AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046650 MtrunA17_Chr3g0113911 97.481 516 10 2 1 513 1 516 0.0 1030
Msa0046650 MtrunA17_Chr5g0437431 75.208 480 114 1 33 512 43 517 0.0 752
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046650 AT5G05520.1 54.064 529 222 5 1 513 1 524 0.0 602
Msa0046650 AT3G11070.1 56.688 471 194 1 43 513 60 520 0.0 590

Find 165 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATAGTGATTCCTCTAAA+TGG 0.189239 1_1:+78925098 Msa0046650:CDS
TCTTTGGGTTTGGGATTGTT+AGG 0.197930 1_1:-78922193 None:intergenic
TGATCTATGGGATGCTTCTT+TGG 0.223236 1_1:+78923602 Msa0046650:CDS
GTGTTCGTTGACTTCTTCTT+TGG 0.226246 1_1:-78922209 None:intergenic
GCTCGGTATGCTGTCCCTTT+TGG 0.238607 1_1:+78924851 Msa0046650:CDS
GAGGCTGCTAGTAGAGTTTC+TGG 0.248065 1_1:+78922583 Msa0046650:CDS
TGTTAGGTTATGGTGATCTA+TGG 0.249561 1_1:+78923589 Msa0046650:CDS
TTCCATGATTCGATCGGTTT+TGG 0.250678 1_1:-78922158 None:intergenic
CCACCCAAATAAAACCTTTC+AGG 0.256091 1_1:-78924962 None:intergenic
GTTGACTTCTTCTTTGGGTT+TGG 0.264225 1_1:-78922203 None:intergenic
TTATATGCCCCTCGACTTAA+AGG 0.269154 1_1:+78923663 Msa0046650:CDS
TTGACTTCTTCTTTGGGTTT+GGG 0.272463 1_1:-78922202 None:intergenic
TGTTCTCTTAACCACCTAAT+TGG 0.273803 1_1:-78925178 None:intergenic
CATGATTTGACATACACTTT+TGG 0.284832 1_1:+78923801 Msa0046650:CDS
AGTAGAGTTTCTGGTGAATT+TGG 0.297479 1_1:+78922592 Msa0046650:CDS
AAAAGGCATAGTTTCAGATT+TGG 0.299452 1_1:+78926048 Msa0046650:three_prime_UTR
AACCGCAAGCTTCGATTATC+TGG 0.301046 1_1:-78923999 None:intergenic
AAAGGCATAGTTTCAGATTT+GGG 0.305577 1_1:+78926049 Msa0046650:three_prime_UTR
CTGATGTTCGGAAGGATTCT+AGG 0.315988 1_1:-78925288 None:intergenic
AGCTTCGATCACCCAATCTT+TGG 0.327746 1_1:-78922392 None:intergenic
GGATTTAAAACTAGGGGATT+AGG 0.345578 1_1:+78925031 Msa0046650:CDS
ACAACAACATTTGCAGTATT+CGG 0.355360 1_1:-78922550 None:intergenic
CATTGTGGGGATTTAAAACT+AGG 0.357914 1_1:+78925023 Msa0046650:CDS
ACATCTCTGCTTTGTCTTCG+TGG 0.360532 1_1:-78925064 None:intergenic
AAGCTTGCGGTTTCTGCGTC+AGG 0.360829 1_1:+78924010 Msa0046650:CDS
AAGAAAACTCCTGCCAATCT+TGG 0.365590 1_1:-78923725 None:intergenic
TGTTCGTTGACTTCTTCTTT+GGG 0.368153 1_1:-78922208 None:intergenic
CAATTGTTGGGCATGTCTCT+TGG 0.368458 1_1:+78923759 Msa0046650:CDS
CTTTGTCTTCGTGGTTCAGC+AGG 0.377794 1_1:-78925055 None:intergenic
AGTATACGTTTAAAATTGAT+AGG 0.379846 1_1:+78923907 Msa0046650:CDS
CTTTGGGTTTGGGATTGTTA+GGG 0.381221 1_1:-78922192 None:intergenic
CTCAGCTCCTTCATAGAGGC+TGG 0.381857 1_1:+78925902 Msa0046650:exon
TCCAATGGAGTCCCATTTAG+AGG 0.384650 1_1:-78925110 None:intergenic
CACTCATTTACTGCTACATA+TGG 0.393787 1_1:+78926170 Msa0046650:three_prime_UTR
TGGGATGCTTCTTTGGCTTA+CGG 0.394407 1_1:+78923609 Msa0046650:CDS
TTCTCTCCAGTTTGTACCCT+AGG 0.403753 1_1:+78924989 Msa0046650:CDS
ATAGGAGAAACTCACCAATT+AGG 0.405028 1_1:+78923925 Msa0046650:CDS
CATATGGAGAGGCCTCAATT+TGG 0.410346 1_1:+78926186 Msa0046650:three_prime_UTR
TTGCTAGGCTTCAGAGTCTC+GGG 0.417082 1_1:+78922479 Msa0046650:CDS
CCGATGAAAGGCGTCGGGAT+AGG 0.422946 1_1:-78922318 None:intergenic
TTAAATCCCCACAATGTCAT+TGG 0.425826 1_1:-78925016 None:intergenic
TGTCCATGCTTTCCCAAGAT+TGG 0.427354 1_1:+78923712 Msa0046650:CDS
GGTTTGGGATTGTTAGGGTT+TGG 0.432140 1_1:-78922187 None:intergenic
GCATGACCTCAATCAATGTT+AGG 0.432768 1_1:-78926258 None:intergenic
TTCGTACAAAGAGCAATTGT+TGG 0.435947 1_1:+78923746 Msa0046650:CDS
CTTGCTAGGCTTCAGAGTCT+CGG 0.437183 1_1:+78922478 Msa0046650:CDS
GCAACACGAAAACCAAAGAT+TGG 0.443283 1_1:+78922380 Msa0046650:CDS
CAATAGTGATTCCTCTAAAT+GGG 0.445365 1_1:+78925099 Msa0046650:CDS
TTCGGCAACTCGACCGGTCC+AGG 0.445531 1_1:-78922532 None:intergenic
CTACACTCACCTCTGTTGCT+TGG 0.445903 1_1:-78923638 None:intergenic
CATCCGAGATTGTGCTTGCT+AGG 0.450714 1_1:+78922464 Msa0046650:CDS
CATTTGCAATGGATCCGTTA+AGG 0.452833 1_1:-78923832 None:intergenic
CAGTGTACATGTATGTTTGA+TGG 0.455557 1_1:+78926298 Msa0046650:three_prime_UTR
GCTGTATTATAAAACCCAAA+AGG 0.458909 1_1:-78924866 None:intergenic
AGAAAACTCCTGCCAATCTT+GGG 0.459151 1_1:-78923724 None:intergenic
CATGCTTTCCCAAGATTGGC+AGG 0.461246 1_1:+78923716 Msa0046650:CDS
ACATTGTTGCTCTCTGTCAC+TGG 0.471751 1_1:+78925972 Msa0046650:three_prime_UTR
ATGGACAGCCGTGCTACAAC+CGG 0.474311 1_1:-78923696 None:intergenic
CGATGAAAGGCGTCGGGATA+GGG 0.480574 1_1:-78922317 None:intergenic
ATCCACATCCCACTGATGTT+CGG 0.481015 1_1:-78925300 None:intergenic
TTCCAAAACCGATCGAATCA+TGG 0.481923 1_1:+78922156 Msa0046650:exon
TCGTACAAAGAGCAATTGTT+GGG 0.482119 1_1:+78923747 Msa0046650:CDS
GTTTCTACCACTCACCTTGG+TGG 0.482346 1_1:+78923969 Msa0046650:CDS
ACTTAAAGGAACTTCAAATC+CGG 0.491348 1_1:+78923677 Msa0046650:CDS
CAAAAGTGTATGTCAAATCA+TGG 0.491601 1_1:-78923800 None:intergenic
AACCTTTCAGGAAGGGGAGA+TGG 0.491715 1_1:-78924950 None:intergenic
GGTCTGTAAGAAGGCAGCTT+GGG 0.496347 1_1:+78923862 Msa0046650:CDS
GGTCCTCCTAGGGTACAAAC+TGG 0.501371 1_1:-78924995 None:intergenic
ACAATGTCATTGGTCCTCCT+AGG 0.504133 1_1:-78925006 None:intergenic
CCAGACTGAAAATTAAGAAA+AGG 0.506059 1_1:+78926031 Msa0046650:three_prime_UTR
GCAGTATTCGGCAACTCGAC+CGG 0.506121 1_1:-78922538 None:intergenic
GGTCGCGGAGACGGGAAAGT+GGG 0.508908 1_1:-78922276 None:intergenic
ATCACGTCGTGAACTCGGAT+TGG 0.510102 1_1:-78922349 None:intergenic
GAATTATCACGTCGTGAACT+CGG 0.510718 1_1:-78922354 None:intergenic
CAACACGAAAACCAAAGATT+GGG 0.512740 1_1:+78922381 Msa0046650:CDS
ATCCATTGCAAATGGCATCC+AGG 0.513779 1_1:+78923841 Msa0046650:CDS
TCCTCTAAATGGGACTCCAT+TGG 0.521104 1_1:+78925109 Msa0046650:CDS
TTTGTTTCTACCACTCACCT+TGG 0.527296 1_1:+78923966 Msa0046650:CDS
TCTAGGCGGAAAAGACTAGT+AGG 0.527338 1_1:-78925331 None:intergenic
TCACCAATTAGGCCCACAAA+AGG 0.527965 1_1:+78923936 Msa0046650:CDS
AATATAAGCACTTCTCTCCT+CGG 0.528523 1_1:+78925260 Msa0046650:CDS
CTGTATTATAAAACCCAAAA+GGG 0.529697 1_1:-78924865 None:intergenic
ATAATACAGCACTGAACCTA+GGG 0.530622 1_1:+78924879 Msa0046650:CDS
TTGGAACTAGCTCCGATGAA+AGG 0.530663 1_1:-78922330 None:intergenic
TAGCTCCGATGAAAGGCGTC+GGG 0.530901 1_1:-78922323 None:intergenic
AGCTTCGATTATCTGGTGTA+AGG 0.532681 1_1:-78923992 None:intergenic
TTGCAGACTAGTTCTTGGAC+TGG 0.533983 1_1:+78923540 Msa0046650:intron
GTGATCGAAGCTGAACTTGA+GGG 0.537107 1_1:+78922403 Msa0046650:CDS
TGGTCGCGGAGACGGGAAAG+TGG 0.538878 1_1:-78922277 None:intergenic
CGATGCTCATTGCATGGCTG+AGG 0.539638 1_1:+78926125 Msa0046650:three_prime_UTR
CTTAACGGATCCATTGCAAA+TGG 0.540593 1_1:+78923833 Msa0046650:CDS
CTGCCAATCTTGGGAAAGCA+TGG 0.541220 1_1:-78923715 None:intergenic
AAATAAAACCTTTCAGGAAG+GGG 0.541476 1_1:-78924956 None:intergenic
GAGTTCTCAATGCCAAATTG+AGG 0.542459 1_1:-78926198 None:intergenic
TTCCGAACATCAGTGGGATG+TGG 0.543494 1_1:+78925298 Msa0046650:CDS
CCAAATAAAACCTTTCAGGA+AGG 0.546745 1_1:-78924958 None:intergenic
TTGAAGTTCCTTTAAGTCGA+GGG 0.547500 1_1:-78923671 None:intergenic
AGCCATCTCCCCTTCCTGAA+AGG 0.547766 1_1:+78924948 Msa0046650:CDS
AGTAAGATTAGTCTTGAGCC+TGG 0.548788 1_1:+78922514 Msa0046650:CDS
CAATGTCATTGGTCCTCCTA+GGG 0.549092 1_1:-78925005 None:intergenic
AGGAGGACCAATGACATTGT+GGG 0.550019 1_1:+78925009 Msa0046650:CDS
CTCAGCCATGCAATGAGCAT+CGG 0.550287 1_1:-78926124 None:intergenic
ATAACTCCTAACATTGATTG+AGG 0.550432 1_1:+78926252 Msa0046650:three_prime_UTR
AAGCAACAGAGGTGAGTGTA+GGG 0.550569 1_1:+78923640 Msa0046650:CDS
GCTTCTCAGCTCCTTCATAG+AGG 0.551247 1_1:+78925898 Msa0046650:CDS
AAGCCTAGCAAGCACAATCT+CGG 0.551318 1_1:-78922467 None:intergenic
TATAATACAGCACTGAACCT+AGG 0.553078 1_1:+78924878 Msa0046650:CDS
TCTAAATGGGACTCCATTGG+AGG 0.553806 1_1:+78925112 Msa0046650:CDS
TGTCAAACCAGCCTCTATGA+AGG 0.556562 1_1:-78925909 None:intergenic
TGGCATCCAGGTCTGTAAGA+AGG 0.556584 1_1:+78923853 Msa0046650:CDS
GTAAGAAGGCAGCTTGGGCA+CGG 0.557992 1_1:+78923867 Msa0046650:CDS
CCTATCCCGACGCCTTTCAT+CGG 0.558357 1_1:+78922318 Msa0046650:CDS
AGGTCTGTAAGAAGGCAGCT+TGG 0.562674 1_1:+78923861 Msa0046650:CDS
TTAAGAGAACACGGGGTCCA+TGG 0.563830 1_1:+78925190 Msa0046650:CDS
GTTAGGTTATGGTGATCTAT+GGG 0.565546 1_1:+78923590 Msa0046650:CDS
GATTAGTCTTGAGCCTGGAC+CGG 0.565735 1_1:+78922519 Msa0046650:CDS
TAGGAGGACCAATGACATTG+TGG 0.567117 1_1:+78925008 Msa0046650:CDS
TGTTGCTCTCTGTCACTGGA+TGG 0.567596 1_1:+78925976 Msa0046650:three_prime_UTR
GACCTGGATGCCATTTGCAA+TGG 0.568326 1_1:-78923843 None:intergenic
ATTGTGGGGATTTAAAACTA+GGG 0.569370 1_1:+78925024 Msa0046650:CDS
CAAATAAAACCTTTCAGGAA+GGG 0.576531 1_1:-78924957 None:intergenic
TTCTTGTTGTGAGATGAAAG+TGG 0.580234 1_1:-78922131 None:intergenic
CTTCAAATCCGGTTGTAGCA+CGG 0.581873 1_1:+78923688 Msa0046650:CDS
AAGCTGCCTTCTTACAGACC+TGG 0.583945 1_1:-78923859 None:intergenic
GTTCACGACGTGATAATTCG+CGG 0.584170 1_1:+78922358 Msa0046650:CDS
AGTGTACATGTATGTTTGAT+GGG 0.585726 1_1:+78926299 Msa0046650:three_prime_UTR
TTTGAAGTTCCTTTAAGTCG+AGG 0.587862 1_1:-78923672 None:intergenic
TAGCACCAGCAGAAATCCCT+AGG 0.590152 1_1:-78924895 None:intergenic
TCTCCAGTTTGTACCCTAGG+AGG 0.590588 1_1:+78924992 Msa0046650:CDS
AGACGGGAAAGTGGGGATTG+TGG 0.590641 1_1:-78922268 None:intergenic
CTGAACCTAGGGATTTCTGC+TGG 0.592714 1_1:+78924890 Msa0046650:CDS
CAAGCAACAGAGGTGAGTGT+AGG 0.593637 1_1:+78923639 Msa0046650:CDS
AACAGAAAGATCTCCTCCAA+TGG 0.594114 1_1:-78925125 None:intergenic
AAGGCATAGTTTCAGATTTG+GGG 0.594960 1_1:+78926050 Msa0046650:three_prime_UTR
CTAGCTCCGATGAAAGGCGT+CGG 0.599493 1_1:-78922324 None:intergenic
GAATCCTTCCGAACATCAGT+GGG 0.600335 1_1:+78925292 Msa0046650:CDS
GGTGATCGAAGCTGAACTTG+AGG 0.602570 1_1:+78922402 Msa0046650:CDS
GTCGCGGAGACGGGAAAGTG+GGG 0.602663 1_1:-78922275 None:intergenic
TGCACGAATAAGCTCTTGCA+TGG 0.603292 1_1:-78922443 None:intergenic
ACTAGTTCTTGGACTGGTGA+AGG 0.604081 1_1:+78923546 Msa0046650:CDS
TGTTGTTGTTGATATTGTTG+AGG 0.604313 1_1:+78922564 Msa0046650:CDS
AGAATCCTTCCGAACATCAG+TGG 0.606055 1_1:+78925291 Msa0046650:CDS
CACCAGATAATCGAAGCTTG+CGG 0.608933 1_1:+78923997 Msa0046650:CDS
TTGTGGGGATTTAAAACTAG+GGG 0.611302 1_1:+78925025 Msa0046650:CDS
TTATGTAGGAGTTTGATGCT+CGG 0.614579 1_1:+78924834 Msa0046650:intron
ACATCCCACTGATGTTCGGA+AGG 0.615809 1_1:-78925296 None:intergenic
TTCATGAAACCATGTCCCCA+TGG 0.620157 1_1:-78924923 None:intergenic
ATTAGGTGGTTAAGAGAACA+CGG 0.628876 1_1:+78925181 Msa0046650:CDS
TGAAGTTCCTTTAAGTCGAG+GGG 0.631807 1_1:-78923670 None:intergenic
TGCTAGGCTTCAGAGTCTCG+GGG 0.635479 1_1:+78922480 Msa0046650:CDS
GGAGGACCAATGACATTGTG+GGG 0.639686 1_1:+78925010 Msa0046650:CDS
CGGTGCAAACCAAGCAACAG+AGG 0.652119 1_1:+78923629 Msa0046650:CDS
TGTAAGGCCACCAAGGTGAG+TGG 0.658835 1_1:-78923976 None:intergenic
TGTAGCCGATGCTCATTGCA+TGG 0.660775 1_1:+78926119 Msa0046650:three_prime_UTR
ACGAATAAGCTCTTGCATGG+TGG 0.668142 1_1:-78922440 None:intergenic
TTAGGTGGTTAAGAGAACAC+GGG 0.671279 1_1:+78925182 Msa0046650:CDS
TATCTGGTGTAAGGCCACCA+AGG 0.677955 1_1:-78923983 None:intergenic
TAATTGGAAGATCAAAAGAG+AGG 0.678609 1_1:-78925162 None:intergenic
ATTTACTGCTACATATGGAG+AGG 0.683938 1_1:+78926175 Msa0046650:three_prime_UTR
ATAAGCACTTCTCTCCTCGG+AGG 0.704080 1_1:+78925263 Msa0046650:CDS
AAGGATTCTAGGAACCTCCG+AGG 0.715500 1_1:-78925277 None:intergenic
AAGCAGACTGAACATGATCG+TGG 0.717200 1_1:+78925855 Msa0046650:CDS
AGCATAAGCTAACCTCTAGG+CGG 0.717256 1_1:-78925345 None:intergenic
TGGTGTTTATACCAAACCCG+CGG 0.722289 1_1:+78922612 Msa0046650:CDS
TAGGTGGTTAAGAGAACACG+GGG 0.754945 1_1:+78925183 Msa0046650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTAATACAAAAAATTATT+AGG - chr1_1:78923082-78923101 None:intergenic 10.0%
!!! TTTTGTGAATAATATTAATT+AGG + chr1_1:78924195-78924214 Msa0046650:intron 10.0%
!! CAATTTCTTTATATTTAATT+AGG + chr1_1:78925369-78925388 Msa0046650:intron 10.0%
!!! ATTTAGTCTTAATTTATATT+TGG + chr1_1:78925471-78925490 Msa0046650:intron 10.0%
!!! TTTTTTTGTTGATATTTTTC+TGG + chr1_1:78924792-78924811 Msa0046650:intron 15.0%
!! TTAATTTATATTTGGACTTT+GGG + chr1_1:78925479-78925498 Msa0046650:intron 15.0%
!!! GATTTTTGTTCTAATAATTT+AGG + chr1_1:78925661-78925680 Msa0046650:intron 15.0%
!!! TTGTTGATGAATCATTTATT+AGG + chr1_1:78922654-78922673 Msa0046650:intron 20.0%
!! TTCTATCATAAACCATATTT+CGG - chr1_1:78922792-78922811 None:intergenic 20.0%
!!! TCTGCATTAATTTTTTAGAA+AGG + chr1_1:78922861-78922880 Msa0046650:intron 20.0%
!!! CTGCATTAATTTTTTAGAAA+GGG + chr1_1:78922862-78922881 Msa0046650:intron 20.0%
!!! CTGCTAATATTTTTTCAATT+TGG + chr1_1:78923501-78923520 Msa0046650:intron 20.0%
!!! ATTAAGTACAAAAACTTGTT+AGG + chr1_1:78923573-78923592 Msa0046650:CDS 20.0%
!!! AGTATACGTTTAAAATTGAT+AGG + chr1_1:78923907-78923926 Msa0046650:CDS 20.0%
!! TTAACTTAAAGAACAACAAT+AGG - chr1_1:78924047-78924066 None:intergenic 20.0%
!!! ACGTCATTAAATTTTCATAT+TGG + chr1_1:78924359-78924378 Msa0046650:intron 20.0%
!!! AAGCTAACATTTTTTGTTTT+AGG + chr1_1:78925401-78925420 Msa0046650:intron 20.0%
!!! ACATTTTTTGTTTTAGGTTT+AGG + chr1_1:78925407-78925426 Msa0046650:intron 20.0%
!! CTTAATTTATATTTGGACTT+TGG + chr1_1:78925478-78925497 Msa0046650:intron 20.0%
!! CAAATCTTAAGGAAAATAAA+AGG - chr1_1:78925524-78925543 None:intergenic 20.0%
!!! CTTTTATTTTCCTTAAGATT+TGG + chr1_1:78925522-78925541 Msa0046650:intron 20.0%
!! AACAATCAATTGTACTTTAA+TGG + chr1_1:78925686-78925705 Msa0046650:intron 20.0%
!! AGGACAATGTTATTAGTTTA+AGG + chr1_1:78922674-78922693 Msa0046650:intron 25.0%
!! GGACAATGTTATTAGTTTAA+GGG + chr1_1:78922675-78922694 Msa0046650:intron 25.0%
! AAACTATGAGAGAAACTATT+AGG + chr1_1:78922748-78922767 Msa0046650:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr1_1:78922797-78922816 Msa0046650:intron 25.0%
!!! ATGATTTTAGTCTTGTAGTT+GGG + chr1_1:78923105-78923124 Msa0046650:intron 25.0%
! GACTAAAACAACAATTATCA+AGG - chr1_1:78923421-78923440 None:intergenic 25.0%
!!! TACAAAAACTTGTTAGGTTA+TGG + chr1_1:78923579-78923598 Msa0046650:CDS 25.0%
!! GGTTAAAACTAGATTTGTTT+GGG + chr1_1:78924231-78924250 Msa0046650:intron 25.0%
! TTAATGACGTCAAAATAGAT+AGG - chr1_1:78924349-78924368 None:intergenic 25.0%
! TATAGGTATTTGTTTCACTT+GGG + chr1_1:78924397-78924416 Msa0046650:intron 25.0%
! AGATTATAACAAGTTGTTAC+TGG + chr1_1:78924718-78924737 Msa0046650:intron 25.0%
! AGAAATATTAAGATGCATGA+GGG - chr1_1:78924752-78924771 None:intergenic 25.0%
! AAGAAATATTAAGATGCATG+AGG - chr1_1:78924753-78924772 None:intergenic 25.0%
!! CTTGTTTGACTTATTTATGT+AGG + chr1_1:78924820-78924839 Msa0046650:intron 25.0%
! CTGTATTATAAAACCCAAAA+GGG - chr1_1:78924868-78924887 None:intergenic 25.0%
! TTTATATTTAATTAGGCAGC+AGG + chr1_1:78925376-78925395 Msa0046650:intron 25.0%
!!! TTTTTGTTTTAGGTTTAGGA+AGG + chr1_1:78925411-78925430 Msa0046650:intron 25.0%
! AGGGAAATATACTGAAATTA+GGG + chr1_1:78925446-78925465 Msa0046650:intron 25.0%
!!! TTTGGTGCAGATAATTTTAT+GGG - chr1_1:78925573-78925592 None:intergenic 25.0%
!!! TTTTGGTGCAGATAATTTTA+TGG - chr1_1:78925574-78925593 None:intergenic 25.0%
! TGAATTTTCCATGATTCGAT+CGG - chr1_1:78922167-78922186 None:intergenic 30.0%
ACAACAACATTTGCAGTATT+CGG - chr1_1:78922553-78922572 None:intergenic 30.0%
! TGTTGTTGTTGATATTGTTG+AGG + chr1_1:78922564-78922583 Msa0046650:CDS 30.0%
! AAAAGAACAAGATTTTACCG+CGG - chr1_1:78922632-78922651 None:intergenic 30.0%
! ATTAGTTTAAGGGTATGTGA+AGG + chr1_1:78922685-78922704 Msa0046650:intron 30.0%
! TTAGTTTAAGGGTATGTGAA+GGG + chr1_1:78922686-78922705 Msa0046650:intron 30.0%
! GTTTCTCTCATAGTTTTTCT+AGG - chr1_1:78922744-78922763 None:intergenic 30.0%
ATTAGGAAAGATTAACGAGT+TGG + chr1_1:78922765-78922784 Msa0046650:intron 30.0%
!!! TGGTTTTATATGGTCATTCT+TGG + chr1_1:78923016-78923035 Msa0046650:intron 30.0%
!! GGTTTTATATGGTCATTCTT+GGG + chr1_1:78923017-78923036 Msa0046650:intron 30.0%
!!! CATGATTTTAGTCTTGTAGT+TGG + chr1_1:78923104-78923123 Msa0046650:intron 30.0%
!! TATTTTAGGGAGTGACATAT+TGG + chr1_1:78923215-78923234 Msa0046650:intron 30.0%
ACTTAAAGGAACTTCAAATC+CGG + chr1_1:78923677-78923696 Msa0046650:CDS 30.0%
! CAAAAGTGTATGTCAAATCA+TGG - chr1_1:78923803-78923822 None:intergenic 30.0%
! CATGATTTGACATACACTTT+TGG + chr1_1:78923801-78923820 Msa0046650:CDS 30.0%
! ATTTGACATACACTTTTGGA+TGG + chr1_1:78923805-78923824 Msa0046650:CDS 30.0%
!!! CAGGTTATTAGGTTTTATTC+AGG - chr1_1:78924095-78924114 None:intergenic 30.0%
AACTTAACAGACAGGTTATT+AGG - chr1_1:78924106-78924125 None:intergenic 30.0%
TGCTATATAACTTAACAGAC+AGG - chr1_1:78924114-78924133 None:intergenic 30.0%
!!! AAATCTAGTTTTAACCCTGA+CGG - chr1_1:78924227-78924246 None:intergenic 30.0%
! GGGTTAAAACTAGATTTGTT+TGG + chr1_1:78924230-78924249 Msa0046650:intron 30.0%
! GGTTATTGTACAAAGAGTAT+AGG + chr1_1:78924380-78924399 Msa0046650:intron 30.0%
GTATAGGTATTTGTTTCACT+TGG + chr1_1:78924396-78924415 Msa0046650:intron 30.0%
TCACACTATTCAGAAGATAT+TGG + chr1_1:78924503-78924522 Msa0046650:intron 30.0%
GTCAAAGTCTATGTTGAAAT+TGG + chr1_1:78924646-78924665 Msa0046650:intron 30.0%
TTAGAGTAAATGCTAAACAC+TGG + chr1_1:78924688-78924707 Msa0046650:intron 30.0%
TAGAGTAAATGCTAAACACT+GGG + chr1_1:78924689-78924708 Msa0046650:intron 30.0%
GCTGTATTATAAAACCCAAA+AGG - chr1_1:78924869-78924888 None:intergenic 30.0%
AAATAAAACCTTTCAGGAAG+GGG - chr1_1:78924959-78924978 None:intergenic 30.0%
CAAATAAAACCTTTCAGGAA+GGG - chr1_1:78924960-78924979 None:intergenic 30.0%
!!! CTTCCTGAAAGGTTTTATTT+GGG + chr1_1:78924959-78924978 Msa0046650:CDS 30.0%
! ATTGTGGGGATTTAAAACTA+GGG + chr1_1:78925024-78925043 Msa0046650:CDS 30.0%
ACAATAGTGATTCCTCTAAA+TGG + chr1_1:78925098-78925117 Msa0046650:CDS 30.0%
CAATAGTGATTCCTCTAAAT+GGG + chr1_1:78925099-78925118 Msa0046650:CDS 30.0%
TAATTGGAAGATCAAAAGAG+AGG - chr1_1:78925165-78925184 None:intergenic 30.0%
! TCTCTTTTGATCTTCCAATT+AGG + chr1_1:78925164-78925183 Msa0046650:CDS 30.0%
GAGGGAAATATACTGAAATT+AGG + chr1_1:78925445-78925464 Msa0046650:intron 30.0%
CAATTCAGAACCAAATCTTA+AGG - chr1_1:78925535-78925554 None:intergenic 30.0%
TTCACAACAAATTCAAACCT+TGG - chr1_1:78925603-78925622 None:intergenic 30.0%
AAACAGTGAATGCCAAATTA+GGG - chr1_1:78925755-78925774 None:intergenic 30.0%
AAAACAGTGAATGCCAAATT+AGG - chr1_1:78925756-78925775 None:intergenic 30.0%
TCATGGAAAGTCTTGATAAA+AGG - chr1_1:78925782-78925801 None:intergenic 30.0%
! GATATACTTTTCACTGTTTC+AGG + chr1_1:78925812-78925831 Msa0046650:intron 30.0%
! ATCGTGGTAAAAATGGATTT+AGG + chr1_1:78925871-78925890 Msa0046650:CDS 30.0%
! AGTCTGGATTTTAAATGACA+AGG - chr1_1:78926018-78926037 None:intergenic 30.0%
! CCTTTTCTTAATTTTCAGTC+TGG - chr1_1:78926034-78926053 None:intergenic 30.0%
CCAGACTGAAAATTAAGAAA+AGG + chr1_1:78926031-78926050 Msa0046650:three_prime_UTR 30.0%
! AAAAGGCATAGTTTCAGATT+TGG + chr1_1:78926048-78926067 Msa0046650:three_prime_UTR 30.0%
! AAAGGCATAGTTTCAGATTT+GGG + chr1_1:78926049-78926068 Msa0046650:three_prime_UTR 30.0%
! TTTCAGATTTGGGGATTTTT+AGG + chr1_1:78926059-78926078 Msa0046650:three_prime_UTR 30.0%
!! TTTGGGGATTTTTAGGAATT+AGG + chr1_1:78926066-78926085 Msa0046650:three_prime_UTR 30.0%
! ATAACTCCTAACATTGATTG+AGG + chr1_1:78926252-78926271 Msa0046650:three_prime_UTR 30.0%
AGTGTACATGTATGTTTGAT+GGG + chr1_1:78926299-78926318 Msa0046650:three_prime_UTR 30.0%
! TTCTTGTTGTGAGATGAAAG+TGG - chr1_1:78922134-78922153 None:intergenic 35.0%
! TTGACTTCTTCTTTGGGTTT+GGG - chr1_1:78922205-78922224 None:intergenic 35.0%
!! TGTTCGTTGACTTCTTCTTT+GGG - chr1_1:78922211-78922230 None:intergenic 35.0%
!!! GGGTTTCGAGTTTGAATTTT+TGG - chr1_1:78922300-78922319 None:intergenic 35.0%
CAACACGAAAACCAAAGATT+GGG + chr1_1:78922381-78922400 Msa0046650:CDS 35.0%
!! AGTAGAGTTTCTGGTGAATT+TGG + chr1_1:78922592-78922611 Msa0046650:CDS 35.0%
! AAAGAACAAGATTTTACCGC+GGG - chr1_1:78922631-78922650 None:intergenic 35.0%
!!! AGACTAGGGTTGGTTTTATA+TGG + chr1_1:78923006-78923025 Msa0046650:intron 35.0%
!! GGGGTTAGTGTTGTATTTTA+GGG + chr1_1:78923202-78923221 Msa0046650:intron 35.0%
! TATTGGTTGACAATGCTCTA+TGG + chr1_1:78923232-78923251 Msa0046650:intron 35.0%
AATCAGACATATCTGCTACA+TGG + chr1_1:78923304-78923323 Msa0046650:intron 35.0%
!!! TGTTTTAGTCCTTGTTCTGT+TGG + chr1_1:78923431-78923450 Msa0046650:intron 35.0%
ATACAGTTACCAACAGAACA+AGG - chr1_1:78923443-78923462 None:intergenic 35.0%
TGTTAGGTTATGGTGATCTA+TGG + chr1_1:78923589-78923608 Msa0046650:CDS 35.0%
GTTAGGTTATGGTGATCTAT+GGG + chr1_1:78923590-78923609 Msa0046650:CDS 35.0%
TTGAAGTTCCTTTAAGTCGA+GGG - chr1_1:78923674-78923693 None:intergenic 35.0%
! TTTGAAGTTCCTTTAAGTCG+AGG - chr1_1:78923675-78923694 None:intergenic 35.0%
TTCGTACAAAGAGCAATTGT+TGG + chr1_1:78923746-78923765 Msa0046650:CDS 35.0%
TCGTACAAAGAGCAATTGTT+GGG + chr1_1:78923747-78923766 Msa0046650:CDS 35.0%
ATAGGAGAAACTCACCAATT+AGG + chr1_1:78923925-78923944 Msa0046650:CDS 35.0%
! ACAAAAGCAAGTCCTTTTGT+GGG - chr1_1:78923951-78923970 None:intergenic 35.0%
! AACAAAAGCAAGTCCTTTTG+TGG - chr1_1:78923952-78923971 None:intergenic 35.0%
!!! AGGTTTTATTCAGGATGCAT+AGG - chr1_1:78924086-78924105 None:intergenic 35.0%
TTAATTAGGATTACTCCGTC+AGG + chr1_1:78924209-78924228 Msa0046650:intron 35.0%
TAATTAGGATTACTCCGTCA+GGG + chr1_1:78924210-78924229 Msa0046650:intron 35.0%
! AAACTAGATTTGTTTGGGCA+TGG + chr1_1:78924236-78924255 Msa0046650:intron 35.0%
! AACTAGATTTGTTTGGGCAT+GGG + chr1_1:78924237-78924256 Msa0046650:intron 35.0%
! CTGAATTTTTCATGTGTCCA+AGG - chr1_1:78924275-78924294 None:intergenic 35.0%
CACATGAAAAATTCAGAACC+TGG + chr1_1:78924279-78924298 Msa0046650:intron 35.0%
TCCTTTCATATTGCATAGGA+AGG - chr1_1:78924428-78924447 None:intergenic 35.0%
TGTGTCCTTTCATATTGCAT+AGG - chr1_1:78924432-78924451 None:intergenic 35.0%
!!! CACATTTAGTTTTCATGAGC+AGG + chr1_1:78924448-78924467 Msa0046650:intron 35.0%
TATTCAGAAGATATTGGCAG+TGG + chr1_1:78924509-78924528 Msa0046650:intron 35.0%
AGAGTAAATGCTAAACACTG+GGG + chr1_1:78924690-78924709 Msa0046650:intron 35.0%
TTATGTAGGAGTTTGATGCT+CGG + chr1_1:78924834-78924853 Msa0046650:intron 35.0%
! TATAATACAGCACTGAACCT+AGG + chr1_1:78924878-78924897 Msa0046650:CDS 35.0%
! ATAATACAGCACTGAACCTA+GGG + chr1_1:78924879-78924898 Msa0046650:CDS 35.0%
CCAAATAAAACCTTTCAGGA+AGG - chr1_1:78924961-78924980 None:intergenic 35.0%
!!! CCTTCCTGAAAGGTTTTATT+TGG + chr1_1:78924958-78924977 Msa0046650:CDS 35.0%
TTAAATCCCCACAATGTCAT+TGG - chr1_1:78925019-78925038 None:intergenic 35.0%
! CATTGTGGGGATTTAAAACT+AGG + chr1_1:78925023-78925042 Msa0046650:CDS 35.0%
! TTGTGGGGATTTAAAACTAG+GGG + chr1_1:78925025-78925044 Msa0046650:CDS 35.0%
! GGATTTAAAACTAGGGGATT+AGG + chr1_1:78925031-78925050 Msa0046650:CDS 35.0%
! CTTTTGATCTTCCAATTAGG+TGG + chr1_1:78925167-78925186 Msa0046650:CDS 35.0%
TGTTCTCTTAACCACCTAAT+TGG - chr1_1:78925181-78925200 None:intergenic 35.0%
ATTAGGTGGTTAAGAGAACA+CGG + chr1_1:78925181-78925200 Msa0046650:CDS 35.0%
AATATAAGCACTTCTCTCCT+CGG + chr1_1:78925260-78925279 Msa0046650:CDS 35.0%
!!! TTGTTTTAGGTTTAGGAAGG+TGG + chr1_1:78925414-78925433 Msa0046650:intron 35.0%
!!! TGTTTTAGGTTTAGGAAGGT+GGG + chr1_1:78925415-78925434 Msa0046650:intron 35.0%
TTTATATTTGGACTTTGGGC+TGG + chr1_1:78925483-78925502 Msa0046650:intron 35.0%
AACAGTGAATGCCAAATTAG+GGG - chr1_1:78925754-78925773 None:intergenic 35.0%
GTATATCAGCGAAGAAATCA+TGG - chr1_1:78925799-78925818 None:intergenic 35.0%
GAACATGATCGTGGTAAAAA+TGG + chr1_1:78925864-78925883 Msa0046650:CDS 35.0%
AAGGCATAGTTTCAGATTTG+GGG + chr1_1:78926050-78926069 Msa0046650:three_prime_UTR 35.0%
! TAGGTTTTTGAATTACCCTG+TGG + chr1_1:78926085-78926104 Msa0046650:three_prime_UTR 35.0%
! AGGTTTTTGAATTACCCTGT+GGG + chr1_1:78926086-78926105 Msa0046650:three_prime_UTR 35.0%
CACTCATTTACTGCTACATA+TGG + chr1_1:78926170-78926189 Msa0046650:three_prime_UTR 35.0%
ATTTACTGCTACATATGGAG+AGG + chr1_1:78926175-78926194 Msa0046650:three_prime_UTR 35.0%
CAGTGTACATGTATGTTTGA+TGG + chr1_1:78926298-78926317 Msa0046650:three_prime_UTR 35.0%
TTCCAAAACCGATCGAATCA+TGG + chr1_1:78922156-78922175 Msa0046650:exon 40.0%
!! TTCCATGATTCGATCGGTTT+TGG - chr1_1:78922161-78922180 None:intergenic 40.0%
! CTTTGGGTTTGGGATTGTTA+GGG - chr1_1:78922195-78922214 None:intergenic 40.0%
! TCTTTGGGTTTGGGATTGTT+AGG - chr1_1:78922196-78922215 None:intergenic 40.0%
! GTTGACTTCTTCTTTGGGTT+TGG - chr1_1:78922206-78922225 None:intergenic 40.0%
!! GTGTTCGTTGACTTCTTCTT+TGG - chr1_1:78922212-78922231 None:intergenic 40.0%
!!! CGAGTTTGAATTTTTGGTCG+CGG - chr1_1:78922294-78922313 None:intergenic 40.0%
GAATTATCACGTCGTGAACT+CGG - chr1_1:78922357-78922376 None:intergenic 40.0%
GCAACACGAAAACCAAAGAT+TGG + chr1_1:78922380-78922399 Msa0046650:CDS 40.0%
!! AGTAAGATTAGTCTTGAGCC+TGG + chr1_1:78922514-78922533 Msa0046650:CDS 40.0%
TATGTGAAGGGTCTGGATTA+AGG + chr1_1:78922698-78922717 Msa0046650:intron 40.0%
AAGGAGAGTAGATCAGATAG+AGG + chr1_1:78922717-78922736 Msa0046650:intron 40.0%
! TAACGAGTTGGACCGAAATA+TGG + chr1_1:78922777-78922796 Msa0046650:intron 40.0%
CAGACACTTCAACAACTAAG+TGG - chr1_1:78922845-78922864 None:intergenic 40.0%
! AAGTCTTATCCTGCTAAGTG+GGG - chr1_1:78922965-78922984 None:intergenic 40.0%
! CAAGTCTTATCCTGCTAAGT+GGG - chr1_1:78922966-78922985 None:intergenic 40.0%
! TTAGCAGGATAAGACTTGGT+TGG + chr1_1:78922968-78922987 Msa0046650:intron 40.0%
!! ATAAGACTTGGTTGGTGTTG+TGG + chr1_1:78922976-78922995 Msa0046650:intron 40.0%
!! GGTTTGCTAGCACTAGAATA+GGG + chr1_1:78923126-78923145 Msa0046650:intron 40.0%
!! GGGGGTTAGTGTTGTATTTT+AGG + chr1_1:78923201-78923220 Msa0046650:intron 40.0%
!! ACGTACAATGACGCTTTTTG+AGG + chr1_1:78923264-78923283 Msa0046650:intron 40.0%
GCATAAAAGCTCGCATTAAG+AGG - chr1_1:78923330-78923349 None:intergenic 40.0%
! GAACTAGTCTGCAAAAGCAT+TGG - chr1_1:78923534-78923553 None:intergenic 40.0%
!! TGCTTTTGCAGACTAGTTCT+TGG + chr1_1:78923535-78923554 Msa0046650:intron 40.0%
TGATCTATGGGATGCTTCTT+TGG + chr1_1:78923602-78923621 Msa0046650:CDS 40.0%
TTATATGCCCCTCGACTTAA+AGG + chr1_1:78923663-78923682 Msa0046650:CDS 40.0%
TGAAGTTCCTTTAAGTCGAG+GGG - chr1_1:78923673-78923692 None:intergenic 40.0%
AGAAAACTCCTGCCAATCTT+GGG - chr1_1:78923727-78923746 None:intergenic 40.0%
AAGAAAACTCCTGCCAATCT+TGG - chr1_1:78923728-78923747 None:intergenic 40.0%
! TTTTGGATGGCGTACCTTAA+CGG + chr1_1:78923818-78923837 Msa0046650:CDS 40.0%
CATTTGCAATGGATCCGTTA+AGG - chr1_1:78923835-78923854 None:intergenic 40.0%
! CTTAACGGATCCATTGCAAA+TGG + chr1_1:78923833-78923852 Msa0046650:CDS 40.0%
!! TTTGTTTCTACCACTCACCT+TGG + chr1_1:78923966-78923985 Msa0046650:CDS 40.0%
AGCTTCGATTATCTGGTGTA+AGG - chr1_1:78923995-78924014 None:intergenic 40.0%
! TGAAATAGCTCTGTGAGTAC+TGG + chr1_1:78924147-78924166 Msa0046650:intron 40.0%
! TTTTCATGTGTCCAAGGAGA+TGG - chr1_1:78924269-78924288 None:intergenic 40.0%
! CACTACAGATTTTCCGCTAT+TGG - chr1_1:78924314-78924333 None:intergenic 40.0%
AGGTATTTGTTTCACTTGGG+TGG + chr1_1:78924400-78924419 Msa0046650:intron 40.0%
GGTATTTGTTTCACTTGGGT+GGG + chr1_1:78924401-78924420 Msa0046650:intron 40.0%
GTATTTGTTTCACTTGGGTG+GGG + chr1_1:78924402-78924421 Msa0046650:intron 40.0%
GCCTTCCTATGCAATATGAA+AGG + chr1_1:78924424-78924443 Msa0046650:intron 40.0%
GCAACCTTCTACTTCTTTAG+CGG + chr1_1:78924555-78924574 Msa0046650:intron 40.0%
CAACCTTCTACTTCTTTAGC+GGG + chr1_1:78924556-78924575 Msa0046650:intron 40.0%
AACCTTCTACTTCTTTAGCG+GGG + chr1_1:78924557-78924576 Msa0046650:intron 40.0%
GAGTAAATGCTAAACACTGG+GGG + chr1_1:78924691-78924710 Msa0046650:intron 40.0%
!!! TGCTGGTGCTATTTTTCCAT+GGG + chr1_1:78924907-78924926 Msa0046650:CDS 40.0%
CCACCCAAATAAAACCTTTC+AGG - chr1_1:78924965-78924984 None:intergenic 40.0%
!!! CCTGAAAGGTTTTATTTGGG+TGG + chr1_1:78924962-78924981 Msa0046650:CDS 40.0%
AACAGAAAGATCTCCTCCAA+TGG - chr1_1:78925128-78925147 None:intergenic 40.0%
TTAGGTGGTTAAGAGAACAC+GGG + chr1_1:78925182-78925201 Msa0046650:CDS 40.0%
TGAAGCATAAGCTAACCTCT+AGG - chr1_1:78925351-78925370 None:intergenic 40.0%
!!! GTTTTAGGTTTAGGAAGGTG+GGG + chr1_1:78925416-78925435 Msa0046650:intron 40.0%
!!! TTTTAGGTTTAGGAAGGTGG+GGG + chr1_1:78925417-78925436 Msa0046650:intron 40.0%
! TCAAACCTTGGAGCACATTT+TGG - chr1_1:78925591-78925610 None:intergenic 40.0%
ACAGTGAATGCCAAATTAGG+GGG - chr1_1:78925753-78925772 None:intergenic 40.0%
! GGTTTTTGAATTACCCTGTG+GGG + chr1_1:78926087-78926106 Msa0046650:three_prime_UTR 40.0%
! GTTTTTGAATTACCCTGTGG+GGG + chr1_1:78926088-78926107 Msa0046650:three_prime_UTR 40.0%
GAGTTCTCAATGCCAAATTG+AGG - chr1_1:78926201-78926220 None:intergenic 40.0%
GCATGACCTCAATCAATGTT+AGG - chr1_1:78926261-78926280 None:intergenic 40.0%
! GGTTTGGGATTGTTAGGGTT+TGG - chr1_1:78922190-78922209 None:intergenic 45.0%
!!! TGAATTTTTGGTCGCGGAGA+CGG - chr1_1:78922288-78922307 None:intergenic 45.0%
TTGGAACTAGCTCCGATGAA+AGG - chr1_1:78922333-78922352 None:intergenic 45.0%
GTTCACGACGTGATAATTCG+CGG + chr1_1:78922358-78922377 Msa0046650:CDS 45.0%
AGCTTCGATCACCCAATCTT+TGG - chr1_1:78922395-78922414 None:intergenic 45.0%
GTGATCGAAGCTGAACTTGA+GGG + chr1_1:78922403-78922422 Msa0046650:CDS 45.0%
ACGAATAAGCTCTTGCATGG+TGG - chr1_1:78922443-78922462 None:intergenic 45.0%
TGCACGAATAAGCTCTTGCA+TGG - chr1_1:78922446-78922465 None:intergenic 45.0%
AAGCCTAGCAAGCACAATCT+CGG - chr1_1:78922470-78922489 None:intergenic 45.0%
TGGTGTTTATACCAAACCCG+CGG + chr1_1:78922612-78922631 Msa0046650:CDS 45.0%
! ACAAGATTTTACCGCGGGTT+TGG - chr1_1:78922626-78922645 None:intergenic 45.0%
! TTAAGGGTATGTGAAGGGTC+TGG + chr1_1:78922691-78922710 Msa0046650:intron 45.0%
CTTCAACAACTAAGTGGCGT+TGG - chr1_1:78922839-78922858 None:intergenic 45.0%
! CCAAGTCTTATCCTGCTAAG+TGG - chr1_1:78922967-78922986 None:intergenic 45.0%
CCACTTAGCAGGATAAGACT+TGG + chr1_1:78922964-78922983 Msa0046650:intron 45.0%
TGTTGTGGATAGCAGAGACT+AGG + chr1_1:78922991-78923010 Msa0046650:intron 45.0%
GTTGTGGATAGCAGAGACTA+GGG + chr1_1:78922992-78923011 Msa0046650:intron 45.0%
! GGTCATTCTTGGGAAGCTTT+TGG + chr1_1:78923027-78923046 Msa0046650:intron 45.0%
!! GGGTTTGCTAGCACTAGAAT+AGG + chr1_1:78923125-78923144 Msa0046650:intron 45.0%
AACCCATTCTTCCTCACCTT+GGG + chr1_1:78923169-78923188 Msa0046650:intron 45.0%
TGGTTGACAATGCTCTATGG+AGG + chr1_1:78923235-78923254 Msa0046650:intron 45.0%
GCTGAGTAGTTAGTACTTGC+TGG + chr1_1:78923471-78923490 Msa0046650:intron 45.0%
! TTGCAGACTAGTTCTTGGAC+TGG + chr1_1:78923540-78923559 Msa0046650:intron 45.0%
!! ACTAGTTCTTGGACTGGTGA+AGG + chr1_1:78923546-78923565 Msa0046650:CDS 45.0%
! TGGGATGCTTCTTTGGCTTA+CGG + chr1_1:78923609-78923628 Msa0046650:CDS 45.0%
AAGCAACAGAGGTGAGTGTA+GGG + chr1_1:78923640-78923659 Msa0046650:CDS 45.0%
CTTCAAATCCGGTTGTAGCA+CGG + chr1_1:78923688-78923707 Msa0046650:CDS 45.0%
TGTCCATGCTTTCCCAAGAT+TGG + chr1_1:78923712-78923731 Msa0046650:CDS 45.0%
CAATTGTTGGGCATGTCTCT+TGG + chr1_1:78923759-78923778 Msa0046650:CDS 45.0%
ATCCATTGCAAATGGCATCC+AGG + chr1_1:78923841-78923860 Msa0046650:CDS 45.0%
TCACCAATTAGGCCCACAAA+AGG + chr1_1:78923936-78923955 Msa0046650:CDS 45.0%
! AGTCCTTTTGTGGGCCTAAT+TGG - chr1_1:78923942-78923961 None:intergenic 45.0%
CACCAGATAATCGAAGCTTG+CGG + chr1_1:78923997-78924016 Msa0046650:CDS 45.0%
AACCGCAAGCTTCGATTATC+TGG - chr1_1:78924002-78924021 None:intergenic 45.0%
ACCTTCTACTTCTTTAGCGG+GGG + chr1_1:78924558-78924577 Msa0046650:intron 45.0%
AAATGCTAAACACTGGGGGA+TGG + chr1_1:78924695-78924714 Msa0046650:intron 45.0%
!!! CTGCTGGTGCTATTTTTCCA+TGG + chr1_1:78924906-78924925 Msa0046650:CDS 45.0%
!!! GCTGGTGCTATTTTTCCATG+GGG + chr1_1:78924908-78924927 Msa0046650:CDS 45.0%
!!! GCTATTTTTCCATGGGGACA+TGG + chr1_1:78924914-78924933 Msa0046650:CDS 45.0%
TTCATGAAACCATGTCCCCA+TGG - chr1_1:78924926-78924945 None:intergenic 45.0%
TTCTCTCCAGTTTGTACCCT+AGG + chr1_1:78924989-78925008 Msa0046650:CDS 45.0%
CAATGTCATTGGTCCTCCTA+GGG - chr1_1:78925008-78925027 None:intergenic 45.0%
ACAATGTCATTGGTCCTCCT+AGG - chr1_1:78925009-78925028 None:intergenic 45.0%
TAGGAGGACCAATGACATTG+TGG + chr1_1:78925008-78925027 Msa0046650:CDS 45.0%
AGGAGGACCAATGACATTGT+GGG + chr1_1:78925009-78925028 Msa0046650:CDS 45.0%
ACATCTCTGCTTTGTCTTCG+TGG - chr1_1:78925067-78925086 None:intergenic 45.0%
TCCTCTAAATGGGACTCCAT+TGG + chr1_1:78925109-78925128 Msa0046650:CDS 45.0%
TCCAATGGAGTCCCATTTAG+AGG - chr1_1:78925113-78925132 None:intergenic 45.0%
TCTAAATGGGACTCCATTGG+AGG + chr1_1:78925112-78925131 Msa0046650:CDS 45.0%
TAGGTGGTTAAGAGAACACG+GGG + chr1_1:78925183-78925202 Msa0046650:CDS 45.0%
!! GTCCATGGTCATGTTTTTGC+TGG + chr1_1:78925205-78925224 Msa0046650:CDS 45.0%
CACCAGCAAAAACATGACCA+TGG - chr1_1:78925210-78925229 None:intergenic 45.0%
!! GTCATGTTTTTGCTGGTGCT+GGG + chr1_1:78925212-78925231 Msa0046650:CDS 45.0%
CTGATGTTCGGAAGGATTCT+AGG - chr1_1:78925291-78925310 None:intergenic 45.0%
AGAATCCTTCCGAACATCAG+TGG + chr1_1:78925291-78925310 Msa0046650:CDS 45.0%
GAATCCTTCCGAACATCAGT+GGG + chr1_1:78925292-78925311 Msa0046650:CDS 45.0%
ATCCACATCCCACTGATGTT+CGG - chr1_1:78925303-78925322 None:intergenic 45.0%
TCTAGGCGGAAAAGACTAGT+AGG - chr1_1:78925334-78925353 None:intergenic 45.0%
!!! TACTAGTCTTTTCCGCCTAG+AGG + chr1_1:78925333-78925352 Msa0046650:CDS 45.0%
AGCATAAGCTAACCTCTAGG+CGG - chr1_1:78925348-78925367 None:intergenic 45.0%
AAGCAGACTGAACATGATCG+TGG + chr1_1:78925855-78925874 Msa0046650:CDS 45.0%
TGTCAAACCAGCCTCTATGA+AGG - chr1_1:78925912-78925931 None:intergenic 45.0%
ACATTGTTGCTCTCTGTCAC+TGG + chr1_1:78925972-78925991 Msa0046650:three_prime_UTR 45.0%
TACATGTTATGACCCCCACA+GGG - chr1_1:78926103-78926122 None:intergenic 45.0%
CATATGGAGAGGCCTCAATT+TGG + chr1_1:78926186-78926205 Msa0046650:three_prime_UTR 45.0%
!!! GAATTTTTGGTCGCGGAGAC+GGG - chr1_1:78922287-78922306 None:intergenic 50.0%
ATCACGTCGTGAACTCGGAT+TGG - chr1_1:78922352-78922371 None:intergenic 50.0%
GGTGATCGAAGCTGAACTTG+AGG + chr1_1:78922402-78922421 Msa0046650:CDS 50.0%
CATCCGAGATTGTGCTTGCT+AGG + chr1_1:78922464-78922483 Msa0046650:CDS 50.0%
CTTGCTAGGCTTCAGAGTCT+CGG + chr1_1:78922478-78922497 Msa0046650:CDS 50.0%
TTGCTAGGCTTCAGAGTCTC+GGG + chr1_1:78922479-78922498 Msa0046650:CDS 50.0%
!! GATTAGTCTTGAGCCTGGAC+CGG + chr1_1:78922519-78922538 Msa0046650:CDS 50.0%
GAGGCTGCTAGTAGAGTTTC+TGG + chr1_1:78922583-78922602 Msa0046650:CDS 50.0%
!! CAACTAAGTGGCGTTGGCTA+CGG - chr1_1:78922833-78922852 None:intergenic 50.0%
GCTAAGTGGGGTGAACTACA+TGG - chr1_1:78922953-78922972 None:intergenic 50.0%
TGTAGTTCACCCCACTTAGC+AGG + chr1_1:78922953-78922972 Msa0046650:intron 50.0%
TGGATAGCAGAGACTAGGGT+TGG + chr1_1:78922996-78923015 Msa0046650:intron 50.0%
GAACCCATTCTTCCTCACCT+TGG + chr1_1:78923168-78923187 Msa0046650:intron 50.0%
ACCCATTCTTCCTCACCTTG+GGG + chr1_1:78923170-78923189 Msa0046650:intron 50.0%
ACCCCAAGGTGAGGAAGAAT+GGG - chr1_1:78923174-78923193 None:intergenic 50.0%
AACCCCAAGGTGAGGAAGAA+TGG - chr1_1:78923175-78923194 None:intergenic 50.0%
ATTCTTCCTCACCTTGGGGT+TGG + chr1_1:78923174-78923193 Msa0046650:intron 50.0%
TTCTTCCTCACCTTGGGGTT+GGG + chr1_1:78923175-78923194 Msa0046650:intron 50.0%
CTACACTCACCTCTGTTGCT+TGG - chr1_1:78923641-78923660 None:intergenic 50.0%
CAAGCAACAGAGGTGAGTGT+AGG + chr1_1:78923639-78923658 Msa0046650:CDS 50.0%
CTGCCAATCTTGGGAAAGCA+TGG - chr1_1:78923718-78923737 None:intergenic 50.0%
CATGCTTTCCCAAGATTGGC+AGG + chr1_1:78923716-78923735 Msa0046650:CDS 50.0%
! GACCTGGATGCCATTTGCAA+TGG - chr1_1:78923846-78923865 None:intergenic 50.0%
TGGCATCCAGGTCTGTAAGA+AGG + chr1_1:78923853-78923872 Msa0046650:CDS 50.0%
AAGCTGCCTTCTTACAGACC+TGG - chr1_1:78923862-78923881 None:intergenic 50.0%
AGGTCTGTAAGAAGGCAGCT+TGG + chr1_1:78923861-78923880 Msa0046650:CDS 50.0%
GGTCTGTAAGAAGGCAGCTT+GGG + chr1_1:78923862-78923881 Msa0046650:CDS 50.0%
GTTTCTACCACTCACCTTGG+TGG + chr1_1:78923969-78923988 Msa0046650:CDS 50.0%
TATCTGGTGTAAGGCCACCA+AGG - chr1_1:78923986-78924005 None:intergenic 50.0%
CCTTCTACTTCTTTAGCGGG+GGG + chr1_1:78924559-78924578 Msa0046650:intron 50.0%
! CTCGGTATGCTGTCCCTTTT+GGG + chr1_1:78924852-78924871 Msa0046650:CDS 50.0%
CTGAACCTAGGGATTTCTGC+TGG + chr1_1:78924890-78924909 Msa0046650:CDS 50.0%
TAGCACCAGCAGAAATCCCT+AGG - chr1_1:78924898-78924917 None:intergenic 50.0%
AACCTTTCAGGAAGGGGAGA+TGG - chr1_1:78924953-78924972 None:intergenic 50.0%
TCTCCAGTTTGTACCCTAGG+AGG + chr1_1:78924992-78925011 Msa0046650:CDS 50.0%
GGAGGACCAATGACATTGTG+GGG + chr1_1:78925010-78925029 Msa0046650:CDS 50.0%
CTTTGTCTTCGTGGTTCAGC+AGG - chr1_1:78925058-78925077 None:intergenic 50.0%
TTAAGAGAACACGGGGTCCA+TGG + chr1_1:78925190-78925209 Msa0046650:CDS 50.0%
!! GGTCATGTTTTTGCTGGTGC+TGG + chr1_1:78925211-78925230 Msa0046650:CDS 50.0%
ATAAGCACTTCTCTCCTCGG+AGG + chr1_1:78925263-78925282 Msa0046650:CDS 50.0%
! AAGGATTCTAGGAACCTCCG+AGG - chr1_1:78925280-78925299 None:intergenic 50.0%
ACATCCCACTGATGTTCGGA+AGG - chr1_1:78925299-78925318 None:intergenic 50.0%
TTCCGAACATCAGTGGGATG+TGG + chr1_1:78925298-78925317 Msa0046650:CDS 50.0%
CTGCACCAAAATGTGCTCCA+AGG + chr1_1:78925583-78925602 Msa0046650:intron 50.0%
GTGAATGCCAAATTAGGGGG+AGG - chr1_1:78925750-78925769 None:intergenic 50.0%
GCTTCTCAGCTCCTTCATAG+AGG + chr1_1:78925898-78925917 Msa0046650:CDS 50.0%
TGTTGCTCTCTGTCACTGGA+TGG + chr1_1:78925976-78925995 Msa0046650:three_prime_UTR 50.0%
CTACATGTTATGACCCCCAC+AGG - chr1_1:78926104-78926123 None:intergenic 50.0%
TGTAGCCGATGCTCATTGCA+TGG + chr1_1:78926119-78926138 Msa0046650:three_prime_UTR 50.0%
CTCAGCCATGCAATGAGCAT+CGG - chr1_1:78926127-78926146 None:intergenic 50.0%
AGACGGGAAAGTGGGGATTG+TGG - chr1_1:78922271-78922290 None:intergenic 55.0%
!! CGATGAAAGGCGTCGGGATA+GGG - chr1_1:78922320-78922339 None:intergenic 55.0%
CCTATCCCGACGCCTTTCAT+CGG + chr1_1:78922318-78922337 Msa0046650:CDS 55.0%
!! TAGCTCCGATGAAAGGCGTC+GGG - chr1_1:78922326-78922345 None:intergenic 55.0%
! CTAGCTCCGATGAAAGGCGT+CGG - chr1_1:78922327-78922346 None:intergenic 55.0%
TGCTAGGCTTCAGAGTCTCG+GGG + chr1_1:78922480-78922499 Msa0046650:CDS 55.0%
GCAGTATTCGGCAACTCGAC+CGG - chr1_1:78922541-78922560 None:intergenic 55.0%
CGGTGCAAACCAAGCAACAG+AGG + chr1_1:78923629-78923648 Msa0046650:CDS 55.0%
ATGGACAGCCGTGCTACAAC+CGG - chr1_1:78923699-78923718 None:intergenic 55.0%
GTAAGAAGGCAGCTTGGGCA+CGG + chr1_1:78923867-78923886 Msa0046650:CDS 55.0%
TGTAAGGCCACCAAGGTGAG+TGG - chr1_1:78923979-78923998 None:intergenic 55.0%
AAGCTTGCGGTTTCTGCGTC+AGG + chr1_1:78924010-78924029 Msa0046650:CDS 55.0%
ATGGGCAGACTCCATCTCCT+TGG + chr1_1:78924255-78924274 Msa0046650:intron 55.0%
CTGGTCGTCTGCTCCAATAG+CGG + chr1_1:78924298-78924317 Msa0046650:intron 55.0%
CCCCCCGCTAAAGAAGTAGA+AGG - chr1_1:78924562-78924581 None:intergenic 55.0%
! GCTCGGTATGCTGTCCCTTT+TGG + chr1_1:78924851-78924870 Msa0046650:CDS 55.0%
AGCCATCTCCCCTTCCTGAA+AGG + chr1_1:78924948-78924967 Msa0046650:CDS 55.0%
GGTCCTCCTAGGGTACAAAC+TGG - chr1_1:78924998-78925017 None:intergenic 55.0%
GCCTTCTCCTCCCCCTAATT+TGG + chr1_1:78925740-78925759 Msa0046650:intron 55.0%
GCCAAATTAGGGGGAGGAGA+AGG - chr1_1:78925744-78925763 None:intergenic 55.0%
CTCAGCTCCTTCATAGAGGC+TGG + chr1_1:78925902-78925921 Msa0046650:exon 55.0%
CGATGCTCATTGCATGGCTG+AGG + chr1_1:78926125-78926144 Msa0046650:three_prime_UTR 55.0%
!! CCGATGAAAGGCGTCGGGAT+AGG - chr1_1:78922321-78922340 None:intergenic 60.0%
TTCCTCACCTTGGGGTTGGG+AGG + chr1_1:78923178-78923197 Msa0046650:intron 60.0%
TCCTCACCTTGGGGTTGGGA+GGG + chr1_1:78923179-78923198 Msa0046650:intron 60.0%
CGCTATTGGAGCAGACGACC+AGG - chr1_1:78924300-78924319 None:intergenic 60.0%
TTGGCAGTGGCACCAGCACA+TGG + chr1_1:78924522-78924541 Msa0046650:intron 60.0%
TAGCGGGGGGCTGTATCTCT+TGG + chr1_1:78924572-78924591 Msa0046650:intron 60.0%
AGCGGGGGGCTGTATCTCTT+GGG + chr1_1:78924573-78924592 Msa0046650:intron 60.0%
TAGGAAGGTGGGGGTAGCTG+AGG + chr1_1:78925426-78925445 Msa0046650:intron 60.0%
AGGAAGGTGGGGGTAGCTGA+GGG + chr1_1:78925427-78925446 Msa0046650:intron 60.0%
GTCGCGGAGACGGGAAAGTG+GGG - chr1_1:78922278-78922297 None:intergenic 65.0%
GGTCGCGGAGACGGGAAAGT+GGG - chr1_1:78922279-78922298 None:intergenic 65.0%
TGGTCGCGGAGACGGGAAAG+TGG - chr1_1:78922280-78922299 None:intergenic 65.0%
TTCGGCAACTCGACCGGTCC+AGG - chr1_1:78922535-78922554 None:intergenic 65.0%
CCTCACCTTGGGGTTGGGAG+GGG + chr1_1:78923180-78923199 Msa0046650:intron 65.0%
CTCACCTTGGGGTTGGGAGG+GGG + chr1_1:78923181-78923200 Msa0046650:intron 65.0%
TCACCTTGGGGTTGGGAGGG+GGG + chr1_1:78923182-78923201 Msa0046650:intron 65.0%
CAGTGGCACCAGCACATGGC+TGG + chr1_1:78924526-78924545 Msa0046650:intron 65.0%
GCAAGCAGCCAGCCATGTGC+TGG - chr1_1:78924537-78924556 None:intergenic 65.0%
CCCCTCCCAACCCCAAGGTG+AGG - chr1_1:78923183-78923202 None:intergenic 70.0%
CACCTTGGGGTTGGGAGGGG+GGG + chr1_1:78923183-78923202 Msa0046650:intron 70.0%
AACCCCCCCTCCCAACCCCA+AGG - chr1_1:78923188-78923207 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78922114 78926329 78922114 ID=Msa0046650;Name=Msa0046650
chr1_1 mRNA 78922114 78926329 78922114 ID=Msa0046650-mRNA-1;Parent=Msa0046650;Name=Msa0046650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=61|1|1|1|1|1|4|412|513
chr1_1 exon 78922114 78922633 78922114 ID=Msa0046650-mRNA-1:exon:27156;Parent=Msa0046650-mRNA-1
chr1_1 exon 78923546 78924031 78923546 ID=Msa0046650-mRNA-1:exon:27157;Parent=Msa0046650-mRNA-1
chr1_1 exon 78924842 78925354 78924842 ID=Msa0046650-mRNA-1:exon:27158;Parent=Msa0046650-mRNA-1
chr1_1 exon 78925834 78926329 78925834 ID=Msa0046650-mRNA-1:exon:27159;Parent=Msa0046650-mRNA-1
chr1_1 five_prime_UTR 78922114 78922174 78922114 ID=Msa0046650-mRNA-1:five_prime_utr;Parent=Msa0046650-mRNA-1
chr1_1 CDS 78922175 78922633 78922175 ID=Msa0046650-mRNA-1:cds;Parent=Msa0046650-mRNA-1
chr1_1 CDS 78923546 78924031 78923546 ID=Msa0046650-mRNA-1:cds;Parent=Msa0046650-mRNA-1
chr1_1 CDS 78924842 78925354 78924842 ID=Msa0046650-mRNA-1:cds;Parent=Msa0046650-mRNA-1
chr1_1 CDS 78925834 78925917 78925834 ID=Msa0046650-mRNA-1:cds;Parent=Msa0046650-mRNA-1
chr1_1 three_prime_UTR 78925918 78926329 78925918 ID=Msa0046650-mRNA-1:three_prime_utr;Parent=Msa0046650-mRNA-1
Gene Sequence

>Msa0046650

ATGGAAAATTCACCAAACCCTAACAATCCCAAACCCAAAGAAGAAGTCAACGAACACGAAGAAGAAGAAGAAGAAGATGATGATGACGATGTTCCACAATCCCCACTTTCCCGTCTCCGCGACCAAAAATTCAAACTCGAAACCCTATCCCGACGCCTTTCATCGGAGCTAGTTCCAATCCGAGTTCACGACGTGATAATTCGCGGCAACACGAAAACCAAAGATTGGGTGATCGAAGCTGAACTTGAGGGAATCGAAGATGTTACCACCATGCAAGAGCTTATTCGTGCATCCGAGATTGTGCTTGCTAGGCTTCAGAGTCTCGGGGTTTTTGAATCTAGTAAGATTAGTCTTGAGCCTGGACCGGTCGAGTTGCCGAATACTGCAAATGTTGTTGTTGATATTGTTGAGGCTGCTAGTAGAGTTTCTGGTGAATTTGGTGTTTATACCAAACCCGCGACTAGTTCTTGGACTGGTGAAGGTACTATTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCTTCTTTGGCTTACGGTGCAAACCAAGCAACAGAGGTGAGTGTAGGGTTATATGCCCCTCGACTTAAAGGAACTTCAAATCCGGTTGTAGCACGGCTGTCCATGCTTTCCCAAGATTGGCAGGAGTTTTCTTCGTACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATCTCAACAAAGCACCATGATTTGACATACACTTTTGGATGGCGTACCTTAACGGATCCATTGCAAATGGCATCCAGGTCTGTAAGAAGGCAGCTTGGGCACGGTTTGTTATCATCTTTGAAGTATACGTTTAAAATTGATAGGAGAAACTCACCAATTAGGCCCACAAAAGGACTTGCTTTTGTTTCTACCACTCACCTTGGTGGCCTTACACCAGATAATCGAAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGCTCGGTATGCTGTCCCTTTTGGGTTTTATAATACAGCACTGAACCTAGGGATTTCTGCTGGTGCTATTTTTCCATGGGGACATGGTTTCATGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGTACCCTAGGAGGACCAATGACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTGCTGAACCACGAAGACAAAGCAGAGATGTATTCAATGATGACAATAGTGATTCCTCTAAATGGGACTCCATTGGAGGAGATCTTTCTGTTACAGCTTTTGCAGACCTCTCTTTTGATCTTCCAATTAGGTGGTTAAGAGAACACGGGGTCCATGGTCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCACTTCTCTCCTCGGAGGTTCCTAGAATCCTTCCGAACATCAGTGGGATGTGGATTTGTTGTTCCTACTAGTCTTTTCCGCCTAGAGGCTAACTACTACTACGTGCTCAAGCAGACTGAACATGATCGTGGTAAAAATGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG
Protein sequence

>Msa0046650

MENSPNPNNPKPKEEVNEHEEEEEEDDDDDVPQSPLSRLRDQKFKLETLSRRLSSELVPIRVHDVIIRGNTKTKDWVIEAELEGIEDVTTMQELIRASEIVLARLQSLGVFESSKISLEPGPVELPNTANVVVDIVEAASRVSGEFGVYTKPATSSWTGEGTIKYKNLLGYGDLWDASLAYGANQATEVSVGLYAPRLKGTSNPVVARLSMLSQDWQEFSSYKEQLLGMSLGLISTKHHDLTYTFGWRTLTDPLQMASRSVRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGLAFVSTTHLGGLTPDNRSLRFLRQEFDARYAVPFGFYNTALNLGISAGAIFPWGHGFMNKPSPLPERFYLGGDFSPVCTLGGPMTLWGFKTRGLGPAEPRRQSRDVFNDDNSDSSKWDSIGGDLSVTAFADLSFDLPIRWLREHGVHGHVFAGAGNTAKLTQNEYKHFSPRRFLESFRTSVGCGFVVPTSLFRLEANYYYVLKQTEHDRGKNGFRFSFSAPS*