AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046900 MtrunA17_Chr7g0274101 96.644 149 5 0 1 149 1 149 2.24e-100 284
Msa0046900 MtrunA17_Chr1g0188171 67.785 149 48 0 1 149 1 149 3.63e-70 208
Msa0046900 MtrunA17_Chr1g0166281 66.443 149 50 0 1 149 1 149 3.29e-69 206
Msa0046900 MtrunA17_Chr5g0440931 64.189 148 53 0 1 148 1 148 3.00e-67 201
Msa0046900 MtrunA17_Chr6g0460211 63.514 148 54 0 1 148 1 148 1.01e-66 199
Msa0046900 MtrunA17_Chr3g0093271 63.514 148 54 0 1 148 52 199 3.62e-66 199
Msa0046900 MtrunA17_Chr7g0254731 62.838 148 55 0 1 148 1 148 4.19e-65 195
Msa0046900 MtrunA17_Chr1g0185001 52.381 147 69 1 1 147 1 146 4.39e-48 152
Msa0046900 MtrunA17_Chr8g0366401 39.865 148 86 1 5 149 10 157 3.21e-34 117
Msa0046900 MtrunA17_Chr5g0398751 36.806 144 89 1 5 148 5 146 4.26e-30 106
Msa0046900 MtrunA17_Chr3g0100541 42.361 144 68 1 1 144 41 169 5.69e-30 107
Msa0046900 MtrunA17_Chr8g0368681 36.486 148 92 1 1 146 1 148 2.45e-28 102
Msa0046900 MtrunA17_Chr4g0062221 34.694 147 88 2 5 146 4 147 1.02e-27 100
Msa0046900 MtrunA17_Chr1g0161211 39.552 134 81 0 15 148 49 182 1.44e-27 101
Msa0046900 MtrunA17_Chr7g0245231 37.762 143 89 0 4 146 22 164 1.61e-27 100
Msa0046900 MtrunA17_Chr7g0245231 44.615 65 36 0 84 148 29 93 8.12e-12 59.7
Msa0046900 MtrunA17_Chr8g0392951 40.000 135 80 1 12 146 24 157 4.15e-26 96.7
Msa0046900 MtrunA17_Chr6g0450921 38.519 135 83 0 12 146 29 163 6.30e-26 96.7
Msa0046900 MtrunA17_Chr6g0450921 41.176 85 49 1 65 148 8 92 1.22e-12 62.0
Msa0046900 MtrunA17_Chr1g0169581 37.226 137 84 1 12 146 4 140 6.55e-26 95.5
Msa0046900 MtrunA17_Chr1g0169581 44.262 61 34 0 83 143 2 62 9.36e-11 56.2
Msa0046900 MtrunA17_Chr7g0256701 41.429 140 77 3 12 146 73 212 7.72e-26 97.4
Msa0046900 MtrunA17_Chr8g0391691 37.956 137 85 0 6 142 30 166 3.32e-25 95.1
Msa0046900 MtrunA17_Chr4g0033601 38.686 137 82 1 12 146 5 141 5.07e-24 90.9
Msa0046900 MtrunA17_Chr5g0402331 37.778 135 76 3 17 147 53 183 2.78e-23 90.1
Msa0046900 MtrunA17_Chr6g0482731 38.406 138 83 2 12 148 26 162 3.77e-23 89.4
Msa0046900 MtrunA17_Chr5g0434951 37.037 135 84 1 12 146 4 137 4.62e-23 88.2
Msa0046900 MtrunA17_Chr1g0200601 40.141 142 82 2 5 146 328 466 4.90e-23 94.0
Msa0046900 MtrunA17_Chr3g0100511 38.621 145 74 1 1 145 41 170 5.88e-23 89.0
Msa0046900 MtrunA17_Chr5g0402361 39.552 134 74 2 17 147 53 182 1.09e-22 91.7
Msa0046900 MtrunA17_Chr5g0402361 38.129 139 70 4 17 147 225 355 6.34e-22 89.7
Msa0046900 MtrunA17_Chr5g0402361 29.586 169 88 4 5 145 116 281 9.01e-13 64.3
Msa0046900 MtrunA17_Chr4g0059951 36.735 147 90 3 1 146 367 511 4.06e-22 91.3
Msa0046900 MtrunA17_Chr1g0157131 35.811 148 89 3 1 146 368 511 4.14e-22 91.3
Msa0046900 MtrunA17_Chr3g0100561 37.931 145 75 1 1 145 41 170 5.36e-22 86.7
Msa0046900 MtrunA17_Chr7g0256171 40.000 140 82 1 11 148 4 143 7.19e-22 85.5
Msa0046900 MtrunA17_Chr7g0242561 34.932 146 94 1 1 146 350 494 9.47e-22 90.1
Msa0046900 MtrunA17_Chr8g0351681 36.242 149 87 3 6 146 43 191 1.21e-21 86.3
Msa0046900 MtrunA17_Chr7g0267751 37.324 142 86 2 5 146 433 571 1.97e-21 89.4
Msa0046900 MtrunA17_Chr3g0131181 37.324 142 86 2 5 146 327 465 2.18e-21 89.4
Msa0046900 MtrunA17_Chr8g0385341 36.301 146 90 2 1 146 324 466 3.96e-21 88.6
Msa0046900 MtrunA17_Chr1g0176751 35.616 146 91 2 1 146 418 560 6.62e-21 87.8
Msa0046900 MtrunA17_Chr3g0100471 53.333 75 35 0 1 75 41 115 6.73e-21 82.0
Msa0046900 MtrunA17_Chr5g0448721 37.838 148 85 4 1 146 390 532 7.97e-21 87.8
Msa0046900 MtrunA17_Chr7g0245911 34.194 155 93 3 1 146 36 190 1.80e-20 83.2
Msa0046900 MtrunA17_Chr4g0033371 35.616 146 92 2 1 146 366 509 3.72e-20 85.9
Msa0046900 MtrunA17_Chr2g0329371 40.278 144 72 3 12 146 64 202 4.71e-20 82.4
Msa0046900 MtrunA17_Chr1g0170281 34.932 146 92 2 1 146 412 554 6.36e-20 85.1
Msa0046900 MtrunA17_Chr3g0116141 32.836 134 89 1 13 146 6 138 7.91e-20 80.1
Msa0046900 MtrunA17_Chr3g0116151 32.836 134 89 1 13 146 7 139 8.03e-20 80.1
Msa0046900 MtrunA17_Chr1g0169621 32.075 159 81 2 17 148 9 167 8.91e-20 80.5
Msa0046900 MtrunA17_Chr3g0111371 35.556 135 83 1 12 146 5 135 8.97e-20 79.7
Msa0046900 MtrunA17_Chr3g0111371 43.333 60 34 0 83 142 3 62 5.41e-11 57.0
Msa0046900 MtrunA17_Chr4g0057661 33.813 139 83 2 12 146 6 139 2.65e-19 78.6
Msa0046900 MtrunA17_Chr5g0397101 35.811 148 89 3 1 146 360 503 5.34e-19 82.4
Msa0046900 MtrunA17_Chr4g0057641 34.532 139 82 2 12 146 6 139 6.18e-19 77.8
Msa0046900 MtrunA17_Chr4g0044961 32.867 143 94 1 4 146 49 189 6.81e-19 79.0
Msa0046900 MtrunA17_Chr7g0257751 32.432 148 99 1 1 148 352 498 1.82e-18 80.9
Msa0046900 MtrunA17_Chr4g0057651 33.813 139 83 2 12 146 6 139 2.01e-18 76.3
Msa0046900 MtrunA17_Chr5g0444171 33.333 147 94 3 1 146 386 529 4.53e-18 79.7
Msa0046900 MtrunA17_Chr7g0225921 30.496 141 96 2 8 147 2 141 4.55e-18 75.5
Msa0046900 MtrunA17_Chr4g0074811 32.653 147 95 3 1 146 385 528 5.34e-18 79.3
Msa0046900 MtrunA17_Chr8g0387671 34.459 148 91 3 1 146 360 503 6.45e-18 79.3
Msa0046900 MtrunA17_Chr4g0064231 37.255 153 78 3 12 146 64 216 3.03e-17 75.1
Msa0046900 MtrunA17_Chr1g0173541 30.405 148 102 1 1 148 346 492 3.09e-17 77.4
Msa0046900 MtrunA17_Chr6g0459231 27.857 140 100 1 8 147 4 142 7.30e-17 72.4
Msa0046900 MtrunA17_Chr5g0409441 29.851 134 94 0 9 142 19 152 4.88e-16 70.5
Msa0046900 MtrunA17_Chr3g0098951 31.169 154 95 3 1 146 377 527 5.43e-16 73.9
Msa0046900 MtrunA17_Chr3g0100461 53.704 54 25 0 93 146 53 106 5.82e-16 69.3
Msa0046900 MtrunA17_Chr0c02g0489761 31.507 146 98 2 1 146 372 515 7.10e-16 73.6
Msa0046900 MtrunA17_Chr7g0245371 32.394 142 84 2 17 146 29 170 2.37e-15 69.3
Msa0046900 MtrunA17_Chr5g0441691 32.192 146 97 2 1 146 362 505 2.53e-15 72.0
Msa0046900 MtrunA17_Chr1g0176421 28.090 178 93 3 1 146 455 629 8.95e-15 70.5
Msa0046900 MtrunA17_Chr8g0373691 30.827 133 90 2 15 146 56 187 1.96e-14 67.0
Msa0046900 MtrunA17_Chr8g0373691 42.254 71 41 0 76 146 44 114 3.82e-13 63.5
Msa0046900 MtrunA17_Chr3g0100501 30.075 133 74 3 13 144 17 131 8.15e-14 64.3
Msa0046900 MtrunA17_Chr5g0405421 30.128 156 89 5 1 146 395 540 9.38e-14 67.4
Msa0046900 MtrunA17_Chr4g0074791 31.973 147 85 5 1 146 390 522 9.47e-14 67.4
Msa0046900 MtrunA17_Chr4g0068501 28.058 139 96 2 12 146 16 154 1.01e-13 64.7
Msa0046900 MtrunA17_Chr5g0396261 30.631 111 75 1 37 145 2 112 2.00e-13 62.8
Msa0046900 MtrunA17_Chr4g0042491 40.541 74 44 0 73 146 102 175 1.09e-12 62.4
Msa0046900 MtrunA17_Chr3g0121191 29.771 131 82 1 17 147 98 218 1.37e-12 62.8
Msa0046900 MtrunA17_Chr3g0125311 30.822 146 83 4 17 147 18 160 4.18e-12 60.5
Msa0046900 MtrunA17_Chr1g0160151 29.078 141 84 2 17 147 27 161 5.06e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046900 AT4G14640.1 66.897 145 48 0 5 149 6 150 1.11e-67 202
Msa0046900 AT1G66410.1 64.189 148 53 0 1 148 1 148 3.32e-67 201
Msa0046900 AT5G37780.1 64.189 148 53 0 1 148 1 148 3.32e-67 201
Msa0046900 AT3G56800.1 64.189 148 53 0 1 148 1 148 3.87e-67 201
Msa0046900 AT2G41110.1 64.189 148 53 0 1 148 1 148 3.87e-67 201
Msa0046900 AT2G27030.1 64.189 148 53 0 1 148 1 148 3.87e-67 201
Msa0046900 AT2G27030.3 64.189 148 53 0 1 148 1 148 6.92e-67 201
Msa0046900 AT3G43810.1 63.514 148 54 0 1 148 1 148 1.40e-66 199
Msa0046900 AT3G22930.1 67.832 143 46 0 5 147 28 170 3.40e-66 199
Msa0046900 AT3G43810.2 63.514 148 54 0 1 148 1 148 3.44e-66 200
Msa0046900 AT5G21274.1 62.838 148 55 0 1 148 1 148 3.82e-66 198
Msa0046900 AT2G41110.2 59.375 160 53 1 1 148 1 160 2.49e-63 191
Msa0046900 AT5G37780.2 58.282 163 53 1 1 148 1 163 9.74e-63 190
Msa0046900 AT5G37780.3 54.598 174 53 1 1 148 1 174 5.12e-61 186
Msa0046900 AT1G66410.2 60.127 158 53 1 1 148 1 158 4.29e-60 183
Msa0046900 AT4G14640.2 67.742 124 40 0 26 149 9 132 5.32e-59 179
Msa0046900 AT5G37780.4 63.415 123 45 0 26 148 13 135 1.44e-55 171
Msa0046900 AT1G66410.4 62.500 112 42 0 37 148 1 112 5.94e-49 153
Msa0046900 AT1G66410.3 62.500 112 42 0 37 148 1 112 5.94e-49 153
Msa0046900 AT3G43810.4 62.500 112 42 0 37 148 1 112 6.48e-49 153
Msa0046900 AT3G43810.3 62.500 112 42 0 37 148 1 112 6.48e-49 153
Msa0046900 AT4G14640.3 68.932 103 32 0 5 107 6 108 5.86e-47 149
Msa0046900 AT3G22930.2 67.647 102 33 0 5 106 28 129 1.95e-44 142
Msa0046900 AT3G22930.2 43.548 62 35 0 85 146 35 96 2.23e-12 60.8
Msa0046900 AT3G51920.1 48.322 149 77 0 1 149 1 149 7.28e-43 139
Msa0046900 AT2G41090.1 47.297 148 75 1 1 148 1 145 5.93e-40 133
Msa0046900 AT2G41100.7 45.455 165 73 1 1 148 55 219 4.06e-39 134
Msa0046900 AT2G41100.7 42.063 126 57 2 37 146 2 127 1.25e-25 99.0
Msa0046900 AT2G41100.7 45.833 96 48 2 1 95 144 236 1.14e-17 77.8
Msa0046900 AT2G41100.6 45.455 165 73 1 1 148 55 219 4.06e-39 134
Msa0046900 AT2G41100.6 42.063 126 57 2 37 146 2 127 1.25e-25 99.0
Msa0046900 AT2G41100.6 45.833 96 48 2 1 95 144 236 1.14e-17 77.8
Msa0046900 AT2G41100.3 45.455 165 73 1 1 148 55 219 4.06e-39 134
Msa0046900 AT2G41100.3 42.063 126 57 2 37 146 2 127 1.25e-25 99.0
Msa0046900 AT2G41100.3 45.833 96 48 2 1 95 144 236 1.14e-17 77.8
Msa0046900 AT2G41100.4 45.455 165 73 1 1 148 90 254 1.06e-38 134
Msa0046900 AT2G41100.4 44.444 162 74 2 1 146 1 162 1.58e-38 133
Msa0046900 AT2G41100.4 45.833 96 48 2 1 95 179 271 1.86e-17 77.4
Msa0046900 AT2G41100.1 45.455 165 73 1 1 148 90 254 1.06e-38 134
Msa0046900 AT2G41100.1 44.444 162 74 2 1 146 1 162 1.58e-38 133
Msa0046900 AT2G41100.1 45.833 96 48 2 1 95 179 271 1.86e-17 77.4
Msa0046900 AT1G32250.1 36.184 152 91 1 1 146 5 156 8.76e-30 106
Msa0046900 AT3G50360.1 41.481 135 79 0 12 146 27 161 3.16e-29 105
Msa0046900 AT3G50360.1 39.130 69 42 0 80 148 22 90 5.01e-11 58.2
Msa0046900 AT1G66400.1 40.000 135 79 1 15 147 18 152 2.43e-28 102
Msa0046900 AT2G41100.2 44.882 127 53 1 39 148 3 129 2.70e-28 103
Msa0046900 AT2G41100.2 45.833 96 48 2 1 95 54 146 2.09e-18 78.2
Msa0046900 AT1G12310.1 35.616 146 92 1 3 148 4 147 2.72e-28 102
Msa0046900 AT1G62820.1 35.616 146 92 1 3 148 4 147 4.06e-28 101
Msa0046900 AT3G03000.1 39.041 146 88 1 5 149 13 158 2.58e-27 100
Msa0046900 AT4G37010.1 37.778 135 84 0 12 146 27 161 8.18e-27 99.0
Msa0046900 AT4G37010.2 37.778 135 84 0 12 146 31 165 9.67e-27 99.0
Msa0046900 AT1G18530.1 34.507 142 91 1 7 146 2 143 2.80e-26 97.4
Msa0046900 AT3G10190.1 41.606 137 77 3 12 146 70 205 1.55e-25 97.1
Msa0046900 AT3G25600.1 33.333 141 92 1 8 146 8 148 6.89e-25 94.0
Msa0046900 AT2G41410.1 38.298 141 84 3 12 149 70 210 6.04e-24 92.8
Msa0046900 AT5G37770.1 36.765 136 82 1 15 146 20 155 6.08e-24 91.7
Msa0046900 AT5G37770.2 36.765 136 82 1 15 146 20 155 6.08e-24 91.7
Msa0046900 AT5G04870.1 37.671 146 88 2 1 146 444 586 8.76e-24 96.7
Msa0046900 AT1G18210.2 37.037 135 81 1 12 146 23 153 1.88e-23 90.5
Msa0046900 AT1G18210.1 37.037 135 81 1 12 146 23 153 1.88e-23 90.5
Msa0046900 AT5G23580.1 39.041 146 86 2 1 146 316 458 2.39e-23 95.1
Msa0046900 AT2G15680.1 35.000 140 89 1 7 146 45 182 2.81e-23 90.5
Msa0046900 AT3G10660.2 36.986 146 89 2 1 146 480 622 5.47e-23 94.4
Msa0046900 AT3G10660.1 36.986 146 89 2 1 146 480 622 5.47e-23 94.4
Msa0046900 AT1G35670.1 38.732 142 84 2 5 146 324 462 1.05e-22 93.2
Msa0046900 AT5G17470.1 38.060 134 81 1 15 146 5 138 1.73e-22 87.4
Msa0046900 AT1G73630.1 36.296 135 82 1 12 146 20 150 2.91e-22 87.4
Msa0046900 AT1G24620.1 36.232 138 88 0 9 146 34 171 4.54e-22 87.4
Msa0046900 AT3G50770.1 38.571 140 81 2 12 146 64 203 6.51e-22 87.4
Msa0046900 AT2G36180.1 42.222 135 75 2 15 146 3 137 7.78e-22 85.5
Msa0046900 AT4G09570.1 38.028 142 85 2 5 146 323 461 7.99e-22 90.9
Msa0046900 AT1G05990.1 40.580 138 79 2 12 146 5 142 8.85e-22 85.5
Msa0046900 AT4G38230.1 38.356 146 87 2 1 146 174 316 9.36e-22 89.4
Msa0046900 AT4G38230.4 38.356 146 87 2 1 146 318 460 1.89e-21 89.7
Msa0046900 AT4G38230.3 38.356 146 87 2 1 146 318 460 1.89e-21 89.7
Msa0046900 AT4G38230.2 38.356 146 87 2 1 146 348 490 2.04e-21 89.7
Msa0046900 AT2G43290.1 35.915 142 84 2 12 146 65 206 5.59e-21 85.1
Msa0046900 AT2G17290.1 37.671 146 88 2 1 146 379 521 7.58e-21 88.2
Msa0046900 AT2G17290.2 37.671 146 88 2 1 146 379 521 7.58e-21 88.2
Msa0046900 AT4G03290.1 37.857 140 82 2 12 146 5 144 2.11e-20 82.0
Msa0046900 AT1G76040.1 34.247 146 94 2 1 146 167 310 3.09e-20 85.1
Msa0046900 AT1G76040.4 34.247 146 94 2 1 146 167 310 3.09e-20 85.1
Msa0046900 AT2G41100.5 45.263 95 49 1 1 95 1 92 4.10e-20 81.3
Msa0046900 AT2G41100.5 44.737 76 41 1 73 148 1 75 3.80e-16 70.9
Msa0046900 AT1G76040.2 34.247 146 94 2 1 146 405 548 7.73e-20 85.1
Msa0046900 AT4G12860.1 38.406 138 83 1 11 146 4 141 8.39e-20 80.5
Msa0046900 AT2G38910.1 34.932 146 92 2 1 146 428 570 1.26e-19 84.7
Msa0046900 AT3G07490.1 36.496 137 85 1 12 146 5 141 1.74e-19 79.7
Msa0046900 AT3G59440.1 37.594 133 80 2 16 146 55 186 2.30e-19 80.5
Msa0046900 AT4G35310.2 34.932 146 92 2 1 146 391 533 3.33e-19 83.6
Msa0046900 AT4G35310.1 34.932 146 92 2 1 146 391 533 3.33e-19 83.6
Msa0046900 AT4G04700.1 37.063 143 86 3 5 146 329 468 7.67e-19 82.4
Msa0046900 AT3G51850.1 32.192 146 98 1 1 146 348 492 8.04e-19 82.4
Msa0046900 AT4G21940.1 34.694 147 92 3 1 146 395 538 1.20e-18 81.6
Msa0046900 AT4G21940.2 34.694 147 92 3 1 146 395 538 1.34e-18 81.6
Msa0046900 AT5G12480.2 32.886 149 98 2 1 148 259 406 1.57e-18 81.3
Msa0046900 AT5G12480.1 32.886 149 98 2 1 148 353 500 1.88e-18 81.3
Msa0046900 AT3G03400.1 34.400 125 80 1 17 139 10 134 2.15e-18 76.6
Msa0046900 AT4G04695.1 34.965 143 89 3 5 146 329 468 2.66e-18 80.9
Msa0046900 AT4G04720.2 34.014 147 93 3 1 146 373 516 3.16e-18 80.5
Msa0046900 AT4G04720.1 34.014 147 93 3 1 146 373 516 3.16e-18 80.5
Msa0046900 AT1G74740.1 36.090 133 82 3 17 148 369 499 5.63e-18 79.7
Msa0046900 AT3G57530.1 31.973 147 96 3 1 146 357 500 1.85e-17 78.6
Msa0046900 AT2G41860.1 33.784 148 93 2 1 146 348 492 1.88e-17 78.2
Msa0046900 AT2G41860.2 33.784 148 93 2 1 146 348 492 1.89e-17 78.2
Msa0046900 AT5G19360.1 34.247 146 94 2 1 146 362 505 2.20e-17 78.2
Msa0046900 AT3G20410.2 34.532 139 89 2 8 146 392 528 2.22e-17 78.2
Msa0046900 AT3G20410.1 34.532 139 89 2 8 146 392 528 2.22e-17 78.2
Msa0046900 AT1G61950.1 31.944 144 92 3 5 146 397 536 2.84e-17 77.8
Msa0046900 AT1G18890.1 38.346 133 79 3 17 148 373 503 3.22e-17 77.8
Msa0046900 AT4G04740.4 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT4G04740.6 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT4G04740.5 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT4G04740.3 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT4G04740.1 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT4G04740.7 33.566 143 91 3 5 146 366 505 5.67e-17 77.0
Msa0046900 AT5G19450.2 31.544 149 100 2 1 148 351 498 6.42e-17 76.6
Msa0046900 AT5G19450.1 31.544 149 100 2 1 148 351 498 6.42e-17 76.6
Msa0046900 AT5G12180.1 34.247 146 94 2 1 146 367 510 7.40e-17 76.6
Msa0046900 AT1G50700.1 33.813 139 90 2 8 146 374 510 8.12e-17 76.6
Msa0046900 AT4G23650.1 32.432 148 94 3 1 146 372 515 1.80e-16 75.5
Msa0046900 AT4G23650.1 40.000 85 45 2 65 143 357 441 1.89e-11 61.2
Msa0046900 AT1G76640.1 33.088 136 88 2 14 146 23 158 4.18e-16 71.2
Msa0046900 AT5G44460.1 36.486 148 78 5 16 149 32 177 4.70e-16 71.6
Msa0046900 AT1G76650.1 35.821 134 84 2 14 146 44 176 7.08e-16 70.9
Msa0046900 AT1G76650.3 35.821 134 84 2 14 146 44 176 7.08e-16 70.9
Msa0046900 AT2G31500.1 30.201 149 100 3 1 146 360 507 1.35e-15 73.2
Msa0046900 AT4G20780.1 34.416 154 79 3 17 149 34 186 1.66e-15 70.5
Msa0046900 AT5G42380.1 31.655 139 94 1 9 146 46 184 4.45e-15 68.9
Msa0046900 AT5G66210.1 28.947 152 96 4 1 146 358 503 1.98e-14 69.7
Msa0046900 AT5G66210.2 28.947 152 96 4 1 146 358 503 1.98e-14 69.7
Msa0046900 AT2G17890.1 29.530 149 91 5 5 146 408 549 2.27e-14 69.7
Msa0046900 AT3G51850.2 33.636 110 72 1 1 110 348 456 2.55e-14 69.3
Msa0046900 AT3G03410.1 28.788 132 85 1 17 148 7 129 3.94e-14 65.5
Msa0046900 AT4G04710.2 31.293 147 97 3 1 146 326 469 6.03e-14 68.2
Msa0046900 AT4G04710.3 31.293 147 97 3 1 146 312 455 6.27e-14 68.2
Msa0046900 AT4G04710.1 31.293 147 97 3 1 146 339 482 7.43e-14 68.2
Msa0046900 AT1G76650.2 35.075 134 75 4 14 146 44 166 9.25e-14 65.1
Msa0046900 AT1G21550.1 32.624 141 87 3 17 149 15 155 6.30e-13 62.8
Msa0046900 AT4G04710.4 31.544 149 96 4 1 146 339 484 1.08e-12 64.7
Msa0046900 AT4G04740.2 34.545 110 71 1 5 114 366 474 1.08e-12 64.7
Msa0046900 AT1G50700.2 29.091 165 89 3 8 146 374 536 1.95e-12 63.9
Msa0046900 AT1G76040.3 34.653 101 65 1 1 101 405 504 9.16e-12 62.0
Msa0046900 AT5G49480.1 29.921 127 83 2 12 132 18 144 3.09e-11 58.5
Msa0046900 AT5G66210.5 31.304 115 73 3 1 109 358 472 3.86e-11 60.1
Msa0046900 AT5G66210.3 27.481 131 89 3 1 125 358 488 9.89e-11 58.9

Find 44 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCAGATTGGTGAGTTTC+TGG 0.177205 1_1:-79329089 Msa0046900:CDS
TGAAGCAGAAGAGGAATTTA+AGG 0.223314 1_1:-79327792 Msa0046900:CDS
CAAGAATTCCCGGAATTCTA+TGG 0.299324 1_1:+79328817 None:intergenic
AGGAATTTAAGGAAGCTTTC+AGG 0.305931 1_1:-79327781 Msa0046900:CDS
AATAGATGTCAGCTAAATAA+TGG 0.356859 1_1:-79327396 Msa0046900:three_prime_UTR
AAAACGGAACCATAGAATTC+CGG 0.375640 1_1:-79328826 Msa0046900:CDS
GTGAGAGTCAATAAAAGATA+TGG 0.378366 1_1:+79327427 None:intergenic
AATGATGAAAACGGCTGATC+TGG 0.388087 1_1:-79327576 Msa0046900:CDS
TGCATAACCATTGAAGAATT+AGG 0.391756 1_1:-79328926 Msa0046900:CDS
AAACGGAACCATAGAATTCC+GGG 0.420066 1_1:-79328825 Msa0046900:CDS
GGAATTTAAGGAAGCTTTCA+GGG 0.435182 1_1:-79327780 Msa0046900:CDS
TGCAGTGCCTAATTCTTCAA+TGG 0.437914 1_1:+79328919 None:intergenic
AAAGGTGACAGACGAAGAAC+TGG 0.439478 1_1:-79327603 Msa0046900:CDS
TTGATTATCAAGAGTTCGTC+AGG 0.441512 1_1:-79327538 Msa0046900:CDS
CCATGAGATTCAAGAATTCC+CGG 0.442127 1_1:+79328807 None:intergenic
GAGCCAGAAAATTTGAATAG+TGG 0.444381 1_1:-79327295 Msa0046900:three_prime_UTR
CCGGGAATTCTTGAATCTCA+TGG 0.483560 1_1:-79328807 Msa0046900:CDS
AAAGGAAAGTGAAGCAGAAG+AGG 0.484918 1_1:-79327801 Msa0046900:intron
CACCAATCTGCTCTTCCCTC+AGG 0.486518 1_1:+79329098 None:intergenic
AGCCAGAAAATTTGAATAGT+GGG 0.494142 1_1:-79327294 None:intergenic
TAATTCAATTATACCTCACT+TGG 0.496027 1_1:+79327725 None:intergenic
ATTGAGTACCATCGGAGAAA+AGG 0.501983 1_1:-79327621 Msa0046900:CDS
TCTCATGGCAAGAAAACTAA+AGG 0.521386 1_1:-79328792 Msa0046900:intron
TATGATGAATGAAGTAGATA+CGG 0.527589 1_1:-79328852 Msa0046900:CDS
TTCCCTCAGGAAGTCGCTCA+TGG 0.529672 1_1:+79329111 None:intergenic
ACTGGAGCAAATGATGAAAA+CGG 0.534724 1_1:-79327585 Msa0046900:CDS
ATCTTTGTCAAGAAGAGAGA+AGG 0.545042 1_1:+79329063 None:intergenic
CTTCTTGACAAAGATAGAGA+TGG 0.572474 1_1:-79329055 Msa0046900:intron
ATTTGCAACTCCTCCAACGT+AGG 0.588877 1_1:+79328875 None:intergenic
TTCCTGAGGGAAGAGCAGAT+TGG 0.589731 1_1:-79329100 Msa0046900:CDS
GTGTTCGACAAAGATAAAGA+TGG 0.599515 1_1:-79327758 Msa0046900:CDS
TCACCATGAGCGACTTCCTG+AGG 0.602182 1_1:-79329114 None:intergenic
CACCATGAGCGACTTCCTGA+GGG 0.605080 1_1:-79329113 None:intergenic
AGAGTTCGTCAGGATGATGT+TGG 0.606190 1_1:-79327528 Msa0046900:CDS
GCCAGAAAATTTGAATAGTG+GGG 0.609646 1_1:-79327293 None:intergenic
AGGTCAGTATTGAGTACCAT+CGG 0.612168 1_1:-79327629 Msa0046900:CDS
ACGGCTGATCTGGATGGTGA+CGG 0.620746 1_1:-79327566 Msa0046900:CDS
ATTAGATGAAAATCCTACGT+TGG 0.627061 1_1:-79328888 Msa0046900:CDS
AGATGAAAATCCTACGTTGG+AGG 0.632700 1_1:-79328885 Msa0046900:CDS
TGGTTACATATCACCAAGTG+AGG 0.641308 1_1:-79327738 Msa0046900:intron
CCAGAAAATTTGAATAGTGG+GGG 0.644908 1_1:-79327292 None:intergenic
ATGAAAACGGCTGATCTGGA+TGG 0.649640 1_1:-79327572 Msa0046900:CDS
GAGTGTCATGTACTCAGTGG+CGG 0.668429 1_1:-79327317 Msa0046900:three_prime_UTR
AAAGAGTGTCATGTACTCAG+TGG 0.704882 1_1:-79327320 Msa0046900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCAAAAAATAATAATCA+TGG + chr1_1:79328146-79328165 None:intergenic 10.0%
!!! ATTTTATTAATTGTGAATAA+AGG - chr1_1:79328585-79328604 Msa0046900:intron 10.0%
!!! TCTCATTTTTATTTATTTTT+GGG - chr1_1:79328922-79328941 Msa0046900:CDS 10.0%
!! TATTCAAAAAATAATAATCA+TGG + chr1_1:79328146-79328165 None:intergenic 10.0%
!!! ATTTTATTAATTGTGAATAA+AGG - chr1_1:79328585-79328604 Msa0046900:intron 10.0%
!!! TCTCATTTTTATTTATTTTT+GGG - chr1_1:79328922-79328941 Msa0046900:CDS 10.0%
!!! CTCTCATTTTTATTTATTTT+TGG - chr1_1:79328921-79328940 Msa0046900:CDS 15.0%
!!! CTCTCATTTTTATTTATTTT+TGG - chr1_1:79328921-79328940 Msa0046900:CDS 15.0%
!! AAGGGTTATAATATAAATGT+AGG + chr1_1:79327388-79327407 None:intergenic 20.0%
!!! TTAATAGGTTGAGATTTAAT+TGG - chr1_1:79327693-79327712 Msa0046900:intron 20.0%
!! GATGCAAAATAAATAATTCA+AGG + chr1_1:79327839-79327858 None:intergenic 20.0%
!! AAATGAGGTGAAAAATATAT+GGG + chr1_1:79327888-79327907 None:intergenic 20.0%
!! TAAATGAGGTGAAAAATATA+TGG + chr1_1:79327889-79327908 None:intergenic 20.0%
!! TTATTAGATCATCATAAATG+AGG + chr1_1:79327903-79327922 None:intergenic 20.0%
!! GATGATCTAATAAACATTTA+TGG - chr1_1:79327910-79327929 Msa0046900:intron 20.0%
!! AAGAAAACTAGAAAAGTTTA+AGG + chr1_1:79327954-79327973 None:intergenic 20.0%
!!! AATTTAAGATCATCAATGAT+AGG + chr1_1:79328285-79328304 None:intergenic 20.0%
!! ACAATGTAACAAAAAAATAG+TGG - chr1_1:79328328-79328347 Msa0046900:intron 20.0%
!! TCATCTATTTATATGCTAAA+AGG - chr1_1:79328521-79328540 Msa0046900:intron 20.0%
!! AAGGGTTATAATATAAATGT+AGG + chr1_1:79327388-79327407 None:intergenic 20.0%
!!! TTAATAGGTTGAGATTTAAT+TGG - chr1_1:79327693-79327712 Msa0046900:intron 20.0%
!! GATGCAAAATAAATAATTCA+AGG + chr1_1:79327839-79327858 None:intergenic 20.0%
!! AAATGAGGTGAAAAATATAT+GGG + chr1_1:79327888-79327907 None:intergenic 20.0%
!! TAAATGAGGTGAAAAATATA+TGG + chr1_1:79327889-79327908 None:intergenic 20.0%
!! TTATTAGATCATCATAAATG+AGG + chr1_1:79327903-79327922 None:intergenic 20.0%
!! GATGATCTAATAAACATTTA+TGG - chr1_1:79327910-79327929 Msa0046900:intron 20.0%
!! AAGAAAACTAGAAAAGTTTA+AGG + chr1_1:79327954-79327973 None:intergenic 20.0%
!!! AATTTAAGATCATCAATGAT+AGG + chr1_1:79328285-79328304 None:intergenic 20.0%
!! ACAATGTAACAAAAAAATAG+TGG - chr1_1:79328328-79328347 Msa0046900:intron 20.0%
!! TCATCTATTTATATGCTAAA+AGG - chr1_1:79328521-79328540 Msa0046900:intron 20.0%
! CAAATTACACAAAGAAAGAA+GGG + chr1_1:79327406-79327425 None:intergenic 25.0%
! TATGATGAATGAAGTAGATA+CGG - chr1_1:79327552-79327571 Msa0046900:CDS 25.0%
! TATTAAAATAAATGCAGTGG+AGG + chr1_1:79327679-79327698 None:intergenic 25.0%
!!! TCCACTGCATTTATTTTAAT+AGG - chr1_1:79327678-79327697 Msa0046900:intron 25.0%
! ACCTATTAAAATAAATGCAG+TGG + chr1_1:79327682-79327701 None:intergenic 25.0%
! ATAAGTATACGAACGAATAT+TGG + chr1_1:79327804-79327823 None:intergenic 25.0%
! AATAAATAATTCAAGGTAGC+CGG + chr1_1:79327832-79327851 None:intergenic 25.0%
! ACATCAAAATACATAAGTTG+CGG - chr1_1:79328061-79328080 Msa0046900:intron 25.0%
!! AAGACATATAAGTTGAATGT+AGG - chr1_1:79328093-79328112 Msa0046900:intron 25.0%
!! AGACATATAAGTTGAATGTA+GGG - chr1_1:79328094-79328113 Msa0046900:intron 25.0%
!!! GCTAAAAGGACATTTAATTT+TGG - chr1_1:79328535-79328554 Msa0046900:intron 25.0%
! TAATTCAATTATACCTCACT+TGG + chr1_1:79328682-79328701 None:intergenic 25.0%
! AATAGATGTCAGCTAAATAA+TGG - chr1_1:79329008-79329027 Msa0046900:intron 25.0%
! CAAATTACACAAAGAAAGAA+GGG + chr1_1:79327406-79327425 None:intergenic 25.0%
! TATGATGAATGAAGTAGATA+CGG - chr1_1:79327552-79327571 Msa0046900:CDS 25.0%
! TATTAAAATAAATGCAGTGG+AGG + chr1_1:79327679-79327698 None:intergenic 25.0%
!!! TCCACTGCATTTATTTTAAT+AGG - chr1_1:79327678-79327697 Msa0046900:intron 25.0%
! ACCTATTAAAATAAATGCAG+TGG + chr1_1:79327682-79327701 None:intergenic 25.0%
! ATAAGTATACGAACGAATAT+TGG + chr1_1:79327804-79327823 None:intergenic 25.0%
! AATAAATAATTCAAGGTAGC+CGG + chr1_1:79327832-79327851 None:intergenic 25.0%
! ACATCAAAATACATAAGTTG+CGG - chr1_1:79328061-79328080 Msa0046900:intron 25.0%
!! AAGACATATAAGTTGAATGT+AGG - chr1_1:79328093-79328112 Msa0046900:intron 25.0%
!! AGACATATAAGTTGAATGTA+GGG - chr1_1:79328094-79328113 Msa0046900:intron 25.0%
!!! GCTAAAAGGACATTTAATTT+TGG - chr1_1:79328535-79328554 Msa0046900:intron 25.0%
! TAATTCAATTATACCTCACT+TGG + chr1_1:79328682-79328701 None:intergenic 25.0%
! AATAGATGTCAGCTAAATAA+TGG - chr1_1:79329008-79329027 Msa0046900:intron 25.0%
GCAAATTACACAAAGAAAGA+AGG + chr1_1:79327407-79327426 None:intergenic 30.0%
TGCATAACCATTGAAGAATT+AGG - chr1_1:79327478-79327497 Msa0046900:three_prime_UTR 30.0%
ATTAGATGAAAATCCTACGT+TGG - chr1_1:79327516-79327535 Msa0046900:exon 30.0%
! TAGGTTGAGATTTAATTGGA+TGG - chr1_1:79327697-79327716 Msa0046900:intron 30.0%
GTTCGTATACTTATGTATTC+CGG - chr1_1:79327810-79327829 Msa0046900:intron 30.0%
! CGTGATTTTCATGACAAATA+AGG + chr1_1:79328011-79328030 None:intergenic 30.0%
TGATGATCTTAAATTCGAAG+TGG - chr1_1:79328290-79328309 Msa0046900:intron 30.0%
ATAAGATGACCTAAGATCAA+AGG + chr1_1:79328463-79328482 None:intergenic 30.0%
!! AGGACATTTAATTTTGGATG+AGG - chr1_1:79328541-79328560 Msa0046900:intron 30.0%
GTGAGAGTCAATAAAAGATA+TGG + chr1_1:79328980-79328999 None:intergenic 30.0%
GCAAATTACACAAAGAAAGA+AGG + chr1_1:79327407-79327426 None:intergenic 30.0%
TGCATAACCATTGAAGAATT+AGG - chr1_1:79327478-79327497 Msa0046900:three_prime_UTR 30.0%
ATTAGATGAAAATCCTACGT+TGG - chr1_1:79327516-79327535 Msa0046900:exon 30.0%
! TAGGTTGAGATTTAATTGGA+TGG - chr1_1:79327697-79327716 Msa0046900:intron 30.0%
GTTCGTATACTTATGTATTC+CGG - chr1_1:79327810-79327829 Msa0046900:intron 30.0%
! CGTGATTTTCATGACAAATA+AGG + chr1_1:79328011-79328030 None:intergenic 30.0%
TGATGATCTTAAATTCGAAG+TGG - chr1_1:79328290-79328309 Msa0046900:intron 30.0%
ATAAGATGACCTAAGATCAA+AGG + chr1_1:79328463-79328482 None:intergenic 30.0%
!! AGGACATTTAATTTTGGATG+AGG - chr1_1:79328541-79328560 Msa0046900:intron 30.0%
GTGAGAGTCAATAAAAGATA+TGG + chr1_1:79328980-79328999 None:intergenic 30.0%
ATCTTTGTCAAGAAGAGAGA+AGG + chr1_1:79327344-79327363 None:intergenic 35.0%
CTTCTTGACAAAGATAGAGA+TGG - chr1_1:79327349-79327368 Msa0046900:three_prime_UTR 35.0%
GAAGTAGATACGGACAAAAA+CGG - chr1_1:79327562-79327581 Msa0046900:CDS 35.0%
AAAACGGAACCATAGAATTC+CGG - chr1_1:79327578-79327597 Msa0046900:CDS 35.0%
TCTCATGGCAAGAAAACTAA+AGG - chr1_1:79327612-79327631 Msa0046900:CDS 35.0%
! ACGAGAGAAGTTCTAATCTA+GGG - chr1_1:79327722-79327741 Msa0046900:intron 35.0%
TTTCTAAGTTCATGATGTGC+AGG + chr1_1:79327776-79327795 None:intergenic 35.0%
TGAAGCAGAAGAGGAATTTA+AGG - chr1_1:79328612-79328631 Msa0046900:intron 35.0%
AGGAATTTAAGGAAGCTTTC+AGG - chr1_1:79328623-79328642 Msa0046900:intron 35.0%
GGAATTTAAGGAAGCTTTCA+GGG - chr1_1:79328624-79328643 Msa0046900:intron 35.0%
GTGTTCGACAAAGATAAAGA+TGG - chr1_1:79328646-79328665 Msa0046900:intron 35.0%
ACTGGAGCAAATGATGAAAA+CGG - chr1_1:79328819-79328838 Msa0046900:CDS 35.0%
TTGATTATCAAGAGTTCGTC+AGG - chr1_1:79328866-79328885 Msa0046900:CDS 35.0%
GAGCCAGAAAATTTGAATAG+TGG - chr1_1:79329109-79329128 Msa0046900:CDS 35.0%
ATCTTTGTCAAGAAGAGAGA+AGG + chr1_1:79327344-79327363 None:intergenic 35.0%
CTTCTTGACAAAGATAGAGA+TGG - chr1_1:79327349-79327368 Msa0046900:three_prime_UTR 35.0%
GAAGTAGATACGGACAAAAA+CGG - chr1_1:79327562-79327581 Msa0046900:CDS 35.0%
AAAACGGAACCATAGAATTC+CGG - chr1_1:79327578-79327597 Msa0046900:CDS 35.0%
TCTCATGGCAAGAAAACTAA+AGG - chr1_1:79327612-79327631 Msa0046900:CDS 35.0%
! ACGAGAGAAGTTCTAATCTA+GGG - chr1_1:79327722-79327741 Msa0046900:intron 35.0%
TTTCTAAGTTCATGATGTGC+AGG + chr1_1:79327776-79327795 None:intergenic 35.0%
TGAAGCAGAAGAGGAATTTA+AGG - chr1_1:79328612-79328631 Msa0046900:intron 35.0%
AGGAATTTAAGGAAGCTTTC+AGG - chr1_1:79328623-79328642 Msa0046900:intron 35.0%
GGAATTTAAGGAAGCTTTCA+GGG - chr1_1:79328624-79328643 Msa0046900:intron 35.0%
GTGTTCGACAAAGATAAAGA+TGG - chr1_1:79328646-79328665 Msa0046900:intron 35.0%
ACTGGAGCAAATGATGAAAA+CGG - chr1_1:79328819-79328838 Msa0046900:CDS 35.0%
TTGATTATCAAGAGTTCGTC+AGG - chr1_1:79328866-79328885 Msa0046900:CDS 35.0%
TGCAGTGCCTAATTCTTCAA+TGG + chr1_1:79327488-79327507 None:intergenic 40.0%
AGATGAAAATCCTACGTTGG+AGG - chr1_1:79327519-79327538 Msa0046900:exon 40.0%
AAACGGAACCATAGAATTCC+GGG - chr1_1:79327579-79327598 Msa0046900:CDS 40.0%
CAAGAATTCCCGGAATTCTA+TGG + chr1_1:79327590-79327609 None:intergenic 40.0%
CCATGAGATTCAAGAATTCC+CGG + chr1_1:79327600-79327619 None:intergenic 40.0%
! CACGAGAGAAGTTCTAATCT+AGG - chr1_1:79327721-79327740 Msa0046900:intron 40.0%
! CGAGAGAAGTTCTAATCTAG+GGG - chr1_1:79327723-79327742 Msa0046900:intron 40.0%
AAGTCTGCACCTTTGATCTT+AGG - chr1_1:79328451-79328470 Msa0046900:intron 40.0%
AAAGGAAAGTGAAGCAGAAG+AGG - chr1_1:79328603-79328622 Msa0046900:intron 40.0%
TGGTTACATATCACCAAGTG+AGG - chr1_1:79328666-79328685 Msa0046900:intron 40.0%
ACTCAATACTGACCTCAACT+GGG + chr1_1:79328770-79328789 None:intergenic 40.0%
TACTCAATACTGACCTCAAC+TGG + chr1_1:79328771-79328790 None:intergenic 40.0%
! AGGTCAGTATTGAGTACCAT+CGG - chr1_1:79328775-79328794 Msa0046900:intron 40.0%
ATTGAGTACCATCGGAGAAA+AGG - chr1_1:79328783-79328802 Msa0046900:intron 40.0%
AATGATGAAAACGGCTGATC+TGG - chr1_1:79328828-79328847 Msa0046900:CDS 40.0%
!! AAAGAGTGTCATGTACTCAG+TGG - chr1_1:79329084-79329103 Msa0046900:CDS 40.0%
TGCAGTGCCTAATTCTTCAA+TGG + chr1_1:79327488-79327507 None:intergenic 40.0%
AGATGAAAATCCTACGTTGG+AGG - chr1_1:79327519-79327538 Msa0046900:exon 40.0%
AAACGGAACCATAGAATTCC+GGG - chr1_1:79327579-79327598 Msa0046900:CDS 40.0%
CAAGAATTCCCGGAATTCTA+TGG + chr1_1:79327590-79327609 None:intergenic 40.0%
CCATGAGATTCAAGAATTCC+CGG + chr1_1:79327600-79327619 None:intergenic 40.0%
! CACGAGAGAAGTTCTAATCT+AGG - chr1_1:79327721-79327740 Msa0046900:intron 40.0%
! CGAGAGAAGTTCTAATCTAG+GGG - chr1_1:79327723-79327742 Msa0046900:intron 40.0%
AAGTCTGCACCTTTGATCTT+AGG - chr1_1:79328451-79328470 Msa0046900:intron 40.0%
AAAGGAAAGTGAAGCAGAAG+AGG - chr1_1:79328603-79328622 Msa0046900:intron 40.0%
TGGTTACATATCACCAAGTG+AGG - chr1_1:79328666-79328685 Msa0046900:intron 40.0%
ACTCAATACTGACCTCAACT+GGG + chr1_1:79328770-79328789 None:intergenic 40.0%
TACTCAATACTGACCTCAAC+TGG + chr1_1:79328771-79328790 None:intergenic 40.0%
! AGGTCAGTATTGAGTACCAT+CGG - chr1_1:79328775-79328794 Msa0046900:intron 40.0%
ATTGAGTACCATCGGAGAAA+AGG - chr1_1:79328783-79328802 Msa0046900:intron 40.0%
AATGATGAAAACGGCTGATC+TGG - chr1_1:79328828-79328847 Msa0046900:CDS 40.0%
!! AAAGAGTGTCATGTACTCAG+TGG - chr1_1:79329084-79329103 Msa0046900:CDS 40.0%
AGAGCAGATTGGTGAGTTTC+TGG - chr1_1:79327315-79327334 Msa0046900:three_prime_UTR 45.0%
ATTTGCAACTCCTCCAACGT+AGG + chr1_1:79327532-79327551 None:intergenic 45.0%
CCGGGAATTCTTGAATCTCA+TGG - chr1_1:79327597-79327616 Msa0046900:CDS 45.0%
! GAGAAGTTCTAATCTAGGGG+CGG - chr1_1:79327726-79327745 Msa0046900:intron 45.0%
AAAGGTGACAGACGAAGAAC+TGG - chr1_1:79328801-79328820 Msa0046900:CDS 45.0%
ATGAAAACGGCTGATCTGGA+TGG - chr1_1:79328832-79328851 Msa0046900:CDS 45.0%
AGAGTTCGTCAGGATGATGT+TGG - chr1_1:79328876-79328895 Msa0046900:CDS 45.0%
AGAGCAGATTGGTGAGTTTC+TGG - chr1_1:79327315-79327334 Msa0046900:three_prime_UTR 45.0%
ATTTGCAACTCCTCCAACGT+AGG + chr1_1:79327532-79327551 None:intergenic 45.0%
CCGGGAATTCTTGAATCTCA+TGG - chr1_1:79327597-79327616 Msa0046900:CDS 45.0%
! GAGAAGTTCTAATCTAGGGG+CGG - chr1_1:79327726-79327745 Msa0046900:intron 45.0%
AAAGGTGACAGACGAAGAAC+TGG - chr1_1:79328801-79328820 Msa0046900:CDS 45.0%
ATGAAAACGGCTGATCTGGA+TGG - chr1_1:79328832-79328851 Msa0046900:CDS 45.0%
AGAGTTCGTCAGGATGATGT+TGG - chr1_1:79328876-79328895 Msa0046900:CDS 45.0%
!!! TTGATTATATTATATTTTAA+AGG - chr1_1:79327454-79327473 Msa0046900:three_prime_UTR 5.0%
!! GTATTATATAATTAAATTTA+CGG + chr1_1:79328424-79328443 None:intergenic 5.0%
!!! TTGATTATATTATATTTTAA+AGG - chr1_1:79327454-79327473 Msa0046900:three_prime_UTR 5.0%
!! GTATTATATAATTAAATTTA+CGG + chr1_1:79328424-79328443 None:intergenic 5.0%
TTCCTGAGGGAAGAGCAGAT+TGG - chr1_1:79327304-79327323 Msa0046900:three_prime_UTR 50.0%
TTCTAATCTAGGGGCGGATC+CGG - chr1_1:79327732-79327751 Msa0046900:intron 50.0%
! GTCTGTCACCTTTTCTCCGA+TGG + chr1_1:79328794-79328813 None:intergenic 50.0%
GAGTGTCATGTACTCAGTGG+CGG - chr1_1:79329087-79329106 Msa0046900:CDS 50.0%
TTCCTGAGGGAAGAGCAGAT+TGG - chr1_1:79327304-79327323 Msa0046900:three_prime_UTR 50.0%
TTCTAATCTAGGGGCGGATC+CGG - chr1_1:79327732-79327751 Msa0046900:intron 50.0%
! GTCTGTCACCTTTTCTCCGA+TGG + chr1_1:79328794-79328813 None:intergenic 50.0%
GAGTGTCATGTACTCAGTGG+CGG - chr1_1:79329087-79329106 Msa0046900:CDS 50.0%
CACCAATCTGCTCTTCCCTC+AGG + chr1_1:79327309-79327328 None:intergenic 55.0%
ACGGCTGATCTGGATGGTGA+CGG - chr1_1:79328838-79328857 Msa0046900:CDS 55.0%
CACCAATCTGCTCTTCCCTC+AGG + chr1_1:79327309-79327328 None:intergenic 55.0%
ACGGCTGATCTGGATGGTGA+CGG - chr1_1:79328838-79328857 Msa0046900:CDS 55.0%
GCGGATCCGGTGCTTCACAA+GGG - chr1_1:79327745-79327764 Msa0046900:CDS 60.0%
CGGATCCGGTGCTTCACAAG+GGG - chr1_1:79327746-79327765 Msa0046900:CDS 60.0%
GTGCACCCCTTGTGAAGCAC+CGG + chr1_1:79327754-79327773 None:intergenic 60.0%
TGCACGTGTGAGCCCAGTTG+AGG - chr1_1:79328755-79328774 Msa0046900:intron 60.0%
GCGGATCCGGTGCTTCACAA+GGG - chr1_1:79327745-79327764 Msa0046900:CDS 60.0%
CGGATCCGGTGCTTCACAAG+GGG - chr1_1:79327746-79327765 Msa0046900:CDS 60.0%
GTGCACCCCTTGTGAAGCAC+CGG + chr1_1:79327754-79327773 None:intergenic 60.0%
TGCACGTGTGAGCCCAGTTG+AGG - chr1_1:79328755-79328774 Msa0046900:intron 60.0%
GGCGGATCCGGTGCTTCACA+AGG - chr1_1:79327744-79327763 Msa0046900:CDS 65.0%
GGCGGATCCGGTGCTTCACA+AGG - chr1_1:79327744-79327763 Msa0046900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79327295 79329131 79327295 ID=Msa0046900;Name=Msa0046900
chr1_1 mRNA 79327295 79329131 79327295 ID=Msa0046900-mRNA-1;Parent=Msa0046900;Name=Msa0046900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.33|0.25|1|1|1|4|225|149
chr1_1 exon 79327295 79327654 79327295 ID=Msa0046900-mRNA-1:exon:27383;Parent=Msa0046900-mRNA-1
chr1_1 exon 79327739 79327819 79327739 ID=Msa0046900-mRNA-1:exon:27382;Parent=Msa0046900-mRNA-1
chr1_1 exon 79328793 79328950 79328793 ID=Msa0046900-mRNA-1:exon:27381;Parent=Msa0046900-mRNA-1
chr1_1 exon 79329056 79329131 79329056 ID=Msa0046900-mRNA-1:exon:27380;Parent=Msa0046900-mRNA-1
chr1_1 CDS 79329056 79329131 79329056 ID=Msa0046900-mRNA-1:cds;Parent=Msa0046900-mRNA-1
chr1_1 CDS 79328793 79328950 79328793 ID=Msa0046900-mRNA-1:cds;Parent=Msa0046900-mRNA-1
chr1_1 CDS 79327739 79327819 79327739 ID=Msa0046900-mRNA-1:cds;Parent=Msa0046900-mRNA-1
chr1_1 CDS 79327520 79327654 79327520 ID=Msa0046900-mRNA-1:cds;Parent=Msa0046900-mRNA-1
chr1_1 three_prime_UTR 79327295 79327519 79327295 ID=Msa0046900-mRNA-1:three_prime_utr;Parent=Msa0046900-mRNA-1
Gene Sequence

>Msa0046900

ATGAGCGACTTCCTGAGGGAAGAGCAGATTGGTGAGTTTCTGGAAGCCTTCTCTCTTCTTGACAAAGATAGAGATGGTTGCATAACCATTGAAGAATTAGGCACTGCAATCAGATCATTAGATGAAAATCCTACGTTGGAGGAGTTGCAAATTATGATGAATGAAGTAGATACGGACAAAAACGGAACCATAGAATTCCGGGAATTCTTGAATCTCATGGCAAGAAAACTAAAGGAAAGTGAAGCAGAAGAGGAATTTAAGGAAGCTTTCAGGGTGTTCGACAAAGATAAAGATGGTTACATATCACCAAGTGAGTTGAGGTCAGTATTGAGTACCATCGGAGAAAAGGTGACAGACGAAGAACTGGAGCAAATGATGAAAACGGCTGATCTGGATGGTGACGGTCTCGTTGATTATCAAGAGTTCGTCAGGATGATGTTGGCTGTTTAA
Protein sequence

>Msa0046900

MSDFLREEQIGEFLEAFSLLDKDRDGCITIEELGTAIRSLDENPTLEELQIMMNEVDTDKNGTIEFREFLNLMARKLKESEAEEEFKEAFRVFDKDKDGYISPSELRSVLSTIGEKVTDEELEQMMKTADLDGDGLVDYQEFVRMMLAV*