Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044110 | Msa1369710 | 0.803671 | 3.118898e-49 | -8.615850e-47 |
| Msa0044110 | Msa1460390 | 0.821926 | 3.113218e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044110 | MtrunA17_Chr1g0210731 | 96.813 | 251 | 8 | 0 | 1 | 251 | 55 | 305 | 0.0 | 504 |
| Msa0044110 | MtrunA17_Chr1g0210721 | 67.470 | 249 | 69 | 5 | 1 | 246 | 56 | 295 | 1.66e-111 | 322 |
| Msa0044110 | MtrunA17_Chr2g0287431 | 56.967 | 244 | 98 | 6 | 8 | 249 | 63 | 301 | 6.22e-85 | 256 |
| Msa0044110 | MtrunA17_Chr4g0033971 | 34.184 | 196 | 121 | 3 | 34 | 222 | 84 | 278 | 3.26e-34 | 124 |
| Msa0044110 | MtrunA17_Chr8g0369411 | 33.690 | 187 | 118 | 3 | 26 | 212 | 82 | 262 | 2.32e-26 | 103 |
| Msa0044110 | MtrunA17_Chr5g0409571 | 29.612 | 206 | 133 | 5 | 27 | 232 | 83 | 276 | 6.45e-24 | 97.1 |
| Msa0044110 | MtrunA17_Chr7g0227861 | 32.335 | 167 | 111 | 2 | 71 | 235 | 100 | 266 | 2.66e-20 | 87.8 |
| Msa0044110 | MtrunA17_Chr8g0369401 | 33.333 | 138 | 87 | 3 | 75 | 212 | 32 | 164 | 2.02e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044110 | AT1G55230.1 | 57.143 | 238 | 100 | 2 | 1 | 238 | 56 | 291 | 5.18e-94 | 278 |
| Msa0044110 | AT1G55240.1 | 55.462 | 238 | 105 | 1 | 1 | 238 | 56 | 292 | 8.23e-90 | 268 |
| Msa0044110 | AT5G19870.1 | 54.206 | 214 | 96 | 1 | 10 | 223 | 65 | 276 | 2.01e-85 | 256 |
| Msa0044110 | AT1G49470.1 | 33.663 | 202 | 119 | 3 | 36 | 227 | 83 | 279 | 1.84e-29 | 112 |
| Msa0044110 | AT1G32127.2 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 4.15e-21 | 89.7 |
| Msa0044110 | AT1G32127.1 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 4.15e-21 | 89.7 |
| Msa0044110 | AT3G01360.2 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 9.82e-16 | 75.9 |
| Msa0044110 | AT3G01360.1 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 9.82e-16 | 75.9 |
Find 51 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCCTGTGGTGATCTTT+TGG | 0.244017 | 1_1:-75601201 | None:intergenic |
| AGGTTTGTGGCTTATGTTCA+TGG | 0.293266 | 1_1:+75600892 | Msa0044110:CDS |
| CAATTCAGCTGGTTCTTGAT+TGG | 0.309654 | 1_1:+75601040 | Msa0044110:CDS |
| CTTACAACCCTTATGGGAAT+TGG | 0.312435 | 1_1:+75600815 | Msa0044110:CDS |
| GAAGGAATGGTACCATCATT+AGG | 0.341448 | 1_1:-75600551 | None:intergenic |
| TCAAAACTTGCAGTAAATAA+TGG | 0.355405 | 1_1:-75600778 | None:intergenic |
| AAATGAAATTACTCATTTGC+TGG | 0.360728 | 1_1:+75600679 | Msa0044110:CDS |
| TGTGTCCTTCTACTTGATTA+TGG | 0.364513 | 1_1:+75601078 | Msa0044110:CDS |
| TGGTTATCCAATGAGCTTCT+TGG | 0.366591 | 1_1:+75600835 | Msa0044110:CDS |
| TTGATTATGGCTGTAAGTTA+TGG | 0.394009 | 1_1:+75601091 | Msa0044110:CDS |
| TGGATAACCAATTCCCATAA+GGG | 0.413010 | 1_1:-75600822 | None:intergenic |
| CAAGTTATTCAGATTTGCTC+TGG | 0.427300 | 1_1:-75601223 | None:intergenic |
| AGAGATCACATGGGTATAGA+AGG | 0.434296 | 1_1:+75600749 | Msa0044110:CDS |
| TTGGATAACCAATTCCCATA+AGG | 0.437321 | 1_1:-75600823 | None:intergenic |
| GCATAACCTTCCAAGGTTTG+TGG | 0.438782 | 1_1:+75600879 | Msa0044110:CDS |
| TACAGCCATAATCAAGTAGA+AGG | 0.441076 | 1_1:-75601083 | None:intergenic |
| GGTTTGTGGCTTATGTTCAT+GGG | 0.442596 | 1_1:+75600893 | Msa0044110:CDS |
| AAACTCACCAAGAAGCTCAT+TGG | 0.454952 | 1_1:-75600842 | None:intergenic |
| TGGTGAATCTTCAATTCAGC+TGG | 0.455765 | 1_1:+75601029 | Msa0044110:CDS |
| CAACTTTGAACACTCTTCCA+TGG | 0.473299 | 1_1:+75600586 | Msa0044110:CDS |
| AAGGAATGGTACCATCATTA+GGG | 0.479670 | 1_1:-75600550 | None:intergenic |
| GTACCATCATTAGGGTCAAA+TGG | 0.486202 | 1_1:-75600542 | None:intergenic |
| CAACCTTTCGGTTCAAAACC+AGG | 0.497142 | 1_1:-75600932 | None:intergenic |
| AGTTTCGTAAAGCAACCTTT+CGG | 0.505192 | 1_1:-75600944 | None:intergenic |
| GTGGAGATGGTTGGAAGGAA+TGG | 0.517817 | 1_1:-75600564 | None:intergenic |
| TGAACATAAGCCACAAACCT+TGG | 0.521512 | 1_1:-75600889 | None:intergenic |
| TCTGTTAGCATAACCTTCCA+AGG | 0.527914 | 1_1:+75600872 | Msa0044110:CDS |
| AGTGTTCAAAGTTGTGGAGA+TGG | 0.532689 | 1_1:-75600577 | None:intergenic |
| GAGGAACATTATCGTGAAGA+TGG | 0.535159 | 1_1:+75601148 | Msa0044110:CDS |
| TGGAAGAGTGTTCAAAGTTG+TGG | 0.544369 | 1_1:-75600583 | None:intergenic |
| TTCAAAGTTGTGGAGATGGT+TGG | 0.544658 | 1_1:-75600573 | None:intergenic |
| CAACCATTTGACCCTAATGA+TGG | 0.545080 | 1_1:+75600539 | Msa0044110:CDS |
| TGTTAAGTGCAGTGATGAAA+AGG | 0.547706 | 1_1:+75600985 | Msa0044110:CDS |
| CATAAGCCACAAACCTTGGA+AGG | 0.549282 | 1_1:-75600885 | None:intergenic |
| TCTTCATCGTGCTGTAGCGT+TGG | 0.552622 | 1_1:+75601009 | Msa0044110:CDS |
| TAGGGTCAAATGGTTGGTGA+TGG | 0.562396 | 1_1:-75600532 | None:intergenic |
| GTTTGTGGCTTATGTTCATG+GGG | 0.570855 | 1_1:+75600894 | Msa0044110:CDS |
| TCTTCATTCAAGAGATCACA+TGG | 0.573103 | 1_1:+75600739 | Msa0044110:CDS |
| CATCATTAGGGTCAAATGGT+TGG | 0.575638 | 1_1:-75600538 | None:intergenic |
| GATTTGCTCTGGCTTGCCTG+TGG | 0.582887 | 1_1:-75601212 | None:intergenic |
| GTATGTTTCACTGATGATGA+AGG | 0.586326 | 1_1:+75601126 | Msa0044110:CDS |
| AAGTTGTGGAGATGGTTGGA+AGG | 0.588161 | 1_1:-75600569 | None:intergenic |
| GACTAAGAAAGACAAAGCCA+TGG | 0.591309 | 1_1:-75600603 | None:intergenic |
| CAATGCCAAAAGATCACCAC+AGG | 0.593405 | 1_1:+75601196 | Msa0044110:CDS |
| GGTTGCTTTACGAAACTAGA+GGG | 0.605869 | 1_1:+75600950 | Msa0044110:CDS |
| TCAAATGGTTGGTGATGGAG+AGG | 0.619042 | 1_1:-75600527 | None:intergenic |
| AGGAGCTATGAAGAGTTCCA+TGG | 0.640804 | 1_1:-75600507 | None:intergenic |
| AAATTGTTGTGCAAATGCAA+TGG | 0.654608 | 1_1:-75600705 | None:intergenic |
| TGTTTCACTGATGATGAAGG+AGG | 0.670252 | 1_1:+75601129 | Msa0044110:CDS |
| AGGTTGCTTTACGAAACTAG+AGG | 0.685393 | 1_1:+75600949 | Msa0044110:CDS |
| CTTCATTCAAGAGATCACAT+GGG | 0.751652 | 1_1:+75600740 | Msa0044110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTCTATCAAGAATTA+TGG | - | chr1_1:75600642-75600661 | None:intergenic | 20.0% |
| !!! | TGATTTTCTATCAAGAATTA+TGG | - | chr1_1:75600642-75600661 | None:intergenic | 20.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | + | chr1_1:75600679-75600698 | Msa0044110:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | - | chr1_1:75600781-75600800 | None:intergenic | 25.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | + | chr1_1:75600679-75600698 | Msa0044110:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | - | chr1_1:75600781-75600800 | None:intergenic | 25.0% |
| ! | TTGCATTATTTTCATAGCCA+TGG | + | chr1_1:75600490-75600509 | Msa0044110:CDS | 30.0% |
| AAATTGTTGTGCAAATGCAA+TGG | - | chr1_1:75600708-75600727 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | + | chr1_1:75600808-75600827 | Msa0044110:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | + | chr1_1:75600809-75600828 | Msa0044110:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | + | chr1_1:75601091-75601110 | Msa0044110:CDS | 30.0% | |
| ! | TTGCATTATTTTCATAGCCA+TGG | + | chr1_1:75600490-75600509 | Msa0044110:CDS | 30.0% |
| AAATTGTTGTGCAAATGCAA+TGG | - | chr1_1:75600708-75600727 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | + | chr1_1:75600808-75600827 | Msa0044110:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | + | chr1_1:75600809-75600828 | Msa0044110:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | + | chr1_1:75601091-75601110 | Msa0044110:CDS | 30.0% | |
| AAGGAATGGTACCATCATTA+GGG | - | chr1_1:75600553-75600572 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | + | chr1_1:75600739-75600758 | Msa0044110:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | + | chr1_1:75600740-75600759 | Msa0044110:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | - | chr1_1:75600825-75600844 | None:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | - | chr1_1:75600826-75600845 | None:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | - | chr1_1:75600947-75600966 | None:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | + | chr1_1:75600985-75601004 | Msa0044110:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | + | chr1_1:75601078-75601097 | Msa0044110:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | - | chr1_1:75601086-75601105 | None:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | + | chr1_1:75601126-75601145 | Msa0044110:CDS | 35.0% |
| AAGGAATGGTACCATCATTA+GGG | - | chr1_1:75600553-75600572 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | + | chr1_1:75600739-75600758 | Msa0044110:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | + | chr1_1:75600740-75600759 | Msa0044110:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | - | chr1_1:75600825-75600844 | None:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | - | chr1_1:75600826-75600845 | None:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | - | chr1_1:75600947-75600966 | None:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | + | chr1_1:75600985-75601004 | Msa0044110:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | + | chr1_1:75601078-75601097 | Msa0044110:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | - | chr1_1:75601086-75601105 | None:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | + | chr1_1:75601126-75601145 | Msa0044110:CDS | 35.0% |
| CATCATTAGGGTCAAATGGT+TGG | - | chr1_1:75600541-75600560 | None:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | + | chr1_1:75600539-75600558 | Msa0044110:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | - | chr1_1:75600545-75600564 | None:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | - | chr1_1:75600554-75600573 | None:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | - | chr1_1:75600576-75600595 | None:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | - | chr1_1:75600580-75600599 | None:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | - | chr1_1:75600586-75600605 | None:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | + | chr1_1:75600586-75600605 | Msa0044110:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | - | chr1_1:75600606-75600625 | None:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | + | chr1_1:75600749-75600768 | Msa0044110:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | + | chr1_1:75600815-75600834 | Msa0044110:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | + | chr1_1:75600835-75600854 | Msa0044110:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | - | chr1_1:75600845-75600864 | None:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | + | chr1_1:75600872-75600891 | Msa0044110:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | - | chr1_1:75600892-75600911 | None:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | + | chr1_1:75600892-75600911 | Msa0044110:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | + | chr1_1:75600893-75600912 | Msa0044110:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | + | chr1_1:75600894-75600913 | Msa0044110:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTAG+AGG | + | chr1_1:75600949-75600968 | Msa0044110:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTAGA+GGG | + | chr1_1:75600950-75600969 | Msa0044110:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | chr1_1:75601029-75601048 | Msa0044110:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | + | chr1_1:75601040-75601059 | Msa0044110:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | + | chr1_1:75601129-75601148 | Msa0044110:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | + | chr1_1:75601148-75601167 | Msa0044110:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | - | chr1_1:75601197-75601216 | None:intergenic | 40.0% |
| CATCATTAGGGTCAAATGGT+TGG | - | chr1_1:75600541-75600560 | None:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | + | chr1_1:75600539-75600558 | Msa0044110:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | - | chr1_1:75600545-75600564 | None:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | - | chr1_1:75600554-75600573 | None:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | - | chr1_1:75600576-75600595 | None:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | - | chr1_1:75600580-75600599 | None:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | - | chr1_1:75600586-75600605 | None:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | + | chr1_1:75600586-75600605 | Msa0044110:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | - | chr1_1:75600606-75600625 | None:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | + | chr1_1:75600749-75600768 | Msa0044110:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | + | chr1_1:75600815-75600834 | Msa0044110:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | + | chr1_1:75600835-75600854 | Msa0044110:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | - | chr1_1:75600845-75600864 | None:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | + | chr1_1:75600872-75600891 | Msa0044110:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | - | chr1_1:75600892-75600911 | None:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | + | chr1_1:75600892-75600911 | Msa0044110:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | + | chr1_1:75600893-75600912 | Msa0044110:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | + | chr1_1:75600894-75600913 | Msa0044110:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTAG+AGG | + | chr1_1:75600949-75600968 | Msa0044110:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTAGA+GGG | + | chr1_1:75600950-75600969 | Msa0044110:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | chr1_1:75601029-75601048 | Msa0044110:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | + | chr1_1:75601040-75601059 | Msa0044110:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | + | chr1_1:75601129-75601148 | Msa0044110:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | + | chr1_1:75601148-75601167 | Msa0044110:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | - | chr1_1:75601197-75601216 | None:intergenic | 40.0% |
| AGGAGCTATGAAGAGTTCCA+TGG | - | chr1_1:75600510-75600529 | None:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | - | chr1_1:75600530-75600549 | None:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | - | chr1_1:75600535-75600554 | None:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | - | chr1_1:75600572-75600591 | None:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | + | chr1_1:75600879-75600898 | Msa0044110:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | - | chr1_1:75600888-75600907 | None:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | + | chr1_1:75600929-75600948 | Msa0044110:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | - | chr1_1:75600935-75600954 | None:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | - | chr1_1:75601198-75601217 | None:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | + | chr1_1:75601196-75601215 | Msa0044110:CDS | 45.0% | |
| AGGAGCTATGAAGAGTTCCA+TGG | - | chr1_1:75600510-75600529 | None:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | - | chr1_1:75600530-75600549 | None:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | - | chr1_1:75600535-75600554 | None:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | - | chr1_1:75600572-75600591 | None:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | + | chr1_1:75600879-75600898 | Msa0044110:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | - | chr1_1:75600888-75600907 | None:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | + | chr1_1:75600929-75600948 | Msa0044110:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | - | chr1_1:75600935-75600954 | None:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | - | chr1_1:75601198-75601217 | None:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | + | chr1_1:75601196-75601215 | Msa0044110:CDS | 45.0% | |
| GTGGAGATGGTTGGAAGGAA+TGG | - | chr1_1:75600567-75600586 | None:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | + | chr1_1:75600914-75600933 | Msa0044110:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | + | chr1_1:75601009-75601028 | Msa0044110:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | - | chr1_1:75601204-75601223 | None:intergenic | 50.0% |
| GTGGAGATGGTTGGAAGGAA+TGG | - | chr1_1:75600567-75600586 | None:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | + | chr1_1:75600914-75600933 | Msa0044110:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | + | chr1_1:75601009-75601028 | Msa0044110:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | - | chr1_1:75601204-75601223 | None:intergenic | 50.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | - | chr1_1:75601215-75601234 | None:intergenic | 55.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | - | chr1_1:75601215-75601234 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75600482 | 75601237 | 75600482 | ID=Msa0044110;Name=Msa0044110 |
| chr1_1 | mRNA | 75600482 | 75601237 | 75600482 | ID=Msa0044110-mRNA-1;Parent=Msa0044110;Name=Msa0044110-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|251 |
| chr1_1 | exon | 75600482 | 75601237 | 75600482 | ID=Msa0044110-mRNA-1:exon:25535;Parent=Msa0044110-mRNA-1 |
| chr1_1 | CDS | 75600482 | 75601237 | 75600482 | ID=Msa0044110-mRNA-1:cds;Parent=Msa0044110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
