AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041550 MtrunA17_Chr7g0252101 60.586 444 147 9 10 437 1 432 5.19e-169 481
Msa0041550 MtrunA17_Chr1g0207351 70.286 350 95 4 97 437 17 366 1.03e-164 468
Msa0041550 MtrunA17_Chr3g0093911 68.946 351 103 4 92 437 1 350 2.45e-161 458
Msa0041550 MtrunA17_Chr4g0075971 56.613 431 147 8 34 437 185 602 4.57e-140 414
Msa0041550 MtrunA17_Chr3g0077801 59.942 347 131 4 95 434 4 349 1.80e-134 390
Msa0041550 MtrunA17_Chr3g0077901 57.542 358 140 7 88 436 17 371 6.08e-130 379
Msa0041550 MtrunA17_Chr6g0488101 48.124 453 187 11 24 437 12 455 3.37e-123 365
Msa0041550 MtrunA17_Chr3g0077851 58.580 338 128 7 108 436 1 335 9.19e-123 360
Msa0041550 MtrunA17_Chr6g0488271 50.369 407 159 8 69 437 14 415 1.33e-120 357
Msa0041550 MtrunA17_Chr3g0112311 54.318 359 145 5 92 435 1 355 4.88e-117 346
Msa0041550 MtrunA17_Chr7g0243331 54.830 352 147 7 94 437 3 350 1.52e-114 339
Msa0041550 MtrunA17_Chr1g0209051 65.683 271 85 5 173 436 1 270 3.37e-113 333
Msa0041550 MtrunA17_Chr6g0452641 52.923 325 125 10 134 437 23 340 3.73e-85 264
Msa0041550 MtrunA17_Chr3g0122991 47.040 321 110 6 95 404 3 274 2.37e-80 249
Msa0041550 MtrunA17_Chr1g0202841 64.804 179 56 3 266 437 1 179 1.27e-69 218
Msa0041550 MtrunA17_Chr1g0206951 83.333 114 19 0 94 207 1 114 2.48e-65 205
Msa0041550 MtrunA17_Chr3g0123471 49.057 265 120 7 173 429 2 259 8.23e-64 206
Msa0041550 MtrunA17_Chr7g0243391 50.704 213 100 3 88 298 14 223 3.57e-55 183
Msa0041550 MtrunA17_Chr1g0196231 60.811 148 52 4 89 235 224 366 5.72e-49 171
Msa0041550 MtrunA17_Chr4g0075861 53.769 199 61 4 35 213 186 373 1.01e-46 165
Msa0041550 MtrunA17_Chr1g0187941 62.044 137 48 2 266 398 1 137 2.85e-46 156
Msa0041550 MtrunA17_Chr6g0486591 50.314 159 65 3 293 437 1 159 7.96e-42 145
Msa0041550 MtrunA17_Chr1g0209191 66.327 98 25 2 347 436 1 98 1.05e-33 122
Msa0041550 MtrunA17_Chr1g0196241 70.455 88 24 2 336 421 1 88 9.15e-31 113
Msa0041550 MtrunA17_Chr1g0209061 48.438 128 41 4 10 132 1 108 3.75e-28 107
Msa0041550 MtrunA17_Chr7g0238781 40.741 135 75 3 124 256 27 158 2.27e-22 93.2
Msa0041550 MtrunA17_Chr6g0459061 27.576 330 226 9 100 423 18 340 7.29e-22 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATACAAGTTTAATTT+TGG 0.156280 1_1:+71992189 Msa0041550:CDS
CCATTACTTCTTCAAATTTC+AGG 0.199687 1_1:+71996043 Msa0041550:CDS
GTCTATCAATCTCGAAATTT+AGG 0.218923 1_1:+71996364 Msa0041550:CDS
GGGCTTTCAATAAAATTTAT+TGG 0.227091 1_1:+71995996 Msa0041550:CDS
CCAATGAATCATTGTTGTTT+TGG 0.256173 1_1:-71991997 None:intergenic
GCAATGTCGCCCAAAGTTTC+CGG 0.261392 1_1:-71996664 None:intergenic
CATACCATTGCACTTGGTTT+TGG 0.267379 1_1:-71991684 None:intergenic
AATTTATTGGAGAAATTTCT+TGG 0.271876 1_1:+71996009 Msa0041550:CDS
TTTGAAGAAGTAATGGTTCT+TGG 0.275808 1_1:-71996036 None:intergenic
TGTGTAAAAGCAAAATCTTT+TGG 0.279980 1_1:-71996539 None:intergenic
TCCATTCACAAGAATTAAAA+AGG 0.284001 1_1:+71996222 Msa0041550:CDS
TTCATTGGCGTATCTTATTA+AGG 0.286455 1_1:+71992012 Msa0041550:CDS
CTTTCATATCCCCACCTGTT+GGG 0.320613 1_1:-71996730 None:intergenic
GAGAATAATCTACCTCAAAT+TGG 0.329762 1_1:-71996891 None:intergenic
CAATTCAAAGGTGTATAATA+AGG 0.345222 1_1:-71991174 None:intergenic
TTTCCGGTGTGTGCAAGAAT+TGG 0.367195 1_1:+71995972 Msa0041550:CDS
TTGTTTGGCAATAATTTGAT+TGG 0.368111 1_1:+71996971 Msa0041550:three_prime_UTR
TTCCGGTTTGACATAATTCA+TGG 0.370822 1_1:-71996647 None:intergenic
TAACTCGTATAAGTCCTAAA+AGG 0.381040 1_1:+71992116 Msa0041550:CDS
AAAAGTTTATTGCTCGAAGA+TGG 0.381429 1_1:+71996108 Msa0041550:CDS
TTGAAGAAGTAATGGTTCTT+GGG 0.388728 1_1:-71996035 None:intergenic
TTATACACCTTTGAATTGTA+CGG 0.390444 1_1:+71991179 Msa0041550:five_prime_UTR
GGCAATAATTTGATTGGAGC+TGG 0.394520 1_1:+71996977 Msa0041550:three_prime_UTR
GTCGTCAAAATCTAGTGTTT+TGG 0.396017 1_1:-71995939 None:intergenic
TTATGTCAAACCGGAAACTT+TGG 0.400193 1_1:+71996654 Msa0041550:CDS
AGAGAGAATTGTTGACTTTG+TGG 0.400864 1_1:+71996417 Msa0041550:CDS
ACCTTGTTACCTATGGTTTG+TGG 0.411420 1_1:+71996933 Msa0041550:three_prime_UTR
TACAAGCTGTAGTGTGTATT+CGG 0.414398 1_1:+71996783 Msa0041550:CDS
TTTGTACACCTTGTTACCTA+TGG 0.423512 1_1:+71996926 Msa0041550:three_prime_UTR
GAGAGAACCGTGAACTTCCT+TGG 0.426190 1_1:+71995897 Msa0041550:CDS
TTTGTGATACACAGGAAAAC+AGG 0.427397 1_1:+71995862 Msa0041550:intron
TCCGCTAGAAATCGTAATAT+AGG 0.433848 1_1:-71996152 None:intergenic
AAATTAGTACCTTGAAGCTT+CGG 0.439148 1_1:-71991315 None:intergenic
CCAAAACAACAATGATTCAT+TGG 0.441594 1_1:+71991997 Msa0041550:CDS
ATCAATCTCGAAATTTAGGT+TGG 0.443569 1_1:+71996368 Msa0041550:CDS
CCTGAAATTTGAAGAAGTAA+TGG 0.445162 1_1:-71996043 None:intergenic
TAGATCGAACCGAAGCTTCA+AGG 0.445507 1_1:+71991306 Msa0041550:five_prime_UTR
AACACAAGCTTCCCTTCCCT+TGG 0.448630 1_1:+71991624 Msa0041550:five_prime_UTR
ATGCATTGAGCAACCCCAAC+AGG 0.449427 1_1:+71996716 Msa0041550:CDS
TATGTCAAACCGGAAACTTT+GGG 0.451094 1_1:+71996655 Msa0041550:CDS
CCGGTGTGTGCAAGAATTGG+AGG 0.453992 1_1:+71995975 Msa0041550:CDS
AACCATGAATTATGTCAAAC+CGG 0.456971 1_1:+71996645 Msa0041550:CDS
TCAAATTTCAGGTCATCCTA+AGG 0.457137 1_1:+71996054 Msa0041550:CDS
CTTTGAGTATGTTTATAAGC+TGG 0.460875 1_1:-71992144 None:intergenic
ACAAAGTCAACAATTCTCTC+TGG 0.465775 1_1:-71996415 None:intergenic
AAAGTTTATTGCTCGAAGAT+GGG 0.471695 1_1:+71996109 Msa0041550:CDS
CTCATTAAGGATTACCAGGT+TGG 0.474364 1_1:+71992091 Msa0041550:CDS
TTGGGTTGCTTATTCGAGAA+TGG 0.476603 1_1:+71996387 Msa0041550:CDS
ACAAGGTTGGTTAATTGTGA+TGG 0.480328 1_1:+71996559 Msa0041550:CDS
GATTTGAGAGGAAATTCAAT+TGG 0.485121 1_1:+71991207 Msa0041550:five_prime_UTR
TCAATCTCGAAATTTAGGTT+GGG 0.485728 1_1:+71996369 Msa0041550:CDS
AAAAGGAACGTGAAAACGCC+AGG 0.485831 1_1:-71991584 None:intergenic
AGAGAACCGTGAACTTCCTT+GGG 0.488088 1_1:+71995898 Msa0041550:CDS
TTGAGAGGAAATTCAATTGG+TGG 0.499094 1_1:+71991210 Msa0041550:five_prime_UTR
GAACAAGTTCCTTGTCTGAC+TGG 0.500255 1_1:+71996854 Msa0041550:CDS
ATTACACTTTCAACTCCTCA+TGG 0.500555 1_1:+71996832 Msa0041550:CDS
TTTCATATCCCCACCTGTTG+GGG 0.502299 1_1:-71996729 None:intergenic
CGCGTTTAGTTAAATAAGAA+CGG 0.509121 1_1:-71996273 None:intergenic
GAACGGATAACTTTCGAAGT+AGG 0.517882 1_1:-71996256 None:intergenic
CACAGGAAAACAGGTGAAGA+TGG 0.518228 1_1:+71995871 Msa0041550:intron
TATACACCTTTGAATTGTAC+GGG 0.520164 1_1:+71991180 Msa0041550:five_prime_UTR
CGGTGTGTGCAAGAATTGGA+GGG 0.522468 1_1:+71995976 Msa0041550:CDS
ATGCTCCGAGGAATTTGTCT+TGG 0.524362 1_1:+71996315 Msa0041550:CDS
CAAGGTTGGTTAATTGTGAT+GGG 0.530019 1_1:+71996560 Msa0041550:CDS
TCACTGACAAGGCCAACATA+GGG 0.530818 1_1:+71996464 Msa0041550:CDS
AAAACTCATTAAGGATTACC+AGG 0.544235 1_1:+71992087 Msa0041550:CDS
ACTTTCATATCCCCACCTGT+TGG 0.544382 1_1:-71996731 None:intergenic
GCATTTGTCAAAAGCAAGCA+AGG 0.553939 1_1:-71996296 None:intergenic
GTCACTGACAAGGCCAACAT+AGG 0.554026 1_1:+71996463 Msa0041550:CDS
GAGAAGCATACCATTGCACT+TGG 0.554349 1_1:-71991690 None:intergenic
CAAATTTCAGGTCATCCTAA+GGG 0.559725 1_1:+71996055 Msa0041550:CDS
GCACATCCCAAGGAAGTTCA+CGG 0.565593 1_1:-71995904 None:intergenic
CAAGCTGACTACCCCTATGT+TGG 0.572006 1_1:-71996476 None:intergenic
AAGTTTATTGCTCGAAGATG+GGG 0.576744 1_1:+71996110 Msa0041550:CDS
GGAAAACAGGTGAAGATGGT+AGG 0.589156 1_1:+71995875 Msa0041550:intron
TCCTCGGCATGGATTAAGAG+TGG 0.589825 1_1:-71991659 None:intergenic
AACGACCAAGACAAATTCCT+CGG 0.591881 1_1:-71996320 None:intergenic
AGTGGGAAGCTACTGATCCA+AGG 0.592831 1_1:-71991641 None:intergenic
CATTGAGCAACCCCAACAGG+TGG 0.595743 1_1:+71996719 Msa0041550:CDS
CGTATAAGTCCTAAAAGGCA+TGG 0.599982 1_1:+71992121 Msa0041550:CDS
TCGCTTCCCGTACAATTCAA+AGG 0.601939 1_1:-71991186 None:intergenic
GCCTATATTACGATTTCTAG+CGG 0.602302 1_1:+71996151 Msa0041550:CDS
AGCTGTAGTGTGTATTCGGT+TGG 0.603248 1_1:+71996787 Msa0041550:CDS
ATGATATCAAGCACATCCCA+AGG 0.608076 1_1:-71995914 None:intergenic
GTGGGAAGCTACTGATCCAA+GGG 0.611552 1_1:-71991640 None:intergenic
TGTACGGGAAGCGATTTGAG+AGG 0.613263 1_1:+71991195 Msa0041550:five_prime_UTR
GAAGCTACTGATCCAAGGGA+AGG 0.616164 1_1:-71991636 None:intergenic
AAGCTACTGATCCAAGGGAA+GGG 0.617092 1_1:-71991635 None:intergenic
ATAGGTAGACCACAAACCAT+AGG 0.619003 1_1:-71996942 None:intergenic
GACGCCAAAACCAAGTGCAA+TGG 0.620340 1_1:+71991680 Msa0041550:CDS
ACCACAAACCATAGGTAACA+AGG 0.625758 1_1:-71996934 None:intergenic
CCTCGGCATGGATTAAGAGT+GGG 0.625867 1_1:-71991658 None:intergenic
ACACACCGGAAAATTGAAAG+TGG 0.632736 1_1:-71995961 None:intergenic
ATTGAGCAACCCCAACAGGT+GGG 0.636644 1_1:+71996720 Msa0041550:CDS
AAAGGAACGTGAAAACGCCA+GGG 0.643111 1_1:-71991583 None:intergenic
CCTCCAATTCTTGCACACAC+CGG 0.647374 1_1:-71995975 None:intergenic
TCTAAAACACCAGTCAGACA+AGG 0.650346 1_1:-71996863 None:intergenic
ACATACTCAAAGCAAAAGTG+AGG 0.653804 1_1:+71992155 Msa0041550:CDS
CACTGACAAGGCCAACATAG+GGG 0.657764 1_1:+71996465 Msa0041550:CDS
TTGAGCAACCCCAACAGGTG+GGG 0.661540 1_1:+71996721 Msa0041550:CDS
AATATATGTTGTCACTGACA+AGG 0.670333 1_1:+71996453 Msa0041550:CDS
GACAAGGAACTTGTTCCATG+AGG 0.673028 1_1:-71996847 None:intergenic
CCCACTCTTAATCCATGCCG+AGG 0.676865 1_1:+71991658 Msa0041550:exon
TGGAGCTGGATAACATGTAG+TGG 0.679457 1_1:+71996991 Msa0041550:three_prime_UTR
TTATACGAGTTATTCCAACC+TGG 0.694950 1_1:-71992105 None:intergenic
ATTAAACAGAGGGTTAACCC+TGG 0.698891 1_1:+71991566 Msa0041550:intron
TGAATTTCAATATAATAACA+CGG 0.702179 1_1:+71992045 Msa0041550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTTGTTTTTAAAAA+AGG - chr1_1:71991604-71991623 None:intergenic 10.0%
!! AAAAAAAATTATTAGATTGA+AGG - chr1_1:71991721-71991740 None:intergenic 10.0%
!!! TCAATCTAATAATTTTTTTT+AGG + chr1_1:71991721-71991740 Msa0041550:intron 10.0%
!! AAATAAAAAGAAAATCTAAA+AGG + chr1_1:71993100-71993119 Msa0041550:intron 10.0%
!!! TTGAAATTTTTATAAATTGA+TGG - chr1_1:71993348-71993367 None:intergenic 10.0%
!!! TAATTTGATTATTTGTTAAT+TGG + chr1_1:71993875-71993894 Msa0041550:intron 10.0%
!!! AATTTGATTATTTGTTAATT+GGG + chr1_1:71993876-71993895 Msa0041550:intron 10.0%
!! AAAAATACTAATAAAATTCA+AGG - chr1_1:71993973-71993992 None:intergenic 10.0%
!!! AAACATAAGATATTTATTTT+TGG - chr1_1:71995796-71995815 None:intergenic 10.0%
!!! TTTTTATATCATTGATTTCT+GGG + chr1_1:71991279-71991298 Msa0041550:five_prime_UTR 15.0%
!! TGAATTTCAATATAATAACA+CGG + chr1_1:71992045-71992064 Msa0041550:CDS 15.0%
!!! TAAGTTTCCAAAATATTTTT+TGG - chr1_1:71992556-71992575 None:intergenic 15.0%
!!! TATTTGTTTTTTAGGTTTAA+TGG - chr1_1:71992678-71992697 None:intergenic 15.0%
!! AATCTAAAAGGAATATATTA+AGG + chr1_1:71993112-71993131 Msa0041550:intron 15.0%
!! ATCTAAAAGGAATATATTAA+GGG + chr1_1:71993113-71993132 Msa0041550:intron 15.0%
!!! TTTGAAATTTTAATACATTG+AGG + chr1_1:71994284-71994303 Msa0041550:intron 15.0%
!!! TTGAAATTTTAATACATTGA+GGG + chr1_1:71994285-71994304 Msa0041550:intron 15.0%
!! TCAAAAAAAAAAAAACTTTC+TGG + chr1_1:71995567-71995586 Msa0041550:intron 15.0%
!!! TTTTTTTAGGGAAATAGATT+TGG + chr1_1:71991149-71991168 Msa0041550:five_prime_UTR 20.0%
!!! CTTTTTATATCATTGATTTC+TGG + chr1_1:71991278-71991297 Msa0041550:five_prime_UTR 20.0%
!! ATTACTCTTAAATTAAACAG+AGG + chr1_1:71991555-71991574 Msa0041550:intron 20.0%
!! TTACTCTTAAATTAAACAGA+GGG + chr1_1:71991556-71991575 Msa0041550:intron 20.0%
!! AAAAATTATTAGATTGAAGG+AGG - chr1_1:71991718-71991737 None:intergenic 20.0%
!!! TGAGTTTTTAAAACTCATTA+AGG + chr1_1:71992078-71992097 Msa0041550:CDS 20.0%
!!! CTTACAACCAAAAAATATTT+TGG + chr1_1:71992546-71992565 Msa0041550:intron 20.0%
!! AACTAAAAGAAATTGTCATA+CGG + chr1_1:71992593-71992612 Msa0041550:intron 20.0%
!!! TTTTTAGGTTTAATGGATAT+GGG - chr1_1:71992671-71992690 None:intergenic 20.0%
!!! TTTTTTAGGTTTAATGGATA+TGG - chr1_1:71992672-71992691 None:intergenic 20.0%
!!! ATAATAAGGAAGTATATTGA+AGG - chr1_1:71993449-71993468 None:intergenic 20.0%
!! TACAAAAATGACCATTAAAA+CGG - chr1_1:71993672-71993691 None:intergenic 20.0%
!!! TGTGACTTTTATTTCAAATT+AGG + chr1_1:71994024-71994043 Msa0041550:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG + chr1_1:71994056-71994075 Msa0041550:intron 20.0%
!! TTATGATTTATCTCTGTATT+TGG + chr1_1:71994402-71994421 Msa0041550:intron 20.0%
!! AATTAAGAAAAACAATAGAG+TGG - chr1_1:71994810-71994829 None:intergenic 20.0%
!!! ATGATTTTGATGATGAAATT+AGG + chr1_1:71995232-71995251 Msa0041550:intron 20.0%
!!! TGTTTTTGGATTTTTTTTTC+TGG + chr1_1:71995302-71995321 Msa0041550:intron 20.0%
!!! AGTTATAAATGTTTTGCTTA+TGG - chr1_1:71995689-71995708 None:intergenic 20.0%
!! AAAACATTTATAACTTACAG+AGG + chr1_1:71995694-71995713 Msa0041550:intron 20.0%
!! AATTTATTGGAGAAATTTCT+TGG + chr1_1:71996009-71996028 Msa0041550:CDS 20.0%
!!! GCATTATTTTATGTATCATA+CGG + chr1_1:71996685-71996704 Msa0041550:CDS 20.0%
!! CAATTCAAAGGTGTATAATA+AGG - chr1_1:71991177-71991196 None:intergenic 25.0%
! TTATACACCTTTGAATTGTA+CGG + chr1_1:71991179-71991198 Msa0041550:five_prime_UTR 25.0%
!! ATAAAAAAAGCGTGAATGAA+GGG - chr1_1:71991375-71991394 None:intergenic 25.0%
!! AATAAAAAAAGCGTGAATGA+AGG - chr1_1:71991376-71991395 None:intergenic 25.0%
! AATAGGGGTCATTTAAAAAT+TGG + chr1_1:71991768-71991787 Msa0041550:intron 25.0%
!!! AGAGCATACAAGTTTAATTT+TGG + chr1_1:71992189-71992208 Msa0041550:CDS 25.0%
! ACAAACTAAAAATGGCATTA+CGG - chr1_1:71992314-71992333 None:intergenic 25.0%
! TTGAAGAAGAACTAAATTGA+TGG + chr1_1:71992406-71992425 Msa0041550:intron 25.0%
!! TTTTTCATGTAATGAACTGA+TGG + chr1_1:71992435-71992454 Msa0041550:intron 25.0%
!!! TGTCTTTAGAATATCATAAC+AGG + chr1_1:71992464-71992483 Msa0041550:intron 25.0%
!!! GTCTTTAGAATATCATAACA+GGG + chr1_1:71992465-71992484 Msa0041550:intron 25.0%
!!! TCTTTAGAATATCATAACAG+GGG + chr1_1:71992466-71992485 Msa0041550:intron 25.0%
! AACCTAAAAAACAAATACCA+TGG + chr1_1:71992681-71992700 Msa0041550:intron 25.0%
!!! TTCCATGGTATTTGTTTTTT+AGG - chr1_1:71992686-71992705 None:intergenic 25.0%
! ATAAAGAATCCTAACAGAAT+GGG - chr1_1:71992787-71992806 None:intergenic 25.0%
! AATAAAGAATCCTAACAGAA+TGG - chr1_1:71992788-71992807 None:intergenic 25.0%
! TAAAAAACAAAAGCTCCAAA+GGG - chr1_1:71992940-71992959 None:intergenic 25.0%
!! AATCATCTAGAACTAAAATG+TGG + chr1_1:71993019-71993038 Msa0041550:intron 25.0%
!! TGGAGTCAATGATTTTAAAT+TGG + chr1_1:71993039-71993058 Msa0041550:intron 25.0%
!! GGAGTCAATGATTTTAAATT+GGG + chr1_1:71993040-71993059 Msa0041550:intron 25.0%
!! GAGTCAATGATTTTAAATTG+GGG + chr1_1:71993041-71993060 Msa0041550:intron 25.0%
!! AGTCAATGATTTTAAATTGG+GGG + chr1_1:71993042-71993061 Msa0041550:intron 25.0%
! AAATTCACGAAACTAATGTT+TGG - chr1_1:71993070-71993089 None:intergenic 25.0%
!!! TCGACTTTATTTTGAAACTA+CGG + chr1_1:71993180-71993199 Msa0041550:intron 25.0%
!! TTTTACGTAACCATTAGAAA+GGG + chr1_1:71993220-71993239 Msa0041550:intron 25.0%
! ATTACATTACCATAATTGCT+CGG - chr1_1:71993262-71993281 None:intergenic 25.0%
!! AGCAATTATGGTAATGTAAT+TGG + chr1_1:71993262-71993281 Msa0041550:intron 25.0%
!! GCAATTATGGTAATGTAATT+GGG + chr1_1:71993263-71993282 Msa0041550:intron 25.0%
!!! AGTGAAACATTTTAACATCA+AGG - chr1_1:71993409-71993428 None:intergenic 25.0%
!!! TAAGTACTGATACGATAATA+AGG - chr1_1:71993463-71993482 None:intergenic 25.0%
!! TTCACTTAAAACCGTTTTAA+TGG + chr1_1:71993658-71993677 Msa0041550:intron 25.0%
!! TTGATTATTTGTTAATTGGG+AGG + chr1_1:71993879-71993898 Msa0041550:intron 25.0%
!!! ACTATTATCCCATTTTTGTT+TGG + chr1_1:71994355-71994374 Msa0041550:intron 25.0%
! TCAATAGTCCAAACAAAAAT+GGG - chr1_1:71994366-71994385 None:intergenic 25.0%
! ATCAATAGTCCAAACAAAAA+TGG - chr1_1:71994367-71994386 None:intergenic 25.0%
!! TCTGTCTTTGATAACATAAA+TGG + chr1_1:71994752-71994771 Msa0041550:intron 25.0%
!!! TTTTTTCTCACATGATTGTA+GGG + chr1_1:71994903-71994922 Msa0041550:intron 25.0%
!!! TTTGTTGTCTTCTCATTTTT+TGG - chr1_1:71995126-71995145 None:intergenic 25.0%
!!! AAATTAGGTGTTTTTGTTGA+TGG + chr1_1:71995247-71995266 Msa0041550:intron 25.0%
!! TTTATGAATGTTGATGAAGA+TGG + chr1_1:71995328-71995347 Msa0041550:intron 25.0%
!! ATTATGAATGTTGATGAAGA+TGG + chr1_1:71995375-71995394 Msa0041550:intron 25.0%
! CAAAAAACAAAATTCGTAGA+GGG - chr1_1:71995513-71995532 None:intergenic 25.0%
!!! TTTTTGAAGAAATCAAAGCT+AGG - chr1_1:71995554-71995573 None:intergenic 25.0%
! CGTCTTATCTATTACAAAAA+CGG - chr1_1:71995659-71995678 None:intergenic 25.0%
!! CGTTTTTGTAATAGATAAGA+CGG + chr1_1:71995657-71995676 Msa0041550:intron 25.0%
! TTAGAACAAAAAAGATACAG+AGG + chr1_1:71995722-71995741 Msa0041550:intron 25.0%
! CAGAAGTAAATAAAAGATCA+TGG + chr1_1:71995816-71995835 Msa0041550:intron 25.0%
! GGGCTTTCAATAAAATTTAT+TGG + chr1_1:71995996-71996015 Msa0041550:CDS 25.0%
! TCCATTCACAAGAATTAAAA+AGG + chr1_1:71996222-71996241 Msa0041550:CDS 25.0%
!!! ACCTTTTTAATTCTTGTGAA+TGG - chr1_1:71996226-71996245 None:intergenic 25.0%
!! GTGTAAAAGCAAAATCTTTT+GGG - chr1_1:71996541-71996560 None:intergenic 25.0%
!! TGTGTAAAAGCAAAATCTTT+TGG - chr1_1:71996542-71996561 None:intergenic 25.0%
!!! AAAGATTTTGCTTTTACACA+AGG + chr1_1:71996542-71996561 Msa0041550:CDS 25.0%
!!! GTAGACATTACTTATTTTCT+TGG - chr1_1:71996611-71996630 None:intergenic 25.0%
!!! TCTACCTATTTCTTTTTGTT+TGG + chr1_1:71996956-71996975 Msa0041550:three_prime_UTR 25.0%
! ATTGCCAAACAAAAAGAAAT+AGG - chr1_1:71996963-71996982 None:intergenic 25.0%
! TTGTTTGGCAATAATTTGAT+TGG + chr1_1:71996971-71996990 Msa0041550:three_prime_UTR 25.0%
TATACACCTTTGAATTGTAC+GGG + chr1_1:71991180-71991199 Msa0041550:five_prime_UTR 30.0%
GATTTGAGAGGAAATTCAAT+TGG + chr1_1:71991207-71991226 Msa0041550:five_prime_UTR 30.0%
TAAAAAGAGTAGATCGAGTA+GGG - chr1_1:71991265-71991284 None:intergenic 30.0%
ATAAAAAGAGTAGATCGAGT+AGG - chr1_1:71991266-71991285 None:intergenic 30.0%
AAATTAGTACCTTGAAGCTT+CGG - chr1_1:71991318-71991337 None:intergenic 30.0%
!!! TTCACGCTTTTTTTATTCAC+AGG + chr1_1:71991379-71991398 Msa0041550:intron 30.0%
AAATTGAAGGAGAGAAATTC+CGG - chr1_1:71991448-71991467 None:intergenic 30.0%
! AGTTTGAGATTCGAAATTGA+AGG - chr1_1:71991461-71991480 None:intergenic 30.0%
! CATTTTACCCTGCTAAATTT+TGG - chr1_1:71991823-71991842 None:intergenic 30.0%
!!! GACCAATTTTTTAAATGACC+CGG + chr1_1:71991862-71991881 Msa0041550:intron 30.0%
!!! ACCAATTTTTTAAATGACCC+GGG + chr1_1:71991863-71991882 Msa0041550:intron 30.0%
! TTTTATATGTGTTTAGTCCC+GGG - chr1_1:71991883-71991902 None:intergenic 30.0%
! CTTTTATATGTGTTTAGTCC+CGG - chr1_1:71991884-71991903 None:intergenic 30.0%
!!! ATGAATCATTGTTGTTTTGG+AGG - chr1_1:71991997-71992016 None:intergenic 30.0%
!!! CCAATGAATCATTGTTGTTT+TGG - chr1_1:71992000-71992019 None:intergenic 30.0%
CCAAAACAACAATGATTCAT+TGG + chr1_1:71991997-71992016 Msa0041550:CDS 30.0%
TTCATTGGCGTATCTTATTA+AGG + chr1_1:71992012-71992031 Msa0041550:CDS 30.0%
AAAACTCATTAAGGATTACC+AGG + chr1_1:71992087-71992106 Msa0041550:CDS 30.0%
TAACTCGTATAAGTCCTAAA+AGG + chr1_1:71992116-71992135 Msa0041550:CDS 30.0%
CTTTGAGTATGTTTATAAGC+TGG - chr1_1:71992147-71992166 None:intergenic 30.0%
AATGATAGATTACTAACCAG+TGG - chr1_1:71992218-71992237 None:intergenic 30.0%
! TGATGGTGACAAACTAAAAA+TGG - chr1_1:71992322-71992341 None:intergenic 30.0%
GTATTCTACACATAGAACTA+TGG - chr1_1:71992346-71992365 None:intergenic 30.0%
AGTTCTATGTGTAGAATACA+AGG + chr1_1:71992347-71992366 Msa0041550:intron 30.0%
ATTATGAGCTGAATACAATG+AGG - chr1_1:71992641-71992660 None:intergenic 30.0%
AAACAAATACCATGGAATGA+TGG + chr1_1:71992689-71992708 Msa0041550:intron 30.0%
!! GTATGTTGAGTTGGAAAAAA+GGG - chr1_1:71992813-71992832 None:intergenic 30.0%
!! AGTATGTTGAGTTGGAAAAA+AGG - chr1_1:71992814-71992833 None:intergenic 30.0%
GTAAAAAACAAAAGCTCCAA+AGG - chr1_1:71992941-71992960 None:intergenic 30.0%
ATTGATAAAGTTAACCTGAG+TGG - chr1_1:71992963-71992982 None:intergenic 30.0%
!! TTTAGTTCTAGATGATTGCA+CGG - chr1_1:71993016-71993035 None:intergenic 30.0%
TTTCAAAATAAAGTCGACCA+AGG - chr1_1:71993177-71993196 None:intergenic 30.0%
TTCTAATGGTTACGTAAAAC+AGG - chr1_1:71993219-71993238 None:intergenic 30.0%
! GTTTTACGTAACCATTAGAA+AGG + chr1_1:71993219-71993238 Msa0041550:intron 30.0%
TTACATTACCATAATTGCTC+GGG - chr1_1:71993261-71993280 None:intergenic 30.0%
TATTGACAACAGAGCATATA+AGG - chr1_1:71993509-71993528 None:intergenic 30.0%
ATGGAAAAGAGTAATAGTTC+AGG - chr1_1:71993705-71993724 None:intergenic 30.0%
!! CTTGTTACTTTAAGCTTTAG+AGG + chr1_1:71993931-71993950 Msa0041550:intron 30.0%
!! TTTTGTTTGGACTATTGATC+AGG + chr1_1:71994368-71994387 Msa0041550:intron 30.0%
ACTACCAAGTATTATCCTTA+TGG - chr1_1:71994428-71994447 None:intergenic 30.0%
!! ATGTCATGATTAGTTTGTGA+TGG + chr1_1:71994488-71994507 Msa0041550:intron 30.0%
AACAACTCTTGTATCTGTAT+TGG + chr1_1:71994585-71994604 Msa0041550:intron 30.0%
! TTGGTATAGTTCTACAACTT+TGG + chr1_1:71994604-71994623 Msa0041550:intron 30.0%
TAACTTCACTGTATTCATGA+GGG - chr1_1:71994725-71994744 None:intergenic 30.0%
TTAACTTCACTGTATTCATG+AGG - chr1_1:71994726-71994745 None:intergenic 30.0%
CAATAGAGTGGAATTATGAA+AGG - chr1_1:71994798-71994817 None:intergenic 30.0%
!!! GTTTTTTCTCACATGATTGT+AGG + chr1_1:71994902-71994921 Msa0041550:intron 30.0%
! TTTTTCTCACATGATTGTAG+GGG + chr1_1:71994904-71994923 Msa0041550:intron 30.0%
AATGAGAAGACAACAAATCT+AGG + chr1_1:71995129-71995148 Msa0041550:intron 30.0%
! GAAGAAGATGAAGAATTTTC+TGG - chr1_1:71995162-71995181 None:intergenic 30.0%
CAAGAAACTCTCTTTAATGA+AGG - chr1_1:71995184-71995203 None:intergenic 30.0%
! GGAAGAAGATATGAATTTTC+TGG + chr1_1:71995426-71995445 Msa0041550:intron 30.0%
! GAATTTTCTGGATTTTTCTC+TGG + chr1_1:71995438-71995457 Msa0041550:intron 30.0%
!!! TTTGCTGTCTTCTTGTTTTT+TGG + chr1_1:71995480-71995499 Msa0041550:intron 30.0%
!!! GTCTTCTTGTTTTTTGGTTT+TGG + chr1_1:71995486-71995505 Msa0041550:intron 30.0%
CCAAAAAACAAAATTCGTAG+AGG - chr1_1:71995514-71995533 None:intergenic 30.0%
!!! CCTCTACGAATTTTGTTTTT+TGG + chr1_1:71995511-71995530 Msa0041550:intron 30.0%
! TTTGTAAGTTCGCATGTTTT+TGG - chr1_1:71995754-71995773 None:intergenic 30.0%
GTATCACAAAATGACATGTT+AGG - chr1_1:71995852-71995871 None:intergenic 30.0%
TTGAAGAAGTAATGGTTCTT+GGG - chr1_1:71996038-71996057 None:intergenic 30.0%
TTTGAAGAAGTAATGGTTCT+TGG - chr1_1:71996039-71996058 None:intergenic 30.0%
CCTGAAATTTGAAGAAGTAA+TGG - chr1_1:71996046-71996065 None:intergenic 30.0%
CCATTACTTCTTCAAATTTC+AGG + chr1_1:71996043-71996062 Msa0041550:CDS 30.0%
AAAAAGGAAAATGATCCCTT+AGG - chr1_1:71996073-71996092 None:intergenic 30.0%
! TCTTCGAGCAATAAACTTTT+TGG - chr1_1:71996108-71996127 None:intergenic 30.0%
AAAAGTTTATTGCTCGAAGA+TGG + chr1_1:71996108-71996127 Msa0041550:CDS 30.0%
AAAGTTTATTGCTCGAAGAT+GGG + chr1_1:71996109-71996128 Msa0041550:CDS 30.0%
!! TTCTAGCGGATATTTTATCA+TGG + chr1_1:71996165-71996184 Msa0041550:CDS 30.0%
!! TCTAGCGGATATTTTATCAT+GGG + chr1_1:71996166-71996185 Msa0041550:CDS 30.0%
CGCGTTTAGTTAAATAAGAA+CGG - chr1_1:71996276-71996295 None:intergenic 30.0%
GTCTATCAATCTCGAAATTT+AGG + chr1_1:71996364-71996383 Msa0041550:CDS 30.0%
ATCAATCTCGAAATTTAGGT+TGG + chr1_1:71996368-71996387 Msa0041550:CDS 30.0%
! TCAATCTCGAAATTTAGGTT+GGG + chr1_1:71996369-71996388 Msa0041550:CDS 30.0%
AATATATGTTGTCACTGACA+AGG + chr1_1:71996453-71996472 Msa0041550:CDS 30.0%
!! ATTTTGCTTTTACACAAGGT+TGG + chr1_1:71996546-71996565 Msa0041550:CDS 30.0%
AACCATGAATTATGTCAAAC+CGG + chr1_1:71996645-71996664 Msa0041550:CDS 30.0%
! TTTTAGACATCACCAATTTG+AGG + chr1_1:71996879-71996898 Msa0041550:CDS 30.0%
GAGAATAATCTACCTCAAAT+TGG - chr1_1:71996894-71996913 None:intergenic 30.0%
TTGAGAGGAAATTCAATTGG+TGG + chr1_1:71991210-71991229 Msa0041550:five_prime_UTR 35.0%
AAAAAGAGTAGATCGAGTAG+GGG - chr1_1:71991264-71991283 None:intergenic 35.0%
!!! CGCTTTTTTTATTCACAGGT+AGG + chr1_1:71991383-71991402 Msa0041550:intron 35.0%
GTGTTTAGTCTCTGCAAATA+GGG + chr1_1:71991752-71991771 Msa0041550:intron 35.0%
TGTTTAGTCTCTGCAAATAG+GGG + chr1_1:71991753-71991772 Msa0041550:intron 35.0%
TCCCGGGTCATTTAAAAAAT+TGG - chr1_1:71991867-71991886 None:intergenic 35.0%
TTATACGAGTTATTCCAACC+TGG - chr1_1:71992108-71992127 None:intergenic 35.0%
ACATACTCAAAGCAAAAGTG+AGG + chr1_1:71992155-71992174 Msa0041550:CDS 35.0%
!! AGTTTAATTTTGGAGACCAC+TGG + chr1_1:71992199-71992218 Msa0041550:CDS 35.0%
ACACATAGAACTATGGTTGA+TGG - chr1_1:71992339-71992358 None:intergenic 35.0%
AGAATATCATAACAGGGGTT+AGG + chr1_1:71992471-71992490 Msa0041550:intron 35.0%
GTATTCAGCTCATAATCGTT+TGG + chr1_1:71992645-71992664 Msa0041550:intron 35.0%
! AATACCATGGAATGATGGAA+TGG + chr1_1:71992694-71992713 Msa0041550:intron 35.0%
GTATGGGGTGATAAAAGTTA+AGG - chr1_1:71992765-71992784 None:intergenic 35.0%
AATCCTAACAGAATGGGTAT+GGG - chr1_1:71992781-71992800 None:intergenic 35.0%
! AGATAATGGCATAAGAGGAT+GGG - chr1_1:71992847-71992866 None:intergenic 35.0%
! TAGATAATGGCATAAGAGGA+TGG - chr1_1:71992848-71992867 None:intergenic 35.0%
! GAGATAGATAATGGCATAAG+AGG - chr1_1:71992852-71992871 None:intergenic 35.0%
ATCCAAGAAAGAGATAGCAA+GGG - chr1_1:71992881-71992900 None:intergenic 35.0%
TATCCAAGAAAGAGATAGCA+AGG - chr1_1:71992882-71992901 None:intergenic 35.0%
!!! GCTTTTGTTTTTTACCACTC+AGG + chr1_1:71992946-71992965 Msa0041550:intron 35.0%
TTATCATCCACCCTTTCTAA+TGG - chr1_1:71993233-71993252 None:intergenic 35.0%
TAATTCTTCCCGAGCAATTA+TGG + chr1_1:71993250-71993269 Msa0041550:intron 35.0%
TACACTTCAAGAGAATGACA+AGG - chr1_1:71993307-71993326 None:intergenic 35.0%
ATATGCTCTGTTGTCAATAG+CGG + chr1_1:71993510-71993529 Msa0041550:intron 35.0%
TATAAGCTCTGTTGTCAAAG+CGG - chr1_1:71994181-71994200 None:intergenic 35.0%
TATCTCTGTATTTGGCCATA+AGG + chr1_1:71994410-71994429 Msa0041550:intron 35.0%
TTGGCCATAAGGATAATACT+TGG + chr1_1:71994421-71994440 Msa0041550:intron 35.0%
ACATAGAGTGGAATTCTGAA+GGG - chr1_1:71994697-71994716 None:intergenic 35.0%
AACATAGAGTGGAATTCTGA+AGG - chr1_1:71994698-71994717 None:intergenic 35.0%
AACTTCACTGTATTCATGAG+GGG - chr1_1:71994724-71994743 None:intergenic 35.0%
! TTTTCTCACATGATTGTAGG+GGG + chr1_1:71994905-71994924 Msa0041550:intron 35.0%
CTGTTACAAAAACGCATATG+TGG + chr1_1:71995022-71995041 Msa0041550:intron 35.0%
AAAAACGCATATGTGGCAAA+CGG + chr1_1:71995029-71995048 Msa0041550:intron 35.0%
!! ATGCTGACTCAAAAAGTTAG+AGG + chr1_1:71995098-71995117 Msa0041550:intron 35.0%
!! TGCTGACTCAAAAAGTTAGA+GGG + chr1_1:71995099-71995118 Msa0041550:intron 35.0%
!! TTAGGTGTTTTTGTTGATGG+TGG + chr1_1:71995250-71995269 Msa0041550:intron 35.0%
! TAGTGATTAGATGATGGTGA+TGG + chr1_1:71995275-71995294 Msa0041550:intron 35.0%
!!! ATGGTGATGGTTGTTGTTTT+TGG + chr1_1:71995288-71995307 Msa0041550:intron 35.0%
GATGATGAAGAAGAAAGAGA+AGG + chr1_1:71995405-71995424 Msa0041550:intron 35.0%
!! TTTTGGTCCCTTTAACTTTC+TGG + chr1_1:71995528-71995547 Msa0041550:intron 35.0%
! CTACGCAAACATTATTTTCC+CGG + chr1_1:71995605-71995624 Msa0041550:intron 35.0%
TTTGTAATAGATAAGACGGC+AGG + chr1_1:71995661-71995680 Msa0041550:intron 35.0%
TTGTAATAGATAAGACGGCA+GGG + chr1_1:71995662-71995681 Msa0041550:intron 35.0%
!!! CATGTCATTTTGTGATACAC+AGG + chr1_1:71995854-71995873 Msa0041550:intron 35.0%
TTTGTGATACACAGGAAAAC+AGG + chr1_1:71995862-71995881 Msa0041550:intron 35.0%
! GTCGTCAAAATCTAGTGTTT+TGG - chr1_1:71995942-71995961 None:intergenic 35.0%
! TCAAATTTCAGGTCATCCTA+AGG + chr1_1:71996054-71996073 Msa0041550:CDS 35.0%
! CAAATTTCAGGTCATCCTAA+GGG + chr1_1:71996055-71996074 Msa0041550:CDS 35.0%
!! GAGCAATAAACTTTTTGGTC+GGG - chr1_1:71996103-71996122 None:intergenic 35.0%
!! CGAGCAATAAACTTTTTGGT+CGG - chr1_1:71996104-71996123 None:intergenic 35.0%
AAGTTTATTGCTCGAAGATG+GGG + chr1_1:71996110-71996129 Msa0041550:CDS 35.0%
! GCCTATATTACGATTTCTAG+CGG + chr1_1:71996151-71996170 Msa0041550:CDS 35.0%
TCCGCTAGAAATCGTAATAT+AGG - chr1_1:71996155-71996174 None:intergenic 35.0%
!! CTAGCGGATATTTTATCATG+GGG + chr1_1:71996167-71996186 Msa0041550:CDS 35.0%
!! TAGCGGATATTTTATCATGG+GGG + chr1_1:71996168-71996187 Msa0041550:CDS 35.0%
ACAAAGTCAACAATTCTCTC+TGG - chr1_1:71996418-71996437 None:intergenic 35.0%
!! AGAGAGAATTGTTGACTTTG+TGG + chr1_1:71996417-71996436 Msa0041550:CDS 35.0%
! ACAAGGTTGGTTAATTGTGA+TGG + chr1_1:71996559-71996578 Msa0041550:CDS 35.0%
! CAAGGTTGGTTAATTGTGAT+GGG + chr1_1:71996560-71996579 Msa0041550:CDS 35.0%
! TTCCGGTTTGACATAATTCA+TGG - chr1_1:71996650-71996669 None:intergenic 35.0%
TTATGTCAAACCGGAAACTT+TGG + chr1_1:71996654-71996673 Msa0041550:CDS 35.0%
TATGTCAAACCGGAAACTTT+GGG + chr1_1:71996655-71996674 Msa0041550:CDS 35.0%
TACAAGCTGTAGTGTGTATT+CGG + chr1_1:71996783-71996802 Msa0041550:CDS 35.0%
ATTACACTTTCAACTCCTCA+TGG + chr1_1:71996832-71996851 Msa0041550:CDS 35.0%
TTTGTACACCTTGTTACCTA+TGG + chr1_1:71996926-71996945 Msa0041550:three_prime_UTR 35.0%
GAATGAGCGCTTATGAAAAG+GGG - chr1_1:71991426-71991445 None:intergenic 40.0%
GGAATGAGCGCTTATGAAAA+GGG - chr1_1:71991427-71991446 None:intergenic 40.0%
! CTTTTCATAAGCGCTCATTC+CGG + chr1_1:71991426-71991445 Msa0041550:intron 40.0%
ATTAAACAGAGGGTTAACCC+TGG + chr1_1:71991566-71991585 Msa0041550:intron 40.0%
! CATACCATTGCACTTGGTTT+TGG - chr1_1:71991687-71991706 None:intergenic 40.0%
CGTGTTTAGTCTCTGCAAAT+AGG + chr1_1:71991751-71991770 Msa0041550:intron 40.0%
!! TACCCTGCTAAATTTTGGCA+GGG - chr1_1:71991818-71991837 None:intergenic 40.0%
!! TTACCCTGCTAAATTTTGGC+AGG - chr1_1:71991819-71991838 None:intergenic 40.0%
ATTTAGCAGGGTAAAATGCC+AGG + chr1_1:71991825-71991844 Msa0041550:intron 40.0%
CTCATTAAGGATTACCAGGT+TGG + chr1_1:71992091-71992110 Msa0041550:CDS 40.0%
CGTATAAGTCCTAAAAGGCA+TGG + chr1_1:71992121-71992140 Msa0041550:CDS 40.0%
!! CAGAAAAGTATCAGCTGCAA+TGG - chr1_1:71992243-71992262 None:intergenic 40.0%
CTTCAGAAACTTATGTCCAC+CGG + chr1_1:71992513-71992532 Msa0041550:intron 40.0%
GGTTGTAAGACAGTTGTTAC+CGG - chr1_1:71992535-71992554 None:intergenic 40.0%
ATGAGCTGAATACAATGAGG+AGG - chr1_1:71992638-71992657 None:intergenic 40.0%
TTTGCCATTCCATCATTCCA+TGG - chr1_1:71992701-71992720 None:intergenic 40.0%
AAGTTAAGGAGAGAGTAGTG+AGG - chr1_1:71992751-71992770 None:intergenic 40.0%
ATCCTAACAGAATGGGTATG+GGG - chr1_1:71992780-71992799 None:intergenic 40.0%
GAATCCTAACAGAATGGGTA+TGG - chr1_1:71992782-71992801 None:intergenic 40.0%
! GGATGAGAAGTATGTTGAGT+TGG - chr1_1:71992822-71992841 None:intergenic 40.0%
GGGACACAAGAGATAGATAA+TGG - chr1_1:71992861-71992880 None:intergenic 40.0%
TCTTGGATAAACATGAGTCG+TGG + chr1_1:71992893-71992912 Msa0041550:intron 40.0%
AAAGCTCCAAAGGGCTATAT+TGG - chr1_1:71992931-71992950 None:intergenic 40.0%
ATTAAGGGTCAGATAGCCAT+AGG + chr1_1:71993128-71993147 Msa0041550:intron 40.0%
TACGTAACCATTAGAAAGGG+TGG + chr1_1:71993223-71993242 Msa0041550:intron 40.0%
!!! ATGTCGCGTTTTGCTGTTTT+TGG - chr1_1:71993557-71993576 None:intergenic 40.0%
!! CGTTGTGTATTTGGTTCTGA+TGG - chr1_1:71993724-71993743 None:intergenic 40.0%
GAGATGATGCGTTGTGTATT+TGG - chr1_1:71993733-71993752 None:intergenic 40.0%
AGAAATGAGGAGATGAGAAG+AGG - chr1_1:71993777-71993796 None:intergenic 40.0%
GTTTCTGCGATCAAGAAATG+AGG - chr1_1:71993790-71993809 None:intergenic 40.0%
TGAAGAGAGGAGAACAAAGA+TGG - chr1_1:71993812-71993831 None:intergenic 40.0%
TGAAGTCAAGAGATGAAGAG+AGG - chr1_1:71993825-71993844 None:intergenic 40.0%
!! GCTTTAGAGGCTTAAAGTGT+TGG + chr1_1:71993944-71993963 Msa0041550:intron 40.0%
!!! TGAGAGATTATTTTAGCGCC+AGG + chr1_1:71994223-71994242 Msa0041550:intron 40.0%
!!! GAGAGATTATTTTAGCGCCA+GGG + chr1_1:71994224-71994243 Msa0041550:intron 40.0%
CTGTAAGTCAAAATACTCCC+TGG - chr1_1:71994244-71994263 None:intergenic 40.0%
TCATTACACGTTACACGTTC+AGG + chr1_1:71994322-71994341 Msa0041550:intron 40.0%
CATTACACGTTACACGTTCA+GGG + chr1_1:71994323-71994342 Msa0041550:intron 40.0%
! TTGTGATGGAAAAGAACACG+AGG + chr1_1:71994502-71994521 Msa0041550:intron 40.0%
ATGATTGTAGGGGGAATTCA+TGG + chr1_1:71994914-71994933 Msa0041550:intron 40.0%
! TGTAACAGATGATGACGACA+GGG - chr1_1:71995010-71995029 None:intergenic 40.0%
! TTGTAACAGATGATGACGAC+AGG - chr1_1:71995011-71995030 None:intergenic 40.0%
!!! AACTTTTTGAGTCAGCATCG+AGG - chr1_1:71995096-71995115 None:intergenic 40.0%
GTGGTGTAGTGATTAGATGA+TGG + chr1_1:71995269-71995288 Msa0041550:intron 40.0%
AGCTAGGCCAGAAAGTTAAA+GGG - chr1_1:71995538-71995557 None:intergenic 40.0%
AAGCTAGGCCAGAAAGTTAA+AGG - chr1_1:71995539-71995558 None:intergenic 40.0%
AAAACGGATGTGTCAAACAG+AGG - chr1_1:71995643-71995662 None:intergenic 40.0%
ATGATATCAAGCACATCCCA+AGG - chr1_1:71995917-71995936 None:intergenic 40.0%
! GACGACCACTTTCAATTTTC+CGG + chr1_1:71995956-71995975 Msa0041550:CDS 40.0%
ACACACCGGAAAATTGAAAG+TGG - chr1_1:71995964-71995983 None:intergenic 40.0%
TTGGTCGGGTATGCTAAAAA+AGG - chr1_1:71996089-71996108 None:intergenic 40.0%
! AGCGGATATTTTATCATGGG+GGG + chr1_1:71996169-71996188 Msa0041550:CDS 40.0%
GAACGGATAACTTTCGAAGT+AGG - chr1_1:71996259-71996278 None:intergenic 40.0%
GCATTTGTCAAAAGCAAGCA+AGG - chr1_1:71996299-71996318 None:intergenic 40.0%
AACGACCAAGACAAATTCCT+CGG - chr1_1:71996323-71996342 None:intergenic 40.0%
! TTGGGTTGCTTATTCGAGAA+TGG + chr1_1:71996387-71996406 Msa0041550:CDS 40.0%
!!! TTGTGATGGGCAACTTTTAG+TGG + chr1_1:71996573-71996592 Msa0041550:CDS 40.0%
! TCTAAAACACCAGTCAGACA+AGG - chr1_1:71996866-71996885 None:intergenic 40.0%
ACCTTGTTACCTATGGTTTG+TGG + chr1_1:71996933-71996952 Msa0041550:three_prime_UTR 40.0%
ACCACAAACCATAGGTAACA+AGG - chr1_1:71996937-71996956 None:intergenic 40.0%
ATAGGTAGACCACAAACCAT+AGG - chr1_1:71996945-71996964 None:intergenic 40.0%
GGCAATAATTTGATTGGAGC+TGG + chr1_1:71996977-71996996 Msa0041550:three_prime_UTR 40.0%
TCGCTTCCCGTACAATTCAA+AGG - chr1_1:71991189-71991208 None:intergenic 45.0%
TAGATCGAACCGAAGCTTCA+AGG + chr1_1:71991306-71991325 Msa0041550:five_prime_UTR 45.0%
CGGAATGAGCGCTTATGAAA+AGG - chr1_1:71991428-71991447 None:intergenic 45.0%
AAAGGAACGTGAAAACGCCA+GGG - chr1_1:71991586-71991605 None:intergenic 45.0%
AAAAGGAACGTGAAAACGCC+AGG - chr1_1:71991587-71991606 None:intergenic 45.0%
AAGCTACTGATCCAAGGGAA+GGG - chr1_1:71991638-71991657 None:intergenic 45.0%
! GAGAAGCATACCATTGCACT+TGG - chr1_1:71991693-71991712 None:intergenic 45.0%
AGGGCAAAATGTCAGGATCA+AGG - chr1_1:71991799-71991818 None:intergenic 45.0%
! TTTTGGCAGGGCAAAATGTC+AGG - chr1_1:71991806-71991825 None:intergenic 45.0%
TTGCCCTGCCAAAATTTAGC+AGG + chr1_1:71991812-71991831 Msa0041550:intron 45.0%
TGCCCTGCCAAAATTTAGCA+GGG + chr1_1:71991813-71991832 Msa0041550:intron 45.0%
AGGGTAAAATGCCAGGACTA+AGG + chr1_1:71991832-71991851 Msa0041550:intron 45.0%
GGTCATGTATTCCTTAGTCC+TGG - chr1_1:71991846-71991865 None:intergenic 45.0%
! ATAAGCTGGCCATGCCTTTT+AGG - chr1_1:71992133-71992152 None:intergenic 45.0%
AAAAATGGCATTACGGCGTG+TGG - chr1_1:71992307-71992326 None:intergenic 45.0%
CGGTGGACATAAGTTTCTGA+AGG - chr1_1:71992515-71992534 None:intergenic 45.0%
TGTAAGACAGTTGTTACCGG+TGG - chr1_1:71992532-71992551 None:intergenic 45.0%
TAAGGAGAGAGTAGTGAGGT+GGG - chr1_1:71992747-71992766 None:intergenic 45.0%
TTAAGGAGAGAGTAGTGAGG+TGG - chr1_1:71992748-71992767 None:intergenic 45.0%
! GTCCCTTGCTATCTCTTTCT+TGG + chr1_1:71992876-71992895 Msa0041550:intron 45.0%
GGGCTATATTGGTGGAAGAT+AGG - chr1_1:71992920-71992939 None:intergenic 45.0%
CTTCCACCAATATAGCCCTT+TGG + chr1_1:71992922-71992941 Msa0041550:intron 45.0%
GACCAAGGATGAAAGATGTG+GGG - chr1_1:71993162-71993181 None:intergenic 45.0%
CGACCAAGGATGAAAGATGT+GGG - chr1_1:71993163-71993182 None:intergenic 45.0%
TCGACCAAGGATGAAAGATG+TGG - chr1_1:71993164-71993183 None:intergenic 45.0%
!! TAAGTGAAAAGCGCCTGCTT+TGG - chr1_1:71993646-71993665 None:intergenic 45.0%
GAGATGAGAAGAGGAGAGAT+GGG - chr1_1:71993768-71993787 None:intergenic 45.0%
CTGTTGTCAAAGCGGAAAGA+GGG - chr1_1:71994173-71994192 None:intergenic 45.0%
TCTGTTGTCAAAGCGGAAAG+AGG - chr1_1:71994174-71994193 None:intergenic 45.0%
ATGAGGGGAACAACATAGAG+TGG - chr1_1:71994709-71994728 None:intergenic 45.0%
CACAGGAAAACAGGTGAAGA+TGG + chr1_1:71995871-71995890 Msa0041550:intron 45.0%
GGAAAACAGGTGAAGATGGT+AGG + chr1_1:71995875-71995894 Msa0041550:intron 45.0%
AGAGAACCGTGAACTTCCTT+GGG + chr1_1:71995898-71995917 Msa0041550:CDS 45.0%
TTTCCGGTGTGTGCAAGAAT+TGG + chr1_1:71995972-71995991 Msa0041550:CDS 45.0%
! TGCTTTTGACAAATGCTCCG+AGG + chr1_1:71996303-71996322 Msa0041550:CDS 45.0%
ATGCTCCGAGGAATTTGTCT+TGG + chr1_1:71996315-71996334 Msa0041550:CDS 45.0%
TCACTGACAAGGCCAACATA+GGG + chr1_1:71996464-71996483 Msa0041550:CDS 45.0%
TTTCATATCCCCACCTGTTG+GGG - chr1_1:71996732-71996751 None:intergenic 45.0%
CTTTCATATCCCCACCTGTT+GGG - chr1_1:71996733-71996752 None:intergenic 45.0%
ACTTTCATATCCCCACCTGT+TGG - chr1_1:71996734-71996753 None:intergenic 45.0%
AGCTGTAGTGTGTATTCGGT+TGG + chr1_1:71996787-71996806 Msa0041550:CDS 45.0%
! GACAAGGAACTTGTTCCATG+AGG - chr1_1:71996850-71996869 None:intergenic 45.0%
GAACAAGTTCCTTGTCTGAC+TGG + chr1_1:71996854-71996873 Msa0041550:CDS 45.0%
TGGAGCTGGATAACATGTAG+TGG + chr1_1:71996991-71997010 Msa0041550:three_prime_UTR 45.0%
TGTACGGGAAGCGATTTGAG+AGG + chr1_1:71991195-71991214 Msa0041550:five_prime_UTR 50.0%
AACACAAGCTTCCCTTCCCT+TGG + chr1_1:71991624-71991643 Msa0041550:five_prime_UTR 50.0%
GAAGCTACTGATCCAAGGGA+AGG - chr1_1:71991639-71991658 None:intergenic 50.0%
GTGGGAAGCTACTGATCCAA+GGG - chr1_1:71991643-71991662 None:intergenic 50.0%
AGTGGGAAGCTACTGATCCA+AGG - chr1_1:71991644-71991663 None:intergenic 50.0%
! CCTCGGCATGGATTAAGAGT+GGG - chr1_1:71991661-71991680 None:intergenic 50.0%
! TCCTCGGCATGGATTAAGAG+TGG - chr1_1:71991662-71991681 None:intergenic 50.0%
GACGCCAAAACCAAGTGCAA+TGG + chr1_1:71991680-71991699 Msa0041550:CDS 50.0%
TACGGCGTGTGGTAGAAACA+TGG - chr1_1:71992296-71992315 None:intergenic 50.0%
AAGGAGAGAGTAGTGAGGTG+GGG - chr1_1:71992746-71992765 None:intergenic 50.0%
CACCCCATACCCATTCTGTT+AGG + chr1_1:71992775-71992794 Msa0041550:intron 50.0%
AATGGCATAAGAGGATGGGC+TGG - chr1_1:71992843-71992862 None:intergenic 50.0%
GCTCCAAAGGGCTATATTGG+TGG - chr1_1:71992928-71992947 None:intergenic 50.0%
AAGGGTCAGATAGCCATAGG+TGG + chr1_1:71993131-71993150 Msa0041550:intron 50.0%
TCAGATAGCCATAGGTGGCA+TGG + chr1_1:71993136-71993155 Msa0041550:intron 50.0%
TTTCTCGAAACACGCCACGT+TGG - chr1_1:71993586-71993605 None:intergenic 50.0%
GGTATAAAGCAGGCCAAAGC+AGG + chr1_1:71993630-71993649 Msa0041550:intron 50.0%
GGAGATGAGAAGAGGAGAGA+TGG - chr1_1:71993769-71993788 None:intergenic 50.0%
AACGCATATGTGGCAAACGG+CGG + chr1_1:71995032-71995051 Msa0041550:intron 50.0%
! AACTTTCTGGCCTAGCATCG+AGG + chr1_1:71995580-71995599 Msa0041550:intron 50.0%
TTGCGTAGTTCCTCGATGCT+AGG - chr1_1:71995593-71995612 None:intergenic 50.0%
GAGAGAACCGTGAACTTCCT+TGG + chr1_1:71995897-71995916 Msa0041550:CDS 50.0%
GCACATCCCAAGGAAGTTCA+CGG - chr1_1:71995907-71995926 None:intergenic 50.0%
CCTCCAATTCTTGCACACAC+CGG - chr1_1:71995978-71995997 None:intergenic 50.0%
CGGTGTGTGCAAGAATTGGA+GGG + chr1_1:71995976-71995995 Msa0041550:CDS 50.0%
GTCACTGACAAGGCCAACAT+AGG + chr1_1:71996463-71996482 Msa0041550:CDS 50.0%
CACTGACAAGGCCAACATAG+GGG + chr1_1:71996465-71996484 Msa0041550:CDS 50.0%
CAAGCTGACTACCCCTATGT+TGG - chr1_1:71996479-71996498 None:intergenic 50.0%
GCAATGTCGCCCAAAGTTTC+CGG - chr1_1:71996667-71996686 None:intergenic 50.0%
ATGCATTGAGCAACCCCAAC+AGG + chr1_1:71996716-71996735 Msa0041550:CDS 50.0%
ATTGAGCAACCCCAACAGGT+GGG + chr1_1:71996720-71996739 Msa0041550:CDS 50.0%
CCCACTCTTAATCCATGCCG+AGG + chr1_1:71991658-71991677 Msa0041550:exon 55.0%
!!! GCACTTGGTTTTGGCGTCCT+CGG - chr1_1:71991678-71991697 None:intergenic 55.0%
GGCGTGTGGTAGAAACATGG+TGG - chr1_1:71992293-71992312 None:intergenic 55.0%
GGCCCCACATCTTTCATCCT+TGG + chr1_1:71993157-71993176 Msa0041550:intron 55.0%
TTGTCAATAGCGGCCGCTAC+CGG + chr1_1:71993520-71993539 Msa0041550:intron 55.0%
CGTGGCGTGTTTCGAGAAAG+CGG + chr1_1:71993587-71993606 Msa0041550:intron 55.0%
TTCGAGAAAGCGGCTGAAGC+TGG + chr1_1:71993597-71993616 Msa0041550:intron 55.0%
CGCGAATGCGGGTATAAAGC+AGG + chr1_1:71993620-71993639 Msa0041550:intron 55.0%
! TCAAAGCGGAAAGAGGGCGT+GGG - chr1_1:71994167-71994186 None:intergenic 55.0%
! TATTTTCCCGGCTGCCACGT+CGG + chr1_1:71995617-71995636 Msa0041550:intron 55.0%
CCGGTGTGTGCAAGAATTGG+AGG + chr1_1:71995975-71995994 Msa0041550:CDS 55.0%
CATTGAGCAACCCCAACAGG+TGG + chr1_1:71996719-71996738 Msa0041550:CDS 55.0%
TTGAGCAACCCCAACAGGTG+GGG + chr1_1:71996721-71996740 Msa0041550:CDS 55.0%
!!! TGGTTTTGGCGTCCTCGGCA+TGG - chr1_1:71991673-71991692 None:intergenic 60.0%
ATGTGGGGCCATGCCACCTA+TGG - chr1_1:71993147-71993166 None:intergenic 60.0%
GTCAAAGCGGAAAGAGGGCG+TGG - chr1_1:71994168-71994187 None:intergenic 60.0%
GTGTCAAACAGAGGCCGACG+TGG - chr1_1:71995634-71995653 None:intergenic 60.0%
!!! GTTTTTGGCCGCGATCGCGC+CGG - chr1_1:71993542-71993561 None:intergenic 65.0%
CGCGACATAGCGCTCCAACG+TGG + chr1_1:71993569-71993588 Msa0041550:intron 65.0%
GGCTGAAGCTGGCGCGAATG+CGG + chr1_1:71993608-71993627 Msa0041550:intron 65.0%
GCTGAAGCTGGCGCGAATGC+GGG + chr1_1:71993609-71993628 Msa0041550:intron 65.0%
! CGGGCGCTATTTCGGTGACG+CGG - chr1_1:71994137-71994156 None:intergenic 65.0%
!! GCGCGTAGCGGGCGCTATTT+CGG - chr1_1:71994145-71994164 None:intergenic 65.0%
! AAGAGGGCGTGGGCGCGTAG+CGG - chr1_1:71994157-71994176 None:intergenic 70.0%
ACAGAGGCCGACGTGGCAGC+CGG - chr1_1:71995627-71995646 None:intergenic 70.0%
! AGAGGGCGTGGGCGCGTAGC+GGG - chr1_1:71994156-71994175 None:intergenic 75.0%
CAGAGGCCGACGTGGCAGCC+GGG - chr1_1:71995626-71995645 None:intergenic 75.0%
! GGCCGCTACCGGCGCGATCG+CGG + chr1_1:71993531-71993550 Msa0041550:intron 80.0%
!! GGCCGCGATCGCGCCGGTAG+CGG - chr1_1:71993536-71993555 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71991138 71997065 71991138 ID=Msa0041550;Name=Msa0041550
chr1_1 mRNA 71991138 71997065 71991138 ID=Msa0041550-mRNA-1;Parent=Msa0041550;Name=Msa0041550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=287|1|1|1|0|0.25|4|141|437
chr1_1 exon 71991138 71991327 71991138 ID=Msa0041550-mRNA-1:exon:23910;Parent=Msa0041550-mRNA-1
chr1_1 exon 71991575 71991701 71991575 ID=Msa0041550-mRNA-1:exon:23911;Parent=Msa0041550-mRNA-1
chr1_1 exon 71991986 71992220 71991986 ID=Msa0041550-mRNA-1:exon:23912;Parent=Msa0041550-mRNA-1
chr1_1 exon 71995876 71997065 71995876 ID=Msa0041550-mRNA-1:exon:23913;Parent=Msa0041550-mRNA-1
chr1_1 five_prime_UTR 71991138 71991327 71991138 ID=Msa0041550-mRNA-1:five_prime_utr;Parent=Msa0041550-mRNA-1
chr1_1 five_prime_UTR 71991575 71991671 71991575 ID=Msa0041550-mRNA-1:five_prime_utr;Parent=Msa0041550-mRNA-1
chr1_1 CDS 71991672 71991701 71991672 ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1 CDS 71991986 71992220 71991986 ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1 CDS 71995876 71996924 71995876 ID=Msa0041550-mRNA-1:cds;Parent=Msa0041550-mRNA-1
chr1_1 three_prime_UTR 71996925 71997065 71996925 ID=Msa0041550-mRNA-1:three_prime_utr;Parent=Msa0041550-mRNA-1
Gene Sequence

>Msa0041550

ATGCCGAGGACGCCAAAACCAAGTGCAATGTTGAAGATCCTCCAAAACAACAATGATTCATTGGCGTATCTTATTAAGGCAGTCAAAGATGAATTTCAATATAATAACACGGAAAAGTATAATGAGTTTTTAAAACTCATTAAGGATTACCAGGTTGGAATAACTCGTATAAGTCCTAAAAGGCATGGCCAGCTTATAAACATACTCAAAGCAAAAGTGAGGAAGCTGCTTCGAGAGCATACAAGTTTAATTTTGGAGACCACTGGAAAACAGGTGAAGATGGTAGGAGAGAACCGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAACACTAGATTTTGACGACCACTTTCAATTTTCCGGTGTGTGCAAGAATTGGAGGGCTTTCAATAAAATTTATTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCTTCAAATTTCAGGTCATCCTAAGGGATCATTTTCCTTTTTTAGCATACCCGACCAAAAAGTTTATTGCTCGAAGATGGGGAAGTACTTCTTCTACTCTGCCTATATTACGATTTCTAGCGGATATTTTATCATGGGGGGTTACAATAATAATTCATTTATGCTAATGAATCCATTCACAAGAATTAAAAAGGTAGTCAATACTCCTACTTCGAAAGTTATCCGTTCTTATTTAACTAAACGCGCCTTGCTTGCTTTTGACAAATGCTCCGAGGAATTTGTCTTGGTCGTTTTATGCAAAGATCATTTGCATGTCTATCAATCTCGAAATTTAGGTTGGGTTGCTTATTCGAGAATGGAAGATCCAGAGAGAATTGTTGACTTTGTGGTTTTGCAAAATATAATATATGTTGTCACTGACAAGGCCAACATAGGGGTAGTCAGCTTGAATTCAGCAAGTATTAAATTTCTAAAATTGAAGAATACTCCCAAAAGATTTTGCTTTTACACAAGGTTGGTTAATTGTGATGGGCAACTTTTAGTGGTTGATGTAACGTCCAAGAAAATAAGTAATGTCTACAAAATAGATTTCTCAACCATGAATTATGTCAAACCGGAAACTTTGGGCGACATTGCATTATTTTATGTATCATACGGAAGTTGTTATGCATTGAGCAACCCCAACAGGTGGGGATATGAAAGTAACTCTGTCTATATCATCAATTCTCTATCTACAAGCTGTAGTGTGTATTCGGTTGGTGATAATAAATTGCAAAAGTACATTACACTTTCAACTCCTCATGGAACAAGTTCCTTGTCTGACTGGTGTTTTAGACATCACCAATTTGAGGTAGATTATTCTCTAGTTGAGTAA
Protein sequence

>Msa0041550

MPRTPKPSAMLKILQNNNDSLAYLIKAVKDEFQYNNTEKYNEFLKLIKDYQVGITRISPKRHGQLINILKAKVRKLLREHTSLILETTGKQVKMVGENRELPWDVLDIISKTLDFDDHFQFSGVCKNWRAFNKIYWRNFLASQEPLLLQISGHPKGSFSFFSIPDQKVYCSKMGKYFFYSAYITISSGYFIMGGYNNNSFMLMNPFTRIKKVVNTPTSKVIRSYLTKRALLAFDKCSEEFVLVVLCKDHLHVYQSRNLGWVAYSRMEDPERIVDFVVLQNIIYVVTDKANIGVVSLNSASIKFLKLKNTPKRFCFYTRLVNCDGQLLVVDVTSKKISNVYKIDFSTMNYVKPETLGDIALFYVSYGSCYALSNPNRWGYESNSVYIINSLSTSCSVYSVGDNKLQKYITLSTPHGTSSLSDWCFRHHQFEVDYSLVE*