AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCATGTTTGATAATAA+TGG 0.195517 1_1:-73203715 None:intergenic
TGTTAAACAGTGGAAGAATT+TGG 0.195554 1_1:+73200514 Msa0042370:five_prime_UTR
AGGAGAAATCAATTCATTTC+AGG 0.203327 1_1:-73201493 None:intergenic
ATTCAGACGACGATGAAATT+AGG 0.205568 1_1:-73200439 None:intergenic
GTTTCAAGCTCACCAGGTTT+GGG 0.228818 1_1:+73200544 Msa0042370:five_prime_UTR
CAAATATCAGATTGTGAAAA+TGG 0.230622 1_1:+73201082 Msa0042370:intron
AGTGGAAGAATTTGGGTTTC+TGG 0.247864 1_1:+73200522 Msa0042370:five_prime_UTR
TTTCAGGGACTTGTGATTCT+TGG 0.251797 1_1:-73201477 None:intergenic
ATTTCATGTTTGATAATAAT+GGG 0.261395 1_1:-73203714 None:intergenic
GTTGCTGCGGTCGAAATTAA+AGG 0.275625 1_1:-73200383 None:intergenic
GGTTTCAAGCTCACCAGGTT+TGG 0.283072 1_1:+73200543 Msa0042370:five_prime_UTR
GGGAAATTGGGGAAGGAAAA+TGG 0.308505 1_1:+73200757 Msa0042370:five_prime_UTR
CTCCATCCTTGCAGCCTTTG+TGG 0.312588 1_1:-73203486 None:intergenic
CGTGATGGCAGGCTTTGATT+TGG 0.337922 1_1:+73204738 Msa0042370:exon
GTTAAACAGTGGAAGAATTT+GGG 0.341769 1_1:+73200515 Msa0042370:five_prime_UTR
GGACCAATTGGCAATTGGTT+TGG 0.342208 1_1:+73203956 Msa0042370:CDS
ATCACGAGGCCCTCCATCTA+TGG 0.348851 1_1:-73204721 None:intergenic
TGTTGTTGAGTTGGGAAATT+GGG 0.355972 1_1:+73200745 Msa0042370:five_prime_UTR
TTCAGACGACGATGAAATTA+GGG 0.358324 1_1:-73200438 None:intergenic
TTGTTGTTGAGTTGGGAAAT+TGG 0.360942 1_1:+73200744 Msa0042370:five_prime_UTR
AGCTCATCAGTTGAGTTCAT+TGG 0.369060 1_1:-73204783 None:intergenic
TCCATCCTTGCAGCCTTTGT+GGG 0.370732 1_1:-73203485 None:intergenic
TTTGGAGGCGGAGAAGGATT+TGG 0.370838 1_1:+73200674 Msa0042370:five_prime_UTR
TAATCATGTTTATTTAGATC+TGG 0.404413 1_1:+73200816 Msa0042370:five_prime_UTR
TACACACTCTCTGCCATAGA+TGG 0.415933 1_1:+73204708 Msa0042370:CDS
GGAGAAATCAATTCATTTCA+GGG 0.419709 1_1:-73201492 None:intergenic
TTTGAGGAGGAATGAGGTGT+TGG 0.421348 1_1:+73200707 Msa0042370:five_prime_UTR
GATTATATCAAGAAAGTTGT+TGG 0.436019 1_1:+73204127 Msa0042370:CDS
TATATGGACCAATTGGCAAT+TGG 0.438213 1_1:+73203951 Msa0042370:exon
ACTAAAGATGAAGAGGATAT+AGG 0.440064 1_1:-73204923 None:intergenic
CAATTCTTATATGGACCAAT+TGG 0.445211 1_1:+73203944 Msa0042370:exon
ATTTGGTACGCCGGAGTTTG+AGG 0.455156 1_1:+73200691 Msa0042370:five_prime_UTR
TTGAGGAGGAATGAGGTGTT+GGG 0.459338 1_1:+73200708 Msa0042370:five_prime_UTR
TTTCTGGTTTCAAGCTCACC+AGG 0.463132 1_1:+73200538 Msa0042370:five_prime_UTR
TATCCAAACCAATTGCCAAT+TGG 0.474037 1_1:-73203959 None:intergenic
GGAATGAGGTGTTGGGAGGA+CGG 0.474670 1_1:+73200715 Msa0042370:five_prime_UTR
TCCCACAAAGGCTGCAAGGA+TGG 0.481883 1_1:+73203484 Msa0042370:five_prime_UTR
TTCAAAGACTTGATTGAAGT+GGG 0.482463 1_1:+73200576 Msa0042370:five_prime_UTR
GGAATATGCTGCAATGCTAC+AGG 0.486166 1_1:-73200618 None:intergenic
TTTCTCCTCAATGCATAAGA+AGG 0.506311 1_1:+73201508 Msa0042370:five_prime_UTR
GATTTGGAGACTTGACTGAC+TGG 0.506827 1_1:+73204754 Msa0042370:exon
CACAAGCACTAAAGATGAAG+AGG 0.519093 1_1:-73204930 None:intergenic
CCTCCTTTATTGCAGAAACA+TGG 0.520516 1_1:+73203663 Msa0042370:intron
TTTCAAGCTCACCAGGTTTG+GGG 0.526338 1_1:+73200545 Msa0042370:five_prime_UTR
ATGGAGGGCCTCGTGATGGC+AGG 0.531397 1_1:+73204727 Msa0042370:CDS
TTTCAAAGACTTGATTGAAG+TGG 0.538292 1_1:+73200575 Msa0042370:five_prime_UTR
TTGAGTTGGGAAATTGGGGA+AGG 0.548020 1_1:+73200750 Msa0042370:five_prime_UTR
TCTCACCTTCTTATGCATTG+AGG 0.551757 1_1:-73201513 None:intergenic
CGGTGGTGTTTCTCTAGTGT+GGG 0.552235 1_1:-73200328 None:intergenic
AACTTCCCACAAAGGCTGCA+AGG 0.555903 1_1:+73203480 Msa0042370:five_prime_UTR
ATTGGTCCATATAAGAATTG+TGG 0.557474 1_1:-73203941 None:intergenic
TCGGTGGTGTTTCTCTAGTG+TGG 0.558383 1_1:-73200329 None:intergenic
GGGTAATTCTCACAAGTACA+TGG 0.560130 1_1:+73204090 Msa0042370:CDS
AAAATTAAATGTTGTTGCTG+CGG 0.560392 1_1:-73200396 None:intergenic
TTTCATGTTTGATAATAATG+GGG 0.561740 1_1:-73203713 None:intergenic
GAAAGCAAAATCCCCAAACC+TGG 0.562509 1_1:-73200556 None:intergenic
TTTCTGATCGGCAGTATCGT+CGG 0.564268 1_1:-73200348 None:intergenic
TACGGCACATTCGAACATCA+AGG 0.573809 1_1:-73200639 None:intergenic
TCGAAATTAAAGGAAATCGC+TGG 0.576813 1_1:-73200373 None:intergenic
CACTCTCTGCCATAGATGGA+GGG 0.577060 1_1:+73204712 Msa0042370:CDS
CTGCAAGGATGGAGTGGTGG+TGG 0.577229 1_1:+73203495 Msa0042370:five_prime_UTR
AGGAGGAATGAGGTGTTGGG+AGG 0.577673 1_1:+73200711 Msa0042370:five_prime_UTR
CCTCATTCCTCCTCAAACTC+CGG 0.581203 1_1:-73200701 None:intergenic
ATATAATATTGTAGACCGCA+AGG 0.581652 1_1:-73203450 None:intergenic
GAGAAGCACTTGTATCAAGT+GGG 0.584100 1_1:+73204812 Msa0042370:three_prime_UTR
CCGGAGTTTGAGGAGGAATG+AGG 0.587129 1_1:+73200701 Msa0042370:five_prime_UTR
TATAATATTGTAGACCGCAA+GGG 0.590272 1_1:-73203449 None:intergenic
AGAGAAGCACTTGTATCAAG+TGG 0.594141 1_1:+73204811 Msa0042370:three_prime_UTR
CAAAGGCTGCAAGGATGGAG+TGG 0.597905 1_1:+73203489 Msa0042370:five_prime_UTR
AAATTGCTAAGAGAATCAAT+AGG 0.600008 1_1:+73201107 Msa0042370:five_prime_UTR
ATGTGAGGTGAAGTGCTTGA+CGG 0.600122 1_1:+73204668 Msa0042370:CDS
CGATGAACGTTGTTAAACAG+TGG 0.600469 1_1:+73200504 Msa0042370:five_prime_UTR
ATAGATGGAGGGCCTCGTGA+TGG 0.603906 1_1:+73204723 Msa0042370:CDS
TGGTACGCCGGAGTTTGAGG+AGG 0.608306 1_1:+73200694 Msa0042370:five_prime_UTR
CACAAGTCTTGAAGAATGTG+AGG 0.621403 1_1:+73204653 Msa0042370:CDS
ACACTCTCTGCCATAGATGG+AGG 0.622411 1_1:+73204711 Msa0042370:CDS
GTTGTTGAGTTGGGAAATTG+GGG 0.635728 1_1:+73200746 Msa0042370:five_prime_UTR
AAATCGCTGGAGTTTCTGAT+CGG 0.637932 1_1:-73200360 None:intergenic
TGCAAAGTTCGATTGAGACA+TGG 0.637993 1_1:+73201452 Msa0042370:intron
TGAGCTTAAACTTCCCACAA+AGG 0.646496 1_1:+73203472 Msa0042370:five_prime_UTR
AGGCTGCAAGGATGGAGTGG+TGG 0.651572 1_1:+73203492 Msa0042370:five_prime_UTR
TTCATCGAATTAGAAGAAGA+CGG 0.660956 1_1:-73200488 None:intergenic
AATCAAAGCCTGCCATCACG+AGG 0.667591 1_1:-73204735 None:intergenic
CGGAGAAGGATTTGGTACGC+CGG 0.674775 1_1:+73200682 Msa0042370:five_prime_UTR
GGAAAATGGCTATATGAGTG+CGG 0.686557 1_1:+73200771 Msa0042370:five_prime_UTR
CTGATCGGCAGTATCGTCGG+TGG 0.692194 1_1:-73200345 None:intergenic
AGAAGCACTTGTATCAAGTG+GGG 0.702083 1_1:+73204813 Msa0042370:three_prime_UTR
AAATGGCTATATGAGTGCGG+CGG 0.712414 1_1:+73200774 Msa0042370:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTTACTTATGAATT+GGG + chr1_1:73200932-73200951 Msa0042370:intron 10.0%
!!! TTTCATTTTTTGTATATTAT+TGG + chr1_1:73202861-73202880 Msa0042370:intron 10.0%
!! GTTATAATTTACTTATGAAT+TGG + chr1_1:73200931-73200950 Msa0042370:intron 15.0%
!!! TTTTTGGTAAAAAAAATCAT+AGG - chr1_1:73201144-73201163 None:intergenic 15.0%
!!! TTTTTATTTATTTGTCTATG+TGG + chr1_1:73201319-73201338 Msa0042370:intron 15.0%
!! AACATATGGAATTTATAATA+TGG + chr1_1:73201689-73201708 Msa0042370:intron 15.0%
!!! TAGTAATTTAGTTTGAATTT+TGG + chr1_1:73201816-73201835 Msa0042370:intron 15.0%
!! TTAATGCATTAAAAAAAGAA+GGG - chr1_1:73202140-73202159 None:intergenic 15.0%
!! TCATAATTTATATAAGATGA+AGG + chr1_1:73203098-73203117 Msa0042370:intron 15.0%
!!! ATTTCATGTTTGATAATAAT+GGG - chr1_1:73203717-73203736 None:intergenic 15.0%
!!! TATTTCATGTTTGATAATAA+TGG - chr1_1:73203718-73203737 None:intergenic 15.0%
!!! AATATATTTTTTTTAAGAGC+AGG + chr1_1:73204013-73204032 Msa0042370:intron 15.0%
!!! ATATATTTTTTTTAAGAGCA+GGG + chr1_1:73204014-73204033 Msa0042370:intron 15.0%
!!! TTTTTGTTGCTTATTATAAA+TGG + chr1_1:73204321-73204340 Msa0042370:intron 15.0%
!!! TTAGTTTTTTTTTTAGTAAG+TGG + chr1_1:73204839-73204858 Msa0042370:three_prime_UTR 15.0%
!!! TAGTTTTTTTTTTAGTAAGT+GGG + chr1_1:73204840-73204859 Msa0042370:three_prime_UTR 15.0%
!!! CAACAACATTTAATTTTGAT+TGG + chr1_1:73200402-73200421 Msa0042370:five_prime_UTR 20.0%
!! TAATCATGTTTATTTAGATC+TGG + chr1_1:73200816-73200835 Msa0042370:five_prime_UTR 20.0%
!!! TTTGTAGCTACAATTTTTTA+CGG + chr1_1:73200872-73200891 Msa0042370:intron 20.0%
!! ATTCAAATTAATTAGAACCA+GGG - chr1_1:73201046-73201065 None:intergenic 20.0%
!! AATTCAAATTAATTAGAACC+AGG - chr1_1:73201047-73201066 None:intergenic 20.0%
!!! TTAATTTGAATTTGTTGTTG+TGG + chr1_1:73201055-73201074 Msa0042370:intron 20.0%
!! TTCAGCACAAAAAAAATTAT+TGG - chr1_1:73201375-73201394 None:intergenic 20.0%
!!! ACTTCTAATTGTTCTTTTAT+TGG + chr1_1:73201414-73201433 Msa0042370:intron 20.0%
!!! CTTCTAATTGTTCTTTTATT+GGG + chr1_1:73201415-73201434 Msa0042370:intron 20.0%
!!! TTCTAATTGTTCTTTTATTG+GGG + chr1_1:73201416-73201435 Msa0042370:intron 20.0%
!!! ATTAGTTTATTCTATAGAGA+AGG - chr1_1:73201858-73201877 None:intergenic 20.0%
!! AAGATATTTACTAATGCAAA+GGG - chr1_1:73202103-73202122 None:intergenic 20.0%
!! GTTAATGCATTAAAAAAAGA+AGG - chr1_1:73202141-73202160 None:intergenic 20.0%
!!! ATTGATTTTTTTGTTAGTCT+TGG + chr1_1:73202280-73202299 Msa0042370:intron 20.0%
!! AAATATGAAAATATGAACGT+TGG - chr1_1:73202605-73202624 None:intergenic 20.0%
!! ATAAAATACCAGAAATTAGA+AGG - chr1_1:73202629-73202648 None:intergenic 20.0%
!! TTAACTGATCATGAAAATAA+AGG - chr1_1:73203220-73203239 None:intergenic 20.0%
!!! TTTCATGTTTGATAATAATG+GGG - chr1_1:73203716-73203735 None:intergenic 20.0%
!!! TTTAATTTTAGACTCATTGT+AGG + chr1_1:73204068-73204087 Msa0042370:intron 20.0%
!!! TTAATTTTAGACTCATTGTA+GGG + chr1_1:73204069-73204088 Msa0042370:intron 20.0%
!!! AATTTTATAAAGCATTCAAG+AGG - chr1_1:73204491-73204510 None:intergenic 20.0%
!!! AGTTTTTTTTTTAGTAAGTG+GGG + chr1_1:73204841-73204860 Msa0042370:three_prime_UTR 20.0%
! AAAATTAAATGTTGTTGCTG+CGG - chr1_1:73200399-73200418 None:intergenic 25.0%
! ATACTTGGTTATGATATTGT+TGG + chr1_1:73200967-73200986 Msa0042370:intron 25.0%
! CAAATATCAGATTGTGAAAA+TGG + chr1_1:73201082-73201101 Msa0042370:intron 25.0%
! AAATTGCTAAGAGAATCAAT+AGG + chr1_1:73201107-73201126 Msa0042370:five_prime_UTR 25.0%
!!! TGTAACTTTTTGCTAGTTTT+TGG - chr1_1:73201160-73201179 None:intergenic 25.0%
!!! TTTTGTTTCTCAATCATTGT+AGG + chr1_1:73201186-73201205 Msa0042370:intron 25.0%
! TTTGTACAATTATGATGTCT+TGG + chr1_1:73201548-73201567 Msa0042370:intron 25.0%
! TAACAAAATCTTTCCCAATT+TGG - chr1_1:73201758-73201777 None:intergenic 25.0%
!!! AGTGAATTTTAAGTGTAAGT+TGG + chr1_1:73201923-73201942 Msa0042370:intron 25.0%
! CAAGATATTTACTAATGCAA+AGG - chr1_1:73202104-73202123 None:intergenic 25.0%
! ATGAAATTTGACTACTTAAG+TGG - chr1_1:73202186-73202205 None:intergenic 25.0%
! GCTTTATAGAACAAAGAATT+TGG - chr1_1:73202339-73202358 None:intergenic 25.0%
! GAAAGAAAGACTAATAAAAG+GGG - chr1_1:73202407-73202426 None:intergenic 25.0%
! GGAAAGAAAGACTAATAAAA+GGG - chr1_1:73202408-73202427 None:intergenic 25.0%
! TGGAAAGAAAGACTAATAAA+AGG - chr1_1:73202409-73202428 None:intergenic 25.0%
! GATGAAATTCAAAATGATAG+AGG - chr1_1:73202508-73202527 None:intergenic 25.0%
!! CATATTTTCCTTCTAATTTC+TGG + chr1_1:73202618-73202637 Msa0042370:intron 25.0%
! AGAGCAAAAATATGAACATT+TGG - chr1_1:73202755-73202774 None:intergenic 25.0%
! TCCTATATAATGTTAACTCT+GGG - chr1_1:73203124-73203143 None:intergenic 25.0%
! ATCCTATATAATGTTAACTC+TGG - chr1_1:73203125-73203144 None:intergenic 25.0%
!! ACATATCTCTACTTCTATTT+TGG + chr1_1:73203327-73203346 Msa0042370:intron 25.0%
!! CATATCTCTACTTCTATTTT+GGG + chr1_1:73203328-73203347 Msa0042370:intron 25.0%
! TGTATGCTAAAATTCAGTTT+AGG + chr1_1:73203606-73203625 Msa0042370:intron 25.0%
! TAAAAATGATAACCTTGTGA+CGG + chr1_1:73203787-73203806 Msa0042370:intron 25.0%
! AGTAAACGATATGATTATTG+AGG + chr1_1:73203872-73203891 Msa0042370:intron 25.0%
!!! ATATCATCACTTTTGTTTGT+AGG + chr1_1:73203911-73203930 Msa0042370:intron 25.0%
!! ATTTTGCCACAATTCTTATA+TGG + chr1_1:73203935-73203954 Msa0042370:exon 25.0%
!! AGGGTATAAGTTTTTCTTAT+AGG + chr1_1:73204033-73204052 Msa0042370:intron 25.0%
!! TAATTTTAGACTCATTGTAG+GGG + chr1_1:73204070-73204089 Msa0042370:intron 25.0%
! GATTATATCAAGAAAGTTGT+TGG + chr1_1:73204127-73204146 Msa0042370:CDS 25.0%
!!! CAGGTTTCTAAAATTAACTA+AGG + chr1_1:73204588-73204607 Msa0042370:intron 25.0%
TTCATCGAATTAGAAGAAGA+CGG - chr1_1:73200491-73200510 None:intergenic 30.0%
TGTTAAACAGTGGAAGAATT+TGG + chr1_1:73200514-73200533 Msa0042370:five_prime_UTR 30.0%
GTTAAACAGTGGAAGAATTT+GGG + chr1_1:73200515-73200534 Msa0042370:five_prime_UTR 30.0%
TTTCAAAGACTTGATTGAAG+TGG + chr1_1:73200575-73200594 Msa0042370:five_prime_UTR 30.0%
TTCAAAGACTTGATTGAAGT+GGG + chr1_1:73200576-73200595 Msa0042370:five_prime_UTR 30.0%
TCCAAAAACAAACGTTTCTA+CGG - chr1_1:73200660-73200679 None:intergenic 30.0%
!!! AGCTACAATTTTTTACGGTT+TGG + chr1_1:73200877-73200896 Msa0042370:intron 30.0%
!!! GGGTTTTTTGTTTTCATACT+TGG + chr1_1:73200952-73200971 Msa0042370:intron 30.0%
! TTTTGTAATCATGATTTCCC+TGG + chr1_1:73201026-73201045 Msa0042370:intron 30.0%
TTTAATTGCAGCTATTCATC+TGG + chr1_1:73201254-73201273 Msa0042370:intron 30.0%
ACCTATCATCAAATAGATTG+AGG + chr1_1:73201289-73201308 Msa0042370:intron 30.0%
! ACCTCAATCTATTTGATGAT+AGG - chr1_1:73201293-73201312 None:intergenic 30.0%
! CAATTAGAAGTGCATTTCAA+AGG - chr1_1:73201405-73201424 None:intergenic 30.0%
! TAATTGTTCTTTTATTGGGG+TGG + chr1_1:73201419-73201438 Msa0042370:intron 30.0%
GGAGAAATCAATTCATTTCA+GGG - chr1_1:73201495-73201514 None:intergenic 30.0%
AGGAGAAATCAATTCATTTC+AGG - chr1_1:73201496-73201515 None:intergenic 30.0%
TTTCATTGCTACTAAGCATA+CGG + chr1_1:73201618-73201637 Msa0042370:intron 30.0%
TTACTTCAGAATGCAACATA+TGG + chr1_1:73201675-73201694 Msa0042370:intron 30.0%
GAGCATTTGAAAATTGTCTT+GGG - chr1_1:73201993-73202012 None:intergenic 30.0%
TGAGCATTTGAAAATTGTCT+TGG - chr1_1:73201994-73202013 None:intergenic 30.0%
TTAAAGATAGAGTTTGAGCA+AGG + chr1_1:73202232-73202251 Msa0042370:intron 30.0%
TATCATAAGTATTTCCCGTT+AGG + chr1_1:73202310-73202329 Msa0042370:intron 30.0%
GAATGAAGGAAGATTGAAAT+TGG - chr1_1:73202429-73202448 None:intergenic 30.0%
TTATGCTCTTGAATGTGATA+TGG + chr1_1:73202645-73202664 Msa0042370:intron 30.0%
CATATATTTCATGCTCTTGA+AGG + chr1_1:73202780-73202799 Msa0042370:intron 30.0%
! AAATACTTTTCCAAAACCCA+TGG - chr1_1:73202974-73202993 None:intergenic 30.0%
TTAATCCAAGATGCAAACTA+AGG - chr1_1:73203044-73203063 None:intergenic 30.0%
!! TTAGCATCTTGTTGTTGTTT+AGG + chr1_1:73203398-73203417 Msa0042370:intron 30.0%
TATAATATTGTAGACCGCAA+GGG - chr1_1:73203452-73203471 None:intergenic 30.0%
ATATAATATTGTAGACCGCA+AGG - chr1_1:73203453-73203472 None:intergenic 30.0%
!! TAGTGCATTTTCACTTTTCA+GGG - chr1_1:73203524-73203543 None:intergenic 30.0%
!! TTAGTGCATTTTCACTTTTC+AGG - chr1_1:73203525-73203544 None:intergenic 30.0%
AAAAATGATAACCTTGTGAC+GGG + chr1_1:73203788-73203807 Msa0042370:intron 30.0%
ATTGGTCCATATAAGAATTG+TGG - chr1_1:73203944-73203963 None:intergenic 30.0%
CAATTCTTATATGGACCAAT+TGG + chr1_1:73203944-73203963 Msa0042370:exon 30.0%
TCAAGAAAGTTGTTGGTATA+TGG + chr1_1:73204134-73204153 Msa0042370:intron 30.0%
! TTGACCAAATTTTCTTCGTA+TGG + chr1_1:73204207-73204226 Msa0042370:intron 30.0%
! TGACCAAATTTTCTTCGTAT+GGG + chr1_1:73204208-73204227 Msa0042370:intron 30.0%
TATCCCATACGAAGAAAATT+TGG - chr1_1:73204214-73204233 None:intergenic 30.0%
!!! TTTATTTTAATGCCTGCAGT+TGG + chr1_1:73204274-73204293 Msa0042370:intron 30.0%
TTATGCATTAAGTACTAGTG+TGG + chr1_1:73204441-73204460 Msa0042370:intron 30.0%
! TTATAAAGCATTCAAGAGGA+AGG - chr1_1:73204487-73204506 None:intergenic 30.0%
TCGAAATTAAAGGAAATCGC+TGG - chr1_1:73200376-73200395 None:intergenic 35.0%
TTCAGACGACGATGAAATTA+GGG - chr1_1:73200441-73200460 None:intergenic 35.0%
ATTCAGACGACGATGAAATT+AGG - chr1_1:73200442-73200461 None:intergenic 35.0%
!!! GTAGAAACGTTTGTTTTTGG+AGG + chr1_1:73200659-73200678 Msa0042370:five_prime_UTR 35.0%
! GTTGTTGTTGTTGTTGAGTT+GGG + chr1_1:73200737-73200756 Msa0042370:five_prime_UTR 35.0%
!! TTGTTGTTGAGTTGGGAAAT+TGG + chr1_1:73200744-73200763 Msa0042370:five_prime_UTR 35.0%
!! TGTTGTTGAGTTGGGAAATT+GGG + chr1_1:73200745-73200764 Msa0042370:five_prime_UTR 35.0%
TTTCTCAATCATTGTAGGCT+TGG + chr1_1:73201191-73201210 Msa0042370:intron 35.0%
TTTCTCCTCAATGCATAAGA+AGG + chr1_1:73201508-73201527 Msa0042370:five_prime_UTR 35.0%
TAGCAATGAAACACATGACA+AGG - chr1_1:73201609-73201628 None:intergenic 35.0%
TCAACATAATGCCACCAAAT+TGG + chr1_1:73201741-73201760 Msa0042370:intron 35.0%
CAACATAATGCCACCAAATT+GGG + chr1_1:73201742-73201761 Msa0042370:intron 35.0%
CAAAATCTTTCCCAATTTGG+TGG - chr1_1:73201755-73201774 None:intergenic 35.0%
TGAGAGTTATGTATGCAAGT+GGG + chr1_1:73202051-73202070 Msa0042370:intron 35.0%
AAAGAATTTGGCAACCTAAC+GGG - chr1_1:73202327-73202346 None:intergenic 35.0%
CAAAGAATTTGGCAACCTAA+CGG - chr1_1:73202328-73202347 None:intergenic 35.0%
CGATCGAAATGAATGAATGA+AGG - chr1_1:73202443-73202462 None:intergenic 35.0%
!!! GTACTCTAGTTTTTCATCGA+TGG + chr1_1:73202551-73202570 Msa0042370:intron 35.0%
! GAATGTGATATGGTCGATTT+AGG + chr1_1:73202655-73202674 Msa0042370:intron 35.0%
TTGTATGTAACCACATGTGT+CGG - chr1_1:73202837-73202856 None:intergenic 35.0%
!! ATTGGTGTCAGTATATGTGT+TGG + chr1_1:73202879-73202898 Msa0042370:intron 35.0%
GTGATGAAGCTAAACATAGT+AGG - chr1_1:73202948-73202967 None:intergenic 35.0%
!! TCTTTCCTTAGTTTGCATCT+TGG + chr1_1:73203036-73203055 Msa0042370:intron 35.0%
GCCCAGAGTTAACATTATAT+AGG + chr1_1:73203120-73203139 Msa0042370:intron 35.0%
! TTCAGATATCTTTTCCCTTG+CGG + chr1_1:73203435-73203454 Msa0042370:five_prime_UTR 35.0%
!! AGTGCATTTTCACTTTTCAG+GGG - chr1_1:73203523-73203542 None:intergenic 35.0%
AACTAAATCAACAGAACACG+AGG - chr1_1:73203584-73203603 None:intergenic 35.0%
! AAGCCATGTTTCTGCAATAA+AGG - chr1_1:73203669-73203688 None:intergenic 35.0%
!! TTAAAAGTATTCCCGTCACA+AGG - chr1_1:73203802-73203821 None:intergenic 35.0%
! CGGGAATACTTTTAACCAAA+AGG + chr1_1:73203807-73203826 Msa0042370:intron 35.0%
GATATGAAGCAACAACTAGT+CGG - chr1_1:73203837-73203856 None:intergenic 35.0%
TATATGGACCAATTGGCAAT+TGG + chr1_1:73203951-73203970 Msa0042370:exon 35.0%
TATCCAAACCAATTGCCAAT+TGG - chr1_1:73203962-73203981 None:intergenic 35.0%
GAAGATCAACTCTATGTCTA+AGG - chr1_1:73204410-73204429 None:intergenic 35.0%
AAATCGCTGGAGTTTCTGAT+CGG - chr1_1:73200363-73200382 None:intergenic 40.0%
CGATGAACGTTGTTAAACAG+TGG + chr1_1:73200504-73200523 Msa0042370:five_prime_UTR 40.0%
! AGTGGAAGAATTTGGGTTTC+TGG + chr1_1:73200522-73200541 Msa0042370:five_prime_UTR 40.0%
!! GCCGTAGAAACGTTTGTTTT+TGG + chr1_1:73200656-73200675 Msa0042370:five_prime_UTR 40.0%
!!! GAAACGTTTGTTTTTGGAGG+CGG + chr1_1:73200662-73200681 Msa0042370:five_prime_UTR 40.0%
! GGTTGTTGTTGTTGTTGAGT+TGG + chr1_1:73200736-73200755 Msa0042370:five_prime_UTR 40.0%
!! GTTGTTGAGTTGGGAAATTG+GGG + chr1_1:73200746-73200765 Msa0042370:five_prime_UTR 40.0%
GGAAAATGGCTATATGAGTG+CGG + chr1_1:73200771-73200790 Msa0042370:five_prime_UTR 40.0%
TGCAAAGTTCGATTGAGACA+TGG + chr1_1:73201452-73201471 Msa0042370:intron 40.0%
TTTCAGGGACTTGTGATTCT+TGG - chr1_1:73201480-73201499 None:intergenic 40.0%
TCTCACCTTCTTATGCATTG+AGG - chr1_1:73201516-73201535 None:intergenic 40.0%
GTGAGAGTTATGTATGCAAG+TGG + chr1_1:73202050-73202069 Msa0042370:intron 40.0%
ATTAACTTTGCCGAGAGAGA+AGG + chr1_1:73202155-73202174 Msa0042370:intron 40.0%
TTCATCTCGCAATCGATCTA+AGG + chr1_1:73202472-73202491 Msa0042370:intron 40.0%
! TTTAGCTTCATCACCTTCCA+TGG + chr1_1:73202954-73202973 Msa0042370:intron 40.0%
TTAGCTTCATCACCTTCCAT+GGG + chr1_1:73202955-73202974 Msa0042370:intron 40.0%
! ACTTTTCCAAAACCCATGGA+AGG - chr1_1:73202970-73202989 None:intergenic 40.0%
CTTAAAAATGCGCACATCGA+TGG - chr1_1:73203005-73203024 None:intergenic 40.0%
ATGAACGCCTAGAGTTAACA+CGG + chr1_1:73203157-73203176 Msa0042370:intron 40.0%
TTGGGTAACTTGACATGTAG+AGG + chr1_1:73203346-73203365 Msa0042370:intron 40.0%
TGGGTAACTTGACATGTAGA+GGG + chr1_1:73203347-73203366 Msa0042370:intron 40.0%
TGAGCTTAAACTTCCCACAA+AGG + chr1_1:73203472-73203491 Msa0042370:five_prime_UTR 40.0%
! CCATGTTTCTGCAATAAAGG+AGG - chr1_1:73203666-73203685 None:intergenic 40.0%
CCTCCTTTATTGCAGAAACA+TGG + chr1_1:73203663-73203682 Msa0042370:intron 40.0%
GGGTAATTCTCACAAGTACA+TGG + chr1_1:73204090-73204109 Msa0042370:CDS 40.0%
TATCCAAAGATACCAACTGC+AGG - chr1_1:73204289-73204308 None:intergenic 40.0%
GTTGAGACACAAGACTAAAG+TGG - chr1_1:73204359-73204378 None:intergenic 40.0%
TGAAATGCACATACGCTAAC+AGG + chr1_1:73204569-73204588 Msa0042370:intron 40.0%
CACAAGTCTTGAAGAATGTG+AGG + chr1_1:73204653-73204672 Msa0042370:CDS 40.0%
AGCTCATCAGTTGAGTTCAT+TGG - chr1_1:73204786-73204805 None:intergenic 40.0%
!! AGAGAAGCACTTGTATCAAG+TGG + chr1_1:73204811-73204830 Msa0042370:three_prime_UTR 40.0%
!! GAGAAGCACTTGTATCAAGT+GGG + chr1_1:73204812-73204831 Msa0042370:three_prime_UTR 40.0%
!! AGAAGCACTTGTATCAAGTG+GGG + chr1_1:73204813-73204832 Msa0042370:three_prime_UTR 40.0%
TTTCTGATCGGCAGTATCGT+CGG - chr1_1:73200351-73200370 None:intergenic 45.0%
GTTGCTGCGGTCGAAATTAA+AGG - chr1_1:73200386-73200405 None:intergenic 45.0%
!! TTTCTGGTTTCAAGCTCACC+AGG + chr1_1:73200538-73200557 Msa0042370:five_prime_UTR 45.0%
GTTTCAAGCTCACCAGGTTT+GGG + chr1_1:73200544-73200563 Msa0042370:five_prime_UTR 45.0%
TTTCAAGCTCACCAGGTTTG+GGG + chr1_1:73200545-73200564 Msa0042370:five_prime_UTR 45.0%
GAAAGCAAAATCCCCAAACC+TGG - chr1_1:73200559-73200578 None:intergenic 45.0%
GGAATATGCTGCAATGCTAC+AGG - chr1_1:73200621-73200640 None:intergenic 45.0%
TACGGCACATTCGAACATCA+AGG - chr1_1:73200642-73200661 None:intergenic 45.0%
!!! TTTGTTTTTGGAGGCGGAGA+AGG + chr1_1:73200668-73200687 Msa0042370:five_prime_UTR 45.0%
TTTGAGGAGGAATGAGGTGT+TGG + chr1_1:73200707-73200726 Msa0042370:five_prime_UTR 45.0%
! TTGAGGAGGAATGAGGTGTT+GGG + chr1_1:73200708-73200727 Msa0042370:five_prime_UTR 45.0%
!! TTGAGTTGGGAAATTGGGGA+AGG + chr1_1:73200750-73200769 Msa0042370:five_prime_UTR 45.0%
GGGAAATTGGGGAAGGAAAA+TGG + chr1_1:73200757-73200776 Msa0042370:five_prime_UTR 45.0%
AAATGGCTATATGAGTGCGG+CGG + chr1_1:73200774-73200793 Msa0042370:five_prime_UTR 45.0%
TGTACACTGCATGACAAGCT+TGG - chr1_1:73201968-73201987 None:intergenic 45.0%
AGTGGTACATCCTTCTCTCT+CGG - chr1_1:73202168-73202187 None:intergenic 45.0%
! TCATCACCTTCCATGGGTTT+TGG + chr1_1:73202961-73202980 Msa0042370:intron 45.0%
TGAACGCCTAGAGTTAACAC+GGG + chr1_1:73203158-73203177 Msa0042370:intron 45.0%
AACAGACCCGTGTTAACTCT+AGG - chr1_1:73203167-73203186 None:intergenic 45.0%
ACAGAACACGAGGCTTACAT+AGG - chr1_1:73203574-73203593 None:intergenic 45.0%
ATGAAGCAACAACTAGTCGG+TGG - chr1_1:73203834-73203853 None:intergenic 45.0%
GGACCAATTGGCAATTGGTT+TGG + chr1_1:73203956-73203975 Msa0042370:CDS 45.0%
! ATGCCTGCAGTTGGTATCTT+TGG + chr1_1:73204283-73204302 Msa0042370:intron 45.0%
! ATGTGAGGTGAAGTGCTTGA+CGG + chr1_1:73204668-73204687 Msa0042370:CDS 45.0%
TACACACTCTCTGCCATAGA+TGG + chr1_1:73204708-73204727 Msa0042370:CDS 45.0%
GATTTGGAGACTTGACTGAC+TGG + chr1_1:73204754-73204773 Msa0042370:exon 45.0%
CGGTGGTGTTTCTCTAGTGT+GGG - chr1_1:73200331-73200350 None:intergenic 50.0%
TCGGTGGTGTTTCTCTAGTG+TGG - chr1_1:73200332-73200351 None:intergenic 50.0%
GGTTTCAAGCTCACCAGGTT+TGG + chr1_1:73200543-73200562 Msa0042370:five_prime_UTR 50.0%
TTTGGAGGCGGAGAAGGATT+TGG + chr1_1:73200674-73200693 Msa0042370:five_prime_UTR 50.0%
ATTTGGTACGCCGGAGTTTG+AGG + chr1_1:73200691-73200710 Msa0042370:five_prime_UTR 50.0%
CCTCATTCCTCCTCAAACTC+CGG - chr1_1:73200704-73200723 None:intergenic 50.0%
ATGTCGAACACCGACACATG+TGG + chr1_1:73202824-73202843 Msa0042370:intron 50.0%
AACTTCCCACAAAGGCTGCA+AGG + chr1_1:73203480-73203499 Msa0042370:five_prime_UTR 50.0%
TCCATCCTTGCAGCCTTTGT+GGG - chr1_1:73203488-73203507 None:intergenic 50.0%
! CAACTAGTCGGTGGACCTTT+TGG - chr1_1:73203825-73203844 None:intergenic 50.0%
TGCCTACGTTGTTGCAGTTC+AGG + chr1_1:73204617-73204636 Msa0042370:intron 50.0%
GTCCTGAACTGCAACAACGT+AGG - chr1_1:73204622-73204641 None:intergenic 50.0%
ACACTCTCTGCCATAGATGG+AGG + chr1_1:73204711-73204730 Msa0042370:CDS 50.0%
CACTCTCTGCCATAGATGGA+GGG + chr1_1:73204712-73204731 Msa0042370:CDS 50.0%
AATCAAAGCCTGCCATCACG+AGG - chr1_1:73204738-73204757 None:intergenic 50.0%
! CGTGATGGCAGGCTTTGATT+TGG + chr1_1:73204738-73204757 Msa0042370:exon 50.0%
! CGGAGAAGGATTTGGTACGC+CGG + chr1_1:73200682-73200701 Msa0042370:five_prime_UTR 55.0%
CCGGAGTTTGAGGAGGAATG+AGG + chr1_1:73200701-73200720 Msa0042370:five_prime_UTR 55.0%
!! AGGAGGAATGAGGTGTTGGG+AGG + chr1_1:73200711-73200730 Msa0042370:five_prime_UTR 55.0%
!! GGAATGAGGTGTTGGGAGGA+CGG + chr1_1:73200715-73200734 Msa0042370:five_prime_UTR 55.0%
! CATGCTCTTGAAGGTGTGCC+CGG + chr1_1:73202789-73202808 Msa0042370:intron 55.0%
TCGACATCGATACGTGTCGC+CGG - chr1_1:73202811-73202830 None:intergenic 55.0%
TCCCACAAAGGCTGCAAGGA+TGG + chr1_1:73203484-73203503 Msa0042370:five_prime_UTR 55.0%
CTCCATCCTTGCAGCCTTTG+TGG - chr1_1:73203489-73203508 None:intergenic 55.0%
CAAAGGCTGCAAGGATGGAG+TGG + chr1_1:73203489-73203508 Msa0042370:five_prime_UTR 55.0%
ATCACGAGGCCCTCCATCTA+TGG - chr1_1:73204724-73204743 None:intergenic 55.0%
ATAGATGGAGGGCCTCGTGA+TGG + chr1_1:73204723-73204742 Msa0042370:CDS 55.0%
CTGATCGGCAGTATCGTCGG+TGG - chr1_1:73200348-73200367 None:intergenic 60.0%
TGGTACGCCGGAGTTTGAGG+AGG + chr1_1:73200694-73200713 Msa0042370:five_prime_UTR 60.0%
CGACATCGATACGTGTCGCC+GGG - chr1_1:73202810-73202829 None:intergenic 60.0%
AGGCTGCAAGGATGGAGTGG+TGG + chr1_1:73203492-73203511 Msa0042370:five_prime_UTR 60.0%
CTGCAAGGATGGAGTGGTGG+TGG + chr1_1:73203495-73203514 Msa0042370:five_prime_UTR 60.0%
ATGGAGGGCCTCGTGATGGC+AGG + chr1_1:73204727-73204746 Msa0042370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73200305 73204942 73200305 ID=Msa0042370;Name=Msa0042370
chr1_1 mRNA 73200305 73204942 73200305 ID=Msa0042370-mRNA-1;Parent=Msa0042370;Name=Msa0042370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=942|0.85|0.87|1|0.28|0.25|8|187|73
chr1_1 exon 73200305 73200837 73200305 ID=Msa0042370-mRNA-1:exon:24459;Parent=Msa0042370-mRNA-1
chr1_1 exon 73201092 73201180 73201092 ID=Msa0042370-mRNA-1:exon:24460;Parent=Msa0042370-mRNA-1
chr1_1 exon 73201459 73201529 73201459 ID=Msa0042370-mRNA-1:exon:24461;Parent=Msa0042370-mRNA-1
chr1_1 exon 73203420 73203575 73203420 ID=Msa0042370-mRNA-1:exon:24462;Parent=Msa0042370-mRNA-1
chr1_1 exon 73203678 73203749 73203678 ID=Msa0042370-mRNA-1:exon:24463;Parent=Msa0042370-mRNA-1
chr1_1 exon 73203933 73203994 73203933 ID=Msa0042370-mRNA-1:exon:24464;Parent=Msa0042370-mRNA-1
chr1_1 exon 73204090 73204148 73204090 ID=Msa0042370-mRNA-1:exon:24465;Parent=Msa0042370-mRNA-1
chr1_1 exon 73204634 73204942 73204634 ID=Msa0042370-mRNA-1:exon:24466;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73200305 73200837 73200305 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73201092 73201180 73201092 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73201459 73201529 73201459 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73203420 73203575 73203420 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73203678 73203749 73203678 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 five_prime_UTR 73203933 73203953 73203933 ID=Msa0042370-mRNA-1:five_prime_utr;Parent=Msa0042370-mRNA-1
chr1_1 CDS 73203954 73203994 73203954 ID=Msa0042370-mRNA-1:cds;Parent=Msa0042370-mRNA-1
chr1_1 CDS 73204090 73204148 73204090 ID=Msa0042370-mRNA-1:cds;Parent=Msa0042370-mRNA-1
chr1_1 CDS 73204634 73204755 73204634 ID=Msa0042370-mRNA-1:cds;Parent=Msa0042370-mRNA-1
chr1_1 three_prime_UTR 73204756 73204942 73204756 ID=Msa0042370-mRNA-1:three_prime_utr;Parent=Msa0042370-mRNA-1
Gene Sequence

>Msa0042370

ATGGACCAATTGGCAATTGGTTTGGATAATCTCAAAGAGATGGGTAATTCTCACAAGTACATGGACTTTGCACTTGAAGATTATATCAAGAAAGTTGTTGTTCAGGACAATAATAGTAGCACAAGTCTTGAAGAATGTGAGGTGAAGTGCTTGACGGATTGTTCTTGCACTATATACACACTCTCTGCCATAGATGGAGGGCCTCGTGATGGCAGGCTTTGA

Protein sequence

>Msa0042370

MDQLAIGLDNLKEMGNSHKYMDFALEDYIKKVVVQDNNSSTSLEECEVKCLTDCSCTIYTLSAIDGGPRDGRL*