | 1_4:-68641257 | Msa0180650:CDS |
| TTGTGTACTTGCAGAGAGCT+TGG | 0.508860 | 1_4:-68635926 | Msa0180650:intron |
| TTCGATACATCAGATCTCTA+CGG | 0.509953 | 1_4:-68641629 | Msa0180650:CDS |
| TCCAAATAAAAGACCTACTA+GGG | 0.510890 | 1_4:+68634633 | None:intergenic |
| GTTCCCGTTGAGGAAATTGC+TGG | 0.516063 | 1_4:-68634949 | Msa0180650:CDS |
| AAGAACTTTGAAAACAACAT+TGG | 0.517205 | 1_4:-68635024 | Msa0180650:CDS |
| TTCGATACATCAGATCTCTA+CGG | 0.518721 | 1_4:-68636731 | Msa0180650:CDS |
| TTGGCGTTACTTTATCTGAT+GGG | 0.520907 | 1_4:-68636440 | Msa0180650:CDS |
| AATTACGATGCCTCCCTAGT+AGG | 0.522075 | 1_4:-68634646 | Msa0180650:three_prime_UTR |
| TTATTTCTTCTTCAATGTCA+CGG | 0.524264 | 1_4:+68636028 | None:intergenic |
| TTATTTCTTCTTCAATGTCA+CGG | 0.524264 | 1_4:+68640859 | None:intergenic |
| TGAAATGCAGGTGTCTAGGT+TGG | 0.531272 | 1_4:-68641753 | Msa0180650:intron |
| CATGATAATGAAATCATGGT+TGG | 0.532090 | 1_4:-68636701 | Msa0180650:CDS |
| CATGATAATGAAATCATGGT+TGG | 0.532090 | 1_4:-68641599 | Msa0180650:CDS |
| AAGAACTTTGAAAACAACAT+TGG | 0.532327 | 1_4:-68639823 | Msa0180650:CDS |
| CTTCTCAATTAGCATTAGCA+TGG | 0.532747 | 1_4:-68635430 | Msa0180650:CDS |
| CTTCTCAATTAGCATTAGCA+TGG | 0.532747 | 1_4:-68640241 | Msa0180650:CDS |
| GCAATAATAGCATTGAAGAA+TGG | 0.535037 | 1_4:-68637125 | Msa0180650:CDS |
| AGCATCCATCTTCATGGGAG+AGG | 0.535281 | 1_4:+68636792 | None:intergenic |
| AACATCCATCTTCATGGGAG+AGG | 0.535281 | 1_4:+68641690 | None:intergenic |
| TGCATTCTTGCAGAGAACTA+GGG | 0.536671 | 1_4:-68640660 | Msa0180650:intron |
| CTCCCCAGCAATTTCCTCAA+CGG | 0.536860 | 1_4:+68634945 | None:intergenic |
| TTCCCGTTGAGGAAATTGCT+GGG | 0.537080 | 1_4:-68634948 | Msa0180650:CDS |
| TAAAGGCAGTACCAGGGATA+GGG | 0.538643 | 1_4:+68635381 | None:intergenic |
| GTAGAGAAGTTATTTCATTG+AGG | 0.540205 | 1_4:+68634795 | None:intergenic |
| CATAACAGGCTATGCATCCA+AGG | 0.541468 | 1_4:-68635532 | Msa0180650:intron |
| AATTGAACATCCATCTTCAT+GGG | 0.543483 | 1_4:+68641685 | None:intergenic |
| GAAATGCAGGTGTCTAGGTT+GGG | 0.546430 | 1_4:-68641752 | Msa0180650:intron |
| AATTGAGCATCCATCTTCAT+GGG | 0.547134 | 1_4:+68636787 | None:intergenic |
| TTTGTGAAATGCAGGTGTCT+AGG | 0.548699 | 1_4:-68641757 | Msa0180650:intron |
| CATGCTAATGCTAATTGAGA+AGG | 0.548715 | 1_4:+68635431 | None:intergenic |
| CATGCTAATGCTAATTGAGA+AGG | 0.548715 | 1_4:+68640242 | None:intergenic |
| AGGCTGGGATTTGGATGTGG+AGG | 0.548733 | 1_4:-68636839 | Msa0180650:CDS |
| TTTGCCTAGTCAGAGCGTAC+TGG | 0.551045 | 1_4:-68640572 | Msa0180650:intron |
| AGCACTCCCTCACATATTCA+GGG | 0.555636 | 1_4:+68636394 | None:intergenic |
| AGCACTCCCTCACATATTCA+GGG | 0.555636 | 1_4:+68641213 | None:intergenic |
| GCATCCATCTTCATGGGAGA+GGG | 0.558062 | 1_4:+68636793 | None:intergenic |
| ACATCCATCTTCATGGGAGA+GGG | 0.558062 | 1_4:+68641691 | None:intergenic |
| TTCTGAAGCAGTTCCCGTTG+AGG | 0.562114 | 1_4:-68634959 | Msa0180650:CDS |
| TGGCGTTACTTTATCTGATG+GGG | 0.564408 | 1_4:-68641255 | Msa0180650:CDS |
| TGTAACAGAATATGCATCCC+AGG | 0.566555 | 1_4:-68640343 | Msa0180650:intron |
| AGAGTTAAACTGGGTAGCCA+TGG | 0.572311 | 1_4:-68642572 | Msa0180650:CDS |
| GATAAGACATATTGGGCTGT+CGG | 0.578864 | 1_4:-68640961 | Msa0180650:CDS |
| CATACCAGTACGCTCTGACT+AGG | 0.584560 | 1_4:+68640568 | None:intergenic |
| TTCCTGTTGCAGAAATCGCT+GGG | 0.587242 | 1_4:-68639747 | Msa0180650:CDS |
| TAAGGAAGTATTCAATAGAG+GGG | 0.591144 | 1_4:-68636762 | Msa0180650:CDS |
| TAAGGAAGTATTCAATAGAG+GGG | 0.591144 | 1_4:-68641660 | Msa0180650:CDS |
| TACATAACTATATGTTACAT+GGG | 0.596068 | 1_4:-68634731 | Msa0180650:three_prime_UTR |
| AACGACATAATCCCTATCCC+TGG | 0.597106 | 1_4:-68635392 | Msa0180650:intron |
| GGAATGCAGGTGTCTAGGCT+GGG | 0.598837 | 1_4:-68636854 | Msa0180650:intron |
| AAAATATATTGGGTTGTCAG+AGG | 0.607927 | 1_4:-68636127 | Msa0180650:CDS |
| AGGTACCCCTGAATATGTGA+GGG | 0.608935 | 1_4:-68636400 | Msa0180650:CDS |
| AGGTACCCCTGAATATGTGA+GGG | 0.608935 | 1_4:-68641219 | Msa0180650:CDS |
| AGAGTCAAACTGGGTACCCA+AGG | 0.612909 | 1_4:-68637088 | Msa0180650:intron |
| AGATTTACTCCAGTGAACCT+GGG | 0.614522 | 1_4:+68640326 | None:intergenic |
| ATTGGGCTGTCGGACGCTAG+TGG | 0.619279 | 1_4:-68640951 | Msa0180650:CDS |
| CATCCATCTTCATGGGAGAG+GGG | 0.619881 | 1_4:+68641692 | None:intergenic |
| AAGGTACCCCTGAATATGTG+AGG | 0.623139 | 1_4:-68636401 | Msa0180650:CDS |
| AAGGTACCCCTGAATATGTG+AGG | 0.623139 | 1_4:-68641220 | Msa0180650:CDS |
| TCCCGTTGAGGAAATTGCTG+GGG | 0.626472 | 1_4:-68634947 | Msa0180650:CDS |
| CATCCATCTTCATGGGAGAG+GGG | 0.630999 | 1_4:+68636794 | None:intergenic |
| GCTGTGAAGCTAGTCTCAAG+CGG | 0.634148 | 1_4:-68636374 | Msa0180650:CDS |
| TTGGAACTGAAGTGTCAACT+CGG | 0.636787 | 1_4:+68641135 | None:intergenic |
| CAATTTGTCTACCTGCAGAG+TGG | 0.638313 | 1_4:+68640834 | None:intergenic |
| CAAGTCCCAAGAGTTAAACT+GGG | 0.641040 | 1_4:-68642581 | Msa0180650:CDS |
| AATGACATAATCCCTATCCC+CGG | 0.651246 | 1_4:-68640203 | Msa0180650:intron |
| TTAGCATGGCTTCTGCATCA+GGG | 0.655505 | 1_4:-68635416 | Msa0180650:CDS |
| TTAGCATGGCTTCTGCATCA+GGG | 0.655505 | 1_4:-68640227 | Msa0180650:CDS |
| GAAAGTTTACCTCTAAACCA+TGG | 0.657755 | 1_4:+68642555 | None:intergenic |
| CAAGTCCCAAGAGTCAAACT+GGG | 0.662786 | 1_4:-68637097 | Msa0180650:CDS |
| GCTGTGAAGCGAGTCTCAAG+CGG | 0.663018 | 1_4:-68641193 | Msa0180650:CDS |
| GGTAGTTGGTACGGAGACAG+TGG | 0.668227 | 1_4:-68642732 | None:intergenic |
| AAATAAAAGACCTACTAGGG+AGG | 0.668609 | 1_4:+68634636 | None:intergenic |
| GCACTCCCTCACATATTCAG+GGG | 0.678614 | 1_4:+68636395 | None:intergenic |
| GCACTCCCTCACATATTCAG+GGG | 0.678614 | 1_4:+68641214 | None:intergenic |
| CAATTAATATACCTGCAGAG+TGG | 0.699441 | 1_4:+68636003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTAATTAATATTAA+AGG | - | chr1_4:68640043-68640062 | Msa0180650:intron | 0.0% |
| !! | TGATATTATATAATTCTATA+TGG | + | chr1_4:68635473-68635492 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAGATAACT+TGG | + | chr1_4:68638552-68638571 | None:intergenic | 10.0% |
| !!! | AGTTATCTTTTTTTTTTTTT+TGG | - | chr1_4:68638552-68638571 | Msa0180650:intron | 10.0% |
| !! | TAAAATTTACTAATCAATAA+AGG | - | chr1_4:68642102-68642121 | Msa0180650:intron | 10.0% |
| !! | TAAATAAGTAAAAACTTCAA+AGG | + | chr1_4:68635270-68635289 | None:intergenic | 15.0% |
| !! | ATTTCACAAAATAAAAAAAC+AGG | + | chr1_4:68635598-68635617 | None:intergenic | 15.0% |
| !!! | TTTTTGTAAAAGAAAACTTA+AGG | - | chr1_4:68636017-68636036 | Msa0180650:CDS | 15.0% |
| !!! | TATTTTTTACCATCATTATA+AGG | + | chr1_4:68636878-68636897 | None:intergenic | 15.0% |
| !! | AAAATAACTTTAATGAGATA+AGG | - | chr1_4:68636892-68636911 | Msa0180650:intron | 15.0% |
| !!! | TTTTTTATTTCTTTATCAAG+TGG | + | chr1_4:68637317-68637336 | None:intergenic | 15.0% |
| !! | TTGAATATAAATAGTAATTG+TGG | - | chr1_4:68637837-68637856 | Msa0180650:intron | 15.0% |
| !!! | TATCTTTTTTTTTTTTTTGG+TGG | - | chr1_4:68638555-68638574 | Msa0180650:intron | 15.0% |
| !!! | AAATTTATAGCTTTTACTAA+CGG | - | chr1_4:68638944-68638963 | Msa0180650:intron | 15.0% |
| !! | ACTAATGAAAAATAAATCTA+AGG | - | chr1_4:68639814-68639833 | Msa0180650:CDS | 15.0% |
| !!! | GCACTTTTTTTATATTAATT+TGG | - | chr1_4:68640096-68640115 | Msa0180650:intron | 15.0% |
| !! | AAGGAAAGATAAAATATATT+GGG | - | chr1_4:68641228-68641247 | Msa0180650:CDS | 15.0% |
| !! | TGAAGAATATCTTATTATAA+TGG | - | chr1_4:68641595-68641614 | Msa0180650:CDS | 15.0% |
| !! | TGTAGAATTTCTTATTATAA+TGG | - | chr1_4:68641713-68641732 | Msa0180650:CDS | 15.0% |
| !! | CATATATCATGAAAGATAAT+AGG | + | chr1_4:68635308-68635327 | None:intergenic | 20.0% |
| !! | TAAAAGTGAAAAAAGTGATT+GGG | + | chr1_4:68635516-68635535 | None:intergenic | 20.0% |
| !! | ATAAAAGTGAAAAAAGTGAT+TGG | + | chr1_4:68635517-68635536 | None:intergenic | 20.0% |
| !!! | AATCTTTTGTTTAATGTTTG+TGG | - | chr1_4:68635551-68635570 | Msa0180650:intron | 20.0% |
| !!! | TTTTTTATTTTGTGAAATGC+AGG | - | chr1_4:68635600-68635619 | Msa0180650:intron | 20.0% |
| !!! | TCAAAATGATTTATTAGCTT+TGG | + | chr1_4:68635808-68635827 | None:intergenic | 20.0% |
| !! | ATATATTATTAAGACAGTAC+CGG | + | chr1_4:68637184-68637203 | None:intergenic | 20.0% |
| !! | TACAATATCTACATACTTTA+TGG | + | chr1_4:68637451-68637470 | None:intergenic | 20.0% |
| !! | TTATATTTGTTTGATACCAT+AGG | - | chr1_4:68637506-68637525 | Msa0180650:intron | 20.0% |
| !! | TATATTTGTTTGATACCATA+GGG | - | chr1_4:68637507-68637526 | Msa0180650:intron | 20.0% |
| !! | AAAAATGTTTACAAGAGAAA+AGG | - | chr1_4:68637759-68637778 | Msa0180650:intron | 20.0% |
| !! | AAAATGTTTACAAGAGAAAA+GGG | - | chr1_4:68637760-68637779 | Msa0180650:intron | 20.0% |
| !!! | AGTAAATTTAGGATAATATC+TGG | + | chr1_4:68638009-68638028 | None:intergenic | 20.0% |
| !! | ATTCAATACAGAGTAAATTT+AGG | + | chr1_4:68638020-68638039 | None:intergenic | 20.0% |
| !! | TACAATAGTAAAAGATAACT+TGG | + | chr1_4:68638659-68638678 | None:intergenic | 20.0% |
| !!! | TTTTAATTATGAATGGTTAC+AGG | + | chr1_4:68638886-68638905 | None:intergenic | 20.0% |
| !!! | CAAAGTCTTTTAATTATGAA+TGG | + | chr1_4:68638893-68638912 | None:intergenic | 20.0% |
| !! | AAGTATCTATTGATGAAATT+TGG | + | chr1_4:68638920-68638939 | None:intergenic | 20.0% |
| !! | TCATCATCAACAAATAAATA+TGG | - | chr1_4:68639165-68639184 | Msa0180650:intron | 20.0% |
| !! | TACTAACATTATAGACAATA+GGG | + | chr1_4:68639776-68639795 | None:intergenic | 20.0% |
| !! | TTACTAACATTATAGACAAT+AGG | + | chr1_4:68639777-68639796 | None:intergenic | 20.0% |
| !! | CTATAATGTTAGTAAATTCA+TGG | - | chr1_4:68639782-68639801 | Msa0180650:CDS | 20.0% |
| !!! | ATGATTAGTTCAAAATTAAG+AGG | - | chr1_4:68640366-68640385 | Msa0180650:intron | 20.0% |
| !!! | AAATACATAAGCATTTTGTA+TGG | - | chr1_4:68640732-68640751 | Msa0180650:intron | 20.0% |
| !! | GAAGGAAAGATAAAATATAT+TGG | - | chr1_4:68641227-68641246 | Msa0180650:CDS | 20.0% |
| !!! | TTCTTCTGAAAGATAAATAA+AGG | + | chr1_4:68642004-68642023 | None:intergenic | 20.0% |
| !!! | AGAAGAATATGATGATTTTT+TGG | - | chr1_4:68642017-68642036 | Msa0180650:intron | 20.0% |
| !! | ATATTTGTTTGATACCATAT+AGG | - | chr1_4:68642305-68642324 | Msa0180650:intron | 20.0% |
| !! | TATTTGTTTGATACCATATA+GGG | - | chr1_4:68642306-68642325 | Msa0180650:intron | 20.0% |
| !! | ATAGTATATCACAATATCTT+TGG | - | chr1_4:68642453-68642472 | Msa0180650:intron | 20.0% |
| !! | TTACATAACTATATGTTACA+TGG | - | chr1_4:68642633-68642652 | Msa0180650:five_prime_UTR | 20.0% |
| !! | TACATAACTATATGTTACAT+GGG | - | chr1_4:68642634-68642653 | Msa0180650:five_prime_UTR | 20.0% |
| ! | AACAAATCTTAATGATGAAG+TGG | + | chr1_4:68634875-68634894 | None:intergenic | 25.0% |
| !! | TGTTTTCTTCATCTTAATGT+TGG | + | chr1_4:68634919-68634938 | None:intergenic | 25.0% |
| !!! | GAAGAAAACATAAAAGTACT+AGG | - | chr1_4:68634929-68634948 | Msa0180650:CDS | 25.0% |
| ! | ATGTTAAAGTTATCAGTTGA+AGG | + | chr1_4:68634994-68635013 | None:intergenic | 25.0% |
| ! | CTGATAACTTTAACATTAAG+AGG | - | chr1_4:68634998-68635017 | Msa0180650:CDS | 25.0% |
| !! | GTTTTTATGTGTGACTAAAA+TGG | + | chr1_4:68635339-68635358 | None:intergenic | 25.0% |
| ! | TGGAATTCTAAATTTCTAAC+TGG | + | chr1_4:68635386-68635405 | None:intergenic | 25.0% |
| ! | ACTATAGAGATTACTTATGA+TGG | + | chr1_4:68635406-68635425 | None:intergenic | 25.0% |
| ! | AGATGGATGTTCAATTATTA+AGG | - | chr1_4:68635687-68635706 | Msa0180650:intron | 25.0% |
| !!! | ATTAAGGAAGTATTCAATAG+AGG | - | chr1_4:68635703-68635722 | Msa0180650:intron | 25.0% |
| !!! | TTAAGGAAGTATTCAATAGA+GGG | - | chr1_4:68635704-68635723 | Msa0180650:intron | 25.0% |
| !! | CAATCATGATAATGAAATCA+TGG | - | chr1_4:68635762-68635781 | Msa0180650:intron | 25.0% |
| !!! | TCATTTTGATTGTAAGTCTA+AGG | - | chr1_4:68635819-68635838 | Msa0180650:intron | 25.0% |
| !!! | CATTTTGATTGTAAGTCTAA+GGG | - | chr1_4:68635820-68635839 | Msa0180650:intron | 25.0% |
| !!! | ATTCATCTATTTTCAAGTGT+TGG | + | chr1_4:68636313-68636332 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTGGTAAATGA+AGG | - | chr1_4:68636378-68636397 | Msa0180650:CDS | 25.0% |
| ! | AAGGAAAGATAAGACATATT+GGG | - | chr1_4:68636397-68636416 | Msa0180650:CDS | 25.0% |
| !! | TTATTTCTTCTTCAATGTCA+CGG | + | chr1_4:68636509-68636528 | None:intergenic | 25.0% |
| !! | TCCAGTTAGTTTGATATATT+TGG | - | chr1_4:68636594-68636613 | Msa0180650:intron | 25.0% |
| !! | ATATTTATAGCATTTTCCCT+CGG | + | chr1_4:68636947-68636966 | None:intergenic | 25.0% |
| ! | TATATTATTAAGACAGTACC+GGG | + | chr1_4:68637183-68637202 | None:intergenic | 25.0% |
| ! | ATCAAACAAATATAAGCACT+TGG | + | chr1_4:68637501-68637520 | None:intergenic | 25.0% |
| !! | AAGAACTTTGAAAACAACAT+TGG | - | chr1_4:68637542-68637561 | Msa0180650:intron | 25.0% |
| ! | TTGTGGAAGTTATTAAGATT+AGG | - | chr1_4:68637854-68637873 | Msa0180650:intron | 25.0% |
| ! | TTATTAAGATTAGGCAGTTA+GGG | - | chr1_4:68637863-68637882 | Msa0180650:intron | 25.0% |
| ! | AGATCACACATAATAACATT+AGG | + | chr1_4:68637944-68637963 | None:intergenic | 25.0% |
| ! | GGATAATATCTGGTATTTAT+TGG | + | chr1_4:68637999-68638018 | None:intergenic | 25.0% |
| !!! | TTTTGATGGTTTTGATAAGA+GGG | - | chr1_4:68638083-68638102 | Msa0180650:intron | 25.0% |
| ! | TTAGTATATCTGTGAAACAT+AGG | + | chr1_4:68638303-68638322 | None:intergenic | 25.0% |
| !!! | CATTCAGTTTTTGCTTTTTA+TGG | - | chr1_4:68638448-68638467 | Msa0180650:intron | 25.0% |
| !!! | CTTTTTTTTTTTTTTGGTGG+TGG | - | chr1_4:68638558-68638577 | Msa0180650:intron | 25.0% |
| ! | ATTCTCATTAGTTGTAAAGT+GGG | + | chr1_4:68638731-68638750 | None:intergenic | 25.0% |
| ! | AGTTTCAACTAACATTGTTA+AGG | + | chr1_4:68638837-68638856 | None:intergenic | 25.0% |
| ! | CATATAGAACATATCATCTT+TGG | - | chr1_4:68639228-68639247 | Msa0180650:intron | 25.0% |
| !!! | TAATATCGGTTTAAAAAGCT+CGG | - | chr1_4:68639329-68639348 | Msa0180650:intron | 25.0% |
| ! | GTTGATCAAACAAATTACAA+TGG | - | chr1_4:68639354-68639373 | Msa0180650:intron | 25.0% |
| ! | TTATAATCCTTGAGTGTATA+TGG | - | chr1_4:68639727-68639746 | Msa0180650:CDS | 25.0% |
| !! | AATTTGGAAGCAAAAGTTTT+TGG | - | chr1_4:68640112-68640131 | Msa0180650:intron | 25.0% |
| !! | ATTTGGAAGCAAAAGTTTTT+GGG | - | chr1_4:68640113-68640132 | Msa0180650:intron | 25.0% |
| ! | AAAATTTACCTCTAAACCTT+GGG | + | chr1_4:68640296-68640315 | None:intergenic | 25.0% |
| ! | TGTGAAAAACAAATGTTAAG+TGG | + | chr1_4:68640341-68640360 | None:intergenic | 25.0% |
| ! | AGAAATCATTAAACTACTGT+AGG | - | chr1_4:68640390-68640409 | Msa0180650:intron | 25.0% |
| ! | TTCTTTCAAGATGAAACTTA+TGG | - | chr1_4:68640447-68640466 | Msa0180650:intron | 25.0% |
| ! | AAGATGAAACTTATGGATAA+AGG | - | chr1_4:68640454-68640473 | Msa0180650:intron | 25.0% |
| ! | TATGATGAATGTATATCTGA+AGG | + | chr1_4:68640482-68640501 | None:intergenic | 25.0% |
| !!! | ATTAAGGAAGTATTCAATAG+AGG | - | chr1_4:68635703-68635722 | Msa0180650:intron | 25.0% |
| !!! | TTAAGGAAGTATTCAATAGA+GGG | - | chr1_4:68635704-68635723 | Msa0180650:intron | 25.0% |
| !! | CAAACATGATAATGAAATCA+TGG | - | chr1_4:68640660-68640679 | Msa0180650:intron | 25.0% |
| ! | AGTTATTTAGATGTGACAAA+TGG | - | chr1_4:68640822-68640841 | Msa0180650:intron | 25.0% |
| !! | TTATTTCTTCTTCAATGTCA+CGG | + | chr1_4:68636509-68636528 | None:intergenic | 25.0% |
| ! | ATTAATTGCTTGACATATTC+AGG | - | chr1_4:68642048-68642067 | Msa0180650:intron | 25.0% |
| !! | ATCTATTTCCAGATTTTACT+TGG | - | chr1_4:68642073-68642092 | Msa0180650:intron | 25.0% |
| ! | TAAGATAACCAAGTAAAATC+TGG | + | chr1_4:68642084-68642103 | None:intergenic | 25.0% |
| ! | GAAAGTAGGTAGTAATAAAA+GGG | + | chr1_4:68642153-68642172 | None:intergenic | 25.0% |
| ! | TGAAAGTAGGTAGTAATAAA+AGG | + | chr1_4:68642154-68642173 | None:intergenic | 25.0% |
| !! | AAGAACTTTGAAAACAACAT+TGG | - | chr1_4:68637542-68637561 | Msa0180650:intron | 25.0% |
| ! | ATTTCAACAACCTTTAGCTT+TGG | - | chr1_4:68634658-68634677 | Msa0180650:three_prime_UTR | 30.0% |
| TTTGCATCATAGACAAAGAA+AGG | - | chr1_4:68634725-68634744 | Msa0180650:three_prime_UTR | 30.0% | |
| GCAATAATTGTGTTGAAGAA+TGG | - | chr1_4:68634747-68634766 | Msa0180650:three_prime_UTR | 30.0% | |
| TAGGTGATTAGAAACACAAA+AGG | - | chr1_4:68634948-68634967 | Msa0180650:CDS | 30.0% | |
| !! | AAAACTTCAAAGGAAGCATT+AGG | + | chr1_4:68635260-68635279 | None:intergenic | 30.0% |
| GACTGAGAAAATAAAATGCA+CGG | + | chr1_4:68635364-68635383 | None:intergenic | 30.0% | |
| TAATGTTTGTGGATTCTGAT+AGG | - | chr1_4:68635562-68635581 | Msa0180650:intron | 30.0% | |
| AATGTTTGTGGATTCTGATA+GGG | - | chr1_4:68635563-68635582 | Msa0180650:intron | 30.0% | |
| AATTGAACATCCATCTTCAT+GGG | + | chr1_4:68635683-68635702 | None:intergenic | 30.0% | |
| TAATTGAACATCCATCTTCA+TGG | + | chr1_4:68635684-68635703 | None:intergenic | 30.0% | |
| !! | TAAGGAAGTATTCAATAGAG+GGG | - | chr1_4:68635705-68635724 | Msa0180650:intron | 30.0% |
| ! | CATGATAATGAAATCATGGT+TGG | - | chr1_4:68635766-68635785 | Msa0180650:intron | 30.0% |
| ! | TAATGAAATCATGGTTGGTA+AGG | - | chr1_4:68635771-68635790 | Msa0180650:intron | 30.0% |
| AATTCCTTAGATGTGACAAA+TGG | - | chr1_4:68635924-68635943 | Msa0180650:intron | 30.0% | |
| ATTCCTTAGATGTGACAAAT+GGG | - | chr1_4:68635925-68635944 | Msa0180650:intron | 30.0% | |
| !!! | TTACTGATGTCGTTTTAACA+CGG | - | chr1_4:68635963-68635982 | Msa0180650:intron | 30.0% |
| GGAAAATCATTGAAAGCTTA+CGG | + | chr1_4:68636265-68636284 | None:intergenic | 30.0% | |
| !!! | TCTATTTTCAAGTGTTGGAA+TGG | + | chr1_4:68636308-68636327 | None:intergenic | 30.0% |
| GAAGGAAAGATAAGACATAT+TGG | - | chr1_4:68636396-68636415 | Msa0180650:CDS | 30.0% | |
| TATTTCTTCTTCAATGTCAC+GGG | + | chr1_4:68636508-68636527 | None:intergenic | 30.0% | |
| AACTAACTGGAGTATAATTG+TGG | + | chr1_4:68636585-68636604 | None:intergenic | 30.0% | |
| GCCAAATATATCAAACTAAC+TGG | + | chr1_4:68636598-68636617 | None:intergenic | 30.0% | |
| GTGTTATGTTTGCGTTAATT+TGG | - | chr1_4:68636845-68636864 | Msa0180650:CDS | 30.0% | |
| ! | GGAGATTTTCCTTATAATGA+TGG | - | chr1_4:68636866-68636885 | Msa0180650:intron | 30.0% |
| ACTTTAATGAGATAAGGTTC+AGG | - | chr1_4:68636898-68636917 | Msa0180650:intron | 30.0% | |
| CTATGAACGAATCAATGTAT+TGG | - | chr1_4:68637080-68637099 | Msa0180650:intron | 30.0% | |
| ATATTATTAAGACAGTACCG+GGG | + | chr1_4:68637182-68637201 | None:intergenic | 30.0% | |
| CATTATGCACATAACAGATA+AGG | + | chr1_4:68637357-68637376 | None:intergenic | 30.0% | |
| CTATCAGTATCAAGGATATA+AGG | + | chr1_4:68637382-68637401 | None:intergenic | 30.0% | |
| TTCTCACTATGCAATTACTT+TGG | + | chr1_4:68637698-68637717 | None:intergenic | 30.0% | |
| CTAACAAAACACTTATTGCA+GGG | + | chr1_4:68637729-68637748 | None:intergenic | 30.0% | |
| TCTAACAAAACACTTATTGC+AGG | + | chr1_4:68637730-68637749 | None:intergenic | 30.0% | |
| GTTATTAAGATTAGGCAGTT+AGG | - | chr1_4:68637862-68637881 | Msa0180650:intron | 30.0% | |
| AGTTAGGGTGTGTAATAAAT+AGG | - | chr1_4:68637878-68637897 | Msa0180650:intron | 30.0% | |
| !!! | GTTTTGATGGTTTTGATAAG+AGG | - | chr1_4:68638082-68638101 | Msa0180650:intron | 30.0% |
| CAGATAGAAATACTTGAACA+TGG | - | chr1_4:68638118-68638137 | Msa0180650:intron | 30.0% | |
| ATACTTGAACATGGATTTGA+AGG | - | chr1_4:68638127-68638146 | Msa0180650:intron | 30.0% | |
| TACTTGAACATGGATTTGAA+GGG | - | chr1_4:68638128-68638147 | Msa0180650:intron | 30.0% | |
| GAATAAAGACAAAGACATGA+AGG | - | chr1_4:68638482-68638501 | Msa0180650:intron | 30.0% | |
| TCAAGTAACTAAGTAACTTG+TGG | + | chr1_4:68638526-68638545 | None:intergenic | 30.0% | |
| GACAATGCATTATATATGCA+AGG | + | chr1_4:68638603-68638622 | None:intergenic | 30.0% | |
| TTCTCATTAGTTGTAAAGTG+GGG | + | chr1_4:68638730-68638749 | None:intergenic | 30.0% | |
| CATTCTCATTAGTTGTAAAG+TGG | + | chr1_4:68638732-68638751 | None:intergenic | 30.0% | |
| TAACATTGTTAAGGCATGTA+TGG | + | chr1_4:68638828-68638847 | None:intergenic | 30.0% | |
| ACAATGTTAGTTGAAACTTG+TGG | - | chr1_4:68638839-68638858 | Msa0180650:intron | 30.0% | |
| AGTTGAAACTTGTGGATAAA+TGG | - | chr1_4:68638847-68638866 | Msa0180650:intron | 30.0% | |
| TTTACTAACGGTAATGTTGA+AGG | - | chr1_4:68638956-68638975 | Msa0180650:intron | 30.0% | |
| !! | ACCTCTAAAGTGATCTATAT+AGG | + | chr1_4:68638988-68639007 | None:intergenic | 30.0% |
| ! | TATAGATCACTTTAGAGGTT+AGG | - | chr1_4:68638989-68639008 | Msa0180650:intron | 30.0% |
| GATATGTTCTATATGAAAGC+AGG | + | chr1_4:68639223-68639242 | None:intergenic | 30.0% | |
| TATCACATTGCAGCTAATAT+CGG | - | chr1_4:68639315-68639334 | Msa0180650:intron | 30.0% | |
| !! | AATATCGGTTTAAAAAGCTC+GGG | - | chr1_4:68639330-68639349 | Msa0180650:intron | 30.0% |
| AAGCACATTATGACAGTTAA+AGG | + | chr1_4:68639425-68639444 | None:intergenic | 30.0% | |
| ! | TAAATAAACCCTTTTAGACG+TGG | - | chr1_4:68639675-68639694 | Msa0180650:intron | 30.0% |
| CAAAATGGTAGTTTACTCTT+AGG | - | chr1_4:68639944-68639963 | Msa0180650:intron | 30.0% | |
| ! | TTTTACACCTTAACATGCTT+CGG | - | chr1_4:68639979-68639998 | Msa0180650:intron | 30.0% |
| ATTTAAACCGAAGCATGTTA+AGG | + | chr1_4:68639989-68640008 | None:intergenic | 30.0% | |
| ! | TTTGGAAGCAAAAGTTTTTG+GGG | - | chr1_4:68640114-68640133 | Msa0180650:intron | 30.0% |
| GTATTTCAACTTTGCATCTT+AGG | - | chr1_4:68640213-68640232 | Msa0180650:CDS | 30.0% | |
| ! | GCAATAATAGCATTGAAGAA+TGG | - | chr1_4:68640240-68640259 | Msa0180650:CDS | 30.0% |
| GAAAATTTACCTCTAAACCT+TGG | + | chr1_4:68640297-68640316 | None:intergenic | 30.0% | |
| ATGTTAAGTGGTTGACAATA+AGG | + | chr1_4:68640329-68640348 | None:intergenic | 30.0% | |
| AATCATTAAACTACTGTAGG+AGG | - | chr1_4:68640393-68640412 | Msa0180650:intron | 30.0% | |
| AATTAGTAACCAGTTCATAG+TGG | - | chr1_4:68640417-68640436 | Msa0180650:intron | 30.0% | |
| AACAAATTTCCACTATGAAC+TGG | + | chr1_4:68640429-68640448 | None:intergenic | 30.0% | |
| AGATGGATGCTCAATTATTA+AGG | - | chr1_4:68640585-68640604 | Msa0180650:CDS | 30.0% | |
| !! | TAAGGAAGTATTCAATAGAG+GGG | - | chr1_4:68635705-68635724 | Msa0180650:intron | 30.0% |
| ! | CATGATAATGAAATCATGGT+TGG | - | chr1_4:68635766-68635785 | Msa0180650:intron | 30.0% |
| ! | TAATGAAATCATGGTTGGTA+AGG | - | chr1_4:68635771-68635790 | Msa0180650:intron | 30.0% |
| ! | TGAATCTTTTCTTCTGTCAT+AGG | - | chr1_4:68640857-68640876 | Msa0180650:CDS | 30.0% |
| TTCCAACACTTGTAAATTCT+CGG | - | chr1_4:68641141-68641160 | Msa0180650:CDS | 30.0% | |
| CTTTAACATTGACCTCTTTA+TGG | - | chr1_4:68641174-68641193 | Msa0180650:CDS | 30.0% | |
| CTCAAACAACTTGTAAATGA+AGG | - | chr1_4:68641209-68641228 | Msa0180650:CDS | 30.0% | |
| ! | AAAATATATTGGGTTGTCAG+AGG | - | chr1_4:68641238-68641257 | Msa0180650:CDS | 30.0% |
| TATTTCTTCTTCAATGTCAC+GGG | + | chr1_4:68636508-68636527 | None:intergenic | 30.0% | |
| TGGTCAAAATAACATTGATG+AGG | - | chr1_4:68641615-68641634 | Msa0180650:CDS | 30.0% | |
| TGGTCAAAATAACATTGATG+AGG | - | chr1_4:68641615-68641634 | Msa0180650:CDS | 30.0% | |
| TCTTCTTTCTGTAACATAAC+AGG | - | chr1_4:68641819-68641838 | Msa0180650:intron | 30.0% | |
| ! | AAATTTTCTCCTGTAAACCT+TGG | + | chr1_4:68641853-68641872 | None:intergenic | 30.0% |
| AAGGTTTACAGGAGAAAATT+TGG | - | chr1_4:68641852-68641871 | Msa0180650:intron | 30.0% | |
| ! | CAGTATATGGTCAAGATTTT+AGG | + | chr1_4:68642230-68642249 | None:intergenic | 30.0% |
| TTCTCTCTATGCAATTACTT+TGG | + | chr1_4:68642497-68642516 | None:intergenic | 30.0% | |
| ! | GTAGAGAAGTTATTTCATTG+AGG | + | chr1_4:68642573-68642592 | None:intergenic | 30.0% |
| TTATTTCAAGCCTATCTTCT+TGG | - | chr1_4:68642664-68642683 | Msa0180650:five_prime_UTR | 30.0% | |
| AGATGAAAATCCAAGAAGAT+AGG | + | chr1_4:68642677-68642696 | None:intergenic | 30.0% | |
| ! | TATCTTCTTGGATTTTCATC+TGG | - | chr1_4:68642676-68642695 | Msa0180650:five_prime_UTR | 30.0% |
| ! | TTGGATTTTCATCTGGTAAA+TGG | - | chr1_4:68642683-68642702 | Msa0180650:five_prime_UTR | 30.0% |
| CAAAACTATGCCAAAGCTAA+AGG | + | chr1_4:68634671-68634690 | None:intergenic | 35.0% | |
| GAAAGTTTACCTCTAAACCA+TGG | + | chr1_4:68634813-68634832 | None:intergenic | 35.0% | |
| AGAATGAAAGTGGCAATTTG+GGG | + | chr1_4:68634840-68634859 | None:intergenic | 35.0% | |
| GAGAATGAAAGTGGCAATTT+GGG | + | chr1_4:68634841-68634860 | None:intergenic | 35.0% | |
| GCTAATAAGGAGAATGAAAG+TGG | + | chr1_4:68634850-68634869 | None:intergenic | 35.0% | |
| TGATGAAGTGGTTGCTAATA+AGG | + | chr1_4:68634863-68634882 | None:intergenic | 35.0% | |
| ACACAAAAGGCTTACATGAA+TGG | - | chr1_4:68634961-68634980 | Msa0180650:CDS | 35.0% | |
| GTTGAAGGGACTAAAACAAA+TGG | + | chr1_4:68635038-68635057 | None:intergenic | 35.0% | |
| GTGCTTGATTGAAGAAAACA+AGG | - | chr1_4:68635067-68635086 | Msa0180650:intron | 35.0% | |
| GTGTGACTAAAATGGATCTA+TGG | + | chr1_4:68635331-68635350 | None:intergenic | 35.0% | |
| GAGATCTGATGTATCGAAAA+AGG | + | chr1_4:68635734-68635753 | None:intergenic | 35.0% | |
| TTCGATACATCAGATCTCTA+CGG | - | chr1_4:68635736-68635755 | Msa0180650:intron | 35.0% | |
| ! | TGAGTCTTTTCTTCTGTCAT+AGG | - | chr1_4:68636041-68636060 | Msa0180650:CDS | 35.0% |
| !!! | TAGCCAATTGAACTTTTTCG+CGG | + | chr1_4:68636083-68636102 | None:intergenic | 35.0% |
| GTTCAATTGGCTACAAAGTT+TGG | - | chr1_4:68636090-68636109 | Msa0180650:CDS | 35.0% | |
| ! | TTTGGCGTTACTTTATCTGA+TGG | - | chr1_4:68636108-68636127 | Msa0180650:CDS | 35.0% |
| ! | TTGGCGTTACTTTATCTGAT+GGG | - | chr1_4:68636109-68636128 | Msa0180650:CDS | 35.0% |
| !!! | GATGGGGTTTTTAGAGTAAA+AGG | - | chr1_4:68636126-68636145 | Msa0180650:CDS | 35.0% |
| GTATGCATAACTAAGAAGAG+AGG | + | chr1_4:68636286-68636305 | None:intergenic | 35.0% | |
| ! | CTTCGACTTGTTTATGAAGA+TGG | - | chr1_4:68636350-68636369 | Msa0180650:CDS | 35.0% |
| TCCTATTACTGCTTTGCAAA+TGG | - | chr1_4:68636467-68636486 | Msa0180650:CDS | 35.0% | |
| TCCATTTGCAAAGCAGTAAT+AGG | + | chr1_4:68636471-68636490 | None:intergenic | 35.0% | |
| ! | TGCAAATGGAGTATTCCTTA+TGG | - | chr1_4:68636481-68636500 | Msa0180650:CDS | 35.0% |
| AAGAAATAATTCCACTCTGC+AGG | - | chr1_4:68636520-68636539 | Msa0180650:intron | 35.0% | |
| GTCAGTAGAAAAATACTGCA+GGG | + | chr1_4:68636987-68637006 | None:intergenic | 35.0% | |
| TGTCAGTAGAAAAATACTGC+AGG | + | chr1_4:68636988-68637007 | None:intergenic | 35.0% | |
| CATGCTAATGCTAATTGAGA+AGG | + | chr1_4:68637126-68637145 | None:intergenic | 35.0% | |
| CTTCTCAATTAGCATTAGCA+TGG | - | chr1_4:68637124-68637143 | Msa0180650:CDS | 35.0% | |
| GACAGTAACTATCAGTATCA+AGG | + | chr1_4:68637390-68637409 | None:intergenic | 35.0% | |
| ACAGTTTGTCGCAATATAGT+TGG | - | chr1_4:68637654-68637673 | Msa0180650:intron | 35.0% | |
| TCACTATGCAATTACTTTGG+CGG | + | chr1_4:68637695-68637714 | None:intergenic | 35.0% | |
| AATAGGACAATTGCATGTTG+TGG | - | chr1_4:68637895-68637914 | Msa0180650:intron | 35.0% | |
| TTGAATTGCTACCTATCAAC+TGG | - | chr1_4:68638034-68638053 | Msa0180650:intron | 35.0% | |
| GTTCTTCATGAGAGAAAAGA+TGG | - | chr1_4:68638153-68638172 | Msa0180650:intron | 35.0% | |
| TGAATGCAGAAAAACAGAAG+TGG | + | chr1_4:68638379-68638398 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGGTGGTGGC+CGG | - | chr1_4:68638562-68638581 | Msa0180650:intron | 35.0% |
| TGCATTATATATGCAAGGTC+CGG | + | chr1_4:68638598-68638617 | None:intergenic | 35.0% | |
| CTCACTGTGAATATCATAGT+TGG | - | chr1_4:68638685-68638704 | Msa0180650:intron | 35.0% | |
| TCATAGAACTGTAGTTGCTA+TGG | - | chr1_4:68638802-68638821 | Msa0180650:intron | 35.0% | |
| ATGGTTACAGGTATATCTGA+AGG | + | chr1_4:68638874-68638893 | None:intergenic | 35.0% | |
| GCCTATATAGATCACTTTAG+AGG | - | chr1_4:68638984-68639003 | Msa0180650:intron | 35.0% | |
| GTAGTGTATGATAGATAGTC+AGG | + | chr1_4:68639094-68639113 | None:intergenic | 35.0% | |
| ! | TATTTCTGATTTCCCAGTCA+AGG | - | chr1_4:68639114-68639133 | Msa0180650:intron | 35.0% |
| !!! | GGTGCTGCTACAAATTTTTT+AGG | - | chr1_4:68639135-68639154 | Msa0180650:intron | 35.0% |
| GATGAGAATTGAGATAGTCA+TGG | + | chr1_4:68639280-68639299 | None:intergenic | 35.0% | |
| ! | TTCAGTTGATTGCTTTGTTG+AGG | + | chr1_4:68639463-68639482 | None:intergenic | 35.0% |
| GATGACCTATCATACATTCA+CGG | - | chr1_4:68639919-68639938 | Msa0180650:intron | 35.0% | |
| TTGATCCGTGAATGTATGAT+AGG | + | chr1_4:68639927-68639946 | None:intergenic | 35.0% | |
| CATACATTCACGGATCAAAA+TGG | - | chr1_4:68639929-68639948 | Msa0180650:intron | 35.0% | |
| TAAGTGGTTGACAATAAGGA+AGG | + | chr1_4:68640325-68640344 | None:intergenic | 35.0% | |
| ACATTCATCATAGTGCTTTG+TGG | - | chr1_4:68640490-68640509 | Msa0180650:intron | 35.0% | |
| AATTGAGCATCCATCTTCAT+GGG | + | chr1_4:68640581-68640600 | None:intergenic | 35.0% | |
| TAATTGAGCATCCATCTTCA+TGG | + | chr1_4:68640582-68640601 | None:intergenic | 35.0% | |
| GAGATCTGATGTATCGAAAA+AGG | + | chr1_4:68635734-68635753 | None:intergenic | 35.0% | |
| TTCGATACATCAGATCTCTA+CGG | - | chr1_4:68635736-68635755 | Msa0180650:intron | 35.0% | |
| !!! | TAGCCAATTGGACTTTTTTG+CGG | + | chr1_4:68640899-68640918 | None:intergenic | 35.0% |
| ! | TTTGGCGTTACTTTATCTGA+TGG | - | chr1_4:68636108-68636127 | Msa0180650:CDS | 35.0% |
| ! | TTGGCGTTACTTTATCTGAT+GGG | - | chr1_4:68636109-68636128 | Msa0180650:CDS | 35.0% |
| ! | TTATCTGATGGGATGGTTTT+AGG | - | chr1_4:68640936-68640955 | Msa0180650:CDS | 35.0% |
| !! | TATCTGATGGGATGGTTTTA+GGG | - | chr1_4:68640937-68640956 | Msa0180650:CDS | 35.0% |
| AAGCTTACAGTGTCTTCAAT+TGG | + | chr1_4:68641071-68641090 | None:intergenic | 35.0% | |
| ACTAAGTGTAGTACTAGTAG+AGG | + | chr1_4:68641105-68641124 | None:intergenic | 35.0% | |
| ATTGACCTCTTTATGGAAGA+TGG | - | chr1_4:68641181-68641200 | Msa0180650:CDS | 35.0% | |
| AGTTCATCCTATTACTGCTT+TGG | - | chr1_4:68636461-68636480 | Msa0180650:CDS | 35.0% | |
| !! | TCCTATTACTGCTTTGGAAA+TGG | - | chr1_4:68641298-68641317 | Msa0180650:CDS | 35.0% |
| TCCATTTCCAAAGCAGTAAT+AGG | + | chr1_4:68641302-68641321 | None:intergenic | 35.0% | |
| ! | TGGAAATGGAGTATTCCTTA+TGG | - | chr1_4:68641312-68641331 | Msa0180650:intron | 35.0% |
| AAGAAATAATTCCACTCTGC+AGG | - | chr1_4:68636520-68636539 | Msa0180650:intron | 35.0% | |
| CAATTAATATACCTGCAGAG+TGG | + | chr1_4:68641365-68641384 | None:intergenic | 35.0% | |
| AATAACATTGATGAGCTTGC+TGG | - | chr1_4:68641660-68641679 | Msa0180650:CDS | 35.0% | |
| ATTCAAAAGAAAATCCCTGC+AGG | + | chr1_4:68641794-68641813 | None:intergenic | 35.0% | |
| CTATGAACGAATCAATGACT+TGG | - | chr1_4:68641891-68641910 | Msa0180650:intron | 35.0% | |
| CATGCTAATGCTAATTGAGA+AGG | + | chr1_4:68637126-68637145 | None:intergenic | 35.0% | |
| CTTCTCAATTAGCATTAGCA+TGG | - | chr1_4:68637124-68637143 | Msa0180650:CDS | 35.0% | |
| GATAAATAAAGGCAGTACCA+GGG | + | chr1_4:68641993-68642012 | None:intergenic | 35.0% | |
| AGATAAATAAAGGCAGTACC+AGG | + | chr1_4:68641994-68642013 | None:intergenic | 35.0% | |
| !! | AGTGATGGATATGTGAAAGT+AGG | + | chr1_4:68642167-68642186 | None:intergenic | 35.0% |
| TATCCATCACTAACTTTGCT+TGG | - | chr1_4:68642176-68642195 | Msa0180650:intron | 35.0% | |
| TGCAGTATCTACACAGTATA+TGG | + | chr1_4:68642243-68642262 | None:intergenic | 35.0% | |
| TCAGTTTAGTAGTCCCTATA+TGG | + | chr1_4:68642322-68642341 | None:intergenic | 35.0% | |
| GCTTACACAAGAAGATTTGA+AGG | - | chr1_4:68642379-68642398 | Msa0180650:intron | 35.0% | |
| TCTCTATGCAATTACTTTGG+CGG | + | chr1_4:68642494-68642513 | None:intergenic | 35.0% | |
| CAAGTCCCAAGAGTTAAACT+GGG | - | chr1_4:68634784-68634803 | Msa0180650:three_prime_UTR | 40.0% | |
| GGAGAATGAAAGTGGCAATT+TGG | + | chr1_4:68634842-68634861 | None:intergenic | 40.0% | |
| AGCACATGATGACAGTTGAA+GGG | + | chr1_4:68635052-68635071 | None:intergenic | 40.0% | |
| AAGCACATGATGACAGTTGA+AGG | + | chr1_4:68635053-68635072 | None:intergenic | 40.0% | |
| GTCTCATCTCTAACTCATTG+TGG | + | chr1_4:68635444-68635463 | None:intergenic | 40.0% | |
| TTTGTGAAATGCAGGTGTCT+AGG | - | chr1_4:68635608-68635627 | Msa0180650:intron | 40.0% | |
| TTTGGATGTGGAGGATTATC+TGG | - | chr1_4:68635637-68635656 | Msa0180650:intron | 40.0% | |
| CATCCCATTTGTCACATCTA+AGG | + | chr1_4:68635931-68635950 | None:intergenic | 40.0% | |
| !!! | AGCCAATTGAACTTTTTCGC+GGG | + | chr1_4:68636082-68636101 | None:intergenic | 40.0% |
| ! | TGGCGTTACTTTATCTGATG+GGG | - | chr1_4:68636110-68636129 | Msa0180650:CDS | 40.0% |
| ! | TTGGAACTGAAGTGTCAACT+CGG | + | chr1_4:68636233-68636252 | None:intergenic | 40.0% |
| AAGCTTACGGTGTCTTCAAT+TGG | + | chr1_4:68636252-68636271 | None:intergenic | 40.0% | |
| ! | CGACTTGTTTATGAAGATGG+AGG | - | chr1_4:68636353-68636372 | Msa0180650:CDS | 40.0% |
| GATGGAGGAGCTTAAAAAAC+TGG | - | chr1_4:68636368-68636387 | Msa0180650:CDS | 40.0% | |
| GATAAGACATATTGGGCTGT+CGG | - | chr1_4:68636404-68636423 | Msa0180650:CDS | 40.0% | |
| TTGCATTCTTGCAGAGAACT+AGG | - | chr1_4:68636704-68636723 | Msa0180650:CDS | 40.0% | |
| TGCATTCTTGCAGAGAACTA+GGG | - | chr1_4:68636705-68636724 | Msa0180650:CDS | 40.0% | |
| ! | CGGCTAGTTACAAGTAATCA+AGG | - | chr1_4:68636820-68636839 | Msa0180650:CDS | 40.0% |
| TGGGATGCATATTCTGTTAC+AGG | + | chr1_4:68637023-68637042 | None:intergenic | 40.0% | |
| TGTAACAGAATATGCATCCC+AGG | - | chr1_4:68637022-68637041 | Msa0180650:intron | 40.0% | |
| AGATTTACTCCAGTGAACCT+GGG | + | chr1_4:68637042-68637061 | None:intergenic | 40.0% | |
| AATGACATAATCCCTATCCC+CGG | - | chr1_4:68637162-68637181 | Msa0180650:intron | 40.0% | |
| CTTCACTTTAGTAGTCCCTA+TGG | + | chr1_4:68637525-68637544 | None:intergenic | 40.0% | |
| ! | AAGAGAAAAGGGCACAGTTA+AGG | - | chr1_4:68637771-68637790 | Msa0180650:intron | 40.0% |
| ! | AGAGAAAAGGGCACAGTTAA+GGG | - | chr1_4:68637772-68637791 | Msa0180650:intron | 40.0% |
| TGCTACCTATCAACTGGTAT+CGG | - | chr1_4:68638040-68638059 | Msa0180650:intron | 40.0% | |
| ! | GACATAGACGTCTTTGTTGT+CGG | + | chr1_4:68638249-68638268 | None:intergenic | 40.0% |
| AAAGACGTCTATGTCAACCA+TGG | - | chr1_4:68638254-68638273 | Msa0180650:intron | 40.0% | |
| AAGACGTCTATGTCAACCAT+GGG | - | chr1_4:68638255-68638274 | Msa0180650:intron | 40.0% | |
| ! | TAGGTGTCTTTTCACTGATG+TGG | + | chr1_4:68638284-68638303 | None:intergenic | 40.0% |
| CACCATATGTTCTCACTTCT+GGG | - | chr1_4:68638418-68638437 | Msa0180650:intron | 40.0% | |
| AACTTGTGGCTCAAGTAACA+GGG | + | chr1_4:68638512-68638531 | None:intergenic | 40.0% | |
| ! | TAACTTGTGGCTCAAGTAAC+AGG | + | chr1_4:68638513-68638532 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | - | chr1_4:68638563-68638582 | Msa0180650:intron | 40.0% |
| CATTATATATGCAAGGTCCG+GGG | + | chr1_4:68638596-68638615 | None:intergenic | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr1_4:68638597-68638616 | None:intergenic | 40.0% | |
| AGCTGGATGAAGTTCTGTTA+TGG | + | chr1_4:68638779-68638798 | None:intergenic | 40.0% | |
| CTACAGTTCTATGAAGAAGC+TGG | + | chr1_4:68638796-68638815 | None:intergenic | 40.0% | |
| AGCTATTAGCATCATACTCC+TGG | + | chr1_4:68639015-68639034 | None:intergenic | 40.0% | |
| GTTATATTCCCTCTGAGCAT+GGG | + | chr1_4:68639258-68639277 | None:intergenic | 40.0% | |
| GCTAATTGCCACGTCTAAAA+GGG | + | chr1_4:68639686-68639705 | None:intergenic | 40.0% | |
| TGCTAATTGCCACGTCTAAA+AGG | + | chr1_4:68639687-68639706 | None:intergenic | 40.0% | |
| TAGGTCATCAGTATAGTCTC+TGG | + | chr1_4:68639908-68639927 | None:intergenic | 40.0% | |
| !!! | AGCAAAAGTTTTTGGGGTGT+CGG | - | chr1_4:68640120-68640139 | Msa0180650:intron | 40.0% |
| TCAACTTTGCATCTTAGGCA+AGG | - | chr1_4:68640218-68640237 | Msa0180650:CDS | 40.0% | |
| TTTGGATGTGGAGGATTATC+TGG | - | chr1_4:68635637-68635656 | Msa0180650:intron | 40.0% | |
| !!! | AGCCAATTGGACTTTTTTGC+GGG | + | chr1_4:68640898-68640917 | None:intergenic | 40.0% |
| ! | CGTTACTTTATCTGATGGGA+TGG | - | chr1_4:68640929-68640948 | Msa0180650:CDS | 40.0% |
| !!! | ATCTGATGGGATGGTTTTAG+GGG | - | chr1_4:68640938-68640957 | Msa0180650:CDS | 40.0% |
| CACCGAGAATTTACAAGTGT+TGG | + | chr1_4:68641146-68641165 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGCAGGAAAGTCAG+TGG | - | chr1_4:68641498-68641517 | Msa0180650:intron | 40.0% |
| TGAATTAGTTCCATTCCTGC+AGG | - | chr1_4:68641776-68641795 | Msa0180650:intron | 40.0% | |
| GAATTAGTTCCATTCCTGCA+GGG | - | chr1_4:68641777-68641796 | Msa0180650:intron | 40.0% | |
| AAAGAAAATCCCTGCAGGAA+TGG | + | chr1_4:68641789-68641808 | None:intergenic | 40.0% | |
| GCAAGTCCCAAGAGTTAAAC+TGG | - | chr1_4:68634783-68634802 | Msa0180650:three_prime_UTR | 45.0% | |
| GGCTACCCAGTTTAACTCTT+GGG | + | chr1_4:68634792-68634811 | None:intergenic | 45.0% | |
| TGGCTACCCAGTTTAACTCT+TGG | + | chr1_4:68634793-68634812 | None:intergenic | 45.0% | |
| AGAGTTAAACTGGGTAGCCA+TGG | - | chr1_4:68634793-68634812 | Msa0180650:three_prime_UTR | 45.0% | |
| ATAGCTGATCGAGTCGATGA+TGG | + | chr1_4:68635111-68635130 | None:intergenic | 45.0% | |
| TGAAATGCAGGTGTCTAGGT+TGG | - | chr1_4:68635612-68635631 | Msa0180650:intron | 45.0% | |
| GAAATGCAGGTGTCTAGGTT+GGG | - | chr1_4:68635613-68635632 | Msa0180650:intron | 45.0% | |
| ! | TCTAGGTTGGGATTTGGATG+TGG | - | chr1_4:68635625-68635644 | Msa0180650:intron | 45.0% |
| ACATCCATCTTCATGGGAGA+GGG | + | chr1_4:68635677-68635696 | None:intergenic | 45.0% | |
| AACATCCATCTTCATGGGAG+AGG | + | chr1_4:68635678-68635697 | None:intergenic | 45.0% | |
| TCCCCGCGAAAAAGTTCAAT+TGG | - | chr1_4:68636077-68636096 | Msa0180650:CDS | 45.0% | |
| !!! | GCCAATTGAACTTTTTCGCG+GGG | + | chr1_4:68636081-68636100 | None:intergenic | 45.0% |
| ! | AAGGTACCCCTGAATATGTG+AGG | - | chr1_4:68636145-68636164 | Msa0180650:CDS | 45.0% |
| AGGTACCCCTGAATATGTGA+GGG | - | chr1_4:68636146-68636165 | Msa0180650:CDS | 45.0% | |
| AGCACTCCCTCACATATTCA+GGG | + | chr1_4:68636155-68636174 | None:intergenic | 45.0% | |
| TTCAATGTCACGGGACCATA+AGG | + | chr1_4:68636499-68636518 | None:intergenic | 45.0% | |
| CAATTTGTCTACCTGCAGAG+TGG | + | chr1_4:68636534-68636553 | None:intergenic | 45.0% | |
| TCTTGCAGAGAACTAGGGAT+TGG | - | chr1_4:68636710-68636729 | Msa0180650:CDS | 45.0% | |
| ATAGTAGCATATAGCCCCCT+TGG | - | chr1_4:68636734-68636753 | Msa0180650:CDS | 45.0% | |
| !!! | CGGCTTTTTTGCAGGAAAGT+CGG | - | chr1_4:68636760-68636779 | Msa0180650:CDS | 45.0% |
| !!! | CTTTTTTGCAGGAAAGTCGG+TGG | - | chr1_4:68636763-68636782 | Msa0180650:CDS | 45.0% |
| GATAAGGTTCAGGCAAGTTG+TGG | - | chr1_4:68636908-68636927 | Msa0180650:intron | 45.0% | |
| TGGAATTACATCTCTGCCGA+GGG | - | chr1_4:68636928-68636947 | Msa0180650:intron | 45.0% | |
| CTGCAGGGATAATACTACTC+AGG | + | chr1_4:68636972-68636991 | None:intergenic | 45.0% | |
| AATATGCATCCCAGGTTCAC+TGG | - | chr1_4:68637030-68637049 | Msa0180650:intron | 45.0% | |
| CAGATTTACTCCAGTGAACC+TGG | + | chr1_4:68637043-68637062 | None:intergenic | 45.0% | |
| CAGGTTCACTGGAGTAAATC+TGG | - | chr1_4:68637041-68637060 | Msa0180650:intron | 45.0% | |
| ATTAGCATGGCTTCTGCATC+AGG | - | chr1_4:68637137-68637156 | Msa0180650:intron | 45.0% | |
| TTAGCATGGCTTCTGCATCA+GGG | - | chr1_4:68637138-68637157 | Msa0180650:intron | 45.0% | |
| ! | TTAAGACAGTACCGGGGATA+GGG | + | chr1_4:68637176-68637195 | None:intergenic | 45.0% |
| ! | ATTAAGACAGTACCGGGGAT+AGG | + | chr1_4:68637177-68637196 | None:intergenic | 45.0% |
| TTCCTGTTGCAGAAATCGCT+GGG | - | chr1_4:68637618-68637637 | Msa0180650:intron | 45.0% | |
| TTGCTCCGATACCAGTTGAT+AGG | + | chr1_4:68638048-68638067 | None:intergenic | 45.0% | |
| ! | AACTGGTATCGGAGCAATCA+AGG | - | chr1_4:68638051-68638070 | Msa0180650:intron | 45.0% |
| TATCGGAGCAATCAAGGTCT+CGG | - | chr1_4:68638057-68638076 | Msa0180650:intron | 45.0% | |
| !!! | CAAGGTCTCGGTTGTTTTGA+TGG | - | chr1_4:68638069-68638088 | Msa0180650:intron | 45.0% |
| ! | GCAGAGTGTTTGCTTTAGTC+AGG | - | chr1_4:68638196-68638215 | Msa0180650:intron | 45.0% |
| AGGACAACTCGTAGAACGAA+GGG | - | chr1_4:68638216-68638235 | Msa0180650:intron | 45.0% | |
| TTCACTGATGTGGATTCCCA+TGG | + | chr1_4:68638274-68638293 | None:intergenic | 45.0% | |
| CCAGAAGTGAGAACATATGG+TGG | + | chr1_4:68638420-68638439 | None:intergenic | 45.0% | |
| CCACCATATGTTCTCACTTC+TGG | - | chr1_4:68638417-68638436 | Msa0180650:intron | 45.0% | |
| GTCCCAGAAGTGAGAACATA+TGG | + | chr1_4:68638423-68638442 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAACTGGTA+AGG | + | chr1_4:68638625-68638644 | None:intergenic | 45.0% | |
| ! | ATCACTTTAGAGGTTAGGCC+AGG | - | chr1_4:68638994-68639013 | Msa0180650:intron | 45.0% |
| AGTGCTAGTGTGTACTTCTC+TGG | - | chr1_4:68639041-68639060 | Msa0180650:intron | 45.0% | |
| TTTGTAGCAGCACCTTGACT+GGG | + | chr1_4:68639129-68639148 | None:intergenic | 45.0% | |
| ATTTGTAGCAGCACCTTGAC+TGG | + | chr1_4:68639130-68639149 | None:intergenic | 45.0% | |
| GGTTATATTCCCTCTGAGCA+TGG | + | chr1_4:68639259-68639278 | None:intergenic | 45.0% | |
| TAGACGTGGCAATTAGCATG+TGG | - | chr1_4:68639689-68639708 | Msa0180650:CDS | 45.0% | |
| GATCGTGCCATATACACTCA+AGG | + | chr1_4:68639737-68639756 | None:intergenic | 45.0% | |
| !!! | AAAGTTTTTGGGGTGTCGGT+CGG | - | chr1_4:68640124-68640143 | Msa0180650:intron | 45.0% |
| TGGACACTTCAACAGCTCTT+TGG | - | chr1_4:68640170-68640189 | Msa0180650:intron | 45.0% | |
| ACAAGTCCCAAGAGTCAAAC+TGG | - | chr1_4:68640267-68640286 | Msa0180650:CDS | 45.0% | |
| CAAGTCCCAAGAGTCAAACT+GGG | - | chr1_4:68640268-68640287 | Msa0180650:CDS | 45.0% | |
| GTGGTTGACAATAAGGAAGG+AGG | + | chr1_4:68640322-68640341 | None:intergenic | 45.0% | |
| CATAGTGCTTTGTGGAATGC+AGG | - | chr1_4:68640498-68640517 | Msa0180650:intron | 45.0% | |
| TTTGTGGAATGCAGGTGTCT+AGG | - | chr1_4:68640506-68640525 | Msa0180650:intron | 45.0% | |
| TCCCCGCAAAAAAGTCCAAT+TGG | - | chr1_4:68640893-68640912 | Msa0180650:CDS | 45.0% | |
| !!! | GCCAATTGGACTTTTTTGCG+GGG | + | chr1_4:68640897-68640916 | None:intergenic | 45.0% |
| GTCCAATTGGCTACGAAGTT+TGG | - | chr1_4:68640906-68640925 | Msa0180650:CDS | 45.0% | |
| !!! | GGGATGGTTTTAGGGGTAAA+AGG | - | chr1_4:68640945-68640964 | Msa0180650:CDS | 45.0% |
| ! | AAGGTACCCCTGAATATGTG+AGG | - | chr1_4:68636145-68636164 | Msa0180650:CDS | 45.0% |
| AGGTACCCCTGAATATGTGA+GGG | - | chr1_4:68636146-68636165 | Msa0180650:CDS | 45.0% | |
| AGCACTCCCTCACATATTCA+GGG | + | chr1_4:68636155-68636174 | None:intergenic | 45.0% | |
| GACCTCTTTATGGAAGATGG+AGG | - | chr1_4:68641184-68641203 | Msa0180650:CDS | 45.0% | |
| CTCCTCCATCTTCCATAAAG+AGG | + | chr1_4:68641189-68641208 | None:intergenic | 45.0% | |
| TTCAATGTCACGGGACCATA+AGG | + | chr1_4:68636499-68636518 | None:intergenic | 45.0% | |
| TTGTGTACTTGCAGAGAGCT+TGG | - | chr1_4:68641439-68641458 | Msa0180650:intron | 45.0% | |
| ! | AGAGCTTGGCATTGGAATTG+TGG | - | chr1_4:68641453-68641472 | Msa0180650:intron | 45.0% |
| TTTGTCTAGTCAGAGCTTGC+TGG | - | chr1_4:68641528-68641547 | Msa0180650:intron | 45.0% | |
| CATAACAGGCTATGCATCCA+AGG | - | chr1_4:68641833-68641852 | Msa0180650:intron | 45.0% | |
| GCTATGCATCCAAGGTTTAC+AGG | - | chr1_4:68641841-68641860 | Msa0180650:intron | 45.0% | |
| ATTAGCATGGCTTCTGCATC+AGG | - | chr1_4:68637137-68637156 | Msa0180650:intron | 45.0% | |
| TTAGCATGGCTTCTGCATCA+GGG | - | chr1_4:68637138-68637157 | Msa0180650:intron | 45.0% | |
| AACGACATAATCCCTATCCC+TGG | - | chr1_4:68641973-68641992 | Msa0180650:intron | 45.0% | |
| TAAAGGCAGTACCAGGGATA+GGG | + | chr1_4:68641987-68642006 | None:intergenic | 45.0% | |
| ATAAAGGCAGTACCAGGGAT+AGG | + | chr1_4:68641988-68642007 | None:intergenic | 45.0% | |
| GTGCCAAGCAAAGTTAGTGA+TGG | + | chr1_4:68642182-68642201 | None:intergenic | 45.0% | |
| TTCCCGTTGAGGAAATTGCT+GGG | - | chr1_4:68642417-68642436 | Msa0180650:intron | 45.0% | |
| AATTACGATGCCTCCCTAGT+AGG | - | chr1_4:68642719-68642738 | Msa0180650:five_prime_UTR | 45.0% | |
| ACTGGGTAGCCATGGTTTAG+AGG | - | chr1_4:68634801-68634820 | Msa0180650:three_prime_UTR | 50.0% | |
| ! | CAGGTGTCTAGGTTGGGATT+TGG | - | chr1_4:68635619-68635638 | Msa0180650:intron | 50.0% |
| AGGTTGGGATTTGGATGTGG+AGG | - | chr1_4:68635628-68635647 | Msa0180650:intron | 50.0% | |
| CATCCATCTTCATGGGAGAG+GGG | + | chr1_4:68635676-68635695 | None:intergenic | 50.0% | |
| GCACTCCCTCACATATTCAG+GGG | + | chr1_4:68636154-68636173 | None:intergenic | 50.0% | |
| CAGCACTCCCTCACATATTC+AGG | + | chr1_4:68636156-68636175 | None:intergenic | 50.0% | |
| TGCAAAAAAGCCGCAGCCAA+GGG | + | chr1_4:68636753-68636772 | None:intergenic | 50.0% | |
| TTTGCCTAGTCAGAGCGTAC+TGG | - | chr1_4:68636793-68636812 | Msa0180650:CDS | 50.0% | |
| CATACCAGTACGCTCTGACT+AGG | + | chr1_4:68636800-68636819 | None:intergenic | 50.0% | |
| ! | AGTCAGAGCGTACTGGTATG+CGG | - | chr1_4:68636800-68636819 | Msa0180650:CDS | 50.0% |
| GTGGAATTACATCTCTGCCG+AGG | - | chr1_4:68636927-68636946 | Msa0180650:intron | 50.0% | |
| GTTCCTGTTGCAGAAATCGC+TGG | - | chr1_4:68637617-68637636 | Msa0180650:intron | 50.0% | |
| TTCCCAGCGATTTCTGCAAC+AGG | + | chr1_4:68637623-68637642 | None:intergenic | 50.0% | |
| ! | GAAAAGGGCACAGTTAAGGG+TGG | - | chr1_4:68637775-68637794 | Msa0180650:intron | 50.0% |
| GGCACAGTTAAGGGTGGTTA+GGG | - | chr1_4:68637781-68637800 | Msa0180650:intron | 50.0% | |
| GCACAGTTAAGGGTGGTTAG+GGG | - | chr1_4:68637782-68637801 | Msa0180650:intron | 50.0% | |
| CAGGACAACTCGTAGAACGA+AGG | - | chr1_4:68638215-68638234 | Msa0180650:intron | 50.0% | |
| GGGTACCCAGTTTGACTCTT+GGG | + | chr1_4:68640276-68640295 | None:intergenic | 50.0% | |
| TGGGTACCCAGTTTGACTCT+TGG | + | chr1_4:68640277-68640296 | None:intergenic | 50.0% | |
| AGAGTCAAACTGGGTACCCA+AGG | - | chr1_4:68640277-68640296 | Msa0180650:CDS | 50.0% | |
| ACTGGGTACCCAAGGTTTAG+AGG | - | chr1_4:68640285-68640304 | Msa0180650:CDS | 50.0% | |
| TCTAGGCTGGGATTTGGATG+TGG | - | chr1_4:68640523-68640542 | Msa0180650:intron | 50.0% | |
| CATCCATCTTCATGGGAGAG+GGG | + | chr1_4:68635676-68635695 | None:intergenic | 50.0% | |
| GCATCCATCTTCATGGGAGA+GGG | + | chr1_4:68640575-68640594 | None:intergenic | 50.0% | |
| AGCATCCATCTTCATGGGAG+AGG | + | chr1_4:68640576-68640595 | None:intergenic | 50.0% | |
| CGCCAAACTTCGTAGCCAAT+TGG | + | chr1_4:68640911-68640930 | None:intergenic | 50.0% | |
| GCACTCCCTCACATATTCAG+GGG | + | chr1_4:68636154-68636173 | None:intergenic | 50.0% | |
| CAGCACTCCCTCACATATTC+AGG | + | chr1_4:68636156-68636175 | None:intergenic | 50.0% | |
| ! | GCTGTGAAGCTAGTCTCAAG+CGG | - | chr1_4:68640991-68641010 | Msa0180650:CDS | 50.0% |
| ACTTGCAGAGAGCTTGGCAT+TGG | - | chr1_4:68641445-68641464 | Msa0180650:intron | 50.0% | |
| TGCAAAAAAGCCGCGACCAA+GGG | + | chr1_4:68641488-68641507 | None:intergenic | 50.0% | |
| TGCAGGAAAGTCAGTGGTAG+AGG | - | chr1_4:68641504-68641523 | Msa0180650:intron | 50.0% | |
| !! | TTCTGAAGCAGTTCCCGTTG+AGG | - | chr1_4:68642406-68642425 | Msa0180650:intron | 50.0% |
| GTTCCCGTTGAGGAAATTGC+TGG | - | chr1_4:68642416-68642435 | Msa0180650:intron | 50.0% | |
| TCCCGTTGAGGAAATTGCTG+GGG | - | chr1_4:68642418-68642437 | Msa0180650:intron | 50.0% | |
| TCCCCAGCAATTTCCTCAAC+GGG | + | chr1_4:68642422-68642441 | None:intergenic | 50.0% | |
| CTCCCCAGCAATTTCCTCAA+CGG | + | chr1_4:68642423-68642442 | None:intergenic | 50.0% | |
| GCTGTGAAGCGAGTCTCAAG+CGG | - | chr1_4:68636172-68636191 | Msa0180650:intron | 55.0% | |
| CAAAAAAGCCGCAGCCAAGG+GGG | + | chr1_4:68636751-68636770 | None:intergenic | 55.0% | |
| GCAAAAAAGCCGCAGCCAAG+GGG | + | chr1_4:68636752-68636771 | None:intergenic | 55.0% | |
| CTGCAAAAAAGCCGCAGCCA+AGG | + | chr1_4:68636754-68636773 | None:intergenic | 55.0% | |
| !!! | CTTGGCTGCGGCTTTTTTGC+AGG | - | chr1_4:68636752-68636771 | Msa0180650:CDS | 55.0% |
| TGCAGGAAAGTCGGTGGTAG+AGG | - | chr1_4:68636769-68636788 | Msa0180650:CDS | 55.0% | |
| GGGCACAGTTAAGGGTGGTT+AGG | - | chr1_4:68637780-68637799 | Msa0180650:intron | 55.0% | |
| AAGGTCCGGGGTTCAAATCC+CGG | + | chr1_4:68638584-68638603 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAAC+TGG | + | chr1_4:68638630-68638649 | None:intergenic | 55.0% | |
| CCAGTTGAGCTAAGCTCACG+AGG | - | chr1_4:68638627-68638646 | Msa0180650:intron | 55.0% | |
| TTTGGCAAGCCCATGCTCAG+AGG | - | chr1_4:68639246-68639265 | Msa0180650:intron | 55.0% | |
| TTGGCAAGCCCATGCTCAGA+GGG | - | chr1_4:68639247-68639266 | Msa0180650:intron | 55.0% | |
| !! | TGGCAGTAGTGCTGACTGAG+TGG | - | chr1_4:68640150-68640169 | Msa0180650:intron | 55.0% |
| TGGAATGCAGGTGTCTAGGC+TGG | - | chr1_4:68640510-68640529 | Msa0180650:intron | 55.0% | |
| GGAATGCAGGTGTCTAGGCT+GGG | - | chr1_4:68640511-68640530 | Msa0180650:intron | 55.0% | |
| CAGGTGTCTAGGCTGGGATT+TGG | - | chr1_4:68640517-68640536 | Msa0180650:intron | 55.0% | |
| AGGCTGGGATTTGGATGTGG+AGG | - | chr1_4:68640526-68640545 | Msa0180650:intron | 55.0% | |
| ATTGTGGCATACAGCCCCCT+TGG | - | chr1_4:68641469-68641488 | Msa0180650:intron | 55.0% | |
| CAAAAAAGCCGCGACCAAGG+GGG | + | chr1_4:68641486-68641505 | None:intergenic | 55.0% | |
| GCAAAAAAGCCGCGACCAAG+GGG | + | chr1_4:68641487-68641506 | None:intergenic | 55.0% | |
| CTGCAAAAAAGCCGCGACCA+AGG | + | chr1_4:68641489-68641508 | None:intergenic | 55.0% | |
| !!! | CTTGGTCGCGGCTTTTTTGC+AGG | - | chr1_4:68641487-68641506 | Msa0180650:intron | 55.0% |
| GCTCCCCTCTCCCATGAAGA+TGG | - | chr1_4:68635670-68635689 | Msa0180650:intron | 60.0% | |
| ATTGGGCTGTCGGACGCTAG+TGG | - | chr1_4:68636414-68636433 | Msa0180650:CDS | 60.0% | |
| GCATATAGCCCCCTTGGCTG+CGG | - | chr1_4:68636740-68636759 | Msa0180650:CDS | 60.0% | |
| !! | TTTGGGGTGTCGGTCGGTAC+TGG | - | chr1_4:68640130-68640149 | Msa0180650:intron | 60.0% |
| GCTCCCCTCTCCCATGAAGA+TGG | - | chr1_4:68635670-68635689 | Msa0180650:intron | 60.0% | |
| GGTGGCCGGGATTTGAACCC+CGG | - | chr1_4:68638576-68638595 | Msa0180650:intron | 65.0% | |
| GCATACAGCCCCCTTGGTCG+CGG | - | chr1_4:68641475-68641494 | Msa0180650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 68634644 | 68642743 | 68634644 | ID=Msa0180650;Name=Msa0180650 |
| chr1_4 | mRNA | 68634644 | 68642743 | 68634644 | ID=Msa0180650-mRNA-1;Parent=Msa0180650;Name=Msa0180650-mRNA-1;_AED=0.28;_eAED=0.28;_QI=122|0.84|0.85|1|1|1|14|241|687 |
| chr1_4 | exon | 68634644 | 68635060 | 68634644 | ID=Msa0180650-mRNA-1:exon:22711;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68635393 | 68635546 | 68635393 | ID=Msa0180650-mRNA-1:exon:22710;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68635838 | 68635934 | 68635838 | ID=Msa0180650-mRNA-1:exon:22709;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68636015 | 68636187 | 68636015 | ID=Msa0180650-mRNA-1:exon:22708;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68636305 | 68636508 | 68636305 | ID=Msa0180650-mRNA-1:exon:22707;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68636697 | 68636867 | 68636697 | ID=Msa0180650-mRNA-1:exon:22706;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68637089 | 68637152 | 68637089 | ID=Msa0180650-mRNA-1:exon:22705;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68639688 | 68639859 | 68639688 | ID=Msa0180650-mRNA-1:exon:22704;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68640204 | 68640357 | 68640204 | ID=Msa0180650-mRNA-1:exon:22703;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68640573 | 68640669 | 68640573 | ID=Msa0180650-mRNA-1:exon:22702;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68640846 | 68641018 | 68640846 | ID=Msa0180650-mRNA-1:exon:22701;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68641124 | 68641324 | 68641124 | ID=Msa0180650-mRNA-1:exon:22700;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68641595 | 68641765 | 68641595 | ID=Msa0180650-mRNA-1:exon:22699;Parent=Msa0180650-mRNA-1 |
| chr1_4 | exon | 68642565 | 68642743 | 68642565 | ID=Msa0180650-mRNA-1:exon:22698;Parent=Msa0180650-mRNA-1 |
| chr1_4 | five_prime_UTR | 68642622 | 68642743 | 68642622 | ID=Msa0180650-mRNA-1:five_prime_utr;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68642565 | 68642621 | 68642565 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68641595 | 68641765 | 68641595 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68641124 | 68641324 | 68641124 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68640846 | 68641018 | 68640846 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68640573 | 68640669 | 68640573 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68640204 | 68640357 | 68640204 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68639688 | 68639859 | 68639688 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68637089 | 68637152 | 68637089 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68636697 | 68636867 | 68636697 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68636305 | 68636508 | 68636305 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68636015 | 68636187 | 68636015 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68635838 | 68635934 | 68635838 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68635393 | 68635546 | 68635393 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | CDS | 68634885 | 68635060 | 68634885 | ID=Msa0180650-mRNA-1:cds;Parent=Msa0180650-mRNA-1 |
| chr1_4 | three_prime_UTR | 68634644 | 68634884 | 68634644 | ID=Msa0180650-mRNA-1:three_prime_utr;Parent=Msa0180650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
