Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041380 | XP_039685916.1 | 87.990 | 408 | 20 | 3 | 1 | 405 | 1 | 382 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041380 | sp|Q9SUG3|ITPK3_ARATH | 58.663 | 404 | 102 | 4 | 3 | 405 | 11 | 350 | 3.23e-147 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041380 | A0A072VQB8 | 79.753 | 405 | 19 | 4 | 1 | 405 | 1 | 342 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041380 | Msa1157020 | 0.803898 | 2.798414e-49 | -8.615850e-47 |
| Msa0041380 | Msa1454000 | 0.938121 | 1.133991e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041380 | MtrunA17_Chr1g0206731 | 79.753 | 405 | 19 | 4 | 1 | 405 | 1 | 342 | 0.0 | 614 |
| Msa0041380 | MtrunA17_Chr5g0393881 | 62.432 | 370 | 73 | 3 | 31 | 398 | 11 | 316 | 1.16e-143 | 411 |
| Msa0041380 | MtrunA17_Chr8g0366491 | 37.047 | 386 | 159 | 9 | 33 | 403 | 8 | 324 | 4.50e-74 | 236 |
| Msa0041380 | MtrunA17_Chr4g0059021 | 36.856 | 369 | 162 | 7 | 34 | 396 | 10 | 313 | 6.78e-68 | 218 |
| Msa0041380 | MtrunA17_Chr3g0111511 | 25.641 | 390 | 222 | 14 | 6 | 382 | 134 | 468 | 1.68e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041380 | AT4G08170.2 | 58.663 | 404 | 102 | 4 | 3 | 405 | 11 | 350 | 3.28e-148 | 424 |
| Msa0041380 | AT4G08170.1 | 75.794 | 252 | 59 | 1 | 154 | 405 | 13 | 262 | 1.31e-128 | 371 |
| Msa0041380 | AT4G33770.1 | 55.108 | 372 | 103 | 3 | 31 | 402 | 80 | 387 | 1.19e-127 | 374 |
| Msa0041380 | AT4G08170.3 | 76.682 | 223 | 50 | 1 | 183 | 405 | 1 | 221 | 1.11e-112 | 329 |
| Msa0041380 | AT4G08170.6 | 76.682 | 223 | 50 | 1 | 183 | 405 | 1 | 221 | 1.11e-112 | 329 |
| Msa0041380 | AT4G08170.5 | 76.682 | 223 | 50 | 1 | 183 | 405 | 1 | 221 | 1.11e-112 | 329 |
| Msa0041380 | AT4G08170.7 | 76.682 | 223 | 50 | 1 | 183 | 405 | 1 | 221 | 1.11e-112 | 329 |
| Msa0041380 | AT4G08170.4 | 76.682 | 223 | 50 | 1 | 183 | 405 | 1 | 221 | 1.11e-112 | 329 |
| Msa0041380 | AT4G33770.2 | 65.462 | 249 | 84 | 1 | 154 | 402 | 48 | 294 | 4.42e-108 | 320 |
| Msa0041380 | AT4G33770.2 | 69.388 | 49 | 11 | 1 | 46 | 94 | 6 | 50 | 2.56e-14 | 73.6 |
| Msa0041380 | AT4G33770.3 | 66.364 | 220 | 72 | 1 | 183 | 402 | 1 | 218 | 1.04e-93 | 281 |
| Msa0041380 | AT5G16760.1 | 36.533 | 375 | 167 | 8 | 30 | 398 | 7 | 316 | 1.08e-66 | 215 |
| Msa0041380 | AT2G43980.1 | 28.736 | 174 | 118 | 4 | 212 | 382 | 295 | 465 | 2.86e-15 | 77.8 |
Find 101 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTTGCACTACTTTATT+TGG | 0.121328 | 1_1:+71712294 | None:intergenic |
| TACAAACTTCATGGAGAATT+TGG | 0.129435 | 1_1:+71714818 | None:intergenic |
| CTTCATAAATATTTGAAAAT+AGG | 0.164201 | 1_1:+71712684 | None:intergenic |
| ATCAATCGCGGAACCGATTA+TGG | 0.164924 | 1_1:+71717508 | None:intergenic |
| AAATCCTTCATTAATGAAAA+AGG | 0.178226 | 1_1:+71714766 | None:intergenic |
| CTAAAATATTTGTTGAAATA+TGG | 0.207446 | 1_1:-71712392 | Msa0041380:three_prime_UTR |
| TCTTACACTTGTTCTGCTTT+AGG | 0.209814 | 1_1:+71712830 | None:intergenic |
| TTTCATTAATGAAGGATTTC+AGG | 0.219791 | 1_1:-71714762 | Msa0041380:CDS |
| GTAGATATGATTCGTGAATA+TGG | 0.249264 | 1_1:-71713041 | Msa0041380:CDS |
| ATTGATATCAATTACTTTCC+TGG | 0.288993 | 1_1:-71712996 | Msa0041380:intron |
| CTTGCAAGAGAAATGAAATT+TGG | 0.289856 | 1_1:+71717265 | None:intergenic |
| TATAGAAAAGAAGAGGAATT+AGG | 0.291933 | 1_1:+71717607 | None:intergenic |
| AAAGATTTGATCTTTGAATC+AGG | 0.313744 | 1_1:-71717444 | Msa0041380:five_prime_UTR |
| ACTTGTTTGAATACTTGGTT+TGG | 0.321358 | 1_1:+71715383 | None:intergenic |
| TCTTTAAGATTTATATTGTT+GGG | 0.323070 | 1_1:-71713451 | Msa0041380:CDS |
| TCATTCTCAATTTCCATAAT+CGG | 0.331055 | 1_1:-71717521 | Msa0041380:five_prime_UTR |
| CTTCCAACTTCTCTTGCTTT+AGG | 0.340512 | 1_1:+71712795 | None:intergenic |
| CTTGTTTGAATACTTGGTTT+GGG | 0.341169 | 1_1:+71715384 | None:intergenic |
| TATTGTTGGGGAATACATAA+AGG | 0.342629 | 1_1:-71713438 | Msa0041380:CDS |
| AGCATGAACATTCTATTCAT+TGG | 0.350260 | 1_1:+71712498 | None:intergenic |
| AATAGAATGTTCATGCTTAG+TGG | 0.358768 | 1_1:-71712492 | Msa0041380:three_prime_UTR |
| CTCTTTAAGATTTATATTGT+TGG | 0.359704 | 1_1:-71713452 | Msa0041380:CDS |
| CCATCAAAATACAAACTTCA+TGG | 0.369216 | 1_1:+71714809 | None:intergenic |
| ACACCCACCAAGACCTTTGT+TGG | 0.369643 | 1_1:-71713201 | Msa0041380:CDS |
| CCAGCTTTGGTGACTTCATA+AGG | 0.370201 | 1_1:+71714292 | None:intergenic |
| AGCTCGCGTTTACTGATATT+AGG | 0.375570 | 1_1:+71713395 | None:intergenic |
| TAACAACATTGTCTATAAAC+TGG | 0.377901 | 1_1:-71712439 | Msa0041380:three_prime_UTR |
| ATTTGACATTGTCTTGCATA+AGG | 0.382180 | 1_1:-71715911 | Msa0041380:intron |
| CCTTATGAAGTCACCAAAGC+TGG | 0.387765 | 1_1:-71714292 | Msa0041380:CDS |
| GGAATCTCACCGGCAATACT+AGG | 0.399683 | 1_1:+71713296 | None:intergenic |
| GTTTATAGACAATGTTGTTA+AGG | 0.401644 | 1_1:+71712442 | None:intergenic |
| GTAAAGACGTGCTCGTAGTC+TGG | 0.410319 | 1_1:+71712868 | None:intergenic |
| CGGCAACTTCAACCCAGCTT+TGG | 0.416268 | 1_1:+71714279 | None:intergenic |
| GATCTTGATCCTAGTATTGC+CGG | 0.427389 | 1_1:-71713305 | Msa0041380:intron |
| CTACAAGAGTTTGTCAATCA+TGG | 0.430927 | 1_1:-71713577 | Msa0041380:intron |
| ATTGTTGTGAGTGATGAAAT+TGG | 0.432197 | 1_1:+71717553 | None:intergenic |
| TTCAGAGCTTGAACCTCCAC+TGG | 0.437347 | 1_1:-71713602 | Msa0041380:CDS |
| ACTTCATAAGGAATAGTAGA+TGG | 0.444777 | 1_1:+71714304 | None:intergenic |
| AGCCTCTCCAACAAAGGTCT+TGG | 0.445162 | 1_1:+71713194 | None:intergenic |
| AAAAGAGCTTCGTCATAGAT+TGG | 0.446522 | 1_1:-71713168 | Msa0041380:intron |
| CTGCCTAAAGCAAGAGAAGT+TGG | 0.446556 | 1_1:-71712798 | Msa0041380:exon |
| TGGGTCAGAAAATTGTTGTT+GGG | 0.450840 | 1_1:-71717327 | Msa0041380:CDS |
| TGTGTGTGTGTAATTTATAA+TGG | 0.455315 | 1_1:+71717581 | None:intergenic |
| CTCTCCAACAAAGGTCTTGG+TGG | 0.458592 | 1_1:+71713197 | None:intergenic |
| TTGGGTCAGAAAATTGTTGT+TGG | 0.460458 | 1_1:-71717328 | Msa0041380:CDS |
| TAGATATGATTCGTGAATAT+GGG | 0.470110 | 1_1:-71713040 | Msa0041380:CDS |
| ATTTGTTCTTTCCAGTTGTT+AGG | 0.472300 | 1_1:-71715693 | Msa0041380:intron |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 1_1:+71713344 | None:intergenic |
| TGTAAATGTTGAATTGCATC+AGG | 0.481257 | 1_1:+71714706 | None:intergenic |
| CAAATTTCATTTCTCTTGCA+AGG | 0.481455 | 1_1:-71717264 | Msa0041380:intron |
| AAGATTTGATCTTTGAATCA+GGG | 0.482924 | 1_1:-71717443 | Msa0041380:five_prime_UTR |
| CACATGAAACTCTTGGAAAA+CGG | 0.483083 | 1_1:+71713351 | None:intergenic |
| ATTATGGAAATTGAGAATGA+TGG | 0.496147 | 1_1:+71717524 | None:intergenic |
| TTATGCAAGACAATGTCAAA+TGG | 0.500174 | 1_1:+71715913 | None:intergenic |
| CACCAAGACCTTTGTTGGAG+AGG | 0.502650 | 1_1:-71713196 | Msa0041380:CDS |
| TTGTTTGAATACTTGGTTTG+GGG | 0.506145 | 1_1:+71715385 | None:intergenic |
| TGTTTGAATACTTGGTTTGG+GGG | 0.507717 | 1_1:+71715386 | None:intergenic |
| TCCAGTTGTTAGGCGAGGAA+TGG | 0.516509 | 1_1:-71715683 | Msa0041380:intron |
| GGATCAAGAACGAATACATC+GGG | 0.519070 | 1_1:+71714730 | None:intergenic |
| CCACATCTTGAAGCATGGAT+TGG | 0.521285 | 1_1:+71714677 | None:intergenic |
| CATCTTGAAGCATGGATTGG+CGG | 0.525990 | 1_1:+71714680 | None:intergenic |
| CTTTAAGATTTATATTGTTG+GGG | 0.527390 | 1_1:-71713450 | Msa0041380:CDS |
| GCTGGGTTGAAGTTGCCGTT+AGG | 0.530540 | 1_1:-71714274 | Msa0041380:intron |
| TTTGCAAGCCTCTCCAACAA+AGG | 0.530921 | 1_1:+71713188 | None:intergenic |
| ATCCACCACATCTTGAAGCA+TGG | 0.535346 | 1_1:+71714672 | None:intergenic |
| AATGACATAAAACACATCCT+TGG | 0.546362 | 1_1:+71713016 | None:intergenic |
| TTATGGAAATTGAGAATGAT+GGG | 0.553021 | 1_1:+71717525 | None:intergenic |
| CCAATCCATGCTTCAAGATG+TGG | 0.557398 | 1_1:-71714677 | Msa0041380:CDS |
| TTCTTTCCAGTTGTTAGGCG+AGG | 0.558531 | 1_1:-71715688 | Msa0041380:intron |
| TGGTAGAAATTGGGACAGAG+TGG | 0.560116 | 1_1:+71712349 | None:intergenic |
| TATGTGTAATGCAGGAGCAA+GGG | 0.560921 | 1_1:-71715985 | Msa0041380:intron |
| AGATTTGATCTTTGAATCAG+GGG | 0.562044 | 1_1:-71717442 | Msa0041380:five_prime_UTR |
| CTTATGAAGTCACCAAAGCT+GGG | 0.565266 | 1_1:-71714291 | Msa0041380:CDS |
| TTATGTGTAATGCAGGAGCA+AGG | 0.565876 | 1_1:-71715986 | Msa0041380:intron |
| AGTTGCAAAACCTCTAGTTG+TGG | 0.567026 | 1_1:-71713677 | Msa0041380:CDS |
| ATCCATGCTTCAAGATGTGG+TGG | 0.574463 | 1_1:-71714674 | Msa0041380:CDS |
| TACAAGTACAATGTGAAAGT+AGG | 0.575523 | 1_1:+71715621 | None:intergenic |
| TGAAAGTAGGCTGAAGTGAG+TGG | 0.580145 | 1_1:+71715634 | None:intergenic |
| TCTGATCATGATTCATGATG+AGG | 0.583455 | 1_1:+71715423 | None:intergenic |
| CGCGAGCTATCAAAAGTCGC+AGG | 0.584140 | 1_1:-71713380 | Msa0041380:CDS |
| TCTCCAACAAAGGTCTTGGT+GGG | 0.597564 | 1_1:+71713198 | None:intergenic |
| CTAAAGCAAGAGAAGTTGGA+AGG | 0.600540 | 1_1:-71712794 | Msa0041380:exon |
| GCACTGCCATCCACAACTAG+AGG | 0.603312 | 1_1:+71713667 | None:intergenic |
| AACAAGCCACTGTCAGAACA+AGG | 0.605835 | 1_1:-71715937 | Msa0041380:CDS |
| AAGCATATAACTAGCTACAA+AGG | 0.610187 | 1_1:+71712319 | None:intergenic |
| ATGTGTAATGCAGGAGCAAG+GGG | 0.610801 | 1_1:-71715984 | Msa0041380:intron |
| GAAATGAAATTTATCAATCG+CGG | 0.611747 | 1_1:+71717496 | None:intergenic |
| GCAAAACCTCTAGTTGTGGA+TGG | 0.613529 | 1_1:-71713673 | Msa0041380:CDS |
| CTAAACTTATCTGAGTGCAA+TGG | 0.614593 | 1_1:-71714649 | Msa0041380:intron |
| TAAACTGGCACGAAATGCCA+AGG | 0.616821 | 1_1:-71712424 | Msa0041380:three_prime_UTR |
| AGAAGTGATGGCGAAATCTG+AGG | 0.629932 | 1_1:-71717368 | Msa0041380:CDS |
| AATGGACCTTGTTCTGACAG+TGG | 0.636759 | 1_1:+71715931 | None:intergenic |
| AACTCTTGTAGAACCAGTGG+AGG | 0.639928 | 1_1:+71713589 | None:intergenic |
| AGGATCAAGAACGAATACAT+CGG | 0.641347 | 1_1:+71714729 | None:intergenic |
| ACAAACTCTTGTAGAACCAG+TGG | 0.644820 | 1_1:+71713586 | None:intergenic |
| TTGTAATAACTAGCTGACGA+GGG | 0.649097 | 1_1:+71714338 | None:intergenic |
| GATTCGTGAATATGGGACCA+AGG | 0.655124 | 1_1:-71713033 | Msa0041380:CDS |
| GGGAATACATAAAGGTTGTG+AGG | 0.657084 | 1_1:-71713430 | Msa0041380:CDS |
| TTTGTAATAACTAGCTGACG+AGG | 0.667968 | 1_1:+71714337 | None:intergenic |
| AAATGTTGAATTGCATCAGG+AGG | 0.678092 | 1_1:+71714709 | None:intergenic |
| GGAATGGCGAGAGATCATTG+AGG | 0.697509 | 1_1:-71715667 | Msa0041380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTAATTACATATTTT+CGG | + | chr1_1:71715097-71715116 | None:intergenic | 10.0% |
| !! | AAAATATGTAATTACTAATT+AGG | - | chr1_1:71715097-71715116 | Msa0041380:intron | 10.0% |
| !! | AAATATGTAATTACTAATTA+GGG | - | chr1_1:71715098-71715117 | Msa0041380:intron | 10.0% |
| !!! | TTTTTTAACTTTTTGTTTTA+CGG | - | chr1_1:71717034-71717053 | Msa0041380:intron | 10.0% |
| !!! | AGTGATTTTTTTTTTTTTAG+TGG | - | chr1_1:71712793-71712812 | Msa0041380:three_prime_UTR | 15.0% |
| !!! | ATTTTTTTTTTTTTAGTGGT+GGG | - | chr1_1:71712797-71712816 | Msa0041380:exon | 15.0% |
| !!! | AACTTAAGCTATATTTTTAT+CGG | - | chr1_1:71713830-71713849 | Msa0041380:intron | 15.0% |
| !!! | TTTTAAAAAGGTTTCATTTA+TGG | - | chr1_1:71714144-71714163 | Msa0041380:intron | 15.0% |
| !! | TTAATCTAAATAATTTGGTT+AGG | - | chr1_1:71714612-71714631 | Msa0041380:intron | 15.0% |
| !! | TATTGTAATTTATCTATTCA+TGG | + | chr1_1:71715031-71715050 | None:intergenic | 15.0% |
| !! | AACTTGAAAAAATGAAAAAA+AGG | + | chr1_1:71715520-71715539 | None:intergenic | 15.0% |
| !! | AAATTTGAAAGGAAAAAAAA+CGG | + | chr1_1:71716255-71716274 | None:intergenic | 15.0% |
| !!! | TCTTTAAGATTTATATTGTT+GGG | - | chr1_1:71716503-71716522 | Msa0041380:intron | 15.0% |
| !! | CTTCATAAATATTTGAAAAT+AGG | + | chr1_1:71717273-71717292 | None:intergenic | 15.0% |
| !!! | CTATTTTCAAATATTTATGA+AGG | - | chr1_1:71717271-71717290 | Msa0041380:CDS | 15.0% |
| !!! | CTAAAATATTTGTTGAAATA+TGG | - | chr1_1:71717562-71717581 | Msa0041380:five_prime_UTR | 15.0% |
| !! | ATGATCAAAAAGAAAATCAT+TGG | + | chr1_1:71712737-71712756 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTTTTTAGTGG+TGG | - | chr1_1:71712796-71712815 | Msa0041380:exon | 20.0% |
| !!! | TTTTTTTTTTTTTAGTGGTG+GGG | - | chr1_1:71712798-71712817 | Msa0041380:exon | 20.0% |
| !!! | AAACTCTGTTTTTCTTTTTT+TGG | - | chr1_1:71712905-71712924 | Msa0041380:intron | 20.0% |
| !!! | TTCTTCTTTTATAACATTCA+TGG | - | chr1_1:71714382-71714401 | Msa0041380:intron | 20.0% |
| !! | AATCGTTAGTATTATTAGTT+TGG | - | chr1_1:71714415-71714434 | Msa0041380:intron | 20.0% |
| !!! | ATCGTTAGTATTATTAGTTT+GGG | - | chr1_1:71714416-71714435 | Msa0041380:intron | 20.0% |
| !! | TGTGGTTAATCTAAATAATT+TGG | - | chr1_1:71714607-71714626 | Msa0041380:intron | 20.0% |
| !! | ATCAAATTTCTTAAAGAACA+AGG | - | chr1_1:71714776-71714795 | Msa0041380:CDS | 20.0% |
| !! | CATTTGGTATATAACATTAT+TGG | + | chr1_1:71714832-71714851 | None:intergenic | 20.0% |
| !! | AATCCTTCATTAATGAAAAA+GGG | + | chr1_1:71715190-71715209 | None:intergenic | 20.0% |
| !! | AAATCCTTCATTAATGAAAA+AGG | + | chr1_1:71715191-71715210 | None:intergenic | 20.0% |
| !!! | TCAACTATTTTTGTACTTTT+TGG | - | chr1_1:71715477-71715496 | Msa0041380:intron | 20.0% |
| !! | GTATATTATATACTAGCTAT+TGG | - | chr1_1:71715781-71715800 | Msa0041380:intron | 20.0% |
| !!! | TCTTGTTTTCCTTTTTTATT+TGG | - | chr1_1:71716461-71716480 | Msa0041380:intron | 20.0% |
| !!! | CTTGTTTTCCTTTTTTATTT+GGG | - | chr1_1:71716462-71716481 | Msa0041380:intron | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | - | chr1_1:71716502-71716521 | Msa0041380:intron | 20.0% |
| !!! | CTTTAAGATTTATATTGTTG+GGG | - | chr1_1:71716504-71716523 | Msa0041380:intron | 20.0% |
| ! | TATAGAAAAGAAGAGGAATT+AGG | + | chr1_1:71712350-71712369 | None:intergenic | 25.0% |
| !!! | ATGGTTTTATAGAAAAGAAG+AGG | + | chr1_1:71712357-71712376 | None:intergenic | 25.0% |
| ! | TGTGTGTGTGTAATTTATAA+TGG | + | chr1_1:71712376-71712395 | None:intergenic | 25.0% |
| ! | TTATGGAAATTGAGAATGAT+GGG | + | chr1_1:71712432-71712451 | None:intergenic | 25.0% |
| ! | ATTATGGAAATTGAGAATGA+TGG | + | chr1_1:71712433-71712452 | None:intergenic | 25.0% |
| ! | TCATTCTCAATTTCCATAAT+CGG | - | chr1_1:71712433-71712452 | Msa0041380:three_prime_UTR | 25.0% |
| ! | GAAATGAAATTTATCAATCG+CGG | + | chr1_1:71712461-71712480 | None:intergenic | 25.0% |
| ! | AAAGATTTGATCTTTGAATC+AGG | - | chr1_1:71712510-71712529 | Msa0041380:three_prime_UTR | 25.0% |
| ! | AAGATTTGATCTTTGAATCA+GGG | - | chr1_1:71712511-71712530 | Msa0041380:three_prime_UTR | 25.0% |
| ! | AAGAAAAACAGAGTTTACAA+TGG | + | chr1_1:71712901-71712920 | None:intergenic | 25.0% |
| !!! | CTTTTGTTGTTACTTTTTGT+CGG | - | chr1_1:71712930-71712949 | Msa0041380:intron | 25.0% |
| !! | TACAAGAAATCTAAAAGTGT+CGG | + | chr1_1:71713094-71713113 | None:intergenic | 25.0% |
| ! | ATTGTTCATAAGAAAGATAC+CGG | - | chr1_1:71713248-71713267 | Msa0041380:intron | 25.0% |
| !! | TTCCTTGTAATTTTAAATCC+CGG | + | chr1_1:71713270-71713289 | None:intergenic | 25.0% |
| !! | TATAATTTGTCTTTGTGAGA+TGG | - | chr1_1:71713291-71713310 | Msa0041380:intron | 25.0% |
| !!! | TAATTTTTTACGAGAATCAG+AGG | - | chr1_1:71713314-71713333 | Msa0041380:CDS | 25.0% |
| ! | AAAACTTACATGACTTTACA+TGG | - | chr1_1:71713397-71713416 | Msa0041380:CDS | 25.0% |
| ! | CAAATCAATATTGTCAACTA+TGG | + | chr1_1:71713696-71713715 | None:intergenic | 25.0% |
| !! | CATAGTTGACAATATTGATT+TGG | - | chr1_1:71713694-71713713 | Msa0041380:intron | 25.0% |
| !!! | AATATTGATTTGGATAGTCA+AGG | - | chr1_1:71713704-71713723 | Msa0041380:intron | 25.0% |
| !!! | ATTTTTATCGGTTCAATGTT+TGG | - | chr1_1:71713842-71713861 | Msa0041380:intron | 25.0% |
| !! | CTGCATTACACATAATTTTT+AGG | + | chr1_1:71713963-71713982 | None:intergenic | 25.0% |
| ! | CTAAAAATTATGTGTAATGC+AGG | - | chr1_1:71713961-71713980 | Msa0041380:intron | 25.0% |
| ! | TAAATAATTTGGTTAGGCAT+TGG | - | chr1_1:71714618-71714637 | Msa0041380:intron | 25.0% |
| ! | ATCTATAAAATAACCAGACA+CGG | + | chr1_1:71714858-71714877 | None:intergenic | 25.0% |
| ! | AATAATACATTAAGTACACG+AGG | - | chr1_1:71714930-71714949 | Msa0041380:intron | 25.0% |
| !! | AAAAAGTCAAATTTCTGAAG+AGG | + | chr1_1:71714967-71714986 | None:intergenic | 25.0% |
| ! | ATCCTTCATTAATGAAAAAG+GGG | + | chr1_1:71715189-71715208 | None:intergenic | 25.0% |
| ! | TTTCATTAATGAAGGATTTC+AGG | - | chr1_1:71715192-71715211 | Msa0041380:intron | 25.0% |
| !!! | CTTAACTACTGTTGTTTTAT+AGG | - | chr1_1:71715581-71715600 | Msa0041380:intron | 25.0% |
| ! | CTAGAATATATCTGGTTAAT+AGG | - | chr1_1:71715748-71715767 | Msa0041380:intron | 25.0% |
| !! | ATAACAGTGTTGTTAAATAG+CGG | - | chr1_1:71715836-71715855 | Msa0041380:intron | 25.0% |
| !! | TTGACAACATTTTGTACAAA+TGG | + | chr1_1:71715920-71715939 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTAGCCAAAGAT+TGG | - | chr1_1:71716100-71716119 | Msa0041380:intron | 25.0% |
| ! | CTAAATAGTAAACCAATCTT+TGG | + | chr1_1:71716115-71716134 | None:intergenic | 25.0% |
| ! | TTTGCAACTGAAAATTTGAA+AGG | + | chr1_1:71716266-71716285 | None:intergenic | 25.0% |
| ! | AGTTGAAATGTTTCATCTTA+TGG | + | chr1_1:71716710-71716729 | None:intergenic | 25.0% |
| ! | TAGATATGATTCGTGAATAT+GGG | - | chr1_1:71716914-71716933 | Msa0041380:intron | 25.0% |
| ! | ATTGATATCAATTACTTTCC+TGG | - | chr1_1:71716958-71716977 | Msa0041380:intron | 25.0% |
| ! | GTTTATAGACAATGTTGTTA+AGG | + | chr1_1:71717515-71717534 | None:intergenic | 25.0% |
| ! | TAACAACATTGTCTATAAAC+TGG | - | chr1_1:71717515-71717534 | Msa0041380:five_prime_UTR | 25.0% |
| ! | AAAGTTTGCACTACTTTATT+TGG | + | chr1_1:71717663-71717682 | None:intergenic | 25.0% |
| !!! | TGTGGATTGGGATTTTTTTT+GGG | + | chr1_1:71712297-71712316 | None:intergenic | 30.0% |
| ! | AGAAAGAAAAAGTGTGGATT+GGG | + | chr1_1:71712309-71712328 | None:intergenic | 30.0% |
| ATTGTTGTGAGTGATGAAAT+TGG | + | chr1_1:71712404-71712423 | None:intergenic | 30.0% | |
| AGATTTGATCTTTGAATCAG+GGG | - | chr1_1:71712512-71712531 | Msa0041380:three_prime_UTR | 30.0% | |
| ! | ATTTTCGGTATGAGACTAAA+CGG | - | chr1_1:71712536-71712555 | Msa0041380:three_prime_UTR | 30.0% |
| ! | ACAATTTTCTGACCCAAAAA+CGG | + | chr1_1:71712623-71712642 | None:intergenic | 30.0% |
| CTTGCAAGAGAAATGAAATT+TGG | + | chr1_1:71712692-71712711 | None:intergenic | 30.0% | |
| CAAATTTCATTTCTCTTGCA+AGG | - | chr1_1:71712690-71712709 | Msa0041380:three_prime_UTR | 30.0% | |
| !!! | TGTTACTTTTTGTCGGTATA+TGG | - | chr1_1:71712937-71712956 | Msa0041380:intron | 30.0% |
| TTCTTGTAAACATACCAAAC+TGG | - | chr1_1:71713106-71713125 | Msa0041380:intron | 30.0% | |
| !! | GGTAATCTTGTTATTGTCTT+TGG | - | chr1_1:71713139-71713158 | Msa0041380:intron | 30.0% |
| ! | CAAAGGTTGAGCATAAATTT+TGG | + | chr1_1:71713189-71713208 | None:intergenic | 30.0% |
| CAAAATTTATGCTCAACCTT+TGG | - | chr1_1:71713187-71713206 | Msa0041380:CDS | 30.0% | |
| TTGTTCATAAGAAAGATACC+GGG | - | chr1_1:71713249-71713268 | Msa0041380:intron | 30.0% | |
| ! | TACCGGGATTTAAAATTACA+AGG | - | chr1_1:71713265-71713284 | Msa0041380:intron | 30.0% |
| ! | TTGACTCTTGATCTTTTGAT+TGG | - | chr1_1:71713454-71713473 | Msa0041380:CDS | 30.0% |
| TCAAATTCCACAACACTATT+AGG | + | chr1_1:71713580-71713599 | None:intergenic | 30.0% | |
| ! | ATATTGTCAACTATGGATTG+CGG | + | chr1_1:71713689-71713708 | None:intergenic | 30.0% |
| ! | ATATCAAACAAGAGCACAAA+AGG | + | chr1_1:71713736-71713755 | None:intergenic | 30.0% |
| AAATTATTAACACTCAGCAG+TGG | - | chr1_1:71713783-71713802 | Msa0041380:intron | 30.0% | |
| !! | TACATGGTTCAAAGTTTTGA+TGG | - | chr1_1:71713912-71713931 | Msa0041380:intron | 30.0% |
| !! | CACATAATTTTTAGGCATTC+AGG | + | chr1_1:71713955-71713974 | None:intergenic | 30.0% |
| TTATGCAAGACAATGTCAAA+TGG | + | chr1_1:71714044-71714063 | None:intergenic | 30.0% | |
| ATTTGACATTGTCTTGCATA+AGG | - | chr1_1:71714043-71714062 | Msa0041380:intron | 30.0% | |
| !! | TTATGGTTTTGCTGAATTTG+TGG | - | chr1_1:71714161-71714180 | Msa0041380:intron | 30.0% |
| ATTTGTTCTTTCCAGTTGTT+AGG | - | chr1_1:71714261-71714280 | Msa0041380:intron | 30.0% | |
| TACAAGTACAATGTGAAAGT+AGG | + | chr1_1:71714336-71714355 | None:intergenic | 30.0% | |
| AAATTATGTCAGAAGTTGTG+TGG | + | chr1_1:71714495-71714514 | None:intergenic | 30.0% | |
| ! | TTGTTTGAATACTTGGTTTG+GGG | + | chr1_1:71714572-71714591 | None:intergenic | 30.0% |
| CTTGTTTGAATACTTGGTTT+GGG | + | chr1_1:71714573-71714592 | None:intergenic | 30.0% | |
| ACTTGTTTGAATACTTGGTT+TGG | + | chr1_1:71714574-71714593 | None:intergenic | 30.0% | |
| CAGACAATAATTCGTTCTTT+GGG | + | chr1_1:71714656-71714675 | None:intergenic | 30.0% | |
| ACAGACAATAATTCGTTCTT+TGG | + | chr1_1:71714657-71714676 | None:intergenic | 30.0% | |
| ! | ACGAATTATTGTCTGTCTTT+TGG | - | chr1_1:71714661-71714680 | Msa0041380:CDS | 30.0% |
| TAGCGACTATCACAATAATA+TGG | - | chr1_1:71714746-71714765 | Msa0041380:CDS | 30.0% | |
| ACTATCACAATAATATGGCA+TGG | - | chr1_1:71714751-71714770 | Msa0041380:CDS | 30.0% | |
| AATTTCTTAAAGAACAAGGC+TGG | - | chr1_1:71714780-71714799 | Msa0041380:CDS | 30.0% | |
| AGATATAATGAAAGCTGCAT+CGG | - | chr1_1:71714878-71714897 | Msa0041380:intron | 30.0% | |
| ATCTATTCATGGAACTATTC+AGG | + | chr1_1:71715020-71715039 | None:intergenic | 30.0% | |
| GCTATGAATATTTGGAAGAA+AGG | + | chr1_1:71715071-71715090 | None:intergenic | 30.0% | |
| TACAAACTTCATGGAGAATT+TGG | + | chr1_1:71715139-71715158 | None:intergenic | 30.0% | |
| CCATCAAAATACAAACTTCA+TGG | + | chr1_1:71715148-71715167 | None:intergenic | 30.0% | |
| !! | CCATGAAGTTTGTATTTTGA+TGG | - | chr1_1:71715145-71715164 | Msa0041380:intron | 30.0% |
| !! | TTCCCCTTTTTCATTAATGA+AGG | - | chr1_1:71715184-71715203 | Msa0041380:intron | 30.0% |
| TGTAAATGTTGAATTGCATC+AGG | + | chr1_1:71715251-71715270 | None:intergenic | 30.0% | |
| TACAATCCTAAAACTTTCAG+GGG | + | chr1_1:71715385-71715404 | None:intergenic | 30.0% | |
| GTACAATCCTAAAACTTTCA+GGG | + | chr1_1:71715386-71715405 | None:intergenic | 30.0% | |
| TGTACAATCCTAAAACTTTC+AGG | + | chr1_1:71715387-71715406 | None:intergenic | 30.0% | |
| ACTTCATAAGGAATAGTAGA+TGG | + | chr1_1:71715653-71715672 | None:intergenic | 30.0% | |
| AATCAAAGATACACACCTAA+CGG | + | chr1_1:71715698-71715717 | None:intergenic | 30.0% | |
| TCTCTAGACTAGAATATATC+TGG | - | chr1_1:71715740-71715759 | Msa0041380:intron | 30.0% | |
| ! | AGAACCTTGTTTGTATCATT+CGG | - | chr1_1:71716061-71716080 | Msa0041380:intron | 30.0% |
| ATATCCGAATGATACAAACA+AGG | + | chr1_1:71716068-71716087 | None:intergenic | 30.0% | |
| AATCTTCTGATTATCCTGAT+TGG | - | chr1_1:71716168-71716187 | Msa0041380:intron | 30.0% | |
| ATCTTCTGATTATCCTGATT+GGG | - | chr1_1:71716169-71716188 | Msa0041380:intron | 30.0% | |
| ! | ATATTTGAAACAACCCAATC+AGG | + | chr1_1:71716185-71716204 | None:intergenic | 30.0% |
| AATAACACACAGAATGATTG+CGG | + | chr1_1:71716423-71716442 | None:intergenic | 30.0% | |
| TGCAATGTCCCAAATAAAAA+AGG | + | chr1_1:71716473-71716492 | None:intergenic | 30.0% | |
| !!! | TTTTTTATTTGGGACATTGC+AGG | - | chr1_1:71716472-71716491 | Msa0041380:intron | 30.0% |
| TATTGTTGGGGAATACATAA+AGG | - | chr1_1:71716516-71716535 | Msa0041380:intron | 30.0% | |
| !!! | GAATTTTTTTGGAATCTCAC+CGG | + | chr1_1:71716671-71716690 | None:intergenic | 30.0% |
| TGAAATGTTTCATCTTATGG+TGG | + | chr1_1:71716707-71716726 | None:intergenic | 30.0% | |
| GTAGATATGATTCGTGAATA+TGG | - | chr1_1:71716913-71716932 | Msa0041380:intron | 30.0% | |
| AATGACATAAAACACATCCT+TGG | + | chr1_1:71716941-71716960 | None:intergenic | 30.0% | |
| TATAACTTATCTGCATTCCA+TGG | - | chr1_1:71716985-71717004 | Msa0041380:intron | 30.0% | |
| AGCATGAACATTCTATTCAT+TGG | + | chr1_1:71717459-71717478 | None:intergenic | 30.0% | |
| AATAGAATGTTCATGCTTAG+TGG | - | chr1_1:71717462-71717481 | Msa0041380:five_prime_UTR | 30.0% | |
| !!! | TATTTTAGCAGCATTATCCT+TGG | + | chr1_1:71717550-71717569 | None:intergenic | 30.0% |
| !! | GGTACTTTTTGGTAGAAATT+GGG | + | chr1_1:71717617-71717636 | None:intergenic | 30.0% |
| !! | AGGTACTTTTTGGTAGAAAT+TGG | + | chr1_1:71717618-71717637 | None:intergenic | 30.0% |
| AAGCATATAACTAGCTACAA+AGG | + | chr1_1:71717638-71717657 | None:intergenic | 30.0% | |
| !!! | GTGTGGATTGGGATTTTTTT+TGG | + | chr1_1:71712298-71712317 | None:intergenic | 35.0% |
| ! | GAGAAAGAAAAAGTGTGGAT+TGG | + | chr1_1:71712310-71712329 | None:intergenic | 35.0% |
| !!! | CTTTGAATCAGGGGTATTTT+CGG | - | chr1_1:71712521-71712540 | Msa0041380:three_prime_UTR | 35.0% |
| AGAAGAAGAAGAAGAAGTGA+TGG | - | chr1_1:71712574-71712593 | Msa0041380:three_prime_UTR | 35.0% | |
| TTGGGTCAGAAAATTGTTGT+TGG | - | chr1_1:71712626-71712645 | Msa0041380:three_prime_UTR | 35.0% | |
| ! | TGGGTCAGAAAATTGTTGTT+GGG | - | chr1_1:71712627-71712646 | Msa0041380:three_prime_UTR | 35.0% |
| TTGAGCTACAGACATTACAT+CGG | + | chr1_1:71713043-71713062 | None:intergenic | 35.0% | |
| !! | TACCAAACTGGTTTGTTTCT+TGG | - | chr1_1:71713118-71713137 | Msa0041380:intron | 35.0% |
| TACCAAGAAACAAACCAGTT+TGG | + | chr1_1:71713123-71713142 | None:intergenic | 35.0% | |
| !! | CAATGTATGAGTTTTGACCT+CGG | + | chr1_1:71713232-71713251 | None:intergenic | 35.0% |
| ! | AATGAGGGCATAAATGATTG+CGG | + | chr1_1:71713513-71713532 | None:intergenic | 35.0% |
| AAAACCTTGTCGCTAAATGA+GGG | + | chr1_1:71713528-71713547 | None:intergenic | 35.0% | |
| TCTATGCAAGAATGCTATAG+AGG | + | chr1_1:71713643-71713662 | None:intergenic | 35.0% | |
| TTGAACCATGTATTCAACCA+AGG | + | chr1_1:71713904-71713923 | None:intergenic | 35.0% | |
| TCTGATCATGATTCATGATG+AGG | + | chr1_1:71714534-71714553 | None:intergenic | 35.0% | |
| !! | TGTTTGAATACTTGGTTTGG+GGG | + | chr1_1:71714571-71714590 | None:intergenic | 35.0% |
| ACCAAGTATTCAAACAAGTG+AGG | - | chr1_1:71714575-71714594 | Msa0041380:intron | 35.0% | |
| TCCTCACTTGTTTGAATACT+TGG | + | chr1_1:71714579-71714598 | None:intergenic | 35.0% | |
| !! | CAAGTGAGGATTTACTTTTG+TGG | - | chr1_1:71714589-71714608 | Msa0041380:intron | 35.0% |
| !! | ATAATTTGGTTAGGCATTGG+TGG | - | chr1_1:71714621-71714640 | Msa0041380:intron | 35.0% |
| TATTCATGGAACTATTCAGG+AGG | + | chr1_1:71715017-71715036 | None:intergenic | 35.0% | |
| TTCGGTGAGCTATGAATATT+TGG | + | chr1_1:71715079-71715098 | None:intergenic | 35.0% | |
| !!! | TGTATTTTGATGGAGCTGAT+TGG | - | chr1_1:71715155-71715174 | Msa0041380:intron | 35.0% |
| AGGATCAAGAACGAATACAT+CGG | + | chr1_1:71715228-71715247 | None:intergenic | 35.0% | |
| AAATGTTGAATTGCATCAGG+AGG | + | chr1_1:71715248-71715267 | None:intergenic | 35.0% | |
| CTAAACTTATCTGAGTGCAA+TGG | - | chr1_1:71715305-71715324 | Msa0041380:intron | 35.0% | |
| !! | CAAGTTGATTATGTATCGCA+TGG | - | chr1_1:71715534-71715553 | Msa0041380:intron | 35.0% |
| !!! | CTACTGTTGTTTTATAGGCA+AGG | - | chr1_1:71715586-71715605 | Msa0041380:intron | 35.0% |
| !!! | TGTTGTTTTATAGGCAAGGT+TGG | - | chr1_1:71715590-71715609 | Msa0041380:intron | 35.0% |
| TTGTAATAACTAGCTGACGA+GGG | + | chr1_1:71715619-71715638 | None:intergenic | 35.0% | |
| TTTGTAATAACTAGCTGACG+AGG | + | chr1_1:71715620-71715639 | None:intergenic | 35.0% | |
| TTTGTACAAATGGCATATCG+TGG | + | chr1_1:71715910-71715929 | None:intergenic | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr1_1:71715933-71715952 | Msa0041380:CDS | 35.0% | |
| !!! | AGTTGACTTGTGCATTTTCA+TGG | - | chr1_1:71716137-71716156 | Msa0041380:intron | 35.0% |
| CTACAAGAGTTTGTCAATCA+TGG | - | chr1_1:71716377-71716396 | Msa0041380:intron | 35.0% | |
| CACATGAAACTCTTGGAAAA+CGG | + | chr1_1:71716606-71716625 | None:intergenic | 35.0% | |
| AATGTTTCATCTTATGGTGG+TGG | + | chr1_1:71716704-71716723 | None:intergenic | 35.0% | |
| AAAAGAGCTTCGTCATAGAT+TGG | - | chr1_1:71716786-71716805 | Msa0041380:intron | 35.0% | |
| TGCAACCATATTTCTTTCCT+AGG | - | chr1_1:71716833-71716852 | Msa0041380:intron | 35.0% | |
| GTATTAGTAAATCATCGCCT+AGG | + | chr1_1:71716853-71716872 | None:intergenic | 35.0% | |
| GCAGATAAGTTATACTTACC+AGG | + | chr1_1:71716979-71716998 | None:intergenic | 35.0% | |
| ! | ATTTTTCCATACCCTGCATT+CGG | + | chr1_1:71717065-71717084 | None:intergenic | 35.0% |
| TCTTACACTTGTTCTGCTTT+AGG | + | chr1_1:71717127-71717146 | None:intergenic | 35.0% | |
| !!! | CTAGCTACAAAGGTACTTTT+TGG | + | chr1_1:71717628-71717647 | None:intergenic | 35.0% |
| GCAGAGAGAAAGAAAAAGTG+TGG | + | chr1_1:71712315-71712334 | None:intergenic | 40.0% | |
| CTGTGCAGTGTATTATTTGC+TGG | - | chr1_1:71712851-71712870 | Msa0041380:CDS | 40.0% | |
| CTCAATATGGACAACTCCAA+AGG | + | chr1_1:71713206-71713225 | None:intergenic | 40.0% | |
| TTGTCCATATTGAGAATCCG+AGG | - | chr1_1:71713212-71713231 | Msa0041380:intron | 40.0% | |
| TTGACCTCGGATTCTCAATA+TGG | + | chr1_1:71713219-71713238 | None:intergenic | 40.0% | |
| GAAAACCTTGTCGCTAAATG+AGG | + | chr1_1:71713529-71713548 | None:intergenic | 40.0% | |
| ! | ACTATGGATTGCGGAAATAG+AGG | + | chr1_1:71713680-71713699 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGTTACCACTGT+CGG | - | chr1_1:71713857-71713876 | Msa0041380:intron | 40.0% |
| CATGTATTCAACCAAGGAAG+TGG | + | chr1_1:71713898-71713917 | None:intergenic | 40.0% | |
| CACTTCCTTGGTTGAATACA+TGG | - | chr1_1:71713896-71713915 | Msa0041380:intron | 40.0% | |
| TTATGTGTAATGCAGGAGCA+AGG | - | chr1_1:71713968-71713987 | Msa0041380:intron | 40.0% | |
| TATGTGTAATGCAGGAGCAA+GGG | - | chr1_1:71713969-71713988 | Msa0041380:intron | 40.0% | |
| TGGGAGTTGAGTATATGACA+TGG | - | chr1_1:71714435-71714454 | Msa0041380:intron | 40.0% | |
| GAGTTGAGTATATGACATGG+AGG | - | chr1_1:71714438-71714457 | Msa0041380:intron | 40.0% | |
| GTATATGACATGGAGGTGAT+TGG | - | chr1_1:71714445-71714464 | Msa0041380:intron | 40.0% | |
| TATAATGAAAGCTGCATCGG+AGG | - | chr1_1:71714881-71714900 | Msa0041380:intron | 40.0% | |
| ATAATGAAAGCTGCATCGGA+GGG | - | chr1_1:71714882-71714901 | Msa0041380:intron | 40.0% | |
| CATTAAGTACACGAGGAATC+TGG | - | chr1_1:71714937-71714956 | Msa0041380:intron | 40.0% | |
| GGATCAAGAACGAATACATC+GGG | + | chr1_1:71715227-71715246 | None:intergenic | 40.0% | |
| CTAAAACTTTCAGGGGAGAT+TGG | + | chr1_1:71715378-71715397 | None:intergenic | 40.0% | |
| ! | CAATCTCCCCTGAAAGTTTT+AGG | - | chr1_1:71715376-71715395 | Msa0041380:intron | 40.0% |
| CGTACATCTTGCTCTTGTAT+TGG | - | chr1_1:71715445-71715464 | Msa0041380:intron | 40.0% | |
| CTTATGAAGTCACCAAAGCT+GGG | - | chr1_1:71715663-71715682 | Msa0041380:CDS | 40.0% | |
| !! | TAGCAGCTATAGCGGATTAA+CGG | - | chr1_1:71715941-71715960 | Msa0041380:CDS | 40.0% |
| AGTTGCAAAACCTCTAGTTG+TGG | - | chr1_1:71716277-71716296 | Msa0041380:intron | 40.0% | |
| ACAAACTCTTGTAGAACCAG+TGG | + | chr1_1:71716371-71716390 | None:intergenic | 40.0% | |
| ! | TTTATTTGGGACATTGCAGG+TGG | - | chr1_1:71716475-71716494 | Msa0041380:intron | 40.0% |
| GGGAATACATAAAGGTTGTG+AGG | - | chr1_1:71716524-71716543 | Msa0041380:intron | 40.0% | |
| AGCTCGCGTTTACTGATATT+AGG | + | chr1_1:71716562-71716581 | None:intergenic | 40.0% | |
| GATCTTGATCCTAGTATTGC+CGG | - | chr1_1:71716649-71716668 | Msa0041380:intron | 40.0% | |
| !!! | GTGGGAAAGGGGAATTTTTT+TGG | + | chr1_1:71716682-71716701 | None:intergenic | 40.0% |
| !! | TTTCATCTTATGGTGGTGGT+GGG | + | chr1_1:71716700-71716719 | None:intergenic | 40.0% |
| CATCGCCTAGGAAAGAAATA+TGG | + | chr1_1:71716841-71716860 | None:intergenic | 40.0% | |
| TGAATTGCAATGCCGTCTAT+AGG | - | chr1_1:71716873-71716892 | Msa0041380:intron | 40.0% | |
| GAATTGCAATGCCGTCTATA+GGG | - | chr1_1:71716874-71716893 | Msa0041380:intron | 40.0% | |
| TTGATTTCTGTCAGAGACCA+TGG | + | chr1_1:71717005-71717024 | None:intergenic | 40.0% | |
| ! | TTTACGGTTTTTCCGAATGC+AGG | - | chr1_1:71717050-71717069 | Msa0041380:intron | 40.0% |
| ! | TTACGGTTTTTCCGAATGCA+GGG | - | chr1_1:71717051-71717070 | Msa0041380:intron | 40.0% |
| CTTCCAACTTCTCTTGCTTT+AGG | + | chr1_1:71717162-71717181 | None:intergenic | 40.0% | |
| CTAAAGCAAGAGAAGTTGGA+AGG | - | chr1_1:71717160-71717179 | Msa0041380:intron | 40.0% | |
| ATCAATCGCGGAACCGATTA+TGG | + | chr1_1:71712449-71712468 | None:intergenic | 45.0% | |
| ! | AGAAGTGATGGCGAAATCTG+AGG | - | chr1_1:71712586-71712605 | Msa0041380:three_prime_UTR | 45.0% |
| !! | GTGAGTACGACACCGTTTTT+GGG | - | chr1_1:71712608-71712627 | Msa0041380:three_prime_UTR | 45.0% |
| !! | CTAAAAGTGTCGGTCACGAA+TGG | + | chr1_1:71713084-71713103 | None:intergenic | 45.0% |
| TATGCCCTCATTTAGCGACA+AGG | - | chr1_1:71713521-71713540 | Msa0041380:intron | 45.0% | |
| GGCTACAGCACAGATGATTT+GGG | + | chr1_1:71713559-71713578 | None:intergenic | 45.0% | |
| AGGCTACAGCACAGATGATT+TGG | + | chr1_1:71713560-71713579 | None:intergenic | 45.0% | |
| GCTGTAGCCTAATAGTGTTG+TGG | - | chr1_1:71713570-71713589 | Msa0041380:intron | 45.0% | |
| GTGGTTGATCTCAGTAGAAG+TGG | - | chr1_1:71713802-71713821 | Msa0041380:intron | 45.0% | |
| ! | TGTTTGGAGTTACCACTGTC+GGG | - | chr1_1:71713858-71713877 | Msa0041380:intron | 45.0% |
| ! | GTTTTACCTGACCACTTCCT+TGG | - | chr1_1:71713884-71713903 | Msa0041380:intron | 45.0% |
| ATTCAACCAAGGAAGTGGTC+AGG | + | chr1_1:71713893-71713912 | None:intergenic | 45.0% | |
| ATGTGTAATGCAGGAGCAAG+GGG | - | chr1_1:71713970-71713989 | Msa0041380:intron | 45.0% | |
| AACAAGCCACTGTCAGAACA+AGG | - | chr1_1:71714017-71714036 | Msa0041380:intron | 45.0% | |
| AATGGACCTTGTTCTGACAG+TGG | + | chr1_1:71714026-71714045 | None:intergenic | 45.0% | |
| TTCTTTCCAGTTGTTAGGCG+AGG | - | chr1_1:71714266-71714285 | Msa0041380:intron | 45.0% | |
| TGAAAGTAGGCTGAAGTGAG+TGG | + | chr1_1:71714323-71714342 | None:intergenic | 45.0% | |
| ATCCAGAAGATGTGGTTGTC+CGG | + | chr1_1:71714471-71714490 | None:intergenic | 45.0% | |
| TGTGTGGTATCCAGAAGATG+TGG | + | chr1_1:71714479-71714498 | None:intergenic | 45.0% | |
| ATACCAAATGCAACCGTGTC+TGG | - | chr1_1:71714842-71714861 | Msa0041380:intron | 45.0% | |
| TAACCAGACACGGTTGCATT+TGG | + | chr1_1:71714848-71714867 | None:intergenic | 45.0% | |
| GATGACTAACTTCTGACAGC+TGG | - | chr1_1:71714904-71714923 | Msa0041380:intron | 45.0% | |
| !! | CATCTTGAAGCATGGATTGG+CGG | + | chr1_1:71715277-71715296 | None:intergenic | 45.0% |
| CCACATCTTGAAGCATGGAT+TGG | + | chr1_1:71715280-71715299 | None:intergenic | 45.0% | |
| CCAATCCATGCTTCAAGATG+TGG | - | chr1_1:71715277-71715296 | Msa0041380:intron | 45.0% | |
| ATCCATGCTTCAAGATGTGG+TGG | - | chr1_1:71715280-71715299 | Msa0041380:intron | 45.0% | |
| ATCCACCACATCTTGAAGCA+TGG | + | chr1_1:71715285-71715304 | None:intergenic | 45.0% | |
| ! | CCAGCTTTGGTGACTTCATA+AGG | + | chr1_1:71715665-71715684 | None:intergenic | 45.0% |
| CCTTATGAAGTCACCAAAGC+TGG | - | chr1_1:71715662-71715681 | Msa0041380:CDS | 45.0% | |
| TAGCTATTGGCACCTTTCTG+CGG | - | chr1_1:71715794-71715813 | Msa0041380:intron | 45.0% | |
| AACCAATCAATGCCGCAGAA+AGG | + | chr1_1:71715809-71715828 | None:intergenic | 45.0% | |
| GTGTTGTCAATAGCAGGTCA+CGG | + | chr1_1:71716013-71716032 | None:intergenic | 45.0% | |
| TGACCTGCTATTGACAACAC+TGG | - | chr1_1:71716013-71716032 | Msa0041380:intron | 45.0% | |
| GCAAAACCTCTAGTTGTGGA+TGG | - | chr1_1:71716281-71716300 | Msa0041380:intron | 45.0% | |
| AACTCTTGTAGAACCAGTGG+AGG | + | chr1_1:71716368-71716387 | None:intergenic | 45.0% | |
| !! | GTTTCATCTTATGGTGGTGG+TGG | + | chr1_1:71716701-71716720 | None:intergenic | 45.0% |
| TCTCCAACAAAGGTCTTGGT+GGG | + | chr1_1:71716759-71716778 | None:intergenic | 45.0% | |
| TTTGCAAGCCTCTCCAACAA+AGG | + | chr1_1:71716769-71716788 | None:intergenic | 45.0% | |
| ACAAGCGAAGTCCCTATAGA+CGG | + | chr1_1:71716888-71716907 | None:intergenic | 45.0% | |
| GATTCGTGAATATGGGACCA+AGG | - | chr1_1:71716921-71716940 | Msa0041380:intron | 45.0% | |
| ! | GTTTTTCCGAATGCAGGGTA+TGG | - | chr1_1:71717056-71717075 | Msa0041380:intron | 45.0% |
| CTGCCTAAAGCAAGAGAAGT+TGG | - | chr1_1:71717156-71717175 | Msa0041380:intron | 45.0% | |
| TAAACTGGCACGAAATGCCA+AGG | - | chr1_1:71717530-71717549 | Msa0041380:five_prime_UTR | 45.0% | |
| TGGTAGAAATTGGGACAGAG+TGG | + | chr1_1:71717608-71717627 | None:intergenic | 45.0% | |
| !!! | TGTTTTTTTTTTTTTTAAAA+AGG | - | chr1_1:71714132-71714151 | Msa0041380:intron | 5.0% |
| ! | GGTGAGTACGACACCGTTTT+TGG | - | chr1_1:71712607-71712626 | Msa0041380:three_prime_UTR | 50.0% |
| ! | GTTTGGAGTTACCACTGTCG+GGG | - | chr1_1:71713859-71713878 | Msa0041380:intron | 50.0% |
| ! | TTTGGAGTTACCACTGTCGG+GGG | - | chr1_1:71713860-71713879 | Msa0041380:intron | 50.0% |
| TCCAGTTGTTAGGCGAGGAA+TGG | - | chr1_1:71714271-71714290 | Msa0041380:intron | 50.0% | |
| GGAATGGCGAGAGATCATTG+AGG | - | chr1_1:71714287-71714306 | Msa0041380:CDS | 50.0% | |
| ATGACATGGAGGTGATTGGC+CGG | - | chr1_1:71714449-71714468 | Msa0041380:intron | 50.0% | |
| ! | ACAAGGCTGGCTGAGCTTAT+AGG | - | chr1_1:71714793-71714812 | Msa0041380:CDS | 50.0% |
| GCTGGCTGAGCTTATAGGTT+AGG | - | chr1_1:71714798-71714817 | Msa0041380:CDS | 50.0% | |
| !! | CACCTTTCTGCGGCATTGAT+TGG | - | chr1_1:71715804-71715823 | Msa0041380:intron | 50.0% |
| !! | TAGCGGATTAACGGCGCTAT+AGG | - | chr1_1:71715950-71715969 | Msa0041380:CDS | 50.0% |
| !! | AGCGGATTAACGGCGCTATA+GGG | - | chr1_1:71715951-71715970 | Msa0041380:CDS | 50.0% |
| GAGCCAGTGTTGTCAATAGC+AGG | + | chr1_1:71716019-71716038 | None:intergenic | 50.0% | |
| TTCAGAGCTTGAACCTCCAC+TGG | - | chr1_1:71716352-71716371 | Msa0041380:intron | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | + | chr1_1:71716613-71716632 | None:intergenic | 50.0% | |
| GGAATCTCACCGGCAATACT+AGG | + | chr1_1:71716661-71716680 | None:intergenic | 50.0% | |
| !! | TTATGGTGGTGGTGGGAAAG+GGG | + | chr1_1:71716693-71716712 | None:intergenic | 50.0% |
| !! | CTTATGGTGGTGGTGGGAAA+GGG | + | chr1_1:71716694-71716713 | None:intergenic | 50.0% |
| !! | TCTTATGGTGGTGGTGGGAA+AGG | + | chr1_1:71716695-71716714 | None:intergenic | 50.0% |
| ACACCCACCAAGACCTTTGT+TGG | - | chr1_1:71716753-71716772 | Msa0041380:intron | 50.0% | |
| CTCTCCAACAAAGGTCTTGG+TGG | + | chr1_1:71716760-71716779 | None:intergenic | 50.0% | |
| CACCAAGACCTTTGTTGGAG+AGG | - | chr1_1:71716758-71716777 | Msa0041380:intron | 50.0% | |
| AGCCTCTCCAACAAAGGTCT+TGG | + | chr1_1:71716763-71716782 | None:intergenic | 50.0% | |
| GTAAAGACGTGCTCGTAGTC+TGG | + | chr1_1:71717089-71717108 | None:intergenic | 50.0% | |
| TGTCGGTCACGAATGGAGCT+CGG | + | chr1_1:71713077-71713096 | None:intergenic | 55.0% | |
| AGGTAAAACTCCCCCGACAG+TGG | + | chr1_1:71713873-71713892 | None:intergenic | 55.0% | |
| GCCATTCCTCGCCTAACAAC+TGG | + | chr1_1:71714275-71714294 | None:intergenic | 55.0% | |
| CGGCAACTTCAACCCAGCTT+TGG | + | chr1_1:71715678-71715697 | None:intergenic | 55.0% | |
| ! | GCTGGGTTGAAGTTGCCGTT+AGG | - | chr1_1:71715680-71715699 | Msa0041380:CDS | 55.0% |
| ATAGCAGCGCTACAGCACAG+TGG | - | chr1_1:71715861-71715880 | Msa0041380:intron | 55.0% | |
| GCACTGCCATCCACAACTAG+AGG | + | chr1_1:71716290-71716309 | None:intergenic | 55.0% | |
| CGCGAGCTATCAAAAGTCGC+AGG | - | chr1_1:71716574-71716593 | Msa0041380:intron | 55.0% | |
| TCGGTCACGAATGGAGCTCG+GGG | + | chr1_1:71713075-71713094 | None:intergenic | 60.0% | |
| GTCGGTCACGAATGGAGCTC+GGG | + | chr1_1:71713076-71713095 | None:intergenic | 60.0% | |
| GGCCGGACAACCACATCTTC+TGG | - | chr1_1:71714466-71714485 | Msa0041380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 71712275 | 71717701 | 71712275 | ID=Msa0041380;Name=Msa0041380 |
| chr1_1 | mRNA | 71712275 | 71717701 | 71712275 | ID=Msa0041380-mRNA-1;Parent=Msa0041380;Name=Msa0041380-mRNA-1;_AED=0.17;_eAED=0.17;_QI=270|0.8|0.72|1|1|1|11|538|405 |
| chr1_1 | exon | 71712275 | 71712904 | 71712275 | ID=Msa0041380-mRNA-1:exon:23779;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71712997 | 71713081 | 71712997 | ID=Msa0041380-mRNA-1:exon:23778;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71713169 | 71713224 | 71713169 | ID=Msa0041380-mRNA-1:exon:23777;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71713306 | 71713482 | 71713306 | ID=Msa0041380-mRNA-1:exon:23776;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71713578 | 71713697 | 71713578 | ID=Msa0041380-mRNA-1:exon:23775;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71714275 | 71714373 | 71714275 | ID=Msa0041380-mRNA-1:exon:23774;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71714650 | 71714857 | 71714650 | ID=Msa0041380-mRNA-1:exon:23773;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71715397 | 71715457 | 71715397 | ID=Msa0041380-mRNA-1:exon:23772;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71715630 | 71715700 | 71715630 | ID=Msa0041380-mRNA-1:exon:23771;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71715912 | 71715993 | 71715912 | ID=Msa0041380-mRNA-1:exon:23770;Parent=Msa0041380-mRNA-1 |
| chr1_1 | exon | 71717265 | 71717701 | 71717265 | ID=Msa0041380-mRNA-1:exon:23769;Parent=Msa0041380-mRNA-1 |
| chr1_1 | five_prime_UTR | 71717432 | 71717701 | 71717432 | ID=Msa0041380-mRNA-1:five_prime_utr;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71717265 | 71717431 | 71717265 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71715912 | 71715993 | 71715912 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71715630 | 71715700 | 71715630 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71715397 | 71715457 | 71715397 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71714650 | 71714857 | 71714650 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71714275 | 71714373 | 71714275 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71713578 | 71713697 | 71713578 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71713306 | 71713482 | 71713306 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71713169 | 71713224 | 71713169 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71712997 | 71713081 | 71712997 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | CDS | 71712813 | 71712904 | 71712813 | ID=Msa0041380-mRNA-1:cds;Parent=Msa0041380-mRNA-1 |
| chr1_1 | three_prime_UTR | 71712275 | 71712812 | 71712275 | ID=Msa0041380-mRNA-1:three_prime_utr;Parent=Msa0041380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
