AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAATGTATACATAAAA+TGG 0.249503 1_1:+72030083 None:intergenic
GATTAAAGCATTGTTTGATA+TGG 0.251816 1_1:+72027773 None:intergenic
GATGGAGGAGGAAGATTTAC+AGG 0.253012 1_1:-72027668 Msa0041600:CDS
GATGTGAAACTTACAAAATT+TGG 0.281995 1_1:+72029186 None:intergenic
TTCGCATATCCTATATTTAT+AGG 0.290832 1_1:+72029736 None:intergenic
ATTCAGCAGTCATTACTTAA+TGG 0.312849 1_1:-72028039 Msa0041600:CDS
ACTGCTGAATGGCCTGGATT+TGG 0.314997 1_1:+72028052 None:intergenic
CTGCTGAATGGCCTGGATTT+GGG 0.328827 1_1:+72028053 None:intergenic
GAATTCAAACCATTTCTTCA+TGG 0.342694 1_1:-72027718 Msa0041600:CDS
CCGCTTCTTCATCGCTCTCC+TGG 0.352214 1_1:-72029693 Msa0041600:five_prime_UTR
TCCGGCTATATGTATATGTT+TGG 0.352437 1_1:-72029989 Msa0041600:five_prime_UTR
TTAAAAGCAAAGTGCTTTCA+AGG 0.359219 1_1:-72027747 Msa0041600:CDS
AATAGTAGTGATATTTGAAA+TGG 0.359927 1_1:+72030120 None:intergenic
TAGGCAGAGTTGCATGGGCT+TGG 0.360716 1_1:+72029755 None:intergenic
GCAACTCTGCCTATAAATAT+AGG 0.367689 1_1:-72029745 Msa0041600:five_prime_UTR
TTGAGTTCAAGAAAATTTGA+TGG 0.369456 1_1:-72027546 None:intergenic
TGAATTGGTGCAGCTGCCAC+TGG 0.374615 1_1:+72027841 None:intergenic
ACAGCTGCCACTGGCTGAAT+TGG 0.382164 1_1:+72027826 None:intergenic
AAAGTTCTCATTTCCTCAAC+TGG 0.387732 1_1:+72027802 None:intergenic
GCGTGCAAGAAAATTGAAAT+AGG 0.393272 1_1:+72029390 None:intergenic
GGAGGAAGATTTACAGGTTG+AGG 0.402580 1_1:-72027662 Msa0041600:CDS
ACTTGAAAGCCATGAAGAAA+TGG 0.403524 1_1:+72027709 None:intergenic
CTTCCTCCTCCATCTGAACT+AGG 0.426813 1_1:+72027677 None:intergenic
ATCTGATCTTCATCATCGTC+TGG 0.432973 1_1:-72029327 Msa0041600:intron
GGCTATATGTATATGTTTGG+TGG 0.436437 1_1:-72029986 Msa0041600:five_prime_UTR
TCTCTTAGATCTTCTTTCTC+CGG 0.438133 1_1:-72030007 Msa0041600:five_prime_UTR
AGGAGCACAGCAAGAGGATG+TGG 0.454778 1_1:-72027998 Msa0041600:CDS
GAGGAAGATTTACAGGTTGA+GGG 0.459350 1_1:-72027661 Msa0041600:CDS
TGCTGCTGTTGCCCAAATCC+AGG 0.468012 1_1:-72028064 Msa0041600:CDS
AGAGATTCAGCAAGAGGATG+TGG 0.473861 1_1:-72027974 Msa0041600:CDS
ATAGTAGTGATATTTGAAAT+GGG 0.487689 1_1:+72030121 None:intergenic
CAGCTGATATGGCGCCGCGT+TGG 0.491046 1_1:-72028311 Msa0041600:CDS
AGTTGAAATGGGTAACAAGT+TGG 0.492429 1_1:-72027581 Msa0041600:CDS
AGAAGAAAACCTAGTTCAGA+TGG 0.493140 1_1:-72027686 Msa0041600:CDS
TATTTATAGGCAGAGTTGCA+TGG 0.498494 1_1:+72029749 None:intergenic
GGTTGAGGGTAATATTGCCT+TGG 0.517191 1_1:-72027647 Msa0041600:CDS
TACCTGGGCATTGACGAGCT+TGG 0.517362 1_1:-72028264 Msa0041600:CDS
ATTTATAGGCAGAGTTGCAT+GGG 0.519295 1_1:+72029750 None:intergenic
GACGAGCTTGGTTACAACTT+CGG 0.522070 1_1:-72028252 Msa0041600:CDS
TGAGACTGAAACCCTCTACC+TGG 0.523399 1_1:-72028280 Msa0041600:CDS
GCTCGTCAATGCCCAGGTAG+AGG 0.524046 1_1:+72028268 None:intergenic
ATGTTTGGTGGTTTATGTGT+TGG 0.524290 1_1:-72029974 Msa0041600:five_prime_UTR
ATTAAGTAATGACTGCTGAA+TGG 0.529258 1_1:+72028041 None:intergenic
ATACATTTGTTGGGCTATGT+TGG 0.531314 1_1:-72030072 Msa0041600:five_prime_UTR
CCTTCTCACTTCTATTCAGA+AGG 0.533836 1_1:+72028196 None:intergenic
CAGGAGAGCGATGAAGAAGC+GGG 0.538300 1_1:+72029694 None:intergenic
TCACTTCTATTCAGAAGGAC+AGG 0.541072 1_1:+72028201 None:intergenic
CTCGTCAATGCCCAGGTAGA+GGG 0.542274 1_1:+72028269 None:intergenic
GTAATGACTGCTGAATGGCC+TGG 0.548918 1_1:+72028046 None:intergenic
TCAACTGGTACAGCTGCCAC+TGG 0.556351 1_1:+72027817 None:intergenic
AACCAAGCTCGTCAATGCCC+AGG 0.566045 1_1:+72028262 None:intergenic
ACCAAACATATACATATAGC+CGG 0.569722 1_1:+72029988 None:intergenic
AGCTGCACCAATTCAGCCAG+TGG 0.575109 1_1:-72027833 Msa0041600:CDS
TGTTGCAGAGATTCAGCAAG+AGG 0.579533 1_1:-72027884 Msa0041600:CDS
TGTTGCAGAGATTCAGCAAG+AGG 0.579533 1_1:-72027908 Msa0041600:CDS
TGTTGCAGAGATTCAGCAAG+AGG 0.579533 1_1:-72027932 Msa0041600:CDS
TGTGGCAGAGATTCAGCAAG+AGG 0.579533 1_1:-72027956 Msa0041600:CDS
TGTGGCAGAGATTCAGCAAG+AGG 0.579533 1_1:-72027980 Msa0041600:CDS
TTGATCAGCAATAACATCCA+AGG 0.579985 1_1:+72027630 None:intergenic
AGTGGCAGCTGTACCAGTTG+AGG 0.589059 1_1:-72027815 Msa0041600:CDS
AGAGGAAGGAGCACAGCAAG+AGG 0.590839 1_1:-72028004 Msa0041600:CDS
CCAGGAGAGCGATGAAGAAG+CGG 0.590996 1_1:+72029693 None:intergenic
CCTTCTGAATAGAAGTGAGA+AGG 0.592623 1_1:-72028196 Msa0041600:CDS
GTGAAGCTTCAAAATGCTCC+AGG 0.593687 1_1:+72029675 None:intergenic
AAACCTAGTTCAGATGGAGG+AGG 0.595589 1_1:-72027680 Msa0041600:CDS
AGAAAACCTAGTTCAGATGG+AGG 0.620135 1_1:-72027683 Msa0041600:CDS
TAGAAGTGAGAAGGCTTGTG+CGG 0.620929 1_1:-72028187 Msa0041600:CDS
TAGTGATATTTGAAATGGGT+AGG 0.632822 1_1:+72030125 None:intergenic
AATATGTTTAAGCCTTCATG+TGG 0.636040 1_1:-72029896 Msa0041600:intron
GGATTTGGGCAACAGCAGCA+TGG 0.641520 1_1:+72028067 None:intergenic
GAGACTGAAACCCTCTACCT+GGG 0.643963 1_1:-72028279 Msa0041600:CDS
GTTGTTGCAAAATATGCTAG+AGG 0.656440 1_1:-72028121 Msa0041600:CDS
TGCAGAAATTCAGCAGCCAG+TGG 0.668606 1_1:-72027857 Msa0041600:CDS
AATGGGTAGGTAGTTGTGTG+CGG 0.715796 1_1:+72030138 None:intergenic
GTCTCATGTATTGACCAACG+CGG 0.812108 1_1:+72028297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATGTATACATTTGTT+GGG - chr1_1:72027615-72027634 Msa0041600:CDS 15.0%
!! GAATTAGGTAAATTTAAAAA+CGG + chr1_1:72028120-72028139 None:intergenic 15.0%
!! AAAATTAGGTTAAAAGAAAT+AGG + chr1_1:72028547-72028566 None:intergenic 15.0%
!! GAAAGAAAATTAGTAAAATT+AGG + chr1_1:72028561-72028580 None:intergenic 15.0%
!! AACAAAAAATTAGTAAAAGT+AGG + chr1_1:72028669-72028688 None:intergenic 15.0%
!! AAATAAACAAAGAATTAATC+AGG + chr1_1:72029359-72029378 None:intergenic 15.0%
!! ATAAAAAATCATGAGATTTA+TGG - chr1_1:72029471-72029490 Msa0041600:intron 15.0%
!!! AAAAAATTTGAAGTTGAAAT+GGG - chr1_1:72030104-72030123 Msa0041600:five_prime_UTR 15.0%
!!! ATAGTAGTGATATTTGAAAT+GGG + chr1_1:72027578-72027597 None:intergenic 20.0%
!! AATAGTAGTGATATTTGAAA+TGG + chr1_1:72027579-72027598 None:intergenic 20.0%
!! CAACAAATGTATACATAAAA+TGG + chr1_1:72027616-72027635 None:intergenic 20.0%
!!! CATTTTATGTATACATTTGT+TGG - chr1_1:72027614-72027633 Msa0041600:CDS 20.0%
!! GAGAAGAAATTTAGTAAAAA+AGG + chr1_1:72028425-72028444 None:intergenic 20.0%
!!! GGATTTTTGTAAATTAGATT+TGG - chr1_1:72028757-72028776 Msa0041600:intron 20.0%
!!! TGATGATGTTAGATATATAA+TGG - chr1_1:72028857-72028876 Msa0041600:intron 20.0%
!!! TGATGATGTTAGATATATTA+TGG - chr1_1:72029071-72029090 Msa0041600:intron 20.0%
!! AATGATAGTTAATTATCGTT+TGG - chr1_1:72029192-72029211 Msa0041600:intron 20.0%
!!! CAAAAAATTTGAAGTTGAAA+TGG - chr1_1:72030103-72030122 Msa0041600:five_prime_UTR 20.0%
!!! ATATTTTGATATTGGGTGAT+TGG - chr1_1:72027889-72027908 Msa0041600:CDS 25.0%
! TTCGCATATCCTATATTTAT+AGG + chr1_1:72027963-72027982 None:intergenic 25.0%
! TATGAGATAAAACACGAATT+AGG + chr1_1:72028135-72028154 None:intergenic 25.0%
! TGTAAGAAATTGAGCAAAAA+AGG + chr1_1:72028273-72028292 None:intergenic 25.0%
! GATGTGAAACTTACAAAATT+TGG + chr1_1:72028513-72028532 None:intergenic 25.0%
! TTTACAAAAATCCAATGCAA+AGG + chr1_1:72028750-72028769 None:intergenic 25.0%
!!! ATATATAATGGTTTGTTGAG+TGG - chr1_1:72028869-72028888 Msa0041600:intron 25.0%
!!! TGGTGTTTTTGAATTTCATT+TGG - chr1_1:72028889-72028908 Msa0041600:intron 25.0%
! AGAAGTTAATTAGTGAGATA+CGG + chr1_1:72028928-72028947 None:intergenic 25.0%
! TGGTTCTTGTAAATTAGTTA+TGG - chr1_1:72028968-72028987 Msa0041600:intron 25.0%
!!! ATATATTATGGTTTGTTGAG+TGG - chr1_1:72029083-72029102 Msa0041600:intron 25.0%
! CAGGAATTACAAAGTAAATA+CGG + chr1_1:72029142-72029161 None:intergenic 25.0%
!!! GATTAAAGCATTGTTTGATA+TGG + chr1_1:72029926-72029945 None:intergenic 25.0%
! TAGTGATATTTGAAATGGGT+AGG + chr1_1:72027574-72027593 None:intergenic 30.0%
ACCAAACATATACATATAGC+CGG + chr1_1:72027711-72027730 None:intergenic 30.0%
AATATGTTTAAGCCTTCATG+TGG - chr1_1:72027800-72027819 Msa0041600:CDS 30.0%
GAAATTGAGAGAATAGCAAA+AGG + chr1_1:72028094-72028113 None:intergenic 30.0%
AATGCAAAGGATGACATATT+TGG + chr1_1:72028737-72028756 None:intergenic 30.0%
AAATATGTCATCCTTTGCAT+TGG - chr1_1:72028736-72028755 Msa0041600:intron 30.0%
TCATTCATTTGACGTTGAAT+TGG - chr1_1:72028812-72028831 Msa0041600:intron 30.0%
AAATATGTCTTCCTTTGCAT+TGG - chr1_1:72028948-72028967 Msa0041600:intron 30.0%
ATTTACAAGAACCAATGCAA+AGG + chr1_1:72028962-72028981 None:intergenic 30.0%
!! GATAGTTAATTGTTGTTTGC+AGG + chr1_1:72029161-72029180 None:intergenic 30.0%
!! ATTATCGTTTGGAGTCTTTT+TGG - chr1_1:72029203-72029222 Msa0041600:CDS 30.0%
TTAATCAGGAATAATGCAGT+AGG + chr1_1:72029345-72029364 None:intergenic 30.0%
! TATTTTACCTACAGCTGATA+TGG - chr1_1:72029374-72029393 Msa0041600:CDS 30.0%
ATTAAGTAATGACTGCTGAA+TGG + chr1_1:72029658-72029677 None:intergenic 30.0%
ATTCAGCAGTCATTACTTAA+TGG - chr1_1:72029657-72029676 Msa0041600:exon 30.0%
! TTAAAAGCAAAGTGCTTTCA+AGG - chr1_1:72029949-72029968 Msa0041600:five_prime_UTR 30.0%
GAATTCAAACCATTTCTTCA+TGG - chr1_1:72029978-72029997 Msa0041600:five_prime_UTR 30.0%
! ATACATTTGTTGGGCTATGT+TGG - chr1_1:72027624-72027643 Msa0041600:CDS 35.0%
TCTCTTAGATCTTCTTTCTC+CGG - chr1_1:72027689-72027708 Msa0041600:CDS 35.0%
TCCGGCTATATGTATATGTT+TGG - chr1_1:72027707-72027726 Msa0041600:CDS 35.0%
GGCTATATGTATATGTTTGG+TGG - chr1_1:72027710-72027729 Msa0041600:CDS 35.0%
! ATGTTTGGTGGTTTATGTGT+TGG - chr1_1:72027722-72027741 Msa0041600:CDS 35.0%
TTCTTGGCCCAATAACAAAA+AGG - chr1_1:72027918-72027937 Msa0041600:CDS 35.0%
ATTTATAGGCAGAGTTGCAT+GGG + chr1_1:72027949-72027968 None:intergenic 35.0%
TATTTATAGGCAGAGTTGCA+TGG + chr1_1:72027950-72027969 None:intergenic 35.0%
GCAACTCTGCCTATAAATAT+AGG - chr1_1:72027951-72027970 Msa0041600:CDS 35.0%
GCGTGCAAGAAAATTGAAAT+AGG + chr1_1:72028309-72028328 None:intergenic 35.0%
GTGAGATACAACACAAAACT+AGG + chr1_1:72028704-72028723 None:intergenic 35.0%
TTCTTTACGTGACGTTGAAT+TGG - chr1_1:72029026-72029045 Msa0041600:intron 35.0%
!! TGGTGTTTTTGAATTCCATG+TGG - chr1_1:72029103-72029122 Msa0041600:intron 35.0%
GGAAATAAAGAATTTGCACC+AGG + chr1_1:72029324-72029343 None:intergenic 35.0%
GTTGTTGCAAAATATGCTAG+AGG - chr1_1:72029575-72029594 Msa0041600:intron 35.0%
AAAGTTCTCATTTCCTCAAC+TGG + chr1_1:72029897-72029916 None:intergenic 35.0%
ACTTGAAAGCCATGAAGAAA+TGG + chr1_1:72029990-72030009 None:intergenic 35.0%
AGAAGAAAACCTAGTTCAGA+TGG - chr1_1:72030010-72030029 Msa0041600:five_prime_UTR 35.0%
TTGATCAGCAATAACATCCA+AGG + chr1_1:72030069-72030088 None:intergenic 35.0%
AGTTGAAATGGGTAACAAGT+TGG - chr1_1:72030115-72030134 Msa0041600:five_prime_UTR 35.0%
! GAACGTGTTTTACCACATGA+AGG + chr1_1:72027815-72027834 None:intergenic 40.0%
!! GGGTGATTGGCTTAATTTCT+TGG - chr1_1:72027902-72027921 Msa0041600:CDS 40.0%
!!! GGCTTGGCCTTTTTGTTATT+GGG + chr1_1:72027928-72027947 None:intergenic 40.0%
! AGATGATGATGAAGATGCAG+CGG + chr1_1:72028217-72028236 None:intergenic 40.0%
ATCTGATCTTCATCATCGTC+TGG - chr1_1:72028369-72028388 Msa0041600:intron 40.0%
TAGTGAGATACGGTACAGAA+TGG + chr1_1:72028918-72028937 None:intergenic 40.0%
TGCACTTATGAATTGCTGAC+AGG + chr1_1:72029241-72029260 None:intergenic 40.0%
TCACTTCTATTCAGAAGGAC+AGG + chr1_1:72029498-72029517 None:intergenic 40.0%
CCTTCTCACTTCTATTCAGA+AGG + chr1_1:72029503-72029522 None:intergenic 40.0%
CCTTCTGAATAGAAGTGAGA+AGG - chr1_1:72029500-72029519 Msa0041600:intron 40.0%
!! TAATGGTTTTGCACAGCAAG+AGG - chr1_1:72029674-72029693 Msa0041600:five_prime_UTR 40.0%
AGAAAACCTAGTTCAGATGG+AGG - chr1_1:72030013-72030032 Msa0041600:five_prime_UTR 40.0%
! GAGGAAGATTTACAGGTTGA+GGG - chr1_1:72030035-72030054 Msa0041600:five_prime_UTR 40.0%
AATGGGTAGGTAGTTGTGTG+CGG + chr1_1:72027561-72027580 None:intergenic 45.0%
!! GGGCTTGGCCTTTTTGTTAT+TGG + chr1_1:72027929-72027948 None:intergenic 45.0%
GTGAAGCTTCAAAATGCTCC+AGG + chr1_1:72028024-72028043 None:intergenic 45.0%
! GATGATGATGAAGATGCAGC+GGG + chr1_1:72028216-72028235 None:intergenic 45.0%
! GTTCTAATGATTTGCGTGCC+TGG - chr1_1:72029303-72029322 Msa0041600:intron 45.0%
! GTCTCATGTATTGACCAACG+CGG + chr1_1:72029402-72029421 None:intergenic 45.0%
GACGAGCTTGGTTACAACTT+CGG - chr1_1:72029444-72029463 Msa0041600:intron 45.0%
TAGAAGTGAGAAGGCTTGTG+CGG - chr1_1:72029509-72029528 Msa0041600:intron 45.0%
AGAGATTCAGCAAGAGGATG+TGG - chr1_1:72029722-72029741 Msa0041600:five_prime_UTR 45.0%
TGTTGCAGAGATTCAGCAAG+AGG - chr1_1:72029764-72029783 Msa0041600:intron 45.0%
TGTTGCAGAGATTCAGCAAG+AGG - chr1_1:72029764-72029783 Msa0041600:intron 45.0%
TGTTGCAGAGATTCAGCAAG+AGG - chr1_1:72029764-72029783 Msa0041600:intron 45.0%
AAACCTAGTTCAGATGGAGG+AGG - chr1_1:72030016-72030035 Msa0041600:five_prime_UTR 45.0%
GATGGAGGAGGAAGATTTAC+AGG - chr1_1:72030028-72030047 Msa0041600:five_prime_UTR 45.0%
GGAGGAAGATTTACAGGTTG+AGG - chr1_1:72030034-72030053 Msa0041600:five_prime_UTR 45.0%
GGTTGAGGGTAATATTGCCT+TGG - chr1_1:72030049-72030068 Msa0041600:five_prime_UTR 45.0%
!!! AAATTTTTATATTTTGATAT+TGG - chr1_1:72027881-72027900 Msa0041600:CDS 5.0%
!!! AATTTTTATATTTTGATATT+GGG - chr1_1:72027882-72027901 Msa0041600:CDS 5.0%
GTTCATCGTCGTAGAGTAGG+AGG - chr1_1:72028181-72028200 Msa0041600:CDS 50.0%
GGTACAGAACTGAAGCCACA+TGG + chr1_1:72029121-72029140 None:intergenic 50.0%
TGAGACTGAAACCCTCTACC+TGG - chr1_1:72029416-72029435 Msa0041600:intron 50.0%
GAGACTGAAACCCTCTACCT+GGG - chr1_1:72029417-72029436 Msa0041600:intron 50.0%
CTGCTGAATGGCCTGGATTT+GGG + chr1_1:72029646-72029665 None:intergenic 50.0%
ACTGCTGAATGGCCTGGATT+TGG + chr1_1:72029647-72029666 None:intergenic 50.0%
GTAATGACTGCTGAATGGCC+TGG + chr1_1:72029653-72029672 None:intergenic 50.0%
! GGTTTTGCACAGCAAGAGGA+AGG - chr1_1:72029678-72029697 Msa0041600:five_prime_UTR 50.0%
TGTGGCAGAGATTCAGCAAG+AGG - chr1_1:72029716-72029735 Msa0041600:five_prime_UTR 50.0%
TGTGGCAGAGATTCAGCAAG+AGG - chr1_1:72029716-72029735 Msa0041600:five_prime_UTR 50.0%
TGCAGAAATTCAGCAGCCAG+TGG - chr1_1:72029839-72029858 Msa0041600:intron 50.0%
CTTCCTCCTCCATCTGAACT+AGG + chr1_1:72030022-72030041 None:intergenic 50.0%
TAGGCAGAGTTGCATGGGCT+TGG + chr1_1:72027944-72027963 None:intergenic 55.0%
CAGGAGAGCGATGAAGAAGC+GGG + chr1_1:72028005-72028024 None:intergenic 55.0%
CCAGGAGAGCGATGAAGAAG+CGG + chr1_1:72028006-72028025 None:intergenic 55.0%
CGCGTTCATCGTCGTAGAGT+AGG - chr1_1:72028178-72028197 Msa0041600:CDS 55.0%
CTCGTCAATGCCCAGGTAGA+GGG + chr1_1:72029430-72029449 None:intergenic 55.0%
!! TACCTGGGCATTGACGAGCT+TGG - chr1_1:72029432-72029451 Msa0041600:intron 55.0%
AACCAAGCTCGTCAATGCCC+AGG + chr1_1:72029437-72029456 None:intergenic 55.0%
GGATTTGGGCAACAGCAGCA+TGG + chr1_1:72029632-72029651 None:intergenic 55.0%
TGCTGCTGTTGCCCAAATCC+AGG - chr1_1:72029632-72029651 Msa0041600:intron 55.0%
! AGAGGAAGGAGCACAGCAAG+AGG - chr1_1:72029692-72029711 Msa0041600:five_prime_UTR 55.0%
! AGGAGCACAGCAAGAGGATG+TGG - chr1_1:72029698-72029717 Msa0041600:five_prime_UTR 55.0%
TGAATTGGTGCAGCTGCCAC+TGG + chr1_1:72029858-72029877 None:intergenic 55.0%
AGCTGCACCAATTCAGCCAG+TGG - chr1_1:72029863-72029882 Msa0041600:intron 55.0%
! ACAGCTGCCACTGGCTGAAT+TGG + chr1_1:72029873-72029892 None:intergenic 55.0%
TCAACTGGTACAGCTGCCAC+TGG + chr1_1:72029882-72029901 None:intergenic 55.0%
AGTGGCAGCTGTACCAGTTG+AGG - chr1_1:72029881-72029900 Msa0041600:intron 55.0%
CCGCTTCTTCATCGCTCTCC+TGG - chr1_1:72028003-72028022 Msa0041600:CDS 60.0%
GCTCGTCAATGCCCAGGTAG+AGG + chr1_1:72029431-72029450 None:intergenic 60.0%
CGCGGCGCCATATCAGCTGT+AGG + chr1_1:72029384-72029403 None:intergenic 65.0%
CAGCTGATATGGCGCCGCGT+TGG - chr1_1:72029385-72029404 Msa0041600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72027549 72030169 72027549 ID=Msa0041600;Name=Msa0041600
chr1_1 mRNA 72027549 72030169 72027549 ID=Msa0041600-mRNA-1;Parent=Msa0041600;Name=Msa0041600-mRNA-1;_AED=0.25;_eAED=0.25;_QI=378|0.5|0.4|1|0|0|5|0|316
chr1_1 exon 72027549 72028330 72027549 ID=Msa0041600-mRNA-1:exon:23955;Parent=Msa0041600-mRNA-1
chr1_1 exon 72029196 72029235 72029196 ID=Msa0041600-mRNA-1:exon:23954;Parent=Msa0041600-mRNA-1
chr1_1 exon 72029328 72029424 72029328 ID=Msa0041600-mRNA-1:exon:23953;Parent=Msa0041600-mRNA-1
chr1_1 exon 72029642 72029778 72029642 ID=Msa0041600-mRNA-1:exon:23952;Parent=Msa0041600-mRNA-1
chr1_1 exon 72029897 72030169 72029897 ID=Msa0041600-mRNA-1:exon:23951;Parent=Msa0041600-mRNA-1
chr1_1 five_prime_UTR 72029897 72030169 72029897 ID=Msa0041600-mRNA-1:five_prime_utr;Parent=Msa0041600-mRNA-1
chr1_1 five_prime_UTR 72029674 72029778 72029674 ID=Msa0041600-mRNA-1:five_prime_utr;Parent=Msa0041600-mRNA-1
chr1_1 CDS 72029642 72029673 72029642 ID=Msa0041600-mRNA-1:cds;Parent=Msa0041600-mRNA-1
chr1_1 CDS 72029328 72029424 72029328 ID=Msa0041600-mRNA-1:cds;Parent=Msa0041600-mRNA-1
chr1_1 CDS 72029196 72029235 72029196 ID=Msa0041600-mRNA-1:cds;Parent=Msa0041600-mRNA-1
chr1_1 CDS 72027549 72028330 72027549 ID=Msa0041600-mRNA-1:cds;Parent=Msa0041600-mRNA-1
Gene Sequence

>Msa0041600

ATGCATCATCTTCTTCGTAATGCAACATCTTCTTTGTTAATTTTCCTATTTCAATTTTCTTGCACGCAGCATTTCATCATCTTCATCGCGTTCATCGTTGTCGCATCATCTGATCTTCATCATCGTCTGCATAACGTACGTTTGATATCATTTTCACCAAATTTTGTAACTGATATGGCGCCGCGTTGGTCAATACATGAGACTGAAACCCTCTACCTGGGCATTGACGAGCTTGGTTACAACTTCGGAGCTATAAAAAATCATGAGATTTATGGTCCTGTCCTTCTGAATAGAAGTGAGAAGGCTTGTGCGGATAAAGTTCAGAATGATACTAGAAGTTACGCAAGAAAACAAGCGTTGTTGCAAAATATGCTAGAGGAACATGTTGCGCTTCAATTGATTGCGCAGAACCATGCTGCTGTTGCCCAAATCCAGGCCATTCAGCAGTCATTACTTAATGGTTTTGCACAGCAAGAGGAAGGAGCACAGCAAGAGGATGTGGCAGAGATTCAGCAAGAGGATGTGGCAGAGATTCAGCAAGAGGATGTTGCAGAGATTCAGCAAGAGGATGTTGCAGAGATTCAGCAAGAGGATGTTGCAGAGATTCAGCAAGAGGATGTTGCAGAAATTCAGCAGCCAGTGGCAGCTGCACCAATTCAGCCAGTGGCAGCTGTACCAGTTGAGGAAATGAGAACTTTGTTAATCCATATCAAACAATGCTTTAATCAGTTTAAAAGCAAAGTGCTTTCAAGGTTTGATGAATTCAAACCATTTCTTCATGGCTTTCAAGTAGAAGAAAACCTAGTTCAGATGGAGGAGGAAGATTTACAGGTTGAGGGTAATATTGCCTTGGATGTTATTGCTGATCAAATTGAAGAAAACTTCAAAAAATTTGAAGTTGAAATGGGTAACAAGTTGGACAAAGTGCTCGTTGAGTTCAAGAAAATTTGA
Protein sequence

>Msa0041600

MHHLLRNATSSLLIFLFQFSCTQHFIIFIAFIVVASSDLHHRLHNVRLISFSPNFVTDMAPRWSIHETETLYLGIDELGYNFGAIKNHEIYGPVLLNRSEKACADKVQNDTRSYARKQALLQNMLEEHVALQLIAQNHAAVAQIQAIQQSLLNGFAQQEEGAQQEDVAEIQQEDVAEIQQEDVAEIQQEDVAEIQQEDVAEIQQEDVAEIQQPVAAAPIQPVAAVPVEEMRTLLIHIKQCFNQFKSKVLSRFDEFKPFLHGFQVEENLVQMEEEDLQVEGNIALDVIADQIEENFKKFEVEMGNKLDKVLVEFKKI*