Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042370 | Msa0042380 | 0.856494 | 3.097204e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAAACAGTGGAAGAATT+TGG | 0.195554 | 1_1:-73209919 | Msa0042380:five_prime_UTR |
| AGGAGAAATCAATTCATTTC+AGG | 0.203327 | 1_1:+73208940 | None:intergenic |
| ATTCAGACGACGATGAAATT+AGG | 0.205568 | 1_1:+73209994 | None:intergenic |
| GCCGTAGAAACGTTTGTTTC+TGG | 0.215518 | 1_1:-73209777 | Msa0042380:five_prime_UTR |
| GTTTCAAGCTCACCAGGTTT+GGG | 0.228818 | 1_1:-73209889 | Msa0042380:five_prime_UTR |
| CAAATATCAGATTGTGAAAA+TGG | 0.230622 | 1_1:-73209351 | Msa0042380:intron |
| AGTGGAAGAATTTGGGTTTC+TGG | 0.247864 | 1_1:-73209911 | Msa0042380:five_prime_UTR |
| TTTCAGGGACTTGTGATTCT+TGG | 0.251797 | 1_1:+73208956 | None:intergenic |
| GGTTTCAAGCTCACCAGGTT+TGG | 0.283072 | 1_1:-73209890 | Msa0042380:five_prime_UTR |
| GGGAAATTGGGGAAGGAAAA+TGG | 0.308505 | 1_1:-73209676 | Msa0042380:five_prime_UTR |
| GTTGCTGCGGTTGAAATTAA+AGG | 0.310509 | 1_1:+73210050 | None:intergenic |
| CGTGATGGCAGGCTTTGATT+TGG | 0.337922 | 1_1:-73205695 | Msa0042380:exon |
| GTTAAACAGTGGAAGAATTT+GGG | 0.341769 | 1_1:-73209918 | Msa0042380:five_prime_UTR |
| GGACCAATTGGCAATTGGTT+TGG | 0.342208 | 1_1:-73206477 | Msa0042380:CDS |
| ATCACGAGGCCCTCCATCTA+TGG | 0.348851 | 1_1:+73205712 | None:intergenic |
| TGTTGTTGAGTTGGGAAATT+GGG | 0.355972 | 1_1:-73209688 | Msa0042380:five_prime_UTR |
| TTCAGACGACGATGAAATTA+GGG | 0.358324 | 1_1:+73209995 | None:intergenic |
| TTGTTGTTGAGTTGGGAAAT+TGG | 0.360942 | 1_1:-73209689 | Msa0042380:five_prime_UTR |
| AACTCATCAGTTGAGTTCAT+TGG | 0.366264 | 1_1:+73205650 | None:intergenic |
| TCTGGAGGCGGAGAAGGATT+TGG | 0.370838 | 1_1:-73209759 | Msa0042380:five_prime_UTR |
| TAATCATGTTTATTTAGATC+TGG | 0.404413 | 1_1:-73209617 | Msa0042380:intron |
| TACACACTCTCTGCCATAGA+TGG | 0.415933 | 1_1:-73205725 | Msa0042380:CDS |
| GGAGAAATCAATTCATTTCA+GGG | 0.419709 | 1_1:+73208941 | None:intergenic |
| TTTGAGGAGGAATGAGGTGT+TGG | 0.421348 | 1_1:-73209726 | Msa0042380:five_prime_UTR |
| GATTATATCAAGAAAGTTGT+TGG | 0.436019 | 1_1:-73206306 | Msa0042380:intron |
| TATATGGACCAATTGGCAAT+TGG | 0.438213 | 1_1:-73206482 | Msa0042380:CDS |
| ACTAAAGATGAAGAGGATAT+AGG | 0.440064 | 1_1:+73205508 | None:intergenic |
| CAATTCTTATATGGACCAAT+TGG | 0.445211 | 1_1:-73206489 | Msa0042380:CDS |
| ATTTGGTACGCCGGAGTTTG+AGG | 0.455156 | 1_1:-73209742 | Msa0042380:five_prime_UTR |
| TTGAGGAGGAATGAGGTGTT+GGG | 0.459338 | 1_1:-73209725 | Msa0042380:five_prime_UTR |
| TTTCTGGTTTCAAGCTCACC+AGG | 0.463132 | 1_1:-73209895 | Msa0042380:five_prime_UTR |
| TATCCAAACCAATTGCCAAT+TGG | 0.474037 | 1_1:+73206474 | None:intergenic |
| GGAATGAGGTGTTGGGAGGA+CGG | 0.474670 | 1_1:-73209718 | Msa0042380:five_prime_UTR |
| TTCAAAGACTTGATTGAAGT+GGG | 0.482463 | 1_1:-73209857 | Msa0042380:five_prime_UTR |
| GGAATATGCTGCAATGCTAC+AGG | 0.486166 | 1_1:+73209815 | None:intergenic |
| TTTGTTTCTGGAGGCGGAGA+AGG | 0.486686 | 1_1:-73209765 | Msa0042380:five_prime_UTR |
| TCCAGAAACAAACGTTTCTA+CGG | 0.488609 | 1_1:+73209776 | None:intergenic |
| TTTCTCCTCAATGCATAAGA+AGG | 0.506311 | 1_1:-73208925 | Msa0042380:intron |
| GATTTGGAGACTTGACTGAC+TGG | 0.506827 | 1_1:-73205679 | Msa0042380:three_prime_UTR |
| GAAACGTTTGTTTCTGGAGG+CGG | 0.510991 | 1_1:-73209771 | Msa0042380:five_prime_UTR |
| CACAAGCACTAAAGATGAAG+AGG | 0.519093 | 1_1:+73205501 | None:intergenic |
| TTTCAAGCTCACCAGGTTTG+GGG | 0.526338 | 1_1:-73209888 | Msa0042380:five_prime_UTR |
| ATGGAGGGCCTCGTGATGGC+AGG | 0.531397 | 1_1:-73205706 | Msa0042380:CDS |
| TTTCAAAGACTTGATTGAAG+TGG | 0.538292 | 1_1:-73209858 | Msa0042380:five_prime_UTR |
| TTCATCGAATTAGAAGAAGA+TGG | 0.542829 | 1_1:+73209945 | None:intergenic |
| TTGAGTTGGGAAATTGGGGA+AGG | 0.548020 | 1_1:-73209683 | Msa0042380:five_prime_UTR |
| TCTCACCTTCTTATGCATTG+AGG | 0.551757 | 1_1:+73208920 | None:intergenic |
| CGGTGGTGTTTCTCTAGTGT+GGG | 0.552235 | 1_1:+73210105 | None:intergenic |
| ATTGGTCCATATAAGAATTG+TGG | 0.557474 | 1_1:+73206492 | None:intergenic |
| GTAGAAACGTTTGTTTCTGG+AGG | 0.557815 | 1_1:-73209774 | Msa0042380:five_prime_UTR |
| TCGGTGGTGTTTCTCTAGTG+TGG | 0.558383 | 1_1:+73210104 | None:intergenic |
| GGGTAATTCTCACAAGTACA+TGG | 0.560130 | 1_1:-73206343 | Msa0042380:CDS |
| TTGAAATTAAAGGAAATCGC+TGG | 0.562430 | 1_1:+73210060 | None:intergenic |
| GAAAGCAAAATCCCCAAACC+TGG | 0.562509 | 1_1:+73209877 | None:intergenic |
| TTTCTGATCGGCAGTATCAT+CGG | 0.565682 | 1_1:+73210085 | None:intergenic |
| TACGGCACATTCGAACATCA+AGG | 0.573809 | 1_1:+73209794 | None:intergenic |
| CACTCTCTGCCATAGATGGA+GGG | 0.577060 | 1_1:-73205721 | Msa0042380:CDS |
| AGGAGGAATGAGGTGTTGGG+AGG | 0.577673 | 1_1:-73209722 | Msa0042380:five_prime_UTR |
| CCTCATTCCTCCTCAAACTC+CGG | 0.581203 | 1_1:+73209732 | None:intergenic |
| GAGAAGCACTTGTATCAAGT+GGG | 0.584100 | 1_1:-73205621 | Msa0042380:three_prime_UTR |
| CCGGAGTTTGAGGAGGAATG+AGG | 0.587129 | 1_1:-73209732 | Msa0042380:five_prime_UTR |
| AGAGAAGCACTTGTATCAAG+TGG | 0.594141 | 1_1:-73205622 | Msa0042380:three_prime_UTR |
| AAATTGCTAAGAGAATCAAT+AGG | 0.600008 | 1_1:-73209326 | Msa0042380:five_prime_UTR |
| ATGTGAGGTGAAGTGCTTGA+CGG | 0.600122 | 1_1:-73205765 | Msa0042380:CDS |
| CGATGAACGTTGTTAAACAG+TGG | 0.600469 | 1_1:-73209929 | Msa0042380:five_prime_UTR |
| ATAGATGGAGGGCCTCGTGA+TGG | 0.603906 | 1_1:-73205710 | Msa0042380:CDS |
| TGGTACGCCGGAGTTTGAGG+AGG | 0.608306 | 1_1:-73209739 | Msa0042380:five_prime_UTR |
| CACAAGTCTTGAAGAATGTG+AGG | 0.621403 | 1_1:-73205780 | Msa0042380:CDS |
| ACACTCTCTGCCATAGATGG+AGG | 0.622411 | 1_1:-73205722 | Msa0042380:CDS |
| GTTGTTGAGTTGGGAAATTG+GGG | 0.635728 | 1_1:-73209687 | Msa0042380:five_prime_UTR |
| AAATCGCTGGAGTTTCTGAT+CGG | 0.637932 | 1_1:+73210073 | None:intergenic |
| TGCAAAGTTCGATTGAGACA+TGG | 0.637993 | 1_1:-73208981 | Msa0042380:intron |
| AAAATCAAATGTTGTTGCTG+CGG | 0.655590 | 1_1:+73210037 | None:intergenic |
| AATCAAAGCCTGCCATCACG+AGG | 0.667591 | 1_1:+73205698 | None:intergenic |
| CGGAGAAGGATTTGGTACGC+CGG | 0.674775 | 1_1:-73209751 | Msa0042380:five_prime_UTR |
| CTGATCGGCAGTATCATCGG+TGG | 0.676982 | 1_1:+73210088 | None:intergenic |
| GGAAAATGGCTATATGAGTG+CGG | 0.686557 | 1_1:-73209662 | Msa0042380:five_prime_UTR |
| AGAAGCACTTGTATCAAGTG+GGG | 0.702083 | 1_1:-73205620 | Msa0042380:three_prime_UTR |
| AAATGGCTATATGAGTGCGG+CGG | 0.712414 | 1_1:-73209659 | Msa0042380:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATTTACTTATGAATT+GGG | - | chr1_1:73206138-73206157 | Msa0042380:intron | 10.0% |
| !!! | TTTCATTTTTTGTATATTAT+TGG | - | chr1_1:73208067-73208086 | Msa0042380:intron | 10.0% |
| !! | GTTATAATTTACTTATGAAT+TGG | - | chr1_1:73206137-73206156 | Msa0042380:intron | 15.0% |
| !!! | TTTTTGGTAAAAAAAATCAT+AGG | + | chr1_1:73206350-73206369 | None:intergenic | 15.0% |
| !!! | TTTTTATTTATTTGTCTATG+TGG | - | chr1_1:73206525-73206544 | Msa0042380:intron | 15.0% |
| !! | AACATATGGAATTTATAATA+TGG | - | chr1_1:73206895-73206914 | Msa0042380:intron | 15.0% |
| !!! | TAGTAATTTAGTTTGAATTT+TGG | - | chr1_1:73207022-73207041 | Msa0042380:intron | 15.0% |
| !! | TTAATGCATTAAAAAAAGAA+GGG | + | chr1_1:73207346-73207365 | None:intergenic | 15.0% |
| !! | TCATAATTTATATAAGATGA+AGG | - | chr1_1:73208304-73208323 | Msa0042380:intron | 15.0% |
| !!! | ATTTCATGTTTGATAATAAT+GGG | + | chr1_1:73208923-73208942 | None:intergenic | 15.0% |
| !!! | TATTTCATGTTTGATAATAA+TGG | + | chr1_1:73208924-73208943 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGCTTATTATAAA+TGG | - | chr1_1:73209527-73209546 | Msa0042380:intron | 15.0% |
| !!! | AGTTTTTTTTTTTTAGTAAG+TGG | - | chr1_1:73210047-73210066 | Msa0042380:five_prime_UTR | 15.0% |
| !!! | GTTTTTTTTTTTTAGTAAGT+GGG | - | chr1_1:73210048-73210067 | Msa0042380:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTTTAGTAAGTG+GGG | - | chr1_1:73210049-73210068 | Msa0042380:five_prime_UTR | 15.0% |
| !! | TAATCATGTTTATTTAGATC+TGG | - | chr1_1:73206022-73206041 | Msa0042380:intron | 20.0% |
| !!! | TTTGTAGCTACAATTTTTTA+CGG | - | chr1_1:73206078-73206097 | Msa0042380:intron | 20.0% |
| !! | ATTCAAATTAATTAGAACCA+GGG | + | chr1_1:73206252-73206271 | None:intergenic | 20.0% |
| !! | AATTCAAATTAATTAGAACC+AGG | + | chr1_1:73206253-73206272 | None:intergenic | 20.0% |
| !!! | TTAATTTGAATTTGTTGTTG+TGG | - | chr1_1:73206261-73206280 | Msa0042380:intron | 20.0% |
| !! | TTCAGCACAAAAAAAATTAT+TGG | + | chr1_1:73206581-73206600 | None:intergenic | 20.0% |
| !!! | ACTTCTAATTGTTCTTTTAT+TGG | - | chr1_1:73206620-73206639 | Msa0042380:intron | 20.0% |
| !!! | CTTCTAATTGTTCTTTTATT+GGG | - | chr1_1:73206621-73206640 | Msa0042380:intron | 20.0% |
| !!! | TTCTAATTGTTCTTTTATTG+GGG | - | chr1_1:73206622-73206641 | Msa0042380:intron | 20.0% |
| !!! | ATTAGTTTATTCTATAGAGA+AGG | + | chr1_1:73207064-73207083 | None:intergenic | 20.0% |
| !! | AAGATATTTACTAATGCAAA+GGG | + | chr1_1:73207309-73207328 | None:intergenic | 20.0% |
| !! | GTTAATGCATTAAAAAAAGA+AGG | + | chr1_1:73207347-73207366 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTTTGTTAGTCT+TGG | - | chr1_1:73207486-73207505 | Msa0042380:intron | 20.0% |
| !! | AAATATGAAAATATGAACGT+TGG | + | chr1_1:73207811-73207830 | None:intergenic | 20.0% |
| !! | ATAAAATACCAGAAATTAGA+AGG | + | chr1_1:73207835-73207854 | None:intergenic | 20.0% |
| !! | TTAACTGATCATGAAAATAA+AGG | + | chr1_1:73208426-73208445 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTGATAATAATG+GGG | + | chr1_1:73208922-73208941 | None:intergenic | 20.0% |
| !!! | AATATCTTTTTTTTAAGAGC+AGG | - | chr1_1:73209219-73209238 | Msa0042380:intron | 20.0% |
| !!! | ATATCTTTTTTTTAAGAGCA+GGG | - | chr1_1:73209220-73209239 | Msa0042380:intron | 20.0% |
| !!! | TTTAATTTTAGACTCATTGT+AGG | - | chr1_1:73209274-73209293 | Msa0042380:intron | 20.0% |
| !!! | TTAATTTTAGACTCATTGTA+GGG | - | chr1_1:73209275-73209294 | Msa0042380:five_prime_UTR | 20.0% |
| !!! | AATTTTATAAAGCATTCAAG+AGG | + | chr1_1:73209697-73209716 | None:intergenic | 20.0% |
| !!! | CAACAACATTTGATTTTGAT+TGG | - | chr1_1:73205608-73205627 | Msa0042380:three_prime_UTR | 25.0% |
| ! | ATACTTGGTTATGATATTGT+TGG | - | chr1_1:73206173-73206192 | Msa0042380:intron | 25.0% |
| ! | CAAATATCAGATTGTGAAAA+TGG | - | chr1_1:73206288-73206307 | Msa0042380:intron | 25.0% |
| ! | AAATTGCTAAGAGAATCAAT+AGG | - | chr1_1:73206313-73206332 | Msa0042380:CDS | 25.0% |
| !!! | TGTAACTTTTTGCTAGTTTT+TGG | + | chr1_1:73206366-73206385 | None:intergenic | 25.0% |
| !!! | TTTTGTTTCTCAATCATTGT+AGG | - | chr1_1:73206392-73206411 | Msa0042380:intron | 25.0% |
| ! | TTTGTACAATTATGATGTCT+TGG | - | chr1_1:73206754-73206773 | Msa0042380:intron | 25.0% |
| ! | TAACAAAATCTTTCCCAATT+TGG | + | chr1_1:73206964-73206983 | None:intergenic | 25.0% |
| !!! | AGTGAATTTTAAGTGTAAGT+TGG | - | chr1_1:73207129-73207148 | Msa0042380:intron | 25.0% |
| ! | CAAGATATTTACTAATGCAA+AGG | + | chr1_1:73207310-73207329 | None:intergenic | 25.0% |
| ! | ATGAAATTTGACTACTTAAG+TGG | + | chr1_1:73207392-73207411 | None:intergenic | 25.0% |
| ! | GCTTTATAGAACAAAGAATT+TGG | + | chr1_1:73207545-73207564 | None:intergenic | 25.0% |
| ! | GAAAGAAAGACTAATAAAAG+GGG | + | chr1_1:73207613-73207632 | None:intergenic | 25.0% |
| ! | GGAAAGAAAGACTAATAAAA+GGG | + | chr1_1:73207614-73207633 | None:intergenic | 25.0% |
| ! | TGGAAAGAAAGACTAATAAA+AGG | + | chr1_1:73207615-73207634 | None:intergenic | 25.0% |
| ! | GATGAAATTCAAAATGATAG+AGG | + | chr1_1:73207714-73207733 | None:intergenic | 25.0% |
| !! | CATATTTTCCTTCTAATTTC+TGG | - | chr1_1:73207824-73207843 | Msa0042380:intron | 25.0% |
| ! | AGAGCAAAAATATGAACATT+TGG | + | chr1_1:73207961-73207980 | None:intergenic | 25.0% |
| ! | TCCTATATAATGTTAACTCT+GGG | + | chr1_1:73208330-73208349 | None:intergenic | 25.0% |
| ! | ATCCTATATAATGTTAACTC+TGG | + | chr1_1:73208331-73208350 | None:intergenic | 25.0% |
| !! | ACATATCTCTACTTCTATTT+TGG | - | chr1_1:73208533-73208552 | Msa0042380:intron | 25.0% |
| !! | CATATCTCTACTTCTATTTT+GGG | - | chr1_1:73208534-73208553 | Msa0042380:intron | 25.0% |
| ! | TGTATGCTAAAATTCAGTTT+AGG | - | chr1_1:73208812-73208831 | Msa0042380:intron | 25.0% |
| ! | TAAAAATGATAACCTTGTGA+CGG | - | chr1_1:73208993-73209012 | Msa0042380:intron | 25.0% |
| ! | AGTAAACGATATGATTATTG+AGG | - | chr1_1:73209078-73209097 | Msa0042380:intron | 25.0% |
| !!! | ATATCATCACTTTTGTTTGT+AGG | - | chr1_1:73209117-73209136 | Msa0042380:intron | 25.0% |
| !! | ATTTTGCCACAATTCTTATA+TGG | - | chr1_1:73209141-73209160 | Msa0042380:intron | 25.0% |
| !! | AGGGTATAAGTTTTTCTTAT+AGG | - | chr1_1:73209239-73209258 | Msa0042380:intron | 25.0% |
| !! | TAATTTTAGACTCATTGTAG+GGG | - | chr1_1:73209276-73209295 | Msa0042380:five_prime_UTR | 25.0% |
| ! | GATTATATCAAGAAAGTTGT+TGG | - | chr1_1:73209333-73209352 | Msa0042380:five_prime_UTR | 25.0% |
| !!! | CAGGTTTCTAAAATTAAGTA+AGG | - | chr1_1:73209794-73209813 | Msa0042380:five_prime_UTR | 25.0% |
| TTGAAATTAAAGGAAATCGC+TGG | + | chr1_1:73205582-73205601 | None:intergenic | 30.0% | |
| AAAATCAAATGTTGTTGCTG+CGG | + | chr1_1:73205605-73205624 | None:intergenic | 30.0% | |
| TTCATCGAATTAGAAGAAGA+TGG | + | chr1_1:73205697-73205716 | None:intergenic | 30.0% | |
| TGTTAAACAGTGGAAGAATT+TGG | - | chr1_1:73205720-73205739 | Msa0042380:CDS | 30.0% | |
| GTTAAACAGTGGAAGAATTT+GGG | - | chr1_1:73205721-73205740 | Msa0042380:CDS | 30.0% | |
| TTTCAAAGACTTGATTGAAG+TGG | - | chr1_1:73205781-73205800 | Msa0042380:CDS | 30.0% | |
| TTCAAAGACTTGATTGAAGT+GGG | - | chr1_1:73205782-73205801 | Msa0042380:CDS | 30.0% | |
| !!! | AGCTACAATTTTTTACGGTT+TGG | - | chr1_1:73206083-73206102 | Msa0042380:intron | 30.0% |
| !!! | GGGTTTTTTGTTTTCATACT+TGG | - | chr1_1:73206158-73206177 | Msa0042380:intron | 30.0% |
| ! | TTTTGTAATCATGATTTCCC+TGG | - | chr1_1:73206232-73206251 | Msa0042380:intron | 30.0% |
| TTTAATTGCAGCTATTCATC+TGG | - | chr1_1:73206460-73206479 | Msa0042380:intron | 30.0% | |
| ACCTATCATCAAATAGATTG+AGG | - | chr1_1:73206495-73206514 | Msa0042380:CDS | 30.0% | |
| ! | ACCTCAATCTATTTGATGAT+AGG | + | chr1_1:73206499-73206518 | None:intergenic | 30.0% |
| ! | CAATTAGAAGTGCATTTCAA+AGG | + | chr1_1:73206611-73206630 | None:intergenic | 30.0% |
| ! | TAATTGTTCTTTTATTGGGG+TGG | - | chr1_1:73206625-73206644 | Msa0042380:intron | 30.0% |
| GGAGAAATCAATTCATTTCA+GGG | + | chr1_1:73206701-73206720 | None:intergenic | 30.0% | |
| AGGAGAAATCAATTCATTTC+AGG | + | chr1_1:73206702-73206721 | None:intergenic | 30.0% | |
| TTTCATTGCTACTAAGCATA+CGG | - | chr1_1:73206824-73206843 | Msa0042380:intron | 30.0% | |
| TTACTTCAGAATGCAACATA+TGG | - | chr1_1:73206881-73206900 | Msa0042380:intron | 30.0% | |
| GAGCATTTGAAAATTGTCTT+GGG | + | chr1_1:73207199-73207218 | None:intergenic | 30.0% | |
| TGAGCATTTGAAAATTGTCT+TGG | + | chr1_1:73207200-73207219 | None:intergenic | 30.0% | |
| TTAAAGATAGAGTTTGAGCA+AGG | - | chr1_1:73207438-73207457 | Msa0042380:intron | 30.0% | |
| TATCATAAGTATTTCCCGTT+AGG | - | chr1_1:73207516-73207535 | Msa0042380:intron | 30.0% | |
| ATGAATGAATGAAGGAAGAT+TGG | + | chr1_1:73207641-73207660 | None:intergenic | 30.0% | |
| TTATGCTCTTGAATGTGATA+TGG | - | chr1_1:73207851-73207870 | Msa0042380:intron | 30.0% | |
| CATATATTTCATGCTCTTGA+AGG | - | chr1_1:73207986-73208005 | Msa0042380:intron | 30.0% | |
| ! | AAATACTTTTCCAAAACCCA+TGG | + | chr1_1:73208180-73208199 | None:intergenic | 30.0% |
| TTAATCCAAGATGCAAACTA+AGG | + | chr1_1:73208250-73208269 | None:intergenic | 30.0% | |
| !! | TTAGCATCTTGTTGTTGTTT+AGG | - | chr1_1:73208604-73208623 | Msa0042380:intron | 30.0% |
| TATAATATTGTAGACCGCAA+GGG | + | chr1_1:73208658-73208677 | None:intergenic | 30.0% | |
| ATATAATATTGTAGACCGCA+AGG | + | chr1_1:73208659-73208678 | None:intergenic | 30.0% | |
| !! | TAGTGCATTTTCACTTTTCA+GGG | + | chr1_1:73208730-73208749 | None:intergenic | 30.0% |
| !! | TTAGTGCATTTTCACTTTTC+AGG | + | chr1_1:73208731-73208750 | None:intergenic | 30.0% |
| AAAAATGATAACCTTGTGAC+GGG | - | chr1_1:73208994-73209013 | Msa0042380:intron | 30.0% | |
| ATTGGTCCATATAAGAATTG+TGG | + | chr1_1:73209150-73209169 | None:intergenic | 30.0% | |
| CAATTCTTATATGGACCAAT+TGG | - | chr1_1:73209150-73209169 | Msa0042380:intron | 30.0% | |
| TCAAGAAAGTTGTTGGTATA+TGG | - | chr1_1:73209340-73209359 | Msa0042380:five_prime_UTR | 30.0% | |
| ! | TTGACCAAATTTTCTTCGTA+TGG | - | chr1_1:73209413-73209432 | Msa0042380:intron | 30.0% |
| ! | TGACCAAATTTTCTTCGTAT+GGG | - | chr1_1:73209414-73209433 | Msa0042380:intron | 30.0% |
| TATCCCATACGAAGAAAATT+TGG | + | chr1_1:73209420-73209439 | None:intergenic | 30.0% | |
| !!! | TTTATTTTAATGCCTGCAGT+TGG | - | chr1_1:73209480-73209499 | Msa0042380:intron | 30.0% |
| TTATGCATTAAGTACTAGTG+TGG | - | chr1_1:73209647-73209666 | Msa0042380:five_prime_UTR | 30.0% | |
| ! | TTATAAAGCATTCAAGAGGA+AGG | + | chr1_1:73209693-73209712 | None:intergenic | 30.0% |
| TTCAGACGACGATGAAATTA+GGG | + | chr1_1:73205647-73205666 | None:intergenic | 35.0% | |
| ATTCAGACGACGATGAAATT+AGG | + | chr1_1:73205648-73205667 | None:intergenic | 35.0% | |
| TCCAGAAACAAACGTTTCTA+CGG | + | chr1_1:73205866-73205885 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGTTGTTGAGTT+GGG | - | chr1_1:73205943-73205962 | Msa0042380:intron | 35.0% |
| !! | TTGTTGTTGAGTTGGGAAAT+TGG | - | chr1_1:73205950-73205969 | Msa0042380:intron | 35.0% |
| !! | TGTTGTTGAGTTGGGAAATT+GGG | - | chr1_1:73205951-73205970 | Msa0042380:intron | 35.0% |
| TTTCTCAATCATTGTAGGCT+TGG | - | chr1_1:73206397-73206416 | Msa0042380:intron | 35.0% | |
| TTTCTCCTCAATGCATAAGA+AGG | - | chr1_1:73206714-73206733 | Msa0042380:intron | 35.0% | |
| TAGCAATGAAACACATGACA+AGG | + | chr1_1:73206815-73206834 | None:intergenic | 35.0% | |
| TCAACATAATGCCACCAAAT+TGG | - | chr1_1:73206947-73206966 | Msa0042380:intron | 35.0% | |
| CAACATAATGCCACCAAATT+GGG | - | chr1_1:73206948-73206967 | Msa0042380:intron | 35.0% | |
| CAAAATCTTTCCCAATTTGG+TGG | + | chr1_1:73206961-73206980 | None:intergenic | 35.0% | |
| TGAGAGTTATGTATGCAAGT+GGG | - | chr1_1:73207257-73207276 | Msa0042380:intron | 35.0% | |
| AAAGAATTTGGCAACCTAAC+GGG | + | chr1_1:73207533-73207552 | None:intergenic | 35.0% | |
| CAAAGAATTTGGCAACCTAA+CGG | + | chr1_1:73207534-73207553 | None:intergenic | 35.0% | |
| GAATGAAGGAAGATTGGAAT+TGG | + | chr1_1:73207635-73207654 | None:intergenic | 35.0% | |
| CGATCGAAATGAATGAATGA+AGG | + | chr1_1:73207649-73207668 | None:intergenic | 35.0% | |
| !!! | GTACTCTAGTTTTTCATCGA+TGG | - | chr1_1:73207757-73207776 | Msa0042380:intron | 35.0% |
| ! | GAATGTGATATGGTCGATTT+AGG | - | chr1_1:73207861-73207880 | Msa0042380:intron | 35.0% |
| TTGTATGTAACCACATGTGT+CGG | + | chr1_1:73208043-73208062 | None:intergenic | 35.0% | |
| !! | ATTGGTGTCAGTATATGTGT+TGG | - | chr1_1:73208085-73208104 | Msa0042380:intron | 35.0% |
| GTGATGAAGCTAAACATAGT+AGG | + | chr1_1:73208154-73208173 | None:intergenic | 35.0% | |
| !! | TCTTTCCTTAGTTTGCATCT+TGG | - | chr1_1:73208242-73208261 | Msa0042380:intron | 35.0% |
| GCCCAGAGTTAACATTATAT+AGG | - | chr1_1:73208326-73208345 | Msa0042380:intron | 35.0% | |
| ! | TTCAGATATCTTTTCCCTTG+CGG | - | chr1_1:73208641-73208660 | Msa0042380:intron | 35.0% |
| !! | AGTGCATTTTCACTTTTCAG+GGG | + | chr1_1:73208729-73208748 | None:intergenic | 35.0% |
| AACTAAATCAACAGAACACG+AGG | + | chr1_1:73208790-73208809 | None:intergenic | 35.0% | |
| ! | AAGCCATGTTTCTGCAATAA+AGG | + | chr1_1:73208875-73208894 | None:intergenic | 35.0% |
| !! | TTAAAAGTATTCCCGTCACA+AGG | + | chr1_1:73209008-73209027 | None:intergenic | 35.0% |
| ! | CGGGAATACTTTTAACCAAA+AGG | - | chr1_1:73209013-73209032 | Msa0042380:intron | 35.0% |
| GATATGAAGCAACAACTAGT+CGG | + | chr1_1:73209043-73209062 | None:intergenic | 35.0% | |
| TATATGGACCAATTGGCAAT+TGG | - | chr1_1:73209157-73209176 | Msa0042380:intron | 35.0% | |
| TATCCAAACCAATTGCCAAT+TGG | + | chr1_1:73209168-73209187 | None:intergenic | 35.0% | |
| GAAGATCAACTCTATGTCTA+AGG | + | chr1_1:73209616-73209635 | None:intergenic | 35.0% | |
| AACTCATCAGTTGAGTTCAT+TGG | + | chr1_1:73209992-73210011 | None:intergenic | 35.0% | |
| TTTCTGATCGGCAGTATCAT+CGG | + | chr1_1:73205557-73205576 | None:intergenic | 40.0% | |
| AAATCGCTGGAGTTTCTGAT+CGG | + | chr1_1:73205569-73205588 | None:intergenic | 40.0% | |
| GTTGCTGCGGTTGAAATTAA+AGG | + | chr1_1:73205592-73205611 | None:intergenic | 40.0% | |
| CGATGAACGTTGTTAAACAG+TGG | - | chr1_1:73205710-73205729 | Msa0042380:CDS | 40.0% | |
| ! | AGTGGAAGAATTTGGGTTTC+TGG | - | chr1_1:73205728-73205747 | Msa0042380:CDS | 40.0% |
| !! | GTAGAAACGTTTGTTTCTGG+AGG | - | chr1_1:73205865-73205884 | Msa0042380:intron | 40.0% |
| ! | GGTTGTTGTTGTTGTTGAGT+TGG | - | chr1_1:73205942-73205961 | Msa0042380:intron | 40.0% |
| !! | GTTGTTGAGTTGGGAAATTG+GGG | - | chr1_1:73205952-73205971 | Msa0042380:intron | 40.0% |
| GGAAAATGGCTATATGAGTG+CGG | - | chr1_1:73205977-73205996 | Msa0042380:intron | 40.0% | |
| TGCAAAGTTCGATTGAGACA+TGG | - | chr1_1:73206658-73206677 | Msa0042380:intron | 40.0% | |
| TTTCAGGGACTTGTGATTCT+TGG | + | chr1_1:73206686-73206705 | None:intergenic | 40.0% | |
| TCTCACCTTCTTATGCATTG+AGG | + | chr1_1:73206722-73206741 | None:intergenic | 40.0% | |
| GTGAGAGTTATGTATGCAAG+TGG | - | chr1_1:73207256-73207275 | Msa0042380:intron | 40.0% | |
| ATTAACTTTGCCGAGAGAGA+AGG | - | chr1_1:73207361-73207380 | Msa0042380:intron | 40.0% | |
| TTCATCTCGCAATCGATCTA+AGG | - | chr1_1:73207678-73207697 | Msa0042380:intron | 40.0% | |
| ! | TTTAGCTTCATCACCTTCCA+TGG | - | chr1_1:73208160-73208179 | Msa0042380:intron | 40.0% |
| TTAGCTTCATCACCTTCCAT+GGG | - | chr1_1:73208161-73208180 | Msa0042380:intron | 40.0% | |
| ! | ACTTTTCCAAAACCCATGGA+AGG | + | chr1_1:73208176-73208195 | None:intergenic | 40.0% |
| CTTAAAAATGCGCACATCGA+TGG | + | chr1_1:73208211-73208230 | None:intergenic | 40.0% | |
| ATGAACGCCTAGAGTTAACA+CGG | - | chr1_1:73208363-73208382 | Msa0042380:intron | 40.0% | |
| TTGGGTAACTTGACATGTAG+AGG | - | chr1_1:73208552-73208571 | Msa0042380:intron | 40.0% | |
| TGGGTAACTTGACATGTAGA+GGG | - | chr1_1:73208553-73208572 | Msa0042380:intron | 40.0% | |
| TGAGCTTAAACTTCCCACAA+AGG | - | chr1_1:73208678-73208697 | Msa0042380:intron | 40.0% | |
| ! | CCATGTTTCTGCAATAAAGG+AGG | + | chr1_1:73208872-73208891 | None:intergenic | 40.0% |
| CCTCCTTTATTGCAGAAACA+TGG | - | chr1_1:73208869-73208888 | Msa0042380:intron | 40.0% | |
| GGGTAATTCTCACAAGTACA+TGG | - | chr1_1:73209296-73209315 | Msa0042380:five_prime_UTR | 40.0% | |
| TATCCAAAGATACCAACTGC+AGG | + | chr1_1:73209495-73209514 | None:intergenic | 40.0% | |
| GTTGAGACACAAGACTAAAG+TGG | + | chr1_1:73209565-73209584 | None:intergenic | 40.0% | |
| TGAAATGCACATACGCTAAC+AGG | - | chr1_1:73209775-73209794 | Msa0042380:five_prime_UTR | 40.0% | |
| CACAAGTCTTGAAGAATGTG+AGG | - | chr1_1:73209859-73209878 | Msa0042380:five_prime_UTR | 40.0% | |
| !! | AGAGAAGCACTTGTATCAAG+TGG | - | chr1_1:73210017-73210036 | Msa0042380:five_prime_UTR | 40.0% |
| !! | GAGAAGCACTTGTATCAAGT+GGG | - | chr1_1:73210018-73210037 | Msa0042380:five_prime_UTR | 40.0% |
| !! | AGAAGCACTTGTATCAAGTG+GGG | - | chr1_1:73210019-73210038 | Msa0042380:five_prime_UTR | 40.0% |
| !! | TTTCTGGTTTCAAGCTCACC+AGG | - | chr1_1:73205744-73205763 | Msa0042380:CDS | 45.0% |
| GTTTCAAGCTCACCAGGTTT+GGG | - | chr1_1:73205750-73205769 | Msa0042380:CDS | 45.0% | |
| TTTCAAGCTCACCAGGTTTG+GGG | - | chr1_1:73205751-73205770 | Msa0042380:CDS | 45.0% | |
| GAAAGCAAAATCCCCAAACC+TGG | + | chr1_1:73205765-73205784 | None:intergenic | 45.0% | |
| GGAATATGCTGCAATGCTAC+AGG | + | chr1_1:73205827-73205846 | None:intergenic | 45.0% | |
| TACGGCACATTCGAACATCA+AGG | + | chr1_1:73205848-73205867 | None:intergenic | 45.0% | |
| GCCGTAGAAACGTTTGTTTC+TGG | - | chr1_1:73205862-73205881 | Msa0042380:intron | 45.0% | |
| !! | GAAACGTTTGTTTCTGGAGG+CGG | - | chr1_1:73205868-73205887 | Msa0042380:intron | 45.0% |
| TTTGAGGAGGAATGAGGTGT+TGG | - | chr1_1:73205913-73205932 | Msa0042380:intron | 45.0% | |
| ! | TTGAGGAGGAATGAGGTGTT+GGG | - | chr1_1:73205914-73205933 | Msa0042380:intron | 45.0% |
| !! | TTGAGTTGGGAAATTGGGGA+AGG | - | chr1_1:73205956-73205975 | Msa0042380:intron | 45.0% |
| GGGAAATTGGGGAAGGAAAA+TGG | - | chr1_1:73205963-73205982 | Msa0042380:intron | 45.0% | |
| AAATGGCTATATGAGTGCGG+CGG | - | chr1_1:73205980-73205999 | Msa0042380:intron | 45.0% | |
| TGTACACTGCATGACAAGCT+TGG | + | chr1_1:73207174-73207193 | None:intergenic | 45.0% | |
| AGTGGTACATCCTTCTCTCT+CGG | + | chr1_1:73207374-73207393 | None:intergenic | 45.0% | |
| ! | TCATCACCTTCCATGGGTTT+TGG | - | chr1_1:73208167-73208186 | Msa0042380:intron | 45.0% |
| TGAACGCCTAGAGTTAACAC+GGG | - | chr1_1:73208364-73208383 | Msa0042380:intron | 45.0% | |
| AACAGACCCGTGTTAACTCT+AGG | + | chr1_1:73208373-73208392 | None:intergenic | 45.0% | |
| ACAGAACACGAGGCTTACAT+AGG | + | chr1_1:73208780-73208799 | None:intergenic | 45.0% | |
| ATGAAGCAACAACTAGTCGG+TGG | + | chr1_1:73209040-73209059 | None:intergenic | 45.0% | |
| GGACCAATTGGCAATTGGTT+TGG | - | chr1_1:73209162-73209181 | Msa0042380:intron | 45.0% | |
| ! | ATGCCTGCAGTTGGTATCTT+TGG | - | chr1_1:73209489-73209508 | Msa0042380:intron | 45.0% |
| ! | ATGTGAGGTGAAGTGCTTGA+CGG | - | chr1_1:73209874-73209893 | Msa0042380:five_prime_UTR | 45.0% |
| TACACACTCTCTGCCATAGA+TGG | - | chr1_1:73209914-73209933 | Msa0042380:five_prime_UTR | 45.0% | |
| GATTTGGAGACTTGACTGAC+TGG | - | chr1_1:73209960-73209979 | Msa0042380:five_prime_UTR | 45.0% | |
| CGGTGGTGTTTCTCTAGTGT+GGG | + | chr1_1:73205537-73205556 | None:intergenic | 50.0% | |
| TCGGTGGTGTTTCTCTAGTG+TGG | + | chr1_1:73205538-73205557 | None:intergenic | 50.0% | |
| GGTTTCAAGCTCACCAGGTT+TGG | - | chr1_1:73205749-73205768 | Msa0042380:CDS | 50.0% | |
| !! | TTTGTTTCTGGAGGCGGAGA+AGG | - | chr1_1:73205874-73205893 | Msa0042380:intron | 50.0% |
| ATTTGGTACGCCGGAGTTTG+AGG | - | chr1_1:73205897-73205916 | Msa0042380:intron | 50.0% | |
| CCTCATTCCTCCTCAAACTC+CGG | + | chr1_1:73205910-73205929 | None:intergenic | 50.0% | |
| ATGTCGAACACCGACACATG+TGG | - | chr1_1:73208030-73208049 | Msa0042380:intron | 50.0% | |
| AACTTCCCACAAAGGCTGCA+AGG | - | chr1_1:73208686-73208705 | Msa0042380:intron | 50.0% | |
| TCCATCCTTGCAGCCTTTGT+GGG | + | chr1_1:73208694-73208713 | None:intergenic | 50.0% | |
| ! | CAACTAGTCGGTGGACCTTT+TGG | + | chr1_1:73209031-73209050 | None:intergenic | 50.0% |
| TGCCTACGTTGTTGCAGTTC+AGG | - | chr1_1:73209823-73209842 | Msa0042380:five_prime_UTR | 50.0% | |
| GTCCTGAACTGCAACAACGT+AGG | + | chr1_1:73209828-73209847 | None:intergenic | 50.0% | |
| ACACTCTCTGCCATAGATGG+AGG | - | chr1_1:73209917-73209936 | Msa0042380:five_prime_UTR | 50.0% | |
| CACTCTCTGCCATAGATGGA+GGG | - | chr1_1:73209918-73209937 | Msa0042380:five_prime_UTR | 50.0% | |
| AATCAAAGCCTGCCATCACG+AGG | + | chr1_1:73209944-73209963 | None:intergenic | 50.0% | |
| ! | CGTGATGGCAGGCTTTGATT+TGG | - | chr1_1:73209944-73209963 | Msa0042380:five_prime_UTR | 50.0% |
| CTGATCGGCAGTATCATCGG+TGG | + | chr1_1:73205554-73205573 | None:intergenic | 55.0% | |
| TCTGGAGGCGGAGAAGGATT+TGG | - | chr1_1:73205880-73205899 | Msa0042380:intron | 55.0% | |
| ! | CGGAGAAGGATTTGGTACGC+CGG | - | chr1_1:73205888-73205907 | Msa0042380:intron | 55.0% |
| CCGGAGTTTGAGGAGGAATG+AGG | - | chr1_1:73205907-73205926 | Msa0042380:intron | 55.0% | |
| !! | AGGAGGAATGAGGTGTTGGG+AGG | - | chr1_1:73205917-73205936 | Msa0042380:intron | 55.0% |
| !! | GGAATGAGGTGTTGGGAGGA+CGG | - | chr1_1:73205921-73205940 | Msa0042380:intron | 55.0% |
| ! | CATGCTCTTGAAGGTGTGCC+CGG | - | chr1_1:73207995-73208014 | Msa0042380:intron | 55.0% |
| TCGACATCGATACGTGTCGC+CGG | + | chr1_1:73208017-73208036 | None:intergenic | 55.0% | |
| TCCCACAAAGGCTGCAAGGA+TGG | - | chr1_1:73208690-73208709 | Msa0042380:intron | 55.0% | |
| CTCCATCCTTGCAGCCTTTG+TGG | + | chr1_1:73208695-73208714 | None:intergenic | 55.0% | |
| CAAAGGCTGCAAGGATGGAG+TGG | - | chr1_1:73208695-73208714 | Msa0042380:intron | 55.0% | |
| ATCACGAGGCCCTCCATCTA+TGG | + | chr1_1:73209930-73209949 | None:intergenic | 55.0% | |
| ATAGATGGAGGGCCTCGTGA+TGG | - | chr1_1:73209929-73209948 | Msa0042380:five_prime_UTR | 55.0% | |
| TGGTACGCCGGAGTTTGAGG+AGG | - | chr1_1:73205900-73205919 | Msa0042380:intron | 60.0% | |
| CGACATCGATACGTGTCGCC+GGG | + | chr1_1:73208016-73208035 | None:intergenic | 60.0% | |
| AGGCTGCAAGGATGGAGTGG+TGG | - | chr1_1:73208698-73208717 | Msa0042380:intron | 60.0% | |
| CTGCAAGGATGGAGTGGTGG+TGG | - | chr1_1:73208701-73208720 | Msa0042380:intron | 60.0% | |
| ATGGAGGGCCTCGTGATGGC+AGG | - | chr1_1:73209933-73209952 | Msa0042380:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 73205511 | 73210150 | 73205511 | ID=Msa0042380;Name=Msa0042380 |
| chr1_1 | mRNA | 73205511 | 73210150 | 73205511 | ID=Msa0042380-mRNA-1;Parent=Msa0042380;Name=Msa0042380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=681|0.6|0.83|1|0.4|0.5|6|189|84 |
| chr1_1 | exon | 73205511 | 73205821 | 73205511 | ID=Msa0042380-mRNA-1:exon:24476;Parent=Msa0042380-mRNA-1 |
| chr1_1 | exon | 73206307 | 73206365 | 73206307 | ID=Msa0042380-mRNA-1:exon:24475;Parent=Msa0042380-mRNA-1 |
| chr1_1 | exon | 73206461 | 73206522 | 73206461 | ID=Msa0042380-mRNA-1:exon:24474;Parent=Msa0042380-mRNA-1 |
| chr1_1 | exon | 73208926 | 73208996 | 73208926 | ID=Msa0042380-mRNA-1:exon:24473;Parent=Msa0042380-mRNA-1 |
| chr1_1 | exon | 73209275 | 73209363 | 73209275 | ID=Msa0042380-mRNA-1:exon:24472;Parent=Msa0042380-mRNA-1 |
| chr1_1 | exon | 73209618 | 73210150 | 73209618 | ID=Msa0042380-mRNA-1:exon:24471;Parent=Msa0042380-mRNA-1 |
| chr1_1 | five_prime_UTR | 73209618 | 73210150 | 73209618 | ID=Msa0042380-mRNA-1:five_prime_utr;Parent=Msa0042380-mRNA-1 |
| chr1_1 | five_prime_UTR | 73209275 | 73209363 | 73209275 | ID=Msa0042380-mRNA-1:five_prime_utr;Parent=Msa0042380-mRNA-1 |
| chr1_1 | five_prime_UTR | 73208938 | 73208996 | 73208938 | ID=Msa0042380-mRNA-1:five_prime_utr;Parent=Msa0042380-mRNA-1 |
| chr1_1 | CDS | 73208926 | 73208937 | 73208926 | ID=Msa0042380-mRNA-1:cds;Parent=Msa0042380-mRNA-1 |
| chr1_1 | CDS | 73206461 | 73206522 | 73206461 | ID=Msa0042380-mRNA-1:cds;Parent=Msa0042380-mRNA-1 |
| chr1_1 | CDS | 73206307 | 73206365 | 73206307 | ID=Msa0042380-mRNA-1:cds;Parent=Msa0042380-mRNA-1 |
| chr1_1 | CDS | 73205700 | 73205821 | 73205700 | ID=Msa0042380-mRNA-1:cds;Parent=Msa0042380-mRNA-1 |
| chr1_1 | three_prime_UTR | 73205511 | 73205699 | 73205511 | ID=Msa0042380-mRNA-1:three_prime_utr;Parent=Msa0042380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
