AlfalfaGEDB | Msa0041550

M. sativa cultivar zhongmu-4 / Msa0041550

KEGG: K07560|K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0041550	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041550	Msa0041600	0.846563	2.008232e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041550	MtrunA17_Chr7g0252101	60.586	444	147	9	10	437	1	432	5.19e-169	481
Msa0041550	MtrunA17_Chr1g0207351	70.286	350	95	4	97	437	17	366	1.03e-164	468
Msa0041550	MtrunA17_Chr3g0093911	68.946	351	103	4	92	437	1	350	2.45e-161	458
Msa0041550	MtrunA17_Chr4g0075971	56.613	431	147	8	34	437	185	602	4.57e-140	414
Msa0041550	MtrunA17_Chr3g0077801	59.942	347	131	4	95	434	4	349	1.80e-134	390
Msa0041550	MtrunA17_Chr3g0077901	57.542	358	140	7	88	436	17	371	6.08e-130	379
Msa0041550	MtrunA17_Chr6g0488101	48.124	453	187	11	24	437	12	455	3.37e-123	365
Msa0041550	MtrunA17_Chr3g0077851	58.580	338	128	7	108	436	1	335	9.19e-123	360
Msa0041550	MtrunA17_Chr6g0488271	50.369	407	159	8	69	437	14	415	1.33e-120	357
Msa0041550	MtrunA17_Chr3g0112311	54.318	359	145	5	92	435	1	355	4.88e-117	346

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 107 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATTAAGGATTACC+AGG	0.544235	1_1:+71992087	Msa0041550:CDS
AAAAGGAACGTGAAAACGCC+AGG	0.485831	1_1:-71991584	None:intergenic
AAAAGTTTATTGCTCGAAGA+TGG	0.381429	1_1:+71996108	Msa0041550:CDS
AAAGGAACGTGAAAACGCCA+GGG	0.643111	1_1:-71991583	None:intergenic
AAAGTTTATTGCTCGAAGAT+GGG	0.471695	1_1:+71996109	Msa0041550:CDS
AAATTAGTACCTTGAAGCTT+CGG	0.439148	1_1:-71991315	None:intergenic
AACACAAGCTTCCCTTCCCT+TGG	0.448630	1_1:+71991624	Msa0041550:five_prime_UTR
AACCATGAATTATGTCAAAC+CGG	0.456971	1_1:+71996645	Msa0041550:CDS
AACGACCAAGACAAATTCCT+CGG	0.591881	1_1:-71996320	None:intergenic
AAGCTACTGATCCAAGGGAA+GGG	0.617092	1_1:-71991635	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATACACCTTTGAATTGTAC+GGG	+	chr1_1:71991180-71991199	Msa0041550:five_prime_UTR	30.0%
GATTTGAGAGGAAATTCAAT+TGG	+	chr1_1:71991207-71991226	Msa0041550:five_prime_UTR	30.0%
TAAAAAGAGTAGATCGAGTA+GGG	-	chr1_1:71991265-71991284	None:intergenic	30.0%
ATAAAAAGAGTAGATCGAGT+AGG	-	chr1_1:71991266-71991285	None:intergenic	30.0%
AAATTAGTACCTTGAAGCTT+CGG	-	chr1_1:71991318-71991337	None:intergenic	30.0%
AAATTGAAGGAGAGAAATTC+CGG	-	chr1_1:71991448-71991467	None:intergenic	30.0%
CCAAAACAACAATGATTCAT+TGG	+	chr1_1:71991997-71992016	Msa0041550:CDS	30.0%
TTCATTGGCGTATCTTATTA+AGG	+	chr1_1:71992012-71992031	Msa0041550:CDS	30.0%
AAAACTCATTAAGGATTACC+AGG	+	chr1_1:71992087-71992106	Msa0041550:CDS	30.0%
TAACTCGTATAAGTCCTAAA+AGG	+	chr1_1:71992116-71992135	Msa0041550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	71991138	71997065	71991138	ID=Msa0041550;Name=Msa0041550
chr1_1	mRNA	71991138	71997065	71991138	ID=Msa0041550-mRNA-1;Parent=Msa0041550;Name=Msa0041550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=287\|1\|1\|1\|0\|0.25\|4\|141\|437
chr1_1	exon	71991138	71991327	71991138	ID=Msa0041550-mRNA-1:exon:23910;Parent=Msa0041550-mRNA-1
chr1_1	exon	71991575	71991701	71991575	ID=Msa0041550-mRNA-1:exon:23911;Parent=Msa0041550-mRNA-1
chr1_1	exon	71991986	71992220	71991986	ID=Msa0041550-mRNA-1:exon:23912;Parent=Msa0041550-mRNA-1
chr1_1	exon	71995876	71997065	71995876	ID=Msa0041550-mRNA-1:exon:23913;Parent=Msa0041550-mRNA-1
chr1_1	five_prime_UTR	71991138	71991327	71991138	ID=Msa0041550-mRNA-1:five_prime_utr;Parent=Msa0041550-mRNA-1
chr1_1	five_prime_UTR	71991575	71991671	71991575	ID=Msa0041550-mRNA-1:five_prime_utr;Parent=Msa0041550-mRNA-1
chr1_1	CDS	71991672	71991701	71991672	ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1	CDS	71991986	71992220	71991986	ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1	CDS	71995876	71996924	71995876	ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1	three_prime_UTR	71996925	71997065	71996925	ID=Msa0041550-mRNA-1:three_prime_utr;Parent=Msa0041550-mRNA-1

Gene Sequence

>Msa0041550

ATGCCGAGGACGCCAAAACCAAGTGCAATGTTGAAGATCCTCCAAAACAACAATGATTCATTGGCGTATCTTATTAAGGCAGTCAAAGATGAATTTCAATATAATAACACGGAAAAGTATAATGAGTTTTTAAAACTCATTAAGGATTACCAGGTTGGAATAACTCGTATAAGTCCTAAAAGGCATGGCCAGCTTATAAACATACTCAAAGCAAAAGTGAGGAAGCTGCTTCGAGAGCATACAAGTTTAATTTTGGAGACCACTGGAAAACAGGTGAAGATGGTAGGAGAGAACCGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAACACTAGATTTTGACGACCACTTTCAATTTTCCGGTGTGTGCAAGAATTGGAGGGCTTTCAATAAAATTTATTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCTTCAAATTTCAGGTCATCCTAAGGGATCATTTTCCTTTTTTAGCATACCCGACCAAAAAGTTTATTGCTCGAAGATGGGGAAGTACTTCTTCTACTCTGCCTATATTACGATTTCTAGCGGATATTTTATCATGGGGGGTTACAATAATAATTCATTTATGCTAATGAATCCATTCACAAGAATTAAAAAGGTAGTCAATACTCCTACTTCGAAAGTTATCCGTTCTTATTTAACTAAACGCGCCTTGCTTGCTTTTGACAAATGCTCCGAGGAATTTGTCTTGGTCGTTTTATGCAAAGATCATTTGCATGTCTATCAATCTCGAAATTTAGGTTGGGTTGCTTATTCGAGAATGGAAGATCCAGAGAGAATTGTTGACTTTGTGGTTTTGCAAAATATAATATATGTTGTCACTGACAAGGCCAACATAGGGGTAGTCAGCTTGAATTCAGCAAGTATTAAATTTCTAAAATTGAAGAATACTCCCAAAAGATTTTGCTTTTACACAAGGTTGGTTAATTGTGATGGGCAACTTTTAGTGGTTGATGTAACGTCCAAGAAAATAAGTAATGTCTACAAAATAGATTTCTCAACCATGAATTATGTCAAACCGGAAACTTTGGGCGACATTGCATTATTTTATGTATCATACGGAAGTTGTTATGCATTGAGCAACCCCAACAGGTGGGGATATGAAAGTAACTCTGTCTATATCATCAATTCTCTATCTACAAGCTGTAGTGTGTATTCGGTTGGTGATAATAAATTGCAAAAGTACATTACACTTTCAACTCCTCATGGAACAAGTTCCTTGTCTGACTGGTGTTTTAGACATCACCAATTTGAGGTAGATTATTCTCTAGTTGAGTAA

Protein sequence

>Msa0041550

MPRTPKPSAMLKILQNNNDSLAYLIKAVKDEFQYNNTEKYNEFLKLIKDYQVGITRISPKRHGQLINILKAKVRKLLREHTSLILETTGKQVKMVGENRELPWDVLDIISKTLDFDDHFQFSGVCKNWRAFNKIYWRNFLASQEPLLLQISGHPKGSFSFFSIPDQKVYCSKMGKYFFYSAYITISSGYFIMGGYNNNSFMLMNPFTRIKKVVNTPTSKVIRSYLTKRALLAFDKCSEEFVLVVLCKDHLHVYQSRNLGWVAYSRMEDPERIVDFVVLQNIIYVVTDKANIGVVSLNSASIKFLKLKNTPKRFCFYTRLVNCDGQLLVVDVTSKKISNVYKIDFSTMNYVKPETLGDIALFYVSYGSCYALSNPNRWGYESNSVYIINSLSTSCSVYSVGDNKLQKYITLSTPHGTSSLSDWCFRHHQFEVDYSLVE*