AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046530 MtrunA17_Chr5g0401271 93.750 192 12 0 1 192 162 353 3.28e-133 377
Msa0046530 MtrunA17_Chr4g0054011 39.873 158 92 2 21 177 153 308 1.79e-33 121
Msa0046530 MtrunA17_Chr3g0134781 39.080 174 102 2 1 172 126 297 1.58e-29 110
Msa0046530 MtrunA17_Chr2g0323361 32.773 119 78 2 16 133 129 246 4.40e-14 68.9
Msa0046530 MtrunA17_Chr4g0041721 32.394 142 80 5 1 133 151 285 1.17e-13 68.2
Msa0046530 MtrunA17_Chr8g0364521 35.036 137 84 3 1 133 153 288 2.24e-13 67.4
Msa0046530 MtrunA17_Chr5g0414271 32.653 147 94 3 1 143 136 281 1.68e-12 64.7
Msa0046530 MtrunA17_Chr5g0412471 29.927 137 87 4 1 133 151 282 5.43e-12 63.5
Msa0046530 MtrunA17_Chr3g0133211 30.556 144 92 3 1 139 156 296 1.34e-11 62.4
Msa0046530 MtrunA17_Chr2g0280941 28.676 136 93 3 18 152 116 248 1.45e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046530 AT4G37630.1 31.343 201 117 6 1 191 133 322 4.60e-23 94.4
Msa0046530 AT4G37630.3 35.878 131 74 3 1 121 133 263 9.95e-16 73.6
Msa0046530 AT4G37630.2 35.878 131 74 3 1 121 131 261 1.08e-15 73.6
Msa0046530 AT5G67260.2 28.916 166 107 4 1 156 155 319 1.65e-14 71.2
Msa0046530 AT5G67260.1 28.916 166 107 4 1 156 155 319 1.77e-14 70.9
Msa0046530 AT1G70210.1 32.394 142 81 4 1 132 141 277 3.18e-14 70.1
Msa0046530 AT4G34160.1 30.370 135 89 3 1 131 146 279 2.86e-13 67.4
Msa0046530 AT2G22490.1 37.079 89 52 2 1 86 156 243 4.19e-12 64.3
Msa0046530 AT2G22490.2 37.079 89 52 2 1 86 156 243 4.32e-12 63.9
Msa0046530 AT5G65420.3 33.000 100 62 2 1 95 147 246 5.82e-12 63.5
Msa0046530 AT5G65420.1 33.000 100 62 2 1 95 137 236 6.73e-12 63.2
Msa0046530 AT5G65420.4 32.673 101 63 2 1 96 137 237 6.91e-12 63.2

Find 81 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTACTTTGGAATGGAAAA+TGG 0.144972 1_1:-78722699 Msa0046530:CDS
ATATCTGAATCTGTTTATTT+TGG 0.162137 1_1:-78723666 Msa0046530:five_prime_UTR
ATGAGACTAGACAAAGAAAA+AGG 0.230920 1_1:+78723459 None:intergenic
ATTCAGACACAGGCAAAATT+TGG 0.232001 1_1:-78723042 Msa0046530:intron
TTCTCAAATCGATATTCTAT+TGG 0.241729 1_1:+78722755 None:intergenic
ATTCAAGCAAAAGCTTATTC+TGG 0.285826 1_1:-78723213 Msa0046530:five_prime_UTR
TGATTCCACATTAACCAAAA+AGG 0.287348 1_1:-78722410 Msa0046530:CDS
TACAAGAAAATTAATTTGAT+TGG 0.298323 1_1:-78721985 Msa0046530:three_prime_UTR
ATAAACAGATTCAGATATAA+TGG 0.306266 1_1:+78723671 None:intergenic
CAAGAAACAGGACTTGGATT+TGG 0.320103 1_1:-78723292 Msa0046530:five_prime_UTR
TTGCATTGAGAATGGGAAAA+TGG 0.327073 1_1:-78721438 Msa0046530:three_prime_UTR
ACCAATTCATCACTTACTAT+TGG 0.335003 1_1:+78721686 None:intergenic
GGAAGTGTTTGGAGAGAGGT+TGG 0.336860 1_1:+78723574 None:intergenic
GCCAATAGTAAGTGATGAAT+TGG 0.338121 1_1:-78721687 Msa0046530:three_prime_UTR
GATAAATAGTAGGAAGTGTT+TGG 0.392172 1_1:+78723563 None:intergenic
CAAGTGACTACCAAGAAGAT+AGG 0.393148 1_1:-78721810 Msa0046530:three_prime_UTR
AGTACTTTGGAATGGAAAAT+GGG 0.395838 1_1:-78722698 Msa0046530:CDS
CTCGTTTGCATGCTATTGAT+TGG 0.395951 1_1:-78723180 Msa0046530:five_prime_UTR
TGCTTTCTATGAACTGAGAC+AGG 0.396932 1_1:-78721467 Msa0046530:three_prime_UTR
AATAATGTAAATAAGCAAAA+GGG 0.403818 1_1:+78722666 None:intergenic
TGATGGGTATGTGTAACAAT+TGG 0.410775 1_1:-78721403 Msa0046530:three_prime_UTR
AGTAGGAAGTGTTTGGAGAG+AGG 0.413686 1_1:+78723570 None:intergenic
ATTGGATTCTTATAGCCTAT+AGG 0.420765 1_1:-78721945 Msa0046530:three_prime_UTR
CTTCCTACTATTTATCACTT+AGG 0.422231 1_1:-78723556 Msa0046530:five_prime_UTR
TGAGTGGGAAGTTGCGGTTT+TGG 0.430187 1_1:+78723638 None:intergenic
TAAGAGAAAGCTTGGTTATG+AGG 0.430380 1_1:-78722099 Msa0046530:CDS
TCTTGATCCATTGCAGAACT+TGG 0.432680 1_1:+78722637 None:intergenic
AAATAATGTAAATAAGCAAA+AGG 0.437177 1_1:+78722665 None:intergenic
TAAACAGATTCAGATATAAT+GGG 0.441562 1_1:+78723672 None:intergenic
TATGCAGGAATCAAAACCTT+GGG 0.450693 1_1:-78722858 Msa0046530:intron
TATTTGTTCAAACAAGAAAC+AGG 0.453564 1_1:-78723304 Msa0046530:five_prime_UTR
GTATGTGTAACAATTGGGTT+GGG 0.454424 1_1:-78721397 Msa0046530:three_prime_UTR
GTGTTTATTTAATTGCTGAT+TGG 0.457605 1_1:-78721963 Msa0046530:three_prime_UTR
GGGTTGCATTGCATTGAGAA+TGG 0.459417 1_1:-78721446 Msa0046530:three_prime_UTR
GATGGGTATGTGTAACAATT+GGG 0.473636 1_1:-78721402 Msa0046530:three_prime_UTR
GGTTGCATTGCATTGAGAAT+GGG 0.483838 1_1:-78721445 Msa0046530:three_prime_UTR
GGCTATTCAATTGTTGTCAG+TGG 0.484737 1_1:-78722837 Msa0046530:five_prime_UTR
TTCTTCACCAAGTTCTGCAA+TGG 0.487684 1_1:-78722644 Msa0046530:CDS
AACAAATCTAATGCTTGTGC+AGG 0.488051 1_1:-78722125 Msa0046530:CDS
ATGTGTTAAGCTTACATCAA+TGG 0.491260 1_1:+78722957 None:intergenic
AGTGGATAGTAGTGAGTGAG+TGG 0.492301 1_1:+78723622 None:intergenic
GAACCTAAGTGATAAATAGT+AGG 0.494951 1_1:+78723553 None:intergenic
AGTGAGTGAGTGGGAAGTTG+CGG 0.495136 1_1:+78723632 None:intergenic
GCAGGAGTTAAGAGAAAGCT+TGG 0.497942 1_1:-78722107 Msa0046530:CDS
TTCAAACAAGAAACAGGACT+TGG 0.508140 1_1:-78723298 Msa0046530:five_prime_UTR
AAGTGACTACCAAGAAGATA+GGG 0.510638 1_1:-78721809 Msa0046530:three_prime_UTR
TTATGCAGGAATCAAAACCT+TGG 0.516551 1_1:-78722859 Msa0046530:intron
GGTATGTGTAACAATTGGGT+TGG 0.524563 1_1:-78721398 Msa0046530:three_prime_UTR
CATAGAAAGCAAAGCATCCC+AGG 0.530619 1_1:+78721479 None:intergenic
TTGATCGGTTTCTTTCAAAA+CGG 0.532451 1_1:-78722981 Msa0046530:five_prime_UTR
GTTGATAATAAATCCGATGA+AGG 0.534535 1_1:+78722179 None:intergenic
TGTAAATAAGCAAAAGGGGT+TGG 0.537019 1_1:+78722671 None:intergenic
ATCTTCTTCGAAGATGAGAG+TGG 0.541153 1_1:+78723416 None:intergenic
TTCATCATCCAAAGAAAACA+AGG 0.555381 1_1:+78723342 None:intergenic
ATATTACTACTACTTGCACC+TGG 0.555722 1_1:-78721497 Msa0046530:three_prime_UTR
CACACAACACATTGTGACAT+TGG 0.560171 1_1:-78722591 Msa0046530:CDS
TATAGAAGCAGATGCAATTG+TGG 0.569359 1_1:+78722444 None:intergenic
GTGGATAGTAGTGAGTGAGT+GGG 0.570794 1_1:+78723623 None:intergenic
TAAAAGCAAACACTATCACT+AGG 0.570917 1_1:+78721592 None:intergenic
GGTGTGATTAAGTGGAAGAG+TGG 0.572877 1_1:+78723604 None:intergenic
ATAATGTAAATAAGCAAAAG+GGG 0.575388 1_1:+78722667 None:intergenic
CTCAAAGTTAAGACTTGTCG+AGG 0.575523 1_1:+78723528 None:intergenic
AGTTAACAAGACACCTTCAT+CGG 0.576318 1_1:-78722192 Msa0046530:CDS
CACATTGTGACATTGGTCAA+AGG 0.589751 1_1:-78722584 Msa0046530:intron
ATTAGTTTAATCTCATCATG+TGG 0.597891 1_1:-78722373 Msa0046530:CDS
TATGTGTAACAATTGGGTTG+GGG 0.605492 1_1:-78721396 Msa0046530:three_prime_UTR
GAAGCAGATGCAATTGTGGA+TGG 0.605514 1_1:+78722448 None:intergenic
GACAACAATTGAATAGCCCA+AGG 0.617594 1_1:+78722842 None:intergenic
TTGAAAGTTCACAAGGATTG+TGG 0.621197 1_1:-78721660 Msa0046530:three_prime_UTR
TGGTTGATTGAAAGTTCACA+AGG 0.621427 1_1:-78721667 Msa0046530:three_prime_UTR
GCTTTCTATGAACTGAGACA+GGG 0.625680 1_1:-78721466 Msa0046530:three_prime_UTR
AAAAGCAAACACTATCACTA+GGG 0.634483 1_1:+78721593 None:intergenic
GAACAAAGTTATCAAGAACA+TGG 0.639484 1_1:-78722735 Msa0046530:CDS
TCTATTGGATACTCTGATAG+CGG 0.651753 1_1:+78722770 None:intergenic
TATTACTACTACTTGCACCT+GGG 0.657737 1_1:-78721496 Msa0046530:three_prime_UTR
TCATCATCCAAAGAAAACAA+GGG 0.658366 1_1:+78723343 None:intergenic
ATTGGATACTCTGATAGCGG+AGG 0.668359 1_1:+78722773 None:intergenic
AGTGACTACCAAGAAGATAG+GGG 0.671676 1_1:-78721808 Msa0046530:three_prime_UTR
CAATGTCACAATGTGTTGTG+TGG 0.680959 1_1:+78722592 None:intergenic
AAAGTTCACAAGGATTGTGG+TGG 0.698939 1_1:-78721657 Msa0046530:three_prime_UTR
AGTGAAAGATGTTACATGAG+TGG 0.705842 1_1:-78721631 Msa0046530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCAATTAATTATTTTGAT+CGG - chr1_1:78722074-78722093 Msa0046530:CDS 10.0%
!!! TAATTTAATTTATTTTATGC+AGG - chr1_1:78722197-78722216 Msa0046530:CDS 10.0%
!! AAAAGAAAGAAAAAAAAAAA+AGG - chr1_1:78723285-78723304 Msa0046530:five_prime_UTR 10.0%
!!! AAAAAACATTTTGATTAGTT+TGG + chr1_1:78721939-78721958 None:intergenic 15.0%
!! AATAATGTAAATAAGCAAAA+GGG + chr1_1:78722407-78722426 None:intergenic 15.0%
!! AAATAATGTAAATAAGCAAA+AGG + chr1_1:78722408-78722427 None:intergenic 15.0%
!! TAAAAATCACAAACTAATTA+AGG + chr1_1:78723063-78723082 None:intergenic 15.0%
!!! TACAAGAAAATTAATTTGAT+TGG - chr1_1:78723085-78723104 Msa0046530:intron 15.0%
!! TAAACAGATTCAGATATAAT+GGG + chr1_1:78721401-78721420 None:intergenic 20.0%
!! ATAAACAGATTCAGATATAA+TGG + chr1_1:78721402-78721421 None:intergenic 20.0%
!!! ATATCTGAATCTGTTTATTT+TGG - chr1_1:78721404-78721423 Msa0046530:three_prime_UTR 20.0%
!! ATAATGTAAATAAGCAAAAG+GGG + chr1_1:78722406-78722425 None:intergenic 20.0%
!! AGAAACAAAAAATATCCTAT+AGG + chr1_1:78723143-78723162 None:intergenic 20.0%
!!! ATTAATTATTTTGTTGTGAC+TGG - chr1_1:78723541-78723560 Msa0046530:five_prime_UTR 20.0%
! TTTGTTCCAAATCAAAAACA+TGG - chr1_1:78721571-78721590 Msa0046530:three_prime_UTR 25.0%
! TTGTTCCAAATCAAAAACAT+GGG - chr1_1:78721572-78721591 Msa0046530:three_prime_UTR 25.0%
! TATTTGTTCAAACAAGAAAC+AGG - chr1_1:78721766-78721785 Msa0046530:three_prime_UTR 25.0%
! ATAGCATAAAAAATGAGTGA+TGG + chr1_1:78721806-78721825 None:intergenic 25.0%
! AAAAACAATGAAAGAGGAAA+AGG + chr1_1:78721971-78721990 None:intergenic 25.0%
! ACAACAAAAAACAATGAAAG+AGG + chr1_1:78721977-78721996 None:intergenic 25.0%
! TTTATCAATTGCAGCAAAAA+TGG - chr1_1:78722260-78722279 Msa0046530:intron 25.0%
! TTCTCAAATCGATATTCTAT+TGG + chr1_1:78722318-78722337 None:intergenic 25.0%
!!! ACTTTTGATTTTGAGTACTT+TGG - chr1_1:78722359-78722378 Msa0046530:intron 25.0%
!!! AATTTCCTTTTTGGTTAATG+TGG + chr1_1:78722668-78722687 None:intergenic 25.0%
!! ATTAGTTTAATCTCATCATG+TGG - chr1_1:78722697-78722716 Msa0046530:CDS 25.0%
!!! TTGTTTTTGTTTTATGCAAC+AGG - chr1_1:78722806-78722825 Msa0046530:exon 25.0%
! GTGTTTATTTAATTGCTGAT+TGG - chr1_1:78723107-78723126 Msa0046530:intron 25.0%
! AAATCATTCCACAAAAATAG+TGG + chr1_1:78723203-78723222 None:intergenic 25.0%
!!! ACTATTTTTGTGGAATGATT+TGG - chr1_1:78723202-78723221 Msa0046530:five_prime_UTR 25.0%
!!! GCATAAACTTTTTTGTTGTT+GGG + chr1_1:78723241-78723260 None:intergenic 25.0%
!!! TGCATAAACTTTTTTGTTGT+TGG + chr1_1:78723242-78723261 None:intergenic 25.0%
!!! TCTGAATCTGTTTATTTTGG+CGG - chr1_1:78721407-78721426 Msa0046530:three_prime_UTR 30.0%
!! GATAAATAGTAGGAAGTGTT+TGG + chr1_1:78721510-78721529 None:intergenic 30.0%
CTTCCTACTATTTATCACTT+AGG - chr1_1:78721514-78721533 Msa0046530:three_prime_UTR 30.0%
GAACCTAAGTGATAAATAGT+AGG + chr1_1:78721520-78721539 None:intergenic 30.0%
TGTTCCAAATCAAAAACATG+GGG - chr1_1:78721573-78721592 Msa0046530:three_prime_UTR 30.0%
TGAGACTAGACAAAGAAAAA+GGG + chr1_1:78721613-78721632 None:intergenic 30.0%
ATGAGACTAGACAAAGAAAA+AGG + chr1_1:78721614-78721633 None:intergenic 30.0%
!!! ACAATAACCCTTGTTTTCTT+TGG - chr1_1:78721720-78721739 Msa0046530:three_prime_UTR 30.0%
TCATCATCCAAAGAAAACAA+GGG + chr1_1:78721730-78721749 None:intergenic 30.0%
TTCATCATCCAAAGAAAACA+AGG + chr1_1:78721731-78721750 None:intergenic 30.0%
ATTCAAGCAAAAGCTTATTC+TGG - chr1_1:78721857-78721876 Msa0046530:three_prime_UTR 30.0%
!! TTATTTGTTGATTCAGACAC+AGG - chr1_1:78722018-78722037 Msa0046530:three_prime_UTR 30.0%
! TTGATCGGTTTCTTTCAAAA+CGG - chr1_1:78722089-78722108 Msa0046530:CDS 30.0%
ATGTGTTAAGCTTACATCAA+TGG + chr1_1:78722116-78722135 None:intergenic 30.0%
GAACAAAGTTATCAAGAACA+TGG - chr1_1:78722335-78722354 Msa0046530:intron 30.0%
!! TGATTTTGAGTACTTTGGAA+TGG - chr1_1:78722364-78722383 Msa0046530:CDS 30.0%
!! AGTACTTTGGAATGGAAAAT+GGG - chr1_1:78722372-78722391 Msa0046530:CDS 30.0%
TGATTCCACATTAACCAAAA+AGG - chr1_1:78722660-78722679 Msa0046530:CDS 30.0%
CCAAAAAGGAAATTGATCTT+CGG - chr1_1:78722674-78722693 Msa0046530:CDS 30.0%
!! GTTGATAATAAATCCGATGA+AGG + chr1_1:78722894-78722913 None:intergenic 30.0%
GTTGATCCTCTCAAAAATTA+AGG + chr1_1:78723041-78723060 None:intergenic 30.0%
ATTGGATTCTTATAGCCTAT+AGG - chr1_1:78723125-78723144 Msa0046530:intron 30.0%
!!! AACATCATCCACTATTTTTG+TGG - chr1_1:78723192-78723211 Msa0046530:five_prime_UTR 30.0%
ACCAATTCATCACTTACTAT+TGG + chr1_1:78723387-78723406 None:intergenic 30.0%
AAAAGCAAACACTATCACTA+GGG + chr1_1:78723480-78723499 None:intergenic 30.0%
TAAAAGCAAACACTATCACT+AGG + chr1_1:78723481-78723500 None:intergenic 30.0%
! GATTTTGTGGTGTGATTAAG+TGG + chr1_1:78721477-78721496 None:intergenic 35.0%
GTTCCAAATCAAAAACATGG+GGG - chr1_1:78721574-78721593 Msa0046530:three_prime_UTR 35.0%
TTCCAAATCAAAAACATGGG+GGG - chr1_1:78721575-78721594 Msa0046530:three_prime_UTR 35.0%
GAGACTAGACAAAGAAAAAG+GGG + chr1_1:78721612-78721631 None:intergenic 35.0%
TTCAAACAAGAAACAGGACT+TGG - chr1_1:78721772-78721791 Msa0046530:three_prime_UTR 35.0%
ATTCAGACACAGGCAAAATT+TGG - chr1_1:78722028-78722047 Msa0046530:three_prime_UTR 35.0%
TTATGCAGGAATCAAAACCT+TGG - chr1_1:78722211-78722230 Msa0046530:CDS 35.0%
TATGCAGGAATCAAAACCTT+GGG - chr1_1:78722212-78722231 Msa0046530:CDS 35.0%
TCTATTGGATACTCTGATAG+CGG + chr1_1:78722303-78722322 None:intergenic 35.0%
!! GAGTACTTTGGAATGGAAAA+TGG - chr1_1:78722371-78722390 Msa0046530:CDS 35.0%
TGTAAATAAGCAAAAGGGGT+TGG + chr1_1:78722402-78722421 None:intergenic 35.0%
TATAGAAGCAGATGCAATTG+TGG + chr1_1:78722629-78722648 None:intergenic 35.0%
! CCGAAGATCAATTTCCTTTT+TGG + chr1_1:78722677-78722696 None:intergenic 35.0%
AGTTAACAAGACACCTTCAT+CGG - chr1_1:78722878-78722897 Msa0046530:intron 35.0%
AACAAATCTAATGCTTGTGC+AGG - chr1_1:78722945-78722964 Msa0046530:intron 35.0%
TAAGAGAAAGCTTGGTTATG+AGG - chr1_1:78722971-78722990 Msa0046530:intron 35.0%
! AACATTGAAGATTTTCCTCC+AGG - chr1_1:78722999-78723018 Msa0046530:five_prime_UTR 35.0%
!! CGTCAACCTTAATTTTTGAG+AGG - chr1_1:78723032-78723051 Msa0046530:five_prime_UTR 35.0%
AAGTGACTACCAAGAAGATA+GGG - chr1_1:78723261-78723280 Msa0046530:five_prime_UTR 35.0%
! TTTCTTTTCCCCTATCTTCT+TGG + chr1_1:78723273-78723292 None:intergenic 35.0%
GCCAATAGTAAGTGATGAAT+TGG - chr1_1:78723383-78723402 Msa0046530:five_prime_UTR 35.0%
TGGTTGATTGAAAGTTCACA+AGG - chr1_1:78723403-78723422 Msa0046530:five_prime_UTR 35.0%
TTGAAAGTTCACAAGGATTG+TGG - chr1_1:78723410-78723429 Msa0046530:five_prime_UTR 35.0%
AGTGAAAGATGTTACATGAG+TGG - chr1_1:78723439-78723458 Msa0046530:five_prime_UTR 35.0%
ATATTACTACTACTTGCACC+TGG - chr1_1:78723573-78723592 Msa0046530:five_prime_UTR 35.0%
TATTACTACTACTTGCACCT+GGG - chr1_1:78723574-78723593 Msa0046530:five_prime_UTR 35.0%
TTGCATTGAGAATGGGAAAA+TGG - chr1_1:78723632-78723651 Msa0046530:five_prime_UTR 35.0%
!!! AATGGTTTTGTGCGATTTGA+TGG - chr1_1:78723650-78723669 Msa0046530:five_prime_UTR 35.0%
!!! ATGGTTTTGTGCGATTTGAT+GGG - chr1_1:78723651-78723670 Msa0046530:five_prime_UTR 35.0%
! TGATGGGTATGTGTAACAAT+TGG - chr1_1:78723667-78723686 Msa0046530:five_prime_UTR 35.0%
GATGGGTATGTGTAACAATT+GGG - chr1_1:78723668-78723687 Msa0046530:five_prime_UTR 35.0%
GTATGTGTAACAATTGGGTT+GGG - chr1_1:78723673-78723692 Msa0046530:five_prime_UTR 35.0%
CTCAAAGTTAAGACTTGTCG+AGG + chr1_1:78721545-78721564 None:intergenic 40.0%
ATCTTCTTCGAAGATGAGAG+TGG + chr1_1:78721657-78721676 None:intergenic 40.0%
CAAGAAACAGGACTTGGATT+TGG - chr1_1:78721778-78721797 Msa0046530:three_prime_UTR 40.0%
CTCGTTTGCATGCTATTGAT+TGG - chr1_1:78721890-78721909 Msa0046530:three_prime_UTR 40.0%
GACAACAATTGAATAGCCCA+AGG + chr1_1:78722231-78722250 None:intergenic 40.0%
GGCTATTCAATTGTTGTCAG+TGG - chr1_1:78722233-78722252 Msa0046530:CDS 40.0%
TTCTTCACCAAGTTCTGCAA+TGG - chr1_1:78722426-78722445 Msa0046530:CDS 40.0%
TCTTGATCCATTGCAGAACT+TGG + chr1_1:78722436-78722455 None:intergenic 40.0%
CAATGTCACAATGTGTTGTG+TGG + chr1_1:78722481-78722500 None:intergenic 40.0%
CACACAACACATTGTGACAT+TGG - chr1_1:78722479-78722498 Msa0046530:intron 40.0%
CACATTGTGACATTGGTCAA+AGG - chr1_1:78722486-78722505 Msa0046530:intron 40.0%
! GTTTTCAACAACAACACTCG+TGG + chr1_1:78722928-78722947 None:intergenic 40.0%
CAAGTGACTACCAAGAAGAT+AGG - chr1_1:78723260-78723279 Msa0046530:five_prime_UTR 40.0%
AGTGACTACCAAGAAGATAG+GGG - chr1_1:78723262-78723281 Msa0046530:five_prime_UTR 40.0%
AAAGTTCACAAGGATTGTGG+TGG - chr1_1:78723413-78723432 Msa0046530:five_prime_UTR 40.0%
TGCTTTCTATGAACTGAGAC+AGG - chr1_1:78723603-78723622 Msa0046530:five_prime_UTR 40.0%
GCTTTCTATGAACTGAGACA+GGG - chr1_1:78723604-78723623 Msa0046530:five_prime_UTR 40.0%
GGTTGCATTGCATTGAGAAT+GGG - chr1_1:78723625-78723644 Msa0046530:five_prime_UTR 40.0%
GGTATGTGTAACAATTGGGT+TGG - chr1_1:78723672-78723691 Msa0046530:five_prime_UTR 40.0%
GTGGATAGTAGTGAGTGAGT+GGG + chr1_1:78721450-78721469 None:intergenic 45.0%
AGTGGATAGTAGTGAGTGAG+TGG + chr1_1:78721451-78721470 None:intergenic 45.0%
GGTGTGATTAAGTGGAAGAG+TGG + chr1_1:78721469-78721488 None:intergenic 45.0%
! TGGAGAGAGGTTGGATTTTG+TGG + chr1_1:78721490-78721509 None:intergenic 45.0%
!! AGTAGGAAGTGTTTGGAGAG+AGG + chr1_1:78721503-78721522 None:intergenic 45.0%
!! AGCCCCCCATGTTTTTGATT+TGG + chr1_1:78721580-78721599 None:intergenic 45.0%
AAAAACATGGGGGGCTATGT+TGG - chr1_1:78721584-78721603 Msa0046530:three_prime_UTR 45.0%
!! ATTGGATACTCTGATAGCGG+AGG + chr1_1:78722300-78722319 None:intergenic 45.0%
GAAGCAGATGCAATTGTGGA+TGG + chr1_1:78722625-78722644 None:intergenic 45.0%
GCAGGAGTTAAGAGAAAGCT+TGG - chr1_1:78722963-78722982 Msa0046530:intron 45.0%
! CATAGAAAGCAAAGCATCCC+AGG + chr1_1:78723594-78723613 None:intergenic 45.0%
GGGTTGCATTGCATTGAGAA+TGG - chr1_1:78723624-78723643 Msa0046530:five_prime_UTR 45.0%
!!! TTTCATTTATTTATTTTTTT+TGG + chr1_1:78723342-78723361 None:intergenic 5.0%
! TGAGTGGGAAGTTGCGGTTT+TGG + chr1_1:78721435-78721454 None:intergenic 50.0%
AGTGAGTGAGTGGGAAGTTG+CGG + chr1_1:78721441-78721460 None:intergenic 50.0%
!! GGAAGTGTTTGGAGAGAGGT+TGG + chr1_1:78721499-78721518 None:intergenic 50.0%
! TGACGTAGCTTTTGTCCTGG+AGG + chr1_1:78723017-78723036 None:intergenic 50.0%
! GGTTGACGTAGCTTTTGTCC+TGG + chr1_1:78723020-78723039 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78721396 78723696 78721396 ID=Msa0046530;Name=Msa0046530
chr1_1 mRNA 78721396 78723696 78721396 ID=Msa0046530-mRNA-1;Parent=Msa0046530;Name=Msa0046530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=673|1|1|1|1|1|5|653|192
chr1_1 exon 78721396 78722264 78721396 ID=Msa0046530-mRNA-1:exon:27111;Parent=Msa0046530-mRNA-1
chr1_1 exon 78722360 78722493 78722360 ID=Msa0046530-mRNA-1:exon:27110;Parent=Msa0046530-mRNA-1
chr1_1 exon 78722585 78722873 78722585 ID=Msa0046530-mRNA-1:exon:27109;Parent=Msa0046530-mRNA-1
chr1_1 exon 78722972 78723058 78722972 ID=Msa0046530-mRNA-1:exon:27108;Parent=Msa0046530-mRNA-1
chr1_1 exon 78723171 78723696 78723171 ID=Msa0046530-mRNA-1:exon:27107;Parent=Msa0046530-mRNA-1
chr1_1 five_prime_UTR 78723171 78723696 78723171 ID=Msa0046530-mRNA-1:five_prime_utr;Parent=Msa0046530-mRNA-1
chr1_1 five_prime_UTR 78722972 78723058 78722972 ID=Msa0046530-mRNA-1:five_prime_utr;Parent=Msa0046530-mRNA-1
chr1_1 five_prime_UTR 78722814 78722873 78722814 ID=Msa0046530-mRNA-1:five_prime_utr;Parent=Msa0046530-mRNA-1
chr1_1 CDS 78722585 78722813 78722585 ID=Msa0046530-mRNA-1:cds;Parent=Msa0046530-mRNA-1
chr1_1 CDS 78722360 78722493 78722360 ID=Msa0046530-mRNA-1:cds;Parent=Msa0046530-mRNA-1
chr1_1 CDS 78722049 78722264 78722049 ID=Msa0046530-mRNA-1:cds;Parent=Msa0046530-mRNA-1
chr1_1 three_prime_UTR 78721396 78722048 78721396 ID=Msa0046530-mRNA-1:three_prime_utr;Parent=Msa0046530-mRNA-1
Gene Sequence

>Msa0046530

ATGGAAGAACAAAGTGTTCCTCCGCTATCAGAGTATCCAATAGAATATCGATTTGAGAACAAAGTTATCAAGAACATGGAACTTTTGATTTTGAGTACTTTGGAATGGAAAATGGGATTACCAACCCCTTTTGCTTATTTACATTATTTCTTCACCAAGTTCTGCAATGGATCAAGATCAGAAATAATAATCACAAAAGCCACACAACACATTGTGACATTGGTCAAAGATTTTAATTTGATGAATCAACGACCATCCACAATTGCATCTGCTTCTATACTAGCAGCTTTTGATTCCACATTAACCAAAAAGGAAATTGATCTTCGGATTAGTTTAATCTCATCATGTGGAAATCTAGAAAATGAGCATGTATTTTCATGTTACAATGTTATACAAGAAAAGATGAGAAACAAAGTTAACAAGACACCTTCATCGGATTTATTATCAACAGAATCAAATTCCACGAGTGTTGTTGTTGAAAACAAATCTAATGCTTGTGCAGGAGTTAAGAGAAAGCTTGGTTATGAGGACATAAACATTGAAGATTTTCCTCCAGGACAAAAGCTACGTCAACCTTAA
Protein sequence

>Msa0046530

MEEQSVPPLSEYPIEYRFENKVIKNMELLILSTLEWKMGLPTPFAYLHYFFTKFCNGSRSEIIITKATQHIVTLVKDFNLMNQRPSTIASASILAAFDSTLTKKEIDLRISLISSCGNLENEHVFSCYNVIQEKMRNKVNKTPSSDLLSTESNSTSVVVENKSNACAGVKRKLGYEDINIEDFPPGQKLRQP*