AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011450 MtrunA17_Chr1g0159921 99.216 255 2 0 200 454 277 531 0.0 547
Msa0011450 MtrunA17_Chr1g0159921 99.000 200 2 0 1 200 1 200 6.18e-132 391
Msa0011450 MtrunA17_Chr3g0136771 25.000 284 164 15 200 454 166 429 8.65e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011450 AT1G44446.4 82.072 251 45 0 200 450 183 433 2.47e-154 445
Msa0011450 AT1G44446.4 66.981 106 35 0 95 200 1 106 1.78e-35 136
Msa0011450 AT1G44446.1 82.072 251 45 0 200 450 285 535 1.84e-153 446
Msa0011450 AT1G44446.1 65.366 205 64 2 3 200 4 208 7.96e-77 249
Msa0011450 AT1G44446.2 83.920 199 32 0 200 398 285 483 7.05e-119 357
Msa0011450 AT1G44446.2 65.385 208 64 3 1 200 1 208 2.90e-77 250
Msa0011450 AT1G44446.3 65.385 208 64 3 1 200 1 208 3.83e-78 250
Msa0011450 AT1G44446.3 80.392 102 20 0 200 301 285 386 2.51e-47 169
Msa0011450 AT2G24820.1 24.632 272 162 12 200 443 152 408 1.73e-11 66.6

Find 135 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_1:+17254771 None:intergenic
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_1:-17258642 Msa0011450:CDS
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_1:-17254829 Msa0011450:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_1:+17255919 None:intergenic
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_1:+17255779 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_1:+17255895 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 1_1:-17254785 Msa0011450:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 1_1:-17256672 Msa0011450:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_1:-17256012 Msa0011450:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_1:+17255209 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_1:-17256864 Msa0011450:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_1:+17258552 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_1:+17254817 None:intergenic
TATGGTTTCACCATCTTAGA+TGG 0.312209 1_1:-17254811 Msa0011450:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_1:-17257885 Msa0011450:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_1:+17256623 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_1:+17257721 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_1:-17256011 Msa0011450:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_1:-17257709 Msa0011450:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_1:+17256969 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_1:-17254973 Msa0011450:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_1:-17257867 Msa0011450:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_1:-17256693 Msa0011450:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_1:+17254845 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_1:-17258535 Msa0011450:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_1:-17258624 Msa0011450:CDS
ATGCTTCTTAAGATCCAATA+AGG 0.383649 1_1:-17255027 Msa0011450:three_prime_UTR
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_1:-17257552 Msa0011450:intron
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_1:-17257682 Msa0011450:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_1:+17254772 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_1:+17258500 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_1:-17256917 Msa0011450:CDS
GGATCCCTATCCGATTGATA+TGG 0.397893 1_1:-17255990 Msa0011450:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_1:-17254784 Msa0011450:three_prime_UTR
CCAAGCTTGTCATAGGTAAC+TGG 0.399584 1_1:+17255166 None:intergenic
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_1:-17259656 Msa0011450:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_1:-17255195 Msa0011450:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_1:-17255969 Msa0011450:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_1:-17256923 Msa0011450:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_1:-17255128 Msa0011450:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_1:-17256598 Msa0011450:intron
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_1:+17255159 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_1:+17259710 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_1:-17255147 Msa0011450:CDS
TTAATTATTATGTGTGTTGA+AGG 0.424888 1_1:+17255090 None:intergenic
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_1:+17259641 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_1:-17255952 Msa0011450:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_1:+17259672 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_1:+17254925 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_1:-17255153 Msa0011450:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 1_1:+17256674 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_1:+17255920 None:intergenic
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_1:+17256864 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_1:+17255795 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_1:-17255208 Msa0011450:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_1:+17256624 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_1:-17258482 Msa0011450:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_1:-17255953 Msa0011450:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_1:-17258436 Msa0011450:intron
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_1:+17259701 None:intergenic
GGGTGCAATATTTGATGTAC+AGG 0.479113 1_1:-17258577 Msa0011450:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_1:+17256930 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_1:+17254777 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_1:-17255134 Msa0011450:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_1:-17255144 Msa0011450:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_1:-17255938 Msa0011450:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_1:-17257691 Msa0011450:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_1:-17255127 Msa0011450:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 1_1:-17254805 Msa0011450:three_prime_UTR
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_1:+17259733 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_1:+17257600 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_1:+17254717 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_1:+17255985 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_1:-17256615 Msa0011450:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_1:-17254944 Msa0011450:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_1:+17255876 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_1:-17255828 Msa0011450:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_1:+17255980 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_1:-17254731 Msa0011450:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_1:+17256880 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_1:-17256702 Msa0011450:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_1:-17258546 Msa0011450:CDS
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_1:-17255926 Msa0011450:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_1:+17254939 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_1:-17258473 Msa0011450:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_1:+17256879 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_1:-17255159 Msa0011450:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 1_1:-17254808 Msa0011450:three_prime_UTR
CCAGTTACCTATGACAAGCT+TGG 0.543997 1_1:-17255166 Msa0011450:CDS
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_1:+17255870 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_1:-17255937 Msa0011450:CDS
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_1:-17257671 Msa0011450:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_1:-17256912 Msa0011450:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_1:-17256614 Msa0011450:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_1:+17254926 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_1:+17255986 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_1:+17255937 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_1:-17256610 Msa0011450:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_1:+17255796 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_1:+17257608 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_1:-17257581 Msa0011450:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_1:-17257899 Msa0011450:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_1:-17257840 Msa0011450:intron
TAATTATTATGTGTGTTGAA+GGG 0.567219 1_1:+17255091 None:intergenic
TATACCACCACCATCTAAGA+TGG 0.570781 1_1:+17254801 None:intergenic
GAGGATCTACGGCTAGTAGT+TGG 0.571790 1_1:-17255232 Msa0011450:CDS
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_1:+17256881 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_1:-17257008 Msa0011450:CDS
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_1:-17259655 Msa0011450:intron
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_1:-17258598 Msa0011450:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_1:-17258506 Msa0011450:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_1:+17256016 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_1:+17256832 None:intergenic
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_1:+17254971 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_1:-17254943 Msa0011450:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_1:+17256645 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_1:+17257905 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 1_1:-17256683 Msa0011450:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_1:-17256019 Msa0011450:CDS
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_1:-17254899 Msa0011450:three_prime_UTR
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_1:+17256625 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_1:+17257617 None:intergenic
ATGGTTGATAGAACCATACA+AGG 0.639943 1_1:+17255956 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_1:-17255143 Msa0011450:CDS
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_1:+17255797 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_1:-17256844 Msa0011450:intron
GCATGGACTATAAATCCAGA+AGG 0.652893 1_1:+17256849 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_1:-17254783 Msa0011450:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_1:+17256882 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_1:+17254895 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_1:+17256852 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_1:-17258599 Msa0011450:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_1:-17254886 Msa0011450:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_1:-17258597 Msa0011450:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_1:+17255959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCTAAATTTAATAG+CGG + chr1_1:17255367-17255386 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG + chr1_1:17255692-17255711 None:intergenic 10.0%
!! TATAAATTTAGTCACTATTT+AGG - chr1_1:17255114-17255133 Msa0011450:CDS 15.0%
!! TTATGAAATGATAGATTTAT+AGG - chr1_1:17258395-17258414 Msa0011450:intron 15.0%
!!! TATCATACATTGTTTCTTTT+AGG - chr1_1:17255319-17255338 Msa0011450:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG - chr1_1:17255330-17255349 Msa0011450:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG - chr1_1:17255389-17255408 Msa0011450:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG - chr1_1:17255807-17255826 Msa0011450:CDS 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG - chr1_1:17255808-17255827 Msa0011450:CDS 20.0%
!! TCTTAATAATCAGAAACTAT+TGG - chr1_1:17256533-17256552 Msa0011450:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG + chr1_1:17256973-17256992 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG - chr1_1:17256972-17256991 Msa0011450:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG + chr1_1:17256977-17256996 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG + chr1_1:17257660-17257679 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG - chr1_1:17257742-17257761 Msa0011450:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG + chr1_1:17257927-17257946 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG + chr1_1:17257928-17257947 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+GGG - chr1_1:17258059-17258078 Msa0011450:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG + chr1_1:17258086-17258105 None:intergenic 20.0%
!! TGTTTAAATTGATGAGTATA+TGG - chr1_1:17258878-17258897 Msa0011450:intron 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG + chr1_1:17259065-17259084 None:intergenic 20.0%
!! TAATTATTATGTGTGTTGAA+GGG + chr1_1:17259396-17259415 None:intergenic 20.0%
!! TTAATTATTATGTGTGTTGA+AGG + chr1_1:17259397-17259416 None:intergenic 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG + chr1_1:17259474-17259493 None:intergenic 20.0%
! TCTCATATTAAATAGTGATG+TGG + chr1_1:17255140-17255159 None:intergenic 25.0%
!! CAATTGATCTAAAATAGGTT+CGG - chr1_1:17255227-17255246 Msa0011450:CDS 25.0%
!! TTCAAACTCGAATTCTAAAA+TGG + chr1_1:17255256-17255275 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG - chr1_1:17255561-17255580 Msa0011450:intron 25.0%
! AAACCATACTCTTTCATATA+TGG + chr1_1:17255783-17255802 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG + chr1_1:17255950-17255969 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG - chr1_1:17255949-17255968 Msa0011450:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG - chr1_1:17256002-17256021 Msa0011450:CDS 25.0%
!! GGTACTATATAACTTTTGAT+TGG - chr1_1:17256171-17256190 Msa0011450:intron 25.0%
! TCAATTCAAACAAACATAGA+TGG + chr1_1:17256200-17256219 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG + chr1_1:17256525-17256544 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG - chr1_1:17256739-17256758 Msa0011450:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG + chr1_1:17256932-17256951 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG - chr1_1:17256932-17256951 Msa0011450:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG + chr1_1:17257098-17257117 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG + chr1_1:17257111-17257130 None:intergenic 25.0%
! AGACGACAAATATCTTTAAA+AGG + chr1_1:17257129-17257148 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG + chr1_1:17257423-17257442 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG - chr1_1:17257943-17257962 Msa0011450:intron 25.0%
! GTTCATGTATCATAATAACT+TGG - chr1_1:17258058-17258077 Msa0011450:intron 25.0%
! TCATGTATCATAATAACTTG+GGG - chr1_1:17258060-17258079 Msa0011450:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG + chr1_1:17258178-17258197 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG + chr1_1:17258636-17258655 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG + chr1_1:17258637-17258656 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG + chr1_1:17258762-17258781 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG + chr1_1:17258763-17258782 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG - chr1_1:17258828-17258847 Msa0011450:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG - chr1_1:17258837-17258856 Msa0011450:intron 25.0%
! GATTATTAACTACTCAACAT+TGG - chr1_1:17259000-17259019 Msa0011450:intron 25.0%
! CAAGAAAGATTTATCTTAAC+AGG + chr1_1:17259135-17259154 None:intergenic 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG - chr1_1:17259145-17259164 Msa0011450:intron 25.0%
! TGTTGATATTTCCATACTTT+AGG - chr1_1:17259221-17259240 Msa0011450:intron 25.0%
! ACAGTGTTAAATCCAATTTA+TGG - chr1_1:17259655-17259674 Msa0011450:intron 25.0%
TTGGAAGTTCTACAAAAGAT+AGG + chr1_1:17254815-17254834 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG - chr1_1:17254928-17254947 Msa0011450:three_prime_UTR 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG - chr1_1:17255026-17255045 Msa0011450:three_prime_UTR 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG - chr1_1:17255062-17255081 Msa0011450:three_prime_UTR 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG - chr1_1:17255067-17255086 Msa0011450:three_prime_UTR 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG - chr1_1:17255068-17255087 Msa0011450:three_prime_UTR 30.0%
! TGGCTCAATTGATCTAAAAT+AGG - chr1_1:17255222-17255241 Msa0011450:CDS 30.0%
TCTAAATTTAATAGCGGCAT+AGG + chr1_1:17255361-17255380 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG - chr1_1:17255518-17255537 Msa0011450:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG + chr1_1:17255574-17255593 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG + chr1_1:17255778-17255797 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG + chr1_1:17256063-17256082 None:intergenic 30.0%
GACATATTTGAGCTTATCTA+TGG - chr1_1:17256218-17256237 Msa0011450:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG - chr1_1:17256314-17256333 Msa0011450:intron 30.0%
ATATAGGGAGAATACAACAA+CGG + chr1_1:17256484-17256503 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG + chr1_1:17256499-17256518 None:intergenic 30.0%
TATTAAGATAAGCACATGGT+GGG + chr1_1:17256521-17256540 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG + chr1_1:17256522-17256541 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG - chr1_1:17256539-17256558 Msa0011450:intron 30.0%
! CAAATACGAATTTGAAGCTT+TGG + chr1_1:17256705-17256724 None:intergenic 30.0%
AAACTCTTGCTTCAGATATA+TGG + chr1_1:17256766-17256785 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG + chr1_1:17256887-17256906 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG - chr1_1:17257443-17257462 Msa0011450:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG - chr1_1:17257447-17257466 Msa0011450:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG - chr1_1:17257551-17257570 Msa0011450:intron 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG - chr1_1:17257552-17257571 Msa0011450:intron 30.0%
TAAGTATAGTCTGTCCTAAT+AGG - chr1_1:17257670-17257689 Msa0011450:CDS 30.0%
CATAGCTTAGAATACCTATT+AGG + chr1_1:17257687-17257706 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG + chr1_1:17257776-17257795 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG - chr1_1:17257782-17257801 Msa0011450:intron 30.0%
!! ATTACTTTTGGACAACCTTT+TGG - chr1_1:17257824-17257843 Msa0011450:intron 30.0%
ATGTCGAAGTATGAGTAAAA+GGG + chr1_1:17257863-17257882 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG + chr1_1:17257864-17257883 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG - chr1_1:17258005-17258024 Msa0011450:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG - chr1_1:17258097-17258116 Msa0011450:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG - chr1_1:17258290-17258309 Msa0011450:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG - chr1_1:17258449-17258468 Msa0011450:CDS 30.0%
ATTGCTATATAGAATGTCAC+TGG - chr1_1:17258656-17258675 Msa0011450:intron 30.0%
! AAAAGGCATATGCTTAAGAA+GGG + chr1_1:17258691-17258710 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG + chr1_1:17258692-17258711 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG - chr1_1:17258692-17258711 Msa0011450:intron 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG + chr1_1:17258816-17258835 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG - chr1_1:17258815-17258834 Msa0011450:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG - chr1_1:17258827-17258846 Msa0011450:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG + chr1_1:17258924-17258943 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG - chr1_1:17258935-17258954 Msa0011450:intron 30.0%
ATTCATCATATGTGCCTAAT+TGG - chr1_1:17258965-17258984 Msa0011450:intron 30.0%
GCACATATGATGAATAGTTA+TGG + chr1_1:17259043-17259062 None:intergenic 30.0%
! CTCGTTTAAAACCTAAAGTA+TGG + chr1_1:17259235-17259254 None:intergenic 30.0%
!!! CATACTTTAGGTTTTAAACG+AGG - chr1_1:17259233-17259252 Msa0011450:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG + chr1_1:17259278-17259297 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG - chr1_1:17259276-17259295 Msa0011450:intron 30.0%
! TGAATAAAGGTGCAAATGTA+TGG - chr1_1:17259289-17259308 Msa0011450:intron 30.0%
ATGCTTCTTAAGATCCAATA+AGG - chr1_1:17259457-17259476 Msa0011450:intron 30.0%
ACACTGTACACAAATTTAAG+AGG + chr1_1:17259642-17259661 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG + chr1_1:17259670-17259689 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG + chr1_1:17254754-17254773 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG + chr1_1:17254857-17254876 None:intergenic 35.0%
GTGAGTGGTTTAATAATAGG+TGG - chr1_1:17255202-17255221 Msa0011450:CDS 35.0%
TGAACATAACTCGACAAAGT+TGG - chr1_1:17255272-17255291 Msa0011450:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG + chr1_1:17255458-17255477 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG + chr1_1:17255646-17255665 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG - chr1_1:17255742-17255761 Msa0011450:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG - chr1_1:17255777-17255796 Msa0011450:CDS 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG - chr1_1:17255814-17255833 Msa0011450:CDS 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG - chr1_1:17255823-17255842 Msa0011450:CDS 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG - chr1_1:17255824-17255843 Msa0011450:CDS 35.0%
CAGGGTTTGAAAGGTAAATT+TGG - chr1_1:17255842-17255861 Msa0011450:CDS 35.0%
GTTGGATCAAATTAGAGACT+TGG - chr1_1:17256150-17256169 Msa0011450:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + chr1_1:17256300-17256319 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG + chr1_1:17256324-17256343 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG - chr1_1:17256446-17256465 Msa0011450:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG - chr1_1:17256447-17256466 Msa0011450:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG + chr1_1:17256460-17256479 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG - chr1_1:17256458-17256477 Msa0011450:intron 35.0%
GGATGCTTTATAGCACATAT+AGG + chr1_1:17256500-17256519 None:intergenic 35.0%
! ATACGAATTTGAAGCTTTGG+TGG + chr1_1:17256702-17256721 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG - chr1_1:17256793-17256812 Msa0011450:intron 35.0%
TGGAAGAATTGGTAAATGAC+AGG - chr1_1:17256813-17256832 Msa0011450:intron 35.0%
CTGTACATACTGAAAGAAGA+AGG - chr1_1:17256903-17256922 Msa0011450:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG - chr1_1:17257015-17257034 Msa0011450:intron 35.0%
GTTCCTCAAAACATTCCATT+GGG + chr1_1:17257191-17257210 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG - chr1_1:17257216-17257235 Msa0011450:intron 35.0%
!! CATGTATTTTGAACACATCC+AGG + chr1_1:17257246-17257265 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG + chr1_1:17257286-17257305 None:intergenic 35.0%
TAGTAGTGAGTTACATGACA+TGG - chr1_1:17257397-17257416 Msa0011450:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG - chr1_1:17257455-17257474 Msa0011450:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG + chr1_1:17257518-17257537 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG + chr1_1:17257557-17257576 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG + chr1_1:17257655-17257674 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG - chr1_1:17257754-17257773 Msa0011450:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG + chr1_1:17257775-17257794 None:intergenic 35.0%
AAAAGTAATCCGTGTTCAAC+CGG + chr1_1:17257813-17257832 None:intergenic 35.0%
TGTCGAAGTATGAGTAAAAG+GGG + chr1_1:17257862-17257881 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG - chr1_1:17257869-17257888 Msa0011450:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG - chr1_1:17257870-17257889 Msa0011450:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG + chr1_1:17257906-17257925 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG - chr1_1:17258193-17258212 Msa0011450:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG + chr1_1:17258213-17258232 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG + chr1_1:17258336-17258355 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG + chr1_1:17258501-17258520 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG + chr1_1:17258502-17258521 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG + chr1_1:17258531-17258550 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG - chr1_1:17258531-17258550 Msa0011450:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG - chr1_1:17258532-17258551 Msa0011450:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG + chr1_1:17258690-17258709 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG - chr1_1:17258703-17258722 Msa0011450:intron 35.0%
CTCCATAGATGTTCCATAAA+AGG + chr1_1:17258708-17258727 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG - chr1_1:17258706-17258725 Msa0011450:intron 35.0%
CAATTGATTGTGTTTGAGCA+AGG - chr1_1:17258779-17258798 Msa0011450:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG - chr1_1:17258788-17258807 Msa0011450:intron 35.0%
!! ATACTCTTGCCACTTTCTTA+TGG + chr1_1:17258947-17258966 None:intergenic 35.0%
!!! AGGTTTTAAACGAGGATCTA+CGG - chr1_1:17259241-17259260 Msa0011450:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG - chr1_1:17259511-17259530 Msa0011450:intron 35.0%
TCATATCAACACAACATTCC+CGG + chr1_1:17259562-17259581 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG - chr1_1:17259585-17259604 Msa0011450:intron 35.0%
ACAACCTTGTCATTCTACAA+AGG + chr1_1:17259592-17259611 None:intergenic 35.0%
TATGGTTTCACCATCTTAGA+TGG - chr1_1:17259673-17259692 Msa0011450:CDS 35.0%
CATACAACAATCCCCTTTAA+GGG + chr1_1:17259715-17259734 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG + chr1_1:17259716-17259735 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG - chr1_1:17259753-17259772 Msa0011450:five_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG + chr1_1:17254786-17254805 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG - chr1_1:17254829-17254848 Msa0011450:three_prime_UTR 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG + chr1_1:17254846-17254865 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG + chr1_1:17255178-17255197 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG + chr1_1:17255179-17255198 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG - chr1_1:17255179-17255198 Msa0011450:CDS 40.0%
AATCTCAAAACCTGTGACTC+GGG - chr1_1:17255180-17255199 Msa0011450:CDS 40.0%
CGGGTGAGTGGTTTAATAAT+AGG - chr1_1:17255199-17255218 Msa0011450:CDS 40.0%
ACATAACTCGACAAAGTTGG+AGG - chr1_1:17255275-17255294 Msa0011450:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG + chr1_1:17255496-17255515 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG - chr1_1:17255741-17255760 Msa0011450:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG - chr1_1:17255833-17255852 Msa0011450:CDS 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG - chr1_1:17255860-17255879 Msa0011450:CDS 40.0%
GGGTGCAATATTTGATGTAC+AGG - chr1_1:17255907-17255926 Msa0011450:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG - chr1_1:17255938-17255957 Msa0011450:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG - chr1_1:17255978-17255997 Msa0011450:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG + chr1_1:17255987-17256006 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG + chr1_1:17256060-17256079 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG + chr1_1:17256149-17256168 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG - chr1_1:17256244-17256263 Msa0011450:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG - chr1_1:17256245-17256264 Msa0011450:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG + chr1_1:17256251-17256270 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG - chr1_1:17256542-17256561 Msa0011450:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG - chr1_1:17256609-17256628 Msa0011450:CDS 40.0%
CCATGAAAAAGGATCTAGCT+GGG - chr1_1:17256610-17256629 Msa0011450:CDS 40.0%
AGCAAGAGTTTCTACTGCTT+TGG - chr1_1:17256775-17256794 Msa0011450:intron 40.0%
ACTCGCTTACATGGAAGAAT+TGG - chr1_1:17256802-17256821 Msa0011450:intron 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG + chr1_1:17256879-17256898 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG + chr1_1:17256959-17256978 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG - chr1_1:17257003-17257022 Msa0011450:CDS 40.0%
GGATTGATATCGACATACCA+TGG + chr1_1:17257035-17257054 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG + chr1_1:17257178-17257197 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG + chr1_1:17257179-17257198 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG + chr1_1:17257185-17257204 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG - chr1_1:17257185-17257204 Msa0011450:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG + chr1_1:17257192-17257211 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG - chr1_1:17257193-17257212 Msa0011450:intron 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG - chr1_1:17257194-17257213 Msa0011450:intron 40.0%
! AGGAACCATGGGTTATCTTT+AGG - chr1_1:17257205-17257224 Msa0011450:intron 40.0%
! GGAACCATGGGTTATCTTTA+GGG - chr1_1:17257206-17257225 Msa0011450:intron 40.0%
! GAACCATGGGTTATCTTTAG+GGG - chr1_1:17257207-17257226 Msa0011450:intron 40.0%
TTACCCCTAAAGATAACCCA+TGG + chr1_1:17257213-17257232 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG + chr1_1:17257285-17257304 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG + chr1_1:17257287-17257306 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG - chr1_1:17257287-17257306 Msa0011450:intron 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG - chr1_1:17257288-17257307 Msa0011450:intron 40.0%
GATGAATACTAACCGTGGTA+GGG + chr1_1:17257327-17257346 None:intergenic 40.0%
CTACCACGGTTAGTATTCAT+CGG - chr1_1:17257326-17257345 Msa0011450:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG - chr1_1:17257460-17257479 Msa0011450:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG - chr1_1:17257561-17257580 Msa0011450:CDS 40.0%
AAGAAGGGATGATCTGGATT+TGG - chr1_1:17257567-17257586 Msa0011450:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG + chr1_1:17257635-17257654 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG + chr1_1:17257638-17257657 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG - chr1_1:17257791-17257810 Msa0011450:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG - chr1_1:17257812-17257831 Msa0011450:intron 40.0%
!!! AATTTTTTGACACCGGCATC+TGG - chr1_1:17258456-17258475 Msa0011450:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG - chr1_1:17258473-17258492 Msa0011450:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG + chr1_1:17258507-17258526 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG + chr1_1:17258528-17258547 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG + chr1_1:17258567-17258586 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG + chr1_1:17258568-17258587 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG + chr1_1:17258592-17258611 None:intergenic 40.0%
TCTCCATCGAAGAACCAATT+AGG + chr1_1:17258982-17259001 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG - chr1_1:17259331-17259350 Msa0011450:intron 40.0%
TTGGAGTAAGGTATAGGCTT+TGG - chr1_1:17259337-17259356 Msa0011450:intron 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG - chr1_1:17259341-17259360 Msa0011450:intron 40.0%
! AGCCATGAAGTTCTAATGCA+AGG + chr1_1:17259516-17259535 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG + chr1_1:17259561-17259580 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG - chr1_1:17259598-17259617 Msa0011450:intron 40.0%
TATACCACCACCATCTAAGA+TGG + chr1_1:17259686-17259705 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG - chr1_1:17259699-17259718 Msa0011450:CDS 40.0%
GGTATAACCACACCCTTAAA+GGG - chr1_1:17259700-17259719 Msa0011450:CDS 40.0%
GTATAACCACACCCTTAAAG+GGG - chr1_1:17259701-17259720 Msa0011450:CDS 40.0%
GATTGTAACTCAAACCAGTC+AGG + chr1_1:17259770-17259789 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG + chr1_1:17254777-17254796 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG - chr1_1:17254828-17254847 Msa0011450:three_prime_UTR 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG + chr1_1:17254834-17254853 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG + chr1_1:17255448-17255467 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG + chr1_1:17255481-17255500 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG - chr1_1:17255492-17255511 Msa0011450:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG - chr1_1:17255756-17255775 Msa0011450:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG - chr1_1:17255885-17255904 Msa0011450:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG - chr1_1:17255886-17255905 Msa0011450:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG + chr1_1:17255935-17255954 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG - chr1_1:17256011-17256030 Msa0011450:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG + chr1_1:17256050-17256069 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG - chr1_1:17256048-17256067 Msa0011450:intron 45.0%
CTCTCCCAAATAGTCTCACA+AGG + chr1_1:17256252-17256271 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG + chr1_1:17256582-17256601 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG - chr1_1:17256585-17256604 Msa0011450:intron 45.0%
GTCGATTGGCACCATGAAAA+AGG - chr1_1:17256599-17256618 Msa0011450:CDS 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG + chr1_1:17256613-17256632 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG - chr1_1:17256644-17256663 Msa0011450:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG + chr1_1:17257001-17257020 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG + chr1_1:17257174-17257193 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG - chr1_1:17257173-17257192 Msa0011450:intron 45.0%
CGATGAATACTAACCGTGGT+AGG + chr1_1:17257328-17257347 None:intergenic 45.0%
GTTCCGATGAATACTAACCG+TGG + chr1_1:17257332-17257351 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG + chr1_1:17257461-17257480 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG - chr1_1:17257459-17257478 Msa0011450:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG + chr1_1:17257607-17257626 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG + chr1_1:17257608-17257627 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG + chr1_1:17257623-17257642 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG - chr1_1:17257620-17257639 Msa0011450:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG - chr1_1:17257640-17257659 Msa0011450:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG - chr1_1:17257801-17257820 Msa0011450:intron 45.0%
! CTTCGACATTTGCTAAGGGA+TGG - chr1_1:17257874-17257893 Msa0011450:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG - chr1_1:17258112-17258131 Msa0011450:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG - chr1_1:17258113-17258132 Msa0011450:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG - chr1_1:17258122-17258141 Msa0011450:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG - chr1_1:17258472-17258491 Msa0011450:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG - chr1_1:17258494-17258513 Msa0011450:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG + chr1_1:17258617-17258636 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG - chr1_1:17258722-17258741 Msa0011450:intron 45.0%
TAACCACTCGGACAAATCAC+AGG + chr1_1:17258912-17258931 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG - chr1_1:17258976-17258995 Msa0011450:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG + chr1_1:17259321-17259340 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG - chr1_1:17259318-17259337 Msa0011450:intron 45.0%
CCTTACTCCAAGCTTGTCAT+AGG + chr1_1:17259328-17259347 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG - chr1_1:17259325-17259344 Msa0011450:intron 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG - chr1_1:17259340-17259359 Msa0011450:intron 45.0%
TTGGAGGGATGCATTGGAAA+AGG - chr1_1:17259356-17259375 Msa0011450:intron 45.0%
TGGAGGGATGCATTGGAAAA+GGG - chr1_1:17259357-17259376 Msa0011450:intron 45.0%
ATCAACCTAGTGAAGCTACC+CGG - chr1_1:17259540-17259559 Msa0011450:intron 45.0%
GGTTTCACCATCTTAGATGG+TGG - chr1_1:17259676-17259695 Msa0011450:CDS 45.0%
! TTCACCATCTTAGATGGTGG+TGG - chr1_1:17259679-17259698 Msa0011450:CDS 45.0%
! AACAATCCCCTTTAAGGGTG+TGG + chr1_1:17259710-17259729 None:intergenic 45.0%
!!! ATCATTTTTTTTAAATAAAA+AGG + chr1_1:17257056-17257075 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG - chr1_1:17255280-17255299 Msa0011450:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG - chr1_1:17255491-17255510 Msa0011450:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG + chr1_1:17255757-17255776 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG - chr1_1:17255887-17255906 Msa0011450:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG - chr1_1:17256617-17256636 Msa0011450:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG + chr1_1:17256870-17256889 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG - chr1_1:17257225-17257244 Msa0011450:intron 50.0%
AGAGCATGTCCCCTTCATCT+TGG - chr1_1:17257273-17257292 Msa0011450:intron 50.0%
GGCTGGGAATATACGACAGA+CGG - chr1_1:17257476-17257495 Msa0011450:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG + chr1_1:17257606-17257625 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG - chr1_1:17257886-17257905 Msa0011450:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG + chr1_1:17258202-17258221 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG + chr1_1:17258471-17258490 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG - chr1_1:17258515-17258534 Msa0011450:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG - chr1_1:17258546-17258565 Msa0011450:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG - chr1_1:17258558-17258577 Msa0011450:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG + chr1_1:17258611-17258630 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG + chr1_1:17258908-17258927 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG - chr1_1:17258906-17258925 Msa0011450:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG - chr1_1:17259252-17259271 Msa0011450:intron 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG - chr1_1:17259350-17259369 Msa0011450:intron 50.0%
TCAACCTAGTGAAGCTACCC+GGG - chr1_1:17259541-17259560 Msa0011450:intron 50.0%
! AAACCTGTGACTCGGGTGAG+TGG - chr1_1:17255187-17255206 Msa0011450:CDS 55.0%
AAACCACTCACCCGAGTCAC+AGG + chr1_1:17255193-17255212 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG + chr1_1:17255418-17255437 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG - chr1_1:17255431-17255450 Msa0011450:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG + chr1_1:17255440-17255459 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG + chr1_1:17255441-17255460 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG - chr1_1:17255441-17255460 Msa0011450:intron 55.0%
CAGACATGCATGCACCTCGT+TGG - chr1_1:17256132-17256151 Msa0011450:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG - chr1_1:17257312-17257331 Msa0011450:intron 55.0%
GGGATGATCTGGATTTGGCC+TGG - chr1_1:17257572-17257591 Msa0011450:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG + chr1_1:17257605-17257624 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG + chr1_1:17258118-17258137 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG - chr1_1:17258547-17258566 Msa0011450:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG + chr1_1:17259548-17259567 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG - chr1_1:17255430-17255449 Msa0011450:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG + chr1_1:17257842-17257861 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG - chr1_1:17258465-17258484 Msa0011450:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG + chr1_1:17258550-17258569 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG + chr1_1:17257593-17257612 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17254694 17259812 17254694 ID=Msa0011450;Name=Msa0011450
chr1_1 mRNA 17254694 17259812 17254694 ID=Msa0011450-mRNA-1;Parent=Msa0011450;Name=Msa0011450-mRNA-1;_AED=0.14;_eAED=0.14;_QI=82|0.85|0.87|1|1|1|8|396|454
chr1_1 exon 17254694 17255263 17254694 ID=Msa0011450-mRNA-1:exon:6285;Parent=Msa0011450-mRNA-1
chr1_1 exon 17255763 17256057 17255763 ID=Msa0011450-mRNA-1:exon:6284;Parent=Msa0011450-mRNA-1
chr1_1 exon 17256599 17256711 17256599 ID=Msa0011450-mRNA-1:exon:6283;Parent=Msa0011450-mRNA-1
chr1_1 exon 17256845 17257029 17256845 ID=Msa0011450-mRNA-1:exon:6282;Parent=Msa0011450-mRNA-1
chr1_1 exon 17257553 17257745 17257553 ID=Msa0011450-mRNA-1:exon:6281;Parent=Msa0011450-mRNA-1
chr1_1 exon 17257841 17257945 17257841 ID=Msa0011450-mRNA-1:exon:6280;Parent=Msa0011450-mRNA-1
chr1_1 exon 17258437 17258661 17258437 ID=Msa0011450-mRNA-1:exon:6279;Parent=Msa0011450-mRNA-1
chr1_1 exon 17259656 17259812 17259656 ID=Msa0011450-mRNA-1:exon:6278;Parent=Msa0011450-mRNA-1
chr1_1 five_prime_UTR 17259731 17259812 17259731 ID=Msa0011450-mRNA-1:five_prime_utr;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17259656 17259730 17259656 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17258437 17258661 17258437 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17257841 17257945 17257841 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17257553 17257745 17257553 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17256845 17257029 17256845 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17256599 17256711 17256599 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17255763 17256057 17255763 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 CDS 17255090 17255263 17255090 ID=Msa0011450-mRNA-1:cds;Parent=Msa0011450-mRNA-1
chr1_1 three_prime_UTR 17254694 17255089 17254694 ID=Msa0011450-mRNA-1:three_prime_utr;Parent=Msa0011450-mRNA-1
Gene Sequence

>Msa0011450

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCAATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAACGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTGCCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACATAATAATTAA

Protein sequence

>Msa0011450

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*