AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040920 MtrunA17_Chr1g0206201 79.070 86 18 0 8 93 193 278 7.78e-41 135
Msa0040920 MtrunA17_Chr1g0206231 70.833 72 19 1 22 93 207 276 5.58e-29 108
Msa0040920 MtrunA17_Chr1g0206171 44.828 87 39 4 4 88 44 123 2.82e-16 68.6
Msa0040920 MtrunA17_Chr1g0206561 44.928 69 34 3 13 80 183 248 2.44e-13 63.9
Msa0040920 MtrunA17_Chr3g0119041 52.174 46 22 0 22 67 215 260 1.87e-12 61.6
Msa0040920 MtrunA17_Chr6g0474901 39.726 73 36 3 17 87 191 257 2.88e-11 58.2
Msa0040920 MtrunA17_Chr1g0206351 40.000 55 30 2 17 69 201 254 3.15e-11 57.8
Msa0040920 MtrunA17_Chr6g0475001 39.726 73 36 3 17 87 198 264 5.09e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040920 AT4G11530.1 41.818 55 31 1 22 76 202 255 3.22e-11 58.2

Find 162 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAAGTTCCTTCTGTATT+AGG 0.201899 1_1:-71180778 None:intergenic
GTTTGTTGCTGCTTCAATTT+TGG 0.214473 1_1:-71179656 None:intergenic
TTGTCATAGGAAATCTTTAA+AGG 0.235633 1_1:+71178129 Msa0040920:intron
GCCATTGTAGGCCTGTCTTC+TGG 0.250041 1_1:-71180856 None:intergenic
TATTGTAGGCTTGGACAAAA+TGG 0.256160 1_1:+71180725 Msa0040920:intron
GTTCCATTACGCTTAAAATA+TGG 0.265357 1_1:-71180937 None:intergenic
ATTGGAATGGTAAGTGTTAT+TGG 0.276130 1_1:-71178377 None:intergenic
CATCGGTTTGTTATGTGTTC+AGG 0.281773 1_1:+71180828 Msa0040920:three_prime_UTR
TTCGAATTTAACACCACAAC+TGG 0.283448 1_1:-71178956 None:intergenic
ACAATAAGGTAAAAGAAAAT+TGG 0.283831 1_1:-71178265 None:intergenic
GTCAAATTTAAGACCACAAC+TGG 0.290467 1_1:-71176298 None:intergenic
GCCTCTTCAACAACATTCTC+TGG 0.290607 1_1:+71178719 Msa0040920:three_prime_UTR
AGGATAGGCAAAGGTGGATT+TGG 0.303207 1_1:+71179697 Msa0040920:three_prime_UTR
TCTGGCATTGTTACTACTAT+TGG 0.312012 1_1:-71178428 None:intergenic
TATCCATGCATTGCATATTC+TGG 0.313918 1_1:-71180514 None:intergenic
ATATTATCTGGTGTGATGTT+GGG 0.320130 1_1:-71180976 None:intergenic
GCATACTTTGTACCAAACTA+TGG 0.325812 1_1:-71178602 None:intergenic
ACAAGGCACACAATACTTCT+TGG 0.335561 1_1:+71178992 Msa0040920:three_prime_UTR
GTGGAATCACTTATATTATC+TGG 0.345961 1_1:-71180988 None:intergenic
ACCACAACTGGGATATAATA+TGG 0.346251 1_1:-71178944 None:intergenic
AACGAGGCAGCAAATGCTTT+TGG 0.359973 1_1:+71176106 None:intergenic
TCGTTCATGGAAGAGAGTTC+TGG 0.364918 1_1:-71178673 None:intergenic
GAAAGTACATGCACAATTGT+AGG 0.387636 1_1:+71180359 Msa0040920:three_prime_UTR
AAACGGAAGGAACCCATTCT+TGG 0.391362 1_1:-71178229 None:intergenic
TATTATCAATTGCAGCTTGT+AGG 0.393127 1_1:-71178309 None:intergenic
CTAGTTCCCATTGCCAAGAA+TGG 0.393845 1_1:+71178216 Msa0040920:three_prime_UTR
GCAAACACCACTTGAACTAA+TGG 0.396201 1_1:+71180753 Msa0040920:three_prime_UTR
TAATGGAACTGAAGAAAATA+TGG 0.396369 1_1:+71180951 Msa0040920:three_prime_UTR
AATGCAACTGTAGCCATTGT+AGG 0.403161 1_1:-71180868 None:intergenic
ACCGCAACTTCTTGTCCATC+TGG 0.417345 1_1:-71179823 None:intergenic
ATATCAAAACACTCCTAGAT+TGG 0.420017 1_1:+71178398 Msa0040920:three_prime_UTR
ACAGATTTGCTGCAGAAAAC+AGG 0.424147 1_1:+71179677 Msa0040920:three_prime_UTR
TTAAAATATGGTGGTTCAAG+AGG 0.428934 1_1:-71180925 None:intergenic
AGTTGCTGCAGAGGAAAATC+TGG 0.431060 1_1:+71178916 Msa0040920:three_prime_UTR
CAGCAAAAGAAGCCATAGTT+TGG 0.432849 1_1:+71178590 Msa0040920:three_prime_UTR
AGTTGTTGCAGAGGAAAATC+TGG 0.433501 1_1:+71176258 Msa0040920:CDS
ATCCCAAGACTAAAAGCATC+AGG 0.436178 1_1:-71179445 None:intergenic
TATATTATCTGGTGTGATGT+TGG 0.436670 1_1:-71180977 None:intergenic
AAATCCGATGTGTATAGTTT+CGG 0.437304 1_1:+71180547 Msa0040920:three_prime_UTR
AAGGAGAGCAATGAACAATA+AGG 0.437951 1_1:-71178279 None:intergenic
TGTGTATAGTTTCGGAATCA+TGG 0.438378 1_1:+71180555 Msa0040920:three_prime_UTR
ATAAGCGAAAACTATTACCT+TGG 0.438553 1_1:+71180156 Msa0040920:three_prime_UTR
CAGTTCTCTGCAGATAGGTA+TGG 0.440730 1_1:-71178853 None:intergenic
ATGGTTCTAGAGATTATTAG+TGG 0.448383 1_1:+71180574 Msa0040920:three_prime_UTR
TTTCCTCTGCAACAACTAGT+TGG 0.448722 1_1:-71176252 None:intergenic
AGCATCAGGGAAACAACAAT+TGG 0.452143 1_1:-71179431 None:intergenic
AACTGTGGCGTTGTAGTATC+TGG 0.456294 1_1:-71178446 None:intergenic
TAGAGATTATTAGTGGAAAG+AGG 0.456814 1_1:+71180581 Msa0040920:three_prime_UTR
TGGAAATGATGTTACCACTT+TGG 0.457686 1_1:+71179612 Msa0040920:three_prime_UTR
TAGATTTCTGTGTTGAAGCT+TGG 0.457697 1_1:-71179911 None:intergenic
CATTCTTGGCAATGGGAACT+AGG 0.458269 1_1:-71178215 None:intergenic
TATTATCTGGTGTGATGTTG+GGG 0.458386 1_1:-71180975 None:intergenic
TAGTTCCCATTGCCAAGAAT+GGG 0.460899 1_1:+71178217 Msa0040920:three_prime_UTR
TATTGTGTGCCTTGTGGAAT+GGG 0.468211 1_1:-71178984 None:intergenic
TTTAAACCTGGTGGGTCTGA+AGG 0.468506 1_1:-71179042 None:intergenic
AGCAAATGCATCGGCTAAGT+TGG 0.469688 1_1:+71178771 Msa0040920:three_prime_UTR
CAGAGTGTGTTGATGACATC+CGG 0.470326 1_1:+71180623 Msa0040920:three_prime_UTR
CAAGGCACACAATACTTCTT+GGG 0.470459 1_1:+71178993 Msa0040920:three_prime_UTR
TTCTATCACGCATGACTGGC+AGG 0.470581 1_1:-71178536 None:intergenic
CTGCTTCTATCACGCATGAC+TGG 0.474173 1_1:-71178540 None:intergenic
GCTGAAGGACGAGGAATTGT+TGG 0.475505 1_1:-71176378 None:intergenic
GGACGAGGAATTGTTGGTAG+TGG 0.477190 1_1:-71176372 None:intergenic
CCTCGTCCTTCAGCTCCACC+AGG 0.479666 1_1:+71176387 Msa0040920:CDS
AGGAACCCATTCTTGGCAAT+GGG 0.480111 1_1:-71178222 None:intergenic
ATTGTAGGCTTGGACAAAAT+GGG 0.485810 1_1:+71180726 Msa0040920:intron
GTCTTATCGAGGGAAGAATT+CGG 0.498538 1_1:-71181028 None:intergenic
CTATCTAACAAGATATTGCT+AGG 0.503364 1_1:-71180272 None:intergenic
ATTATTAGTGGAAAGAGGAA+AGG 0.506883 1_1:+71180586 Msa0040920:three_prime_UTR
ATCAATTGCAGCTTGTAGGA+TGG 0.507847 1_1:-71178305 None:intergenic
ATAGAAAAGAACAAAAGAAT+CGG 0.510759 1_1:+71179483 Msa0040920:three_prime_UTR
AGCTGCAGTTCTCTGCAGAT+AGG 0.511198 1_1:-71178858 None:intergenic
TATTGGAGGAGAGCCAATCT+AGG 0.512050 1_1:-71178411 None:intergenic
AAGGAACCCATTCTTGGCAA+TGG 0.512285 1_1:-71178223 None:intergenic
GGCATTGTTACTACTATTGG+AGG 0.513608 1_1:-71178425 None:intergenic
AGAAATCTAGTGAGATTACT+AGG 0.515511 1_1:+71179925 Msa0040920:three_prime_UTR
CCCAGAGAATGTTGTTGAAG+AGG 0.520635 1_1:-71178720 None:intergenic
AACACTGTGAACACTGTCTA+CGG 0.521328 1_1:+71178478 Msa0040920:three_prime_UTR
CTTAAACCTGGTGGAGCTGA+AGG 0.523421 1_1:-71176393 None:intergenic
TCAATTGCAGCTTGTAGGAT+GGG 0.524432 1_1:-71178304 None:intergenic
TATGACAAGTATAGCGATGT+TGG 0.525368 1_1:-71178181 None:intergenic
TATCTTCAGAAAACTGTAGC+TGG 0.526039 1_1:+71176202 Msa0040920:CDS
TTTCCTCTGCAGCAACTGGT+TGG 0.529882 1_1:-71178910 None:intergenic
CGAGGAATTGTTGGTAGTGG+AGG 0.532611 1_1:-71176369 None:intergenic
TTCAGGAAAATCCAGAAGAC+AGG 0.535795 1_1:+71180845 Msa0040920:three_prime_UTR
ATTCAGGGAATTCTTCCAGA+TGG 0.539710 1_1:+71179808 Msa0040920:intron
TCAACACACTCTGATTCAGC+TGG 0.540119 1_1:-71180613 None:intergenic
TATTGCTAGGTTTCAGATCA+CGG 0.540276 1_1:-71180259 None:intergenic
GGCACACAACAATATTGCAT+GGG 0.543056 1_1:+71176338 Msa0040920:CDS
AAGGGCGAGGACTTGTGAGT+GGG 0.543654 1_1:-71179023 None:intergenic
GACAAGAAGTTGCGGTGAAG+AGG 0.544260 1_1:+71179830 Msa0040920:three_prime_UTR
TAAAATATGGTGGTTCAAGA+GGG 0.545696 1_1:-71180924 None:intergenic
TTCAAGAGGGGATGGCAAGT+TGG 0.547410 1_1:-71180911 None:intergenic
GGAATTGTTGGTAGTGGAGG+TGG 0.547575 1_1:-71176366 None:intergenic
CCATTACGCTTAAAATATGG+TGG 0.551523 1_1:-71180934 None:intergenic
AGGCACACAACAATATTGCA+TGG 0.552101 1_1:+71176337 Msa0040920:CDS
GTTCCAACCAGTTGCTGCAG+AGG 0.552737 1_1:+71178907 Msa0040920:three_prime_UTR
GGTCATAGTGACTCCGTTGG+TGG 0.552886 1_1:-71181007 None:intergenic
CCTGGTGGAGCTGAAGGACG+AGG 0.555733 1_1:-71176387 None:intergenic
CCTCTTCAACAACATTCTCT+GGG 0.556560 1_1:+71178720 Msa0040920:three_prime_UTR
GAAGGGCGAGGACTTGTGAG+TGG 0.560075 1_1:-71179024 None:intergenic
AAAGATTATGTGGGTGATGT+TGG 0.560620 1_1:+71178697 Msa0040920:three_prime_UTR
TCTCCAGAATATGCAATGCA+TGG 0.562450 1_1:+71180511 Msa0040920:three_prime_UTR
ACTAGTTGGAATTTCTGCTA+TGG 0.568000 1_1:-71176238 None:intergenic
CAACATCAGAAGATCATCAA+AGG 0.569879 1_1:+71180182 Msa0040920:three_prime_UTR
TTAAACCTGGTGGGTCTGAA+GGG 0.570122 1_1:-71179041 None:intergenic
TTAGGATCCATTAGTTCAAG+TGG 0.572928 1_1:-71180760 None:intergenic
ATTCCAACTAGTTGTTGCAG+AGG 0.574657 1_1:+71176249 Msa0040920:CDS
AGTTCTCTGCAGATAGGTAT+GGG 0.579295 1_1:-71178852 None:intergenic
CCTCGCCCTTCAGACCCACC+AGG 0.581973 1_1:+71179036 Msa0040920:three_prime_UTR
AGTGTTGTTGCTTGCAACTG+TGG 0.586381 1_1:-71178461 None:intergenic
CATGGAGATAAAGAATTCCA+CGG 0.591344 1_1:-71180211 None:intergenic
ATTCTTCCCTCGATAAGACA+TGG 0.595690 1_1:+71181032 Msa0040920:three_prime_UTR
ACTGGTTGGAACCTCTGCTA+TGG 0.596910 1_1:-71178896 None:intergenic
ATCTTCTGATGTTGAGACCA+AGG 0.597725 1_1:-71180173 None:intergenic
GACAAGTATAGCGATGTTGG+TGG 0.597862 1_1:-71178178 None:intergenic
CTAATGGATCCTAATACAGA+AGG 0.598446 1_1:+71180769 Msa0040920:three_prime_UTR
CCTGGTGGGTCTGAAGGGCG+AGG 0.600837 1_1:-71179036 None:intergenic
TATGGTGGTTCAAGAGGGGA+TGG 0.601087 1_1:-71180919 None:intergenic
TCCAGAAGACAGGCCTACAA+TGG 0.601588 1_1:+71180855 Msa0040920:three_prime_UTR
ACACTAACTATATTTGAGAT+CGG 0.602332 1_1:+71179404 Msa0040920:three_prime_UTR
GCAGCTTGTAGGATGGGAGA+AGG 0.604094 1_1:-71178298 None:intergenic
GTATTGTGTGCCTTGTGGAA+TGG 0.604633 1_1:-71178985 None:intergenic
AGGGCGAGGACTTGTGAGTG+GGG 0.606487 1_1:-71179022 None:intergenic
TTGTTGTGTGCCTTGTGGAA+AGG 0.606551 1_1:-71176327 None:intergenic
ACCATATTATATCCCAGTTG+TGG 0.607016 1_1:+71178943 Msa0040920:three_prime_UTR
CAATATTGTTGTGTGCCTTG+TGG 0.608456 1_1:-71176332 None:intergenic
TATCTGCAGAGAACTGCAGC+TGG 0.612662 1_1:+71178860 Msa0040920:three_prime_UTR
TCGAATTTAACACCACAACT+GGG 0.615576 1_1:-71178955 None:intergenic
AATATAAGTGATTCCACCAA+CGG 0.616456 1_1:+71180994 Msa0040920:three_prime_UTR
TTTCACCCATGTCTTATCGA+GGG 0.618401 1_1:-71181038 None:intergenic
TCCAGATGGACAAGAAGTTG+CGG 0.618429 1_1:+71179822 Msa0040920:three_prime_UTR
GGGCGAGGACTTGTGAGTGG+GGG 0.619995 1_1:-71179021 None:intergenic
GAAAACAGGATAGGCAAAGG+TGG 0.620021 1_1:+71179691 Msa0040920:three_prime_UTR
CGAATTATACCCATTCCACA+AGG 0.623382 1_1:+71178975 Msa0040920:three_prime_UTR
TTTGCTGCAGAAAACAGGAT+AGG 0.624611 1_1:+71179682 Msa0040920:three_prime_UTR
ATGGAGATAAAGAATTCCAC+GGG 0.628109 1_1:-71180210 None:intergenic
TGGATTTGGAGAAGTCTACA+AGG 0.633559 1_1:+71179711 Msa0040920:three_prime_UTR
AAGTGAAGCAGCAAATGCAT+CGG 0.635383 1_1:+71178762 Msa0040920:three_prime_UTR
TTCGGTCATAGTGACTCCGT+TGG 0.637622 1_1:-71181010 None:intergenic
AGTTGGTTGAAGAACTGTTG+AGG 0.637739 1_1:-71180894 None:intergenic
AAATTGCAACGATTCCAAAG+TGG 0.644840 1_1:-71179626 None:intergenic
ATCATCAAAGGAATTGCCCG+TGG 0.645661 1_1:+71180194 Msa0040920:three_prime_UTR
TGACTTAAATCCTTTCCACA+AGG 0.646760 1_1:+71176317 Msa0040920:CDS
TTCTTCCCTCGATAAGACAT+GGG 0.652563 1_1:+71181033 Msa0040920:three_prime_UTR
TGCTGCAGAGGAAAATCTGG+AGG 0.653183 1_1:+71178919 Msa0040920:three_prime_UTR
GCAGAAAACAGGATAGGCAA+AGG 0.653281 1_1:+71179688 Msa0040920:three_prime_UTR
AAAATATGGTGGTTCAAGAG+GGG 0.653993 1_1:-71180923 None:intergenic
AAGAAGTATTGTGTGCCTTG+TGG 0.654151 1_1:-71178990 None:intergenic
TCCCAAGACTAAAAGCATCA+GGG 0.657835 1_1:-71179444 None:intergenic
ATTATCTGGTGTGATGTTGG+GGG 0.666878 1_1:-71180974 None:intergenic
ATGCTTTCTATAACTGCACA+AGG 0.668961 1_1:+71178338 Msa0040920:three_prime_UTR
TCTTAGTGATGCCATAGCAG+AGG 0.669376 1_1:+71178885 Msa0040920:three_prime_UTR
GTCATCAAATACATCCACAT+CGG 0.673857 1_1:+71180811 Msa0040920:three_prime_UTR
TTACATGTGCTTATTGACCA+TGG 0.677265 1_1:+71181095 Msa0040920:three_prime_UTR
CTTACAAGAAGCTCTAGACA+AGG 0.681995 1_1:+71179853 Msa0040920:three_prime_UTR
GGTCAGTGTCTCTAACACAA+AGG 0.684765 1_1:-71178507 None:intergenic
TCAAATTTAAGACCACAACT+GGG 0.687830 1_1:-71176297 None:intergenic
GCACACAACAATATTGCATG+GGG 0.693943 1_1:+71176339 Msa0040920:CDS
GAACACATAACAAACCGATG+TGG 0.694529 1_1:-71180825 None:intergenic
TGTTGCAGAGGAAAATCTGG+AGG 0.695939 1_1:+71176261 Msa0040920:CDS
TCTCTGCAGATAGGTATGGG+AGG 0.702988 1_1:-71178849 None:intergenic
GATTCCGAAACTATACACAT+CGG 0.704339 1_1:-71180551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAAAATATATATGA+AGG - chr1_1:71176430-71176449 None:intergenic 10.0%
!! TTTAAAAAGAAAAGAAAAAA+TGG + chr1_1:71176883-71176902 Msa0040920:intron 10.0%
!!! ACACTATAATTATTTTTTTT+TGG - chr1_1:71177396-71177415 None:intergenic 10.0%
!!! AACACTATAATTATTTTTTT+TGG - chr1_1:71177397-71177416 None:intergenic 10.0%
!! TAAACAAAAAAATAAGAAAA+AGG + chr1_1:71177551-71177570 Msa0040920:intron 10.0%
!! AAACAAAAAAATAAGAAAAA+GGG + chr1_1:71177552-71177571 Msa0040920:intron 10.0%
!! ATATAAATATATATTCAATG+TGG + chr1_1:71177836-71177855 Msa0040920:intron 10.0%
!!! ATATATCTTTTGTAATAACT+TGG + chr1_1:71176554-71176573 Msa0040920:intron 15.0%
!! AACAAAAAAATAAGAAAAAG+GGG + chr1_1:71177553-71177572 Msa0040920:intron 15.0%
!!! CTATTTATATTTTCATTAGA+GGG - chr1_1:71179260-71179279 None:intergenic 15.0%
!!! ACTATTTATATTTTCATTAG+AGG - chr1_1:71179261-71179280 None:intergenic 15.0%
!! AATGAAAATATAAATAGTTC+AGG + chr1_1:71179263-71179282 Msa0040920:intron 15.0%
!! AAGTTTGAATATAAGTTATA+TGG - chr1_1:71179581-71179600 None:intergenic 15.0%
!! AATTAACAAATGAATATTGT+AGG + chr1_1:71180711-71180730 Msa0040920:intron 15.0%
!!! AAACAAAACCATATAGTTTT+TGG - chr1_1:71176168-71176187 None:intergenic 20.0%
!!! AAAAACTATATGGTTTTGTT+TGG + chr1_1:71176167-71176186 Msa0040920:CDS 20.0%
!!! TCATCAATATTTTAAGAACT+AGG + chr1_1:71176848-71176867 Msa0040920:intron 20.0%
!! ATGTTTATTTGAAGAAGATA+GGG + chr1_1:71177110-71177129 Msa0040920:intron 20.0%
!! ATATTTGCGTATTTGATTAA+GGG - chr1_1:71177153-71177172 None:intergenic 20.0%
!! AATATTTGCGTATTTGATTA+AGG - chr1_1:71177154-71177173 None:intergenic 20.0%
!!! TGAGTTTTATGAATTTTGTA+TGG - chr1_1:71177756-71177775 None:intergenic 20.0%
!!! TCTCTTCTAAAATAAACAAA+CGG + chr1_1:71177789-71177808 Msa0040920:intron 20.0%
!!! CAATTATAAAAGTACAATCT+TGG - chr1_1:71177894-71177913 None:intergenic 20.0%
!! ACAATAAGGTAAAAGAAAAT+TGG - chr1_1:71178268-71178287 None:intergenic 20.0%
!!! AAATAAGAAAGTGTATAAGA+GGG - chr1_1:71179079-71179098 None:intergenic 20.0%
!! TTTATCAAAGAGATATTTGT+TGG + chr1_1:71179291-71179310 Msa0040920:intron 20.0%
!! ATAGAAAAGAACAAAAGAAT+CGG + chr1_1:71179483-71179502 Msa0040920:three_prime_UTR 20.0%
!! AATATAAGTTATATGGCTAT+AGG - chr1_1:71179574-71179593 None:intergenic 20.0%
!!! AACTTCTTTATTGTTATTCA+GGG + chr1_1:71179793-71179812 Msa0040920:intron 20.0%
!!! AGTCTTGATTACTTTTTATT+TGG + chr1_1:71180003-71180022 Msa0040920:three_prime_UTR 20.0%
!! ATATTATAACTTTAAGCTAG+AGG + chr1_1:71180046-71180065 Msa0040920:intron 20.0%
!!! TAATCTAGTTCAAATAAGAA+TGG - chr1_1:71180101-71180120 None:intergenic 20.0%
!!! ATCTACAATATTAGTTTCTT+TGG - chr1_1:71180132-71180151 None:intergenic 20.0%
!!! AATCCAAAAATATCAGATTT+TGG + chr1_1:71180302-71180321 Msa0040920:three_prime_UTR 20.0%
!!! ATTCCAAAATCTGATATTTT+TGG - chr1_1:71180308-71180327 None:intergenic 20.0%
!!! AAAAATATCAGATTTTGGAA+TGG + chr1_1:71180307-71180326 Msa0040920:three_prime_UTR 20.0%
!! ATAAAAAAAACATGAAAGTC+TGG - chr1_1:71180475-71180494 None:intergenic 20.0%
!!! CATGTTTTTTTTATATGTAG+TGG + chr1_1:71180481-71180500 Msa0040920:intron 20.0%
!!! AAAGTTCTAAAAAATTACCA+TGG - chr1_1:71181115-71181134 None:intergenic 20.0%
!!! ATGGTAATTTTTTAGAACTT+TGG + chr1_1:71181114-71181133 Msa0040920:three_prime_UTR 20.0%
!! GATTTTCAAAATCTTAAACC+TGG - chr1_1:71176408-71176427 None:intergenic 25.0%
! TTATACTACTTGAGTGAATT+AGG + chr1_1:71176717-71176736 Msa0040920:intron 25.0%
! TATACTACTTGAGTGAATTA+GGG + chr1_1:71176718-71176737 Msa0040920:intron 25.0%
!! ATATTTTCCTTTGTTGAGTA+TGG - chr1_1:71176821-71176840 None:intergenic 25.0%
!!! AATATTTTAAGAACTAGGAG+AGG + chr1_1:71176853-71176872 Msa0040920:intron 25.0%
!!! ATATTTTAAGAACTAGGAGA+GGG + chr1_1:71176854-71176873 Msa0040920:intron 25.0%
! AAAGAAAAGAAAAAATGGCT+AGG + chr1_1:71176888-71176907 Msa0040920:intron 25.0%
! AAAATCCTGATTAATCAAGT+TGG + chr1_1:71176967-71176986 Msa0040920:intron 25.0%
! TTCTATATTCCATTCTATCA+AGG - chr1_1:71177046-71177065 None:intergenic 25.0%
!! AATAAACATCTTTGATGGAT+TGG - chr1_1:71177099-71177118 None:intergenic 25.0%
! CTTCAAATAAACATCTTTGA+TGG - chr1_1:71177104-71177123 None:intergenic 25.0%
! GATGTTTATTTGAAGAAGAT+AGG + chr1_1:71177109-71177128 Msa0040920:intron 25.0%
! TGTTTATTTGAAGAAGATAG+GGG + chr1_1:71177111-71177130 Msa0040920:intron 25.0%
! TAATTATCTCTGCTGAAAAT+AGG - chr1_1:71177288-71177307 None:intergenic 25.0%
! ACGGAAATCTATAATTTGAA+TGG + chr1_1:71177646-71177665 Msa0040920:intron 25.0%
! GATAGCAACATGAATAAAAA+AGG + chr1_1:71177997-71178016 Msa0040920:intron 25.0%
!! TAACCAAATCTTTTTGTCAT+AGG + chr1_1:71178116-71178135 Msa0040920:intron 25.0%
! TTTCCTATGACAAAAAGATT+TGG - chr1_1:71178122-71178141 None:intergenic 25.0%
! TTGTCATAGGAAATCTTTAA+AGG + chr1_1:71178129-71178148 Msa0040920:intron 25.0%
! TTGGAAGTAAAAACAGAAAA+CGG - chr1_1:71178249-71178268 None:intergenic 25.0%
! ATGAACGAAAAAGATTATGT+GGG + chr1_1:71178688-71178707 Msa0040920:three_prime_UTR 25.0%
! ACAGAAAACCAAAAACTATA+TGG + chr1_1:71178814-71178833 Msa0040920:three_prime_UTR 25.0%
!! GATAATCACAATTTTAAACC+TGG - chr1_1:71179057-71179076 None:intergenic 25.0%
!! GAAATAAGAAAGTGTATAAG+AGG - chr1_1:71179080-71179099 None:intergenic 25.0%
!! TATATTTTCATTAGAGGGTT+AGG - chr1_1:71179255-71179274 None:intergenic 25.0%
!! ACACTAACTATATTTGAGAT+CGG + chr1_1:71179404-71179423 Msa0040920:three_prime_UTR 25.0%
! ACAAGGTAAATATATCAACT+AGG + chr1_1:71179728-71179747 Msa0040920:intron 25.0%
!! CAACTTCTTTATTGTTATTC+AGG + chr1_1:71179792-71179811 Msa0040920:intron 25.0%
!! AAGTAATCAAGACTTTTGTT+TGG - chr1_1:71179997-71180016 None:intergenic 25.0%
! TCTTGATAAATGAATTACCA+TGG + chr1_1:71180073-71180092 Msa0040920:intron 25.0%
! TTGTAGGTATAAAATACATG+CGG - chr1_1:71180428-71180447 None:intergenic 25.0%
!!! TTTTTTTACTCACATATCTC+CGG - chr1_1:71180645-71180664 None:intergenic 25.0%
! TAATGGAACTGAAGAAAATA+TGG + chr1_1:71180951-71180970 Msa0040920:three_prime_UTR 25.0%
ACAGACAACCAAAAACTATA+TGG + chr1_1:71176157-71176176 Msa0040920:intron 30.0%
! TCAAATTTAAGACCACAACT+GGG - chr1_1:71176300-71176319 None:intergenic 30.0%
TTTCAAAATCTTAAACCTGG+TGG - chr1_1:71176405-71176424 None:intergenic 30.0%
TTGCTAGATATAGTAGTCAT+GGG - chr1_1:71176529-71176548 None:intergenic 30.0%
TGCTATATAGACATAGAAGA+GGG - chr1_1:71176797-71176816 None:intergenic 30.0%
! CTTTTCCAACTTGATTAATC+AGG - chr1_1:71176975-71176994 None:intergenic 30.0%
TATATTCCATTCTATCAAGG+AGG - chr1_1:71177043-71177062 None:intergenic 30.0%
ATCAAATACGCAAATATTCG+TGG + chr1_1:71177156-71177175 Msa0040920:intron 30.0%
AAGAAGAAAACTGATCTTAG+GGG - chr1_1:71177195-71177214 None:intergenic 30.0%
GAAGAAGAAAACTGATCTTA+GGG - chr1_1:71177196-71177215 None:intergenic 30.0%
AGAAGAAGAAAACTGATCTT+AGG - chr1_1:71177197-71177216 None:intergenic 30.0%
TGCATCATCATAGGATATTA+TGG + chr1_1:71177676-71177695 Msa0040920:intron 30.0%
TTGCTTGAGGACAAAAATTT+CGG - chr1_1:71177865-71177884 None:intergenic 30.0%
! GTACTTTTATAATTGCAGTG+AGG + chr1_1:71177899-71177918 Msa0040920:intron 30.0%
! GTTTTCACAAAGCTTTTTGA+AGG + chr1_1:71177946-71177965 Msa0040920:intron 30.0%
AAGTAAAAACAGAAAACGGA+AGG - chr1_1:71178245-71178264 None:intergenic 30.0%
TATTATCAATTGCAGCTTGT+AGG - chr1_1:71178312-71178331 None:intergenic 30.0%
ATTGGAATGGTAAGTGTTAT+TGG - chr1_1:71178380-71178399 None:intergenic 30.0%
!!! ATCTAGGAGTGTTTTGATAT+TGG - chr1_1:71178398-71178417 None:intergenic 30.0%
ATATCAAAACACTCCTAGAT+TGG + chr1_1:71178398-71178417 Msa0040920:three_prime_UTR 30.0%
!! CACATAATCTTTTTCGTTCA+TGG - chr1_1:71178689-71178708 None:intergenic 30.0%
CATGAACGAAAAAGATTATG+TGG + chr1_1:71178687-71178706 Msa0040920:three_prime_UTR 30.0%
!!! ATAGTTTTTGGTTTTCTGTG+AGG - chr1_1:71178813-71178832 None:intergenic 30.0%
! AAGCATAGCCATATAGTTTT+TGG - chr1_1:71178825-71178844 None:intergenic 30.0%
AAAAACTATATGGCTATGCT+TGG + chr1_1:71178824-71178843 Msa0040920:three_prime_UTR 30.0%
! ATCACAATTTTAAACCTGGT+GGG - chr1_1:71179053-71179072 None:intergenic 30.0%
! AATCACAATTTTAAACCTGG+TGG - chr1_1:71179054-71179073 None:intergenic 30.0%
! CTGTGTTATTGTTTCAGAAA+TGG - chr1_1:71179108-71179127 None:intergenic 30.0%
ATGCTAGATATAGTAGTCAT+GGG - chr1_1:71179167-71179186 None:intergenic 30.0%
AACTTAGTACATTGTGAACA+TGG + chr1_1:71179206-71179225 Msa0040920:intron 30.0%
!! CATCTTCTCATTTTTCTTGA+TGG + chr1_1:71179327-71179346 Msa0040920:intron 30.0%
! TTCAAACTTGTTCTTGTAGT+TGG + chr1_1:71179592-71179611 Msa0040920:intron 30.0%
TGCAGTAGAGTTTAAAAATG+AGG + chr1_1:71179876-71179895 Msa0040920:three_prime_UTR 30.0%
AGAAATCTAGTGAGATTACT+AGG + chr1_1:71179925-71179944 Msa0040920:three_prime_UTR 30.0%
! GAGATTACTAGGATTTTGTT+TGG + chr1_1:71179936-71179955 Msa0040920:three_prime_UTR 30.0%
TTCAAATAAGAATGGATCCA+TGG - chr1_1:71180093-71180112 None:intergenic 30.0%
! AGGTAATAGTTTTCGCTTAT+GGG - chr1_1:71180156-71180175 None:intergenic 30.0%
! AAGGTAATAGTTTTCGCTTA+TGG - chr1_1:71180157-71180176 None:intergenic 30.0%
ATAAGCGAAAACTATTACCT+TGG + chr1_1:71180156-71180175 Msa0040920:three_prime_UTR 30.0%
CTATCTAACAAGATATTGCT+AGG - chr1_1:71180275-71180294 None:intergenic 30.0%
TGTAGGTATAAAATACATGC+GGG - chr1_1:71180427-71180446 None:intergenic 30.0%
AAATCCGATGTGTATAGTTT+CGG + chr1_1:71180547-71180566 Msa0040920:three_prime_UTR 30.0%
!! ATGGTTCTAGAGATTATTAG+TGG + chr1_1:71180574-71180593 Msa0040920:three_prime_UTR 30.0%
TAGAGATTATTAGTGGAAAG+AGG + chr1_1:71180581-71180600 Msa0040920:three_prime_UTR 30.0%
ATTATTAGTGGAAAGAGGAA+AGG + chr1_1:71180586-71180605 Msa0040920:three_prime_UTR 30.0%
ACAAATGAATATTGTAGGCT+TGG + chr1_1:71180716-71180735 Msa0040920:intron 30.0%
GAATAAGTTCCTTCTGTATT+AGG - chr1_1:71180781-71180800 None:intergenic 30.0%
TAAAATATGGTGGTTCAAGA+GGG - chr1_1:71180927-71180946 None:intergenic 30.0%
TTAAAATATGGTGGTTCAAG+AGG - chr1_1:71180928-71180947 None:intergenic 30.0%
GTTCCATTACGCTTAAAATA+TGG - chr1_1:71180940-71180959 None:intergenic 30.0%
ATATTATCTGGTGTGATGTT+GGG - chr1_1:71180979-71180998 None:intergenic 30.0%
TATATTATCTGGTGTGATGT+TGG - chr1_1:71180980-71180999 None:intergenic 30.0%
GTGGAATCACTTATATTATC+TGG - chr1_1:71180991-71181010 None:intergenic 30.0%
AATATAAGTGATTCCACCAA+CGG + chr1_1:71180994-71181013 Msa0040920:three_prime_UTR 30.0%
! GAAAACAGTTTTCAGTGTAT+CGG + chr1_1:71181057-71181076 Msa0040920:three_prime_UTR 30.0%
!! CAGTTTTCTGAAGATAGGTT+GGG - chr1_1:71176198-71176217 None:intergenic 35.0%
!! ACAGTTTTCTGAAGATAGGT+TGG - chr1_1:71176199-71176218 None:intergenic 35.0%
!! AGCTACAGTTTTCTGAAGAT+AGG - chr1_1:71176203-71176222 None:intergenic 35.0%
TATCTTCAGAAAACTGTAGC+TGG + chr1_1:71176202-71176221 Msa0040920:CDS 35.0%
ACTAGTTGGAATTTCTGCTA+TGG - chr1_1:71176241-71176260 None:intergenic 35.0%
! GCAATATTTTATCCCAGTTG+TGG + chr1_1:71176285-71176304 Msa0040920:CDS 35.0%
! GTCAAATTTAAGACCACAAC+TGG - chr1_1:71176301-71176320 None:intergenic 35.0%
TGACTTAAATCCTTTCCACA+AGG + chr1_1:71176317-71176336 Msa0040920:CDS 35.0%
! CATGGGTTGACAGTAATATA+TGG - chr1_1:71176512-71176531 None:intergenic 35.0%
CTTGCTAGATATAGTAGTCA+TGG - chr1_1:71176530-71176549 None:intergenic 35.0%
CCTAACATGCTTAGAATGAT+AGG - chr1_1:71176619-71176638 None:intergenic 35.0%
CCTATCATTCTAAGCATGTT+AGG + chr1_1:71176616-71176635 Msa0040920:intron 35.0%
CTGCTATATAGACATAGAAG+AGG - chr1_1:71176798-71176817 None:intergenic 35.0%
! GCTAGGTGTTATGTTTCAAT+TGG + chr1_1:71176905-71176924 Msa0040920:intron 35.0%
! AGGTGTTATGTTTCAATTGG+AGG + chr1_1:71176908-71176927 Msa0040920:intron 35.0%
! AGAATGTACAGTGTTGTTGA+AGG - chr1_1:71177015-71177034 None:intergenic 35.0%
TAACTACCTCCTTGATAGAA+TGG + chr1_1:71177034-71177053 Msa0040920:intron 35.0%
TTTGCGTATTTGATTAAGGG+TGG - chr1_1:71177150-71177169 None:intergenic 35.0%
ATTGATGAGTCTCTTGAGAT+TGG + chr1_1:71177252-71177271 Msa0040920:intron 35.0%
AGAATTTGAATGGCAACGAA+TGG + chr1_1:71177594-71177613 Msa0040920:intron 35.0%
!! CAACGAATGGACTGAATTTA+CGG + chr1_1:71177627-71177646 Msa0040920:intron 35.0%
!! TTCACAAAGCTTTTTGAAGG+TGG + chr1_1:71177949-71177968 Msa0040920:intron 35.0%
GGTGCAGGGTATAAAATTAT+TGG + chr1_1:71177970-71177989 Msa0040920:intron 35.0%
GCAGGGTATAAAATTATTGG+TGG + chr1_1:71177973-71177992 Msa0040920:intron 35.0%
TTGCTGTAAAGACTGAATCA+AGG + chr1_1:71178025-71178044 Msa0040920:intron 35.0%
TGCTGTAAAGACTGAATCAA+GGG + chr1_1:71178026-71178045 Msa0040920:intron 35.0%
TGAAGAAATACCTAGTGTGT+TGG + chr1_1:71178057-71178076 Msa0040920:intron 35.0%
GAAGAAATACCTAGTGTGTT+GGG + chr1_1:71178058-71178077 Msa0040920:intron 35.0%
TTATATTAGCCCAACACACT+AGG - chr1_1:71178070-71178089 None:intergenic 35.0%
TATGACAAGTATAGCGATGT+TGG - chr1_1:71178184-71178203 None:intergenic 35.0%
AAGGAGAGCAATGAACAATA+AGG - chr1_1:71178282-71178301 None:intergenic 35.0%
ATGCTTTCTATAACTGCACA+AGG + chr1_1:71178338-71178357 Msa0040920:three_prime_UTR 35.0%
!!! GGAGTGTTTTGATATTGGAA+TGG - chr1_1:71178393-71178412 None:intergenic 35.0%
TCTGGCATTGTTACTACTAT+TGG - chr1_1:71178431-71178450 None:intergenic 35.0%
GCATACTTTGTACCAAACTA+TGG - chr1_1:71178605-71178624 None:intergenic 35.0%
AAAGATTATGTGGGTGATGT+TGG + chr1_1:71178697-71178716 Msa0040920:three_prime_UTR 35.0%
ACCATATTATATCCCAGTTG+TGG + chr1_1:71178943-71178962 Msa0040920:three_prime_UTR 35.0%
ACCACAACTGGGATATAATA+TGG - chr1_1:71178947-71178966 None:intergenic 35.0%
TCGAATTTAACACCACAACT+GGG - chr1_1:71178958-71178977 None:intergenic 35.0%
TTCGAATTTAACACCACAAC+TGG - chr1_1:71178959-71178978 None:intergenic 35.0%
! CATGGGTTGACAGTAATATA+TGG - chr1_1:71176512-71176531 None:intergenic 35.0%
CATGCTAGATATAGTAGTCA+TGG - chr1_1:71179168-71179187 None:intergenic 35.0%
GAGGGTTAGGAATAGATTAT+TGG - chr1_1:71179242-71179261 None:intergenic 35.0%
TGGAGACTGAAAATAACACA+AGG + chr1_1:71179347-71179366 Msa0040920:intron 35.0%
TACTGATATTGATGCAGGAA+AGG + chr1_1:71179370-71179389 Msa0040920:intron 35.0%
ACTGATATTGATGCAGGAAA+GGG + chr1_1:71179371-71179390 Msa0040920:intron 35.0%
TCTCAAAGAAAGCTGTAATG+TGG + chr1_1:71179514-71179533 Msa0040920:intron 35.0%
TGGAAATGATGTTACCACTT+TGG + chr1_1:71179612-71179631 Msa0040920:three_prime_UTR 35.0%
AAATTGCAACGATTCCAAAG+TGG - chr1_1:71179629-71179648 None:intergenic 35.0%
!! GTTTGTTGCTGCTTCAATTT+TGG - chr1_1:71179659-71179678 None:intergenic 35.0%
TAGATTTCTGTGTTGAAGCT+TGG - chr1_1:71179914-71179933 None:intergenic 35.0%
CAACATCAGAAGATCATCAA+AGG + chr1_1:71180182-71180201 Msa0040920:three_prime_UTR 35.0%
ATGGAGATAAAGAATTCCAC+GGG - chr1_1:71180213-71180232 None:intergenic 35.0%
CATGGAGATAAAGAATTCCA+CGG - chr1_1:71180214-71180233 None:intergenic 35.0%
!! GATCACGGTGTATTATTTTG+AGG - chr1_1:71180247-71180266 None:intergenic 35.0%
TATTGCTAGGTTTCAGATCA+CGG - chr1_1:71180262-71180281 None:intergenic 35.0%
! GAAAGTACATGCACAATTGT+AGG + chr1_1:71180359-71180378 Msa0040920:three_prime_UTR 35.0%
! CGTCAGTGATAATGATTTGT+AGG - chr1_1:71180444-71180463 None:intergenic 35.0%
TATCCATGCATTGCATATTC+TGG - chr1_1:71180517-71180536 None:intergenic 35.0%
GATTCCGAAACTATACACAT+CGG - chr1_1:71180554-71180573 None:intergenic 35.0%
TGTGTATAGTTTCGGAATCA+TGG + chr1_1:71180555-71180574 Msa0040920:three_prime_UTR 35.0%
TATTGTAGGCTTGGACAAAA+TGG + chr1_1:71180725-71180744 Msa0040920:intron 35.0%
ATTGTAGGCTTGGACAAAAT+GGG + chr1_1:71180726-71180745 Msa0040920:intron 35.0%
TTAGGATCCATTAGTTCAAG+TGG - chr1_1:71180763-71180782 None:intergenic 35.0%
! CTAATGGATCCTAATACAGA+AGG + chr1_1:71180769-71180788 Msa0040920:three_prime_UTR 35.0%
GTCATCAAATACATCCACAT+CGG + chr1_1:71180811-71180830 Msa0040920:three_prime_UTR 35.0%
AAAATATGGTGGTTCAAGAG+GGG - chr1_1:71180926-71180945 None:intergenic 35.0%
CCATTACGCTTAAAATATGG+TGG - chr1_1:71180937-71180956 None:intergenic 35.0%
!! CCACCATATTTTAAGCGTAA+TGG + chr1_1:71180934-71180953 Msa0040920:three_prime_UTR 35.0%
TATTATCTGGTGTGATGTTG+GGG - chr1_1:71180978-71180997 None:intergenic 35.0%
TTACATGTGCTTATTGACCA+TGG + chr1_1:71181095-71181114 Msa0040920:three_prime_UTR 35.0%
ATTCCAACTAGTTGTTGCAG+AGG + chr1_1:71176249-71176268 Msa0040920:CDS 40.0%
TTTCCTCTGCAACAACTAGT+TGG - chr1_1:71176255-71176274 None:intergenic 40.0%
AGTTGTTGCAGAGGAAAATC+TGG + chr1_1:71176258-71176277 Msa0040920:CDS 40.0%
CAATATTGTTGTGTGCCTTG+TGG - chr1_1:71176335-71176354 None:intergenic 40.0%
AGGCACACAACAATATTGCA+TGG + chr1_1:71176337-71176356 Msa0040920:CDS 40.0%
GGCACACAACAATATTGCAT+GGG + chr1_1:71176338-71176357 Msa0040920:CDS 40.0%
GCACACAACAATATTGCATG+GGG + chr1_1:71176339-71176358 Msa0040920:CDS 40.0%
TAGACATAGAAGAGGGACAA+GGG - chr1_1:71176790-71176809 None:intergenic 40.0%
ATAGACATAGAAGAGGGACA+AGG - chr1_1:71176791-71176810 None:intergenic 40.0%
ATAGCAGCCATACTCAACAA+AGG + chr1_1:71176811-71176830 Msa0040920:intron 40.0%
TTCATGTATCCCCTTCTCTT+GGG - chr1_1:71176934-71176953 None:intergenic 40.0%
ATTCATGTATCCCCTTCTCT+TGG - chr1_1:71176935-71176954 None:intergenic 40.0%
GAGAAGGGGATACATGAATT+TGG + chr1_1:71176936-71176955 Msa0040920:intron 40.0%
TTGAAGAAGATAGGGGAATC+AGG + chr1_1:71177118-71177137 Msa0040920:intron 40.0%
CAATCTGAAAACCAAGTGTG+TGG + chr1_1:71177223-71177242 Msa0040920:intron 40.0%
CACACTGTGGAGAATTTGAA+TGG + chr1_1:71177584-71177603 Msa0040920:intron 40.0%
ATTGCAGTGAGGTAATGAAG+TGG + chr1_1:71177910-71177929 Msa0040920:intron 40.0%
TTGCAGTGAGGTAATGAAGT+GGG + chr1_1:71177911-71177930 Msa0040920:intron 40.0%
TAGTTCCCATTGCCAAGAAT+GGG + chr1_1:71178217-71178236 Msa0040920:three_prime_UTR 40.0%
TCAATTGCAGCTTGTAGGAT+GGG - chr1_1:71178307-71178326 None:intergenic 40.0%
ATCAATTGCAGCTTGTAGGA+TGG - chr1_1:71178308-71178327 None:intergenic 40.0%
GGCATTGTTACTACTATTGG+AGG - chr1_1:71178428-71178447 None:intergenic 40.0%
AACACTGTGAACACTGTCTA+CGG + chr1_1:71178478-71178497 Msa0040920:three_prime_UTR 40.0%
! AACTATGGCTTCTTTTGCTG+TGG - chr1_1:71178590-71178609 None:intergenic 40.0%
CAGCAAAAGAAGCCATAGTT+TGG + chr1_1:71178590-71178609 Msa0040920:three_prime_UTR 40.0%
CCTCTTCAACAACATTCTCT+GGG + chr1_1:71178720-71178739 Msa0040920:three_prime_UTR 40.0%
AAGTGAAGCAGCAAATGCAT+CGG + chr1_1:71178762-71178781 Msa0040920:three_prime_UTR 40.0%
AGTTCTCTGCAGATAGGTAT+GGG - chr1_1:71178855-71178874 None:intergenic 40.0%
CGAATTATACCCATTCCACA+AGG + chr1_1:71178975-71178994 Msa0040920:three_prime_UTR 40.0%
TATTGTGTGCCTTGTGGAAT+GGG - chr1_1:71178987-71179006 None:intergenic 40.0%
!! AAGAAGTATTGTGTGCCTTG+TGG - chr1_1:71178993-71179012 None:intergenic 40.0%
ACAAGGCACACAATACTTCT+TGG + chr1_1:71178992-71179011 Msa0040920:three_prime_UTR 40.0%
CAAGGCACACAATACTTCTT+GGG + chr1_1:71178993-71179012 Msa0040920:three_prime_UTR 40.0%
!! CAAGGTACTGATATTGATGC+AGG + chr1_1:71179365-71179384 Msa0040920:intron 40.0%
AGCATCAGGGAAACAACAAT+TGG - chr1_1:71179434-71179453 None:intergenic 40.0%
! TTCCCTGATGCTTTTAGTCT+TGG + chr1_1:71179442-71179461 Msa0040920:three_prime_UTR 40.0%
!! TCCCTGATGCTTTTAGTCTT+GGG + chr1_1:71179443-71179462 Msa0040920:three_prime_UTR 40.0%
!! TCCCAAGACTAAAAGCATCA+GGG - chr1_1:71179447-71179466 None:intergenic 40.0%
!! ATCCCAAGACTAAAAGCATC+AGG - chr1_1:71179448-71179467 None:intergenic 40.0%
!! ACAGATTTGCTGCAGAAAAC+AGG + chr1_1:71179677-71179696 Msa0040920:three_prime_UTR 40.0%
TTTGCTGCAGAAAACAGGAT+AGG + chr1_1:71179682-71179701 Msa0040920:three_prime_UTR 40.0%
TGGATTTGGAGAAGTCTACA+AGG + chr1_1:71179711-71179730 Msa0040920:three_prime_UTR 40.0%
ATTCAGGGAATTCTTCCAGA+TGG + chr1_1:71179808-71179827 Msa0040920:intron 40.0%
!! CTTACAAGAAGCTCTAGACA+AGG + chr1_1:71179853-71179872 Msa0040920:three_prime_UTR 40.0%
ATCTTCTGATGTTGAGACCA+AGG - chr1_1:71180176-71180195 None:intergenic 40.0%
!!! TTTTGAGGCGAGAATCTTCA+TGG - chr1_1:71180232-71180251 None:intergenic 40.0%
TCTCCAGAATATGCAATGCA+TGG + chr1_1:71180511-71180530 Msa0040920:three_prime_UTR 40.0%
GCAAACACCACTTGAACTAA+TGG + chr1_1:71180753-71180772 Msa0040920:three_prime_UTR 40.0%
GAACACATAACAAACCGATG+TGG - chr1_1:71180828-71180847 None:intergenic 40.0%
!! CATCGGTTTGTTATGTGTTC+AGG + chr1_1:71180828-71180847 Msa0040920:three_prime_UTR 40.0%
TTCAGGAAAATCCAGAAGAC+AGG + chr1_1:71180845-71180864 Msa0040920:three_prime_UTR 40.0%
AATGCAACTGTAGCCATTGT+AGG - chr1_1:71180871-71180890 None:intergenic 40.0%
AGTTGGTTGAAGAACTGTTG+AGG - chr1_1:71180897-71180916 None:intergenic 40.0%
ATTATCTGGTGTGATGTTGG+GGG - chr1_1:71180977-71180996 None:intergenic 40.0%
GTCTTATCGAGGGAAGAATT+CGG - chr1_1:71181031-71181050 None:intergenic 40.0%
ATTCTTCCCTCGATAAGACA+TGG + chr1_1:71181032-71181051 Msa0040920:three_prime_UTR 40.0%
TTCTTCCCTCGATAAGACAT+GGG + chr1_1:71181033-71181052 Msa0040920:three_prime_UTR 40.0%
TTTCACCCATGTCTTATCGA+GGG - chr1_1:71181041-71181060 None:intergenic 40.0%
! TTTTCACCCATGTCTTATCG+AGG - chr1_1:71181042-71181061 None:intergenic 40.0%
TGTTGCAGAGGAAAATCTGG+AGG + chr1_1:71176261-71176280 Msa0040920:CDS 45.0%
TTGTTGTGTGCCTTGTGGAA+AGG - chr1_1:71176330-71176349 None:intergenic 45.0%
AGACATAGAAGAGGGACAAG+GGG - chr1_1:71176789-71176808 None:intergenic 45.0%
TCAATCATACGCCACACACT+TGG - chr1_1:71177237-71177256 None:intergenic 45.0%
TGGCAACGAATGACAACGAA+TGG + chr1_1:71177614-71177633 Msa0040920:intron 45.0%
GGCAACGAATGCATCATCAT+AGG + chr1_1:71177667-71177686 Msa0040920:intron 45.0%
!!! ATCTTGGCTGCTTTTGCTTG+AGG - chr1_1:71177878-71177897 None:intergenic 45.0%
!! AAGCTTTTTGAAGGTGGTGC+AGG + chr1_1:71177955-71177974 Msa0040920:intron 45.0%
!! AGCTTTTTGAAGGTGGTGCA+GGG + chr1_1:71177956-71177975 Msa0040920:intron 45.0%
GACAAGTATAGCGATGTTGG+TGG - chr1_1:71178181-71178200 None:intergenic 45.0%
CATTCTTGGCAATGGGAACT+AGG - chr1_1:71178218-71178237 None:intergenic 45.0%
CTAGTTCCCATTGCCAAGAA+TGG + chr1_1:71178216-71178235 Msa0040920:three_prime_UTR 45.0%
AGGAACCCATTCTTGGCAAT+GGG - chr1_1:71178225-71178244 None:intergenic 45.0%
AAGGAACCCATTCTTGGCAA+TGG - chr1_1:71178226-71178245 None:intergenic 45.0%
AAACGGAAGGAACCCATTCT+TGG - chr1_1:71178232-71178251 None:intergenic 45.0%
TATTGGAGGAGAGCCAATCT+AGG - chr1_1:71178414-71178433 None:intergenic 45.0%
AACTGTGGCGTTGTAGTATC+TGG - chr1_1:71178449-71178468 None:intergenic 45.0%
! AGTGTTGTTGCTTGCAACTG+TGG - chr1_1:71178464-71178483 None:intergenic 45.0%
GGTCAGTGTCTCTAACACAA+AGG - chr1_1:71178510-71178529 None:intergenic 45.0%
!!! GAGTTCTGGACTTTTCTCCA+CGG - chr1_1:71178662-71178681 None:intergenic 45.0%
TCGTTCATGGAAGAGAGTTC+TGG - chr1_1:71178676-71178695 None:intergenic 45.0%
GCCTCTTCAACAACATTCTC+TGG + chr1_1:71178719-71178738 Msa0040920:three_prime_UTR 45.0%
CCCAGAGAATGTTGTTGAAG+AGG - chr1_1:71178723-71178742 None:intergenic 45.0%
!! AGCAAATGCATCGGCTAAGT+TGG + chr1_1:71178771-71178790 Msa0040920:three_prime_UTR 45.0%
CAGTTCTCTGCAGATAGGTA+TGG - chr1_1:71178856-71178875 None:intergenic 45.0%
TCTTAGTGATGCCATAGCAG+AGG + chr1_1:71178885-71178904 Msa0040920:three_prime_UTR 45.0%
! AGATTTTCCTCTGCAGCAAC+TGG - chr1_1:71178917-71178936 None:intergenic 45.0%
AGTTGCTGCAGAGGAAAATC+TGG + chr1_1:71178916-71178935 Msa0040920:three_prime_UTR 45.0%
GTATTGTGTGCCTTGTGGAA+TGG - chr1_1:71178988-71179007 None:intergenic 45.0%
! TTAAACCTGGTGGGTCTGAA+GGG - chr1_1:71179044-71179063 None:intergenic 45.0%
! TTTAAACCTGGTGGGTCTGA+AGG - chr1_1:71179045-71179064 None:intergenic 45.0%
GCAGAAAACAGGATAGGCAA+AGG + chr1_1:71179688-71179707 Msa0040920:three_prime_UTR 45.0%
GAAAACAGGATAGGCAAAGG+TGG + chr1_1:71179691-71179710 Msa0040920:three_prime_UTR 45.0%
! AGGATAGGCAAAGGTGGATT+TGG + chr1_1:71179697-71179716 Msa0040920:three_prime_UTR 45.0%
TCCAGATGGACAAGAAGTTG+CGG + chr1_1:71179822-71179841 Msa0040920:three_prime_UTR 45.0%
ATCATCAAAGGAATTGCCCG+TGG + chr1_1:71180194-71180213 Msa0040920:three_prime_UTR 45.0%
!! CAGAGTGTGTTGATGACATC+CGG + chr1_1:71180623-71180642 Msa0040920:three_prime_UTR 45.0%
!! GGAATTGTTGGTAGTGGAGG+TGG - chr1_1:71176369-71176388 None:intergenic 50.0%
!! CGAGGAATTGTTGGTAGTGG+AGG - chr1_1:71176372-71176391 None:intergenic 50.0%
! GGACGAGGAATTGTTGGTAG+TGG - chr1_1:71176375-71176394 None:intergenic 50.0%
GCTGAAGGACGAGGAATTGT+TGG - chr1_1:71176381-71176400 None:intergenic 50.0%
CTTAAACCTGGTGGAGCTGA+AGG - chr1_1:71176396-71176415 None:intergenic 50.0%
TCAATTGGAGGCCCAAGAGA+AGG + chr1_1:71176920-71176939 Msa0040920:intron 50.0%
CAATTGGAGGCCCAAGAGAA+GGG + chr1_1:71176921-71176940 Msa0040920:intron 50.0%
AATTGGAGGCCCAAGAGAAG+GGG + chr1_1:71176922-71176941 Msa0040920:intron 50.0%
AGGGGCTAAATTGCACACTG+TGG + chr1_1:71177571-71177590 Msa0040920:intron 50.0%
! CGCATGACTGGCAGGTTTTA+GGG - chr1_1:71178531-71178550 None:intergenic 50.0%
! ACGCATGACTGGCAGGTTTT+AGG - chr1_1:71178532-71178551 None:intergenic 50.0%
TTCTATCACGCATGACTGGC+AGG - chr1_1:71178539-71178558 None:intergenic 50.0%
CTGCTTCTATCACGCATGAC+TGG - chr1_1:71178543-71178562 None:intergenic 50.0%
! TCGACACTTCTTTTCCACCG+TGG + chr1_1:71178642-71178661 Msa0040920:three_prime_UTR 50.0%
! TTCTGGACTTTTCTCCACGG+TGG - chr1_1:71178659-71178678 None:intergenic 50.0%
TCTCTGCAGATAGGTATGGG+AGG - chr1_1:71178852-71178871 None:intergenic 50.0%
AGCTGCAGTTCTCTGCAGAT+AGG - chr1_1:71178861-71178880 None:intergenic 50.0%
TATCTGCAGAGAACTGCAGC+TGG + chr1_1:71178860-71178879 Msa0040920:three_prime_UTR 50.0%
ACTGGTTGGAACCTCTGCTA+TGG - chr1_1:71178899-71178918 None:intergenic 50.0%
TTTCCTCTGCAGCAACTGGT+TGG - chr1_1:71178913-71178932 None:intergenic 50.0%
TGCTGCAGAGGAAAATCTGG+AGG + chr1_1:71178919-71178938 Msa0040920:three_prime_UTR 50.0%
ACCGCAACTTCTTGTCCATC+TGG - chr1_1:71179826-71179845 None:intergenic 50.0%
GACAAGAAGTTGCGGTGAAG+AGG + chr1_1:71179830-71179849 Msa0040920:three_prime_UTR 50.0%
TCCAGAAGACAGGCCTACAA+TGG + chr1_1:71180855-71180874 Msa0040920:three_prime_UTR 50.0%
TTCAAGAGGGGATGGCAAGT+TGG - chr1_1:71180914-71180933 None:intergenic 50.0%
TATGGTGGTTCAAGAGGGGA+TGG - chr1_1:71180922-71180941 None:intergenic 50.0%
TTCGGTCATAGTGACTCCGT+TGG - chr1_1:71181013-71181032 None:intergenic 50.0%
ATAGAAGAGGGACAAGGGGC+GGG - chr1_1:71176785-71176804 None:intergenic 55.0%
CATAGAAGAGGGACAAGGGG+CGG - chr1_1:71176786-71176805 None:intergenic 55.0%
GCAGCTTGTAGGATGGGAGA+AGG - chr1_1:71178301-71178320 None:intergenic 55.0%
GTTCCAACCAGTTGCTGCAG+AGG + chr1_1:71178907-71178926 Msa0040920:three_prime_UTR 55.0%
AAGGGCGAGGACTTGTGAGT+GGG - chr1_1:71179026-71179045 None:intergenic 55.0%
GCCATTGTAGGCCTGTCTTC+TGG - chr1_1:71180859-71180878 None:intergenic 55.0%
GGTCATAGTGACTCCGTTGG+TGG - chr1_1:71181010-71181029 None:intergenic 55.0%
TAGAAGAGGGACAAGGGGCG+GGG - chr1_1:71176784-71176803 None:intergenic 60.0%
AGGGCGAGGACTTGTGAGTG+GGG - chr1_1:71179025-71179044 None:intergenic 60.0%
GAAGGGCGAGGACTTGTGAG+TGG - chr1_1:71179027-71179046 None:intergenic 60.0%
CCTGGTGGAGCTGAAGGACG+AGG - chr1_1:71176390-71176409 None:intergenic 65.0%
CCTCGTCCTTCAGCTCCACC+AGG + chr1_1:71176387-71176406 Msa0040920:CDS 65.0%
GGGCGAGGACTTGTGAGTGG+GGG - chr1_1:71179024-71179043 None:intergenic 65.0%
AAGAGGGACAAGGGGCGGGG+TGG - chr1_1:71176781-71176800 None:intergenic 70.0%
! CCTGGTGGGTCTGAAGGGCG+AGG - chr1_1:71179039-71179058 None:intergenic 70.0%
CCTCGCCCTTCAGACCCACC+AGG + chr1_1:71179036-71179055 Msa0040920:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71176119 71181144 71176119 ID=Msa0040920;Name=Msa0040920
chr1_1 mRNA 71176119 71181144 71176119 ID=Msa0040920-mRNA-1;Parent=Msa0040920;Name=Msa0040920-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0.75|0.66|1|0.75|0.66|9|2184|95
chr1_1 exon 71176119 71176147 71176119 ID=Msa0040920-mRNA-1:exon:23514;Parent=Msa0040920-mRNA-1
chr1_1 exon 71176161 71176408 71176161 ID=Msa0040920-mRNA-1:exon:23515;Parent=Msa0040920-mRNA-1
chr1_1 exon 71178138 71179057 71178138 ID=Msa0040920-mRNA-1:exon:23516;Parent=Msa0040920-mRNA-1
chr1_1 exon 71179387 71179527 71179387 ID=Msa0040920-mRNA-1:exon:23517;Parent=Msa0040920-mRNA-1
chr1_1 exon 71179611 71179732 71179611 ID=Msa0040920-mRNA-1:exon:23518;Parent=Msa0040920-mRNA-1
chr1_1 exon 71179814 71180024 71179814 ID=Msa0040920-mRNA-1:exon:23519;Parent=Msa0040920-mRNA-1
chr1_1 exon 71180150 71180387 71180150 ID=Msa0040920-mRNA-1:exon:23520;Parent=Msa0040920-mRNA-1
chr1_1 exon 71180501 71180651 71180501 ID=Msa0040920-mRNA-1:exon:23521;Parent=Msa0040920-mRNA-1
chr1_1 exon 71180733 71181144 71180733 ID=Msa0040920-mRNA-1:exon:23522;Parent=Msa0040920-mRNA-1
chr1_1 CDS 71176119 71176147 71176119 ID=Msa0040920-mRNA-1:cds;Parent=Msa0040920-mRNA-1
chr1_1 CDS 71176161 71176408 71176161 ID=Msa0040920-mRNA-1:cds;Parent=Msa0040920-mRNA-1
chr1_1 CDS 71178138 71178148 71178138 ID=Msa0040920-mRNA-1:cds;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71178149 71179057 71178149 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71179387 71179527 71179387 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71179611 71179732 71179611 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71179814 71180024 71179814 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71180150 71180387 71180150 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71180501 71180651 71180501 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
chr1_1 three_prime_UTR 71180733 71181144 71180733 ID=Msa0040920-mRNA-1:three_prime_utr;Parent=Msa0040920-mRNA-1
Gene Sequence

>Msa0040920

ATGCTTTTGGTAAATTGGCTGATAAGTCAACAACCAAAAACTATATGGTTTTGTTTGGTGCGTCCCAACCTATCTTCAGAAAACTGTAGCTGGTGTCTTAACGATGCCATAGCAGAAATTCCAACTAGTTGTTGCAGAGGAAAATCTGGAGGAGCAATATTTTATCCCAGTTGTGGTCTTAAATTTGACTTAAATCCTTTCCACAAGGCACACAACAATATTGCATGGGGAACACCACCTCCACTACCAACAATTCCTCGTCCTTCAGCTCCACCAGGAAATCTTTAA
Protein sequence

>Msa0040920

MLLVNWLISQQPKTIWFCLVRPNLSSENCSWCLNDAIAEIPTSCCRGKSGGAIFYPSCGLKFDLNPFHKAHNNIAWGTPPPLPTIPRPSAPPGNL*