AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047150 MtrunA17_Chr5g0438181 100.000 69 0 0 1 69 1 69 1.09e-44 139
Msa0047150 MtrunA17_Chr4g0071611 100.000 69 0 0 1 69 1 69 1.72e-44 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047150 AT4G24920.1 92.647 68 5 0 1 68 1 68 4.96e-41 128
Msa0047150 AT5G50460.1 92.647 68 5 0 1 68 1 68 4.96e-41 128
Msa0047150 AT3G48570.1 86.957 69 9 0 1 69 1 69 2.17e-39 124

Find 43 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATATGGAACTATAATT+TGG 0.198586 1_1:-79856172 Msa0047150:three_prime_UTR
CCAACGATGATGTTGTTAAT+TGG 0.213895 1_1:+79857818 None:intergenic
ATTCTTAGATCGAAAGAAAA+TGG 0.228279 1_1:-79858112 Msa0047150:intron
TGATTGGTATCTATGTAAAT+TGG 0.291365 1_1:-79856113 Msa0047150:three_prime_UTR
TGGTTATTTCCACAGGATAA+TGG 0.303863 1_1:-79856408 Msa0047150:intron
CCTAACGATCGAAGTCTTAG+TGG 0.358218 1_1:+79858294 None:intergenic
CGCTTTGCTCCTTGAACAAT+GGG 0.363239 1_1:+79856196 None:intergenic
TCGTATTGTAGAATTCTCTA+AGG 0.363993 1_1:-79857912 Msa0047150:intron
AGACCTTTGTTCTGTGTGTT+GGG 0.368248 1_1:+79858324 None:intergenic
AGGAGCAAAGCGTTTAGATA+TGG 0.380566 1_1:-79856185 Msa0047150:three_prime_UTR
TGCCATCGGTTTCGTTGTGA+TGG 0.408671 1_1:-79857876 Msa0047150:CDS
TACCTTTGCGATCGGGTTTG+TGG 0.417825 1_1:+79858019 None:intergenic
CCACTAAGACTTCGATCGTT+AGG 0.420908 1_1:-79858294 Msa0047150:intron
AACAACATCATCGTTGGATC+TGG 0.426526 1_1:-79857812 Msa0047150:CDS
CATCATCGTTGGATCTGGTT+AGG 0.451612 1_1:-79857807 Msa0047150:intron
AGTATGAAGGTGACGAAGGA+TGG 0.463697 1_1:-79856043 Msa0047150:three_prime_UTR
GAGACCTTTGTTCTGTGTGT+TGG 0.472045 1_1:+79858323 None:intergenic
ACGCTTTGCTCCTTGAACAA+TGG 0.473873 1_1:+79856195 None:intergenic
TTCGTTGTGATGGGATTCGT+TGG 0.482699 1_1:-79857866 Msa0047150:CDS
GCCATCGGTTTCGTTGTGAT+GGG 0.492846 1_1:-79857875 Msa0047150:CDS
CCAATTAACAACATCATCGT+TGG 0.497266 1_1:-79857818 Msa0047150:CDS
GTTGCTGTGCGCACTGCCAT+CGG 0.516428 1_1:-79857890 Msa0047150:CDS
GACCTTTGTTCTGTGTGTTG+GGG 0.517962 1_1:+79858325 None:intergenic
TGGATCGAAAACAGAATCAA+TGG 0.519751 1_1:+79858086 None:intergenic
ATGGAAACTACAATCGCCTC+AGG 0.536961 1_1:-79856389 Msa0047150:three_prime_UTR
TCTGCAACAAAACGAAAGGT+TGG 0.543759 1_1:+79858357 None:intergenic
TGAAGCGTATGGAGGCAGTA+GGG 0.546648 1_1:-79856355 Msa0047150:three_prime_UTR
GTGAAGCGTATGGAGGCAGT+AGG 0.563634 1_1:-79856356 Msa0047150:three_prime_UTR
TTTGTCTGCAACAAAACGAA+AGG 0.571069 1_1:+79858353 None:intergenic
ACTAACTACATAAAGTATGA+AGG 0.574058 1_1:-79856056 Msa0047150:intron
CACTGAATGTTCTATTAAAG+CGG 0.574715 1_1:+79856328 None:intergenic
AATTCAAGTTGTGAAGCGTA+TGG 0.586553 1_1:-79856366 Msa0047150:three_prime_UTR
ACTGAATGTTCTATTAAAGC+GGG 0.590322 1_1:+79856329 None:intergenic
AATTCGCTAAGGACAGCGTA+AGG 0.605053 1_1:-79858056 Msa0047150:CDS
CTTCACAACTTGAATTCCTG+AGG 0.631270 1_1:+79856373 None:intergenic
GAAGCGTATGGAGGCAGTAG+GGG 0.637258 1_1:-79856354 Msa0047150:three_prime_UTR
TGCCACAAACCCGATCGCAA+AGG 0.641795 1_1:-79858021 Msa0047150:intron
TCCCATCACAACGAAACCGA+TGG 0.648968 1_1:+79857874 None:intergenic
TCCACTCAGAGAATTCGCTA+AGG 0.652105 1_1:-79858067 Msa0047150:CDS
ATCCCCAACACACAGAACAA+AGG 0.654430 1_1:-79858327 Msa0047150:five_prime_UTR
ATAAAGTATGAAGGTGACGA+AGG 0.659214 1_1:-79856047 Msa0047150:three_prime_UTR
TCAAGTTGTGAAGCGTATGG+AGG 0.660190 1_1:-79856363 Msa0047150:three_prime_UTR
TCCTTAGCGAATTCTCTGAG+TGG 0.675399 1_1:+79858066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGAAAAAAAAGAAATA+TGG + chr1_1:79858208-79858227 None:intergenic 10.0%
!!! TGTAAAATTTTATTTTTACA+TGG - chr1_1:79858243-79858262 Msa0047150:intron 10.0%
!!! GTAAAATTTTATTTTTACAT+GGG - chr1_1:79858244-79858263 Msa0047150:intron 10.0%
!!! ACATTTTTTTTTTTTTTTGA+GGG + chr1_1:79858392-79858411 None:intergenic 10.0%
!!! TACATTTTTTTTTTTTTTTG+AGG + chr1_1:79858393-79858412 None:intergenic 10.0%
!!! TTTTAGAAAAAAAAGAAATA+TGG + chr1_1:79858208-79858227 None:intergenic 10.0%
!!! TGTAAAATTTTATTTTTACA+TGG - chr1_1:79858243-79858262 Msa0047150:intron 10.0%
!!! GTAAAATTTTATTTTTACAT+GGG - chr1_1:79858244-79858263 Msa0047150:intron 10.0%
!!! ACATTTTTTTTTTTTTTTGA+GGG + chr1_1:79858392-79858411 None:intergenic 10.0%
!!! TACATTTTTTTTTTTTTTTG+AGG + chr1_1:79858393-79858412 None:intergenic 10.0%
!! ACTATATAAAAAACTTTCAA+AGG + chr1_1:79857827-79857846 None:intergenic 15.0%
!! ACTATATAAAAAACTTTCAA+AGG + chr1_1:79857827-79857846 None:intergenic 15.0%
!! ATTCAAAGTAAACAAAGAAA+GGG + chr1_1:79856218-79856237 None:intergenic 20.0%
!! TATTCAAAGTAAACAAAGAA+AGG + chr1_1:79856219-79856238 None:intergenic 20.0%
!! ATCTAAGAATTGAAACAAAT+TGG + chr1_1:79856353-79856372 None:intergenic 20.0%
!! AAATATGTCCTTCAAATTAA+AGG + chr1_1:79856749-79856768 None:intergenic 20.0%
!! AATAATTGTTTATCCAAACA+GGG + chr1_1:79856830-79856849 None:intergenic 20.0%
!! AAATAATTGTTTATCCAAAC+AGG + chr1_1:79856831-79856850 None:intergenic 20.0%
!! GACTATTTGATAAAACTATA+TGG + chr1_1:79857031-79857050 None:intergenic 20.0%
!!! AGCTGTTTTAATATAAATCA+AGG - chr1_1:79857083-79857102 Msa0047150:intron 20.0%
!!! GCTGTTTTAATATAAATCAA+GGG - chr1_1:79857084-79857103 Msa0047150:intron 20.0%
!!! AAGTATGTTTGTTGTATTTA+TGG - chr1_1:79857114-79857133 Msa0047150:intron 20.0%
!! ATGATTAATTGATTACATCT+TGG - chr1_1:79857357-79857376 Msa0047150:intron 20.0%
!! GAAAATAATTATACAATCTC+TGG + chr1_1:79857673-79857692 None:intergenic 20.0%
!!! ATAATTATTTTCTTAGTGAC+CGG - chr1_1:79857681-79857700 Msa0047150:intron 20.0%
!! TTAGATATGGAACTATAATT+TGG - chr1_1:79858303-79858322 Msa0047150:five_prime_UTR 20.0%
!! ATTCAAAGTAAACAAAGAAA+GGG + chr1_1:79856218-79856237 None:intergenic 20.0%
!! TATTCAAAGTAAACAAAGAA+AGG + chr1_1:79856219-79856238 None:intergenic 20.0%
!! ATCTAAGAATTGAAACAAAT+TGG + chr1_1:79856353-79856372 None:intergenic 20.0%
!! AAATATGTCCTTCAAATTAA+AGG + chr1_1:79856749-79856768 None:intergenic 20.0%
!! AATAATTGTTTATCCAAACA+GGG + chr1_1:79856830-79856849 None:intergenic 20.0%
!! AAATAATTGTTTATCCAAAC+AGG + chr1_1:79856831-79856850 None:intergenic 20.0%
!! GACTATTTGATAAAACTATA+TGG + chr1_1:79857031-79857050 None:intergenic 20.0%
!!! AGCTGTTTTAATATAAATCA+AGG - chr1_1:79857083-79857102 Msa0047150:intron 20.0%
!!! GCTGTTTTAATATAAATCAA+GGG - chr1_1:79857084-79857103 Msa0047150:intron 20.0%
!!! AAGTATGTTTGTTGTATTTA+TGG - chr1_1:79857114-79857133 Msa0047150:intron 20.0%
!! ATGATTAATTGATTACATCT+TGG - chr1_1:79857357-79857376 Msa0047150:intron 20.0%
!! GAAAATAATTATACAATCTC+TGG + chr1_1:79857673-79857692 None:intergenic 20.0%
!!! ATAATTATTTTCTTAGTGAC+CGG - chr1_1:79857681-79857700 Msa0047150:intron 20.0%
!! TTAGATATGGAACTATAATT+TGG - chr1_1:79858303-79858322 Msa0047150:five_prime_UTR 20.0%
! ATTCTTAGATCGAAAGAAAA+TGG - chr1_1:79856363-79856382 Msa0047150:three_prime_UTR 25.0%
!!! TTATCCTTCCTTTAATTTGA+AGG - chr1_1:79856738-79856757 Msa0047150:intron 25.0%
! AATTTGAAGGACATATTTGA+TGG - chr1_1:79856751-79856770 Msa0047150:intron 25.0%
! AACAGAAGTAAACTTAAAAC+AGG + chr1_1:79857508-79857527 None:intergenic 25.0%
! ACATATGATACGATTTCTAT+TGG + chr1_1:79857985-79858004 None:intergenic 25.0%
! AATCGTATCATATGTTACTA+AGG - chr1_1:79857990-79858009 Msa0047150:intron 25.0%
! TGATTGGTATCTATGTAAAT+TGG - chr1_1:79858362-79858381 Msa0047150:five_prime_UTR 25.0%
! ACTAACTACATAAAGTATGA+AGG - chr1_1:79858419-79858438 Msa0047150:five_prime_UTR 25.0%
! ATTCTTAGATCGAAAGAAAA+TGG - chr1_1:79856363-79856382 Msa0047150:three_prime_UTR 25.0%
!!! TTATCCTTCCTTTAATTTGA+AGG - chr1_1:79856738-79856757 Msa0047150:intron 25.0%
! AATTTGAAGGACATATTTGA+TGG - chr1_1:79856751-79856770 Msa0047150:intron 25.0%
! AACAGAAGTAAACTTAAAAC+AGG + chr1_1:79857508-79857527 None:intergenic 25.0%
! ACATATGATACGATTTCTAT+TGG + chr1_1:79857985-79858004 None:intergenic 25.0%
! AATCGTATCATATGTTACTA+AGG - chr1_1:79857990-79858009 Msa0047150:intron 25.0%
! TGATTGGTATCTATGTAAAT+TGG - chr1_1:79858362-79858381 Msa0047150:five_prime_UTR 25.0%
! ACTAACTACATAAAGTATGA+AGG - chr1_1:79858419-79858438 Msa0047150:five_prime_UTR 25.0%
! GAAAGACAATGACTTTTGAT+TGG - chr1_1:79856052-79856071 Msa0047150:intron 30.0%
ATCTAGTAGATCGAAATCAA+AGG + chr1_1:79856260-79856279 None:intergenic 30.0%
!!! AGTTTTTTTACCTTTGCGAT+CGG + chr1_1:79856467-79856486 None:intergenic 30.0%
AAGATCAAAGAGGAATGAAA+GGG + chr1_1:79856496-79856515 None:intergenic 30.0%
TCATAAAACCAAGATCAAAG+AGG + chr1_1:79856506-79856525 None:intergenic 30.0%
! TTTTATGAATCTCTGTGCTA+TGG - chr1_1:79856518-79856537 Msa0047150:intron 30.0%
TCGTATTGTAGAATTCTCTA+AGG - chr1_1:79856563-79856582 Msa0047150:intron 30.0%
AAAATTAGAGTTCAGTGTGA+GGG + chr1_1:79856706-79856725 None:intergenic 30.0%
AAAAATTAGAGTTCAGTGTG+AGG + chr1_1:79856707-79856726 None:intergenic 30.0%
ATGTCCTTCAAATTAAAGGA+AGG + chr1_1:79856745-79856764 None:intergenic 30.0%
GACATATTTGATGGAATGAT+TGG - chr1_1:79856760-79856779 Msa0047150:intron 30.0%
! TTGAAACGATTTGAGATCTT+AGG - chr1_1:79856804-79856823 Msa0047150:intron 30.0%
TAGCTTATGAAAACAGCTTA+TGG + chr1_1:79856949-79856968 None:intergenic 30.0%
ACAAGTAAATCCATTATGCA+GGG + chr1_1:79857144-79857163 None:intergenic 30.0%
!! TTGCTTTTGCTTGTTCTAAA+TGG - chr1_1:79857289-79857308 Msa0047150:intron 30.0%
TGTTGAATGATAACACCTTA+TGG - chr1_1:79857391-79857410 Msa0047150:intron 30.0%
! AGCAACTTTTTGTAACCATA+AGG + chr1_1:79857409-79857428 None:intergenic 30.0%
TGAACATATTTGCGACAATA+TGG - chr1_1:79857546-79857565 Msa0047150:intron 30.0%
CATTACATTACAGAAATAGC+TGG + chr1_1:79857738-79857757 None:intergenic 30.0%
TGTAATGTAATGAGAGAGTT+TGG - chr1_1:79857746-79857765 Msa0047150:intron 30.0%
! ACTAATGTCAAGGATGTTTT+TGG - chr1_1:79857790-79857809 Msa0047150:intron 30.0%
ACTGAATGTTCTATTAAAGC+GGG + chr1_1:79858149-79858168 None:intergenic 30.0%
CACTGAATGTTCTATTAAAG+CGG + chr1_1:79858150-79858169 None:intergenic 30.0%
! AAACTCACAAAAAGCATGAT+TGG - chr1_1:79858346-79858365 Msa0047150:five_prime_UTR 30.0%
! GAAAGACAATGACTTTTGAT+TGG - chr1_1:79856052-79856071 Msa0047150:intron 30.0%
ATCTAGTAGATCGAAATCAA+AGG + chr1_1:79856260-79856279 None:intergenic 30.0%
!!! AGTTTTTTTACCTTTGCGAT+CGG + chr1_1:79856467-79856486 None:intergenic 30.0%
AAGATCAAAGAGGAATGAAA+GGG + chr1_1:79856496-79856515 None:intergenic 30.0%
TCATAAAACCAAGATCAAAG+AGG + chr1_1:79856506-79856525 None:intergenic 30.0%
! TTTTATGAATCTCTGTGCTA+TGG - chr1_1:79856518-79856537 Msa0047150:intron 30.0%
TCGTATTGTAGAATTCTCTA+AGG - chr1_1:79856563-79856582 Msa0047150:intron 30.0%
AAAATTAGAGTTCAGTGTGA+GGG + chr1_1:79856706-79856725 None:intergenic 30.0%
AAAAATTAGAGTTCAGTGTG+AGG + chr1_1:79856707-79856726 None:intergenic 30.0%
ATGTCCTTCAAATTAAAGGA+AGG + chr1_1:79856745-79856764 None:intergenic 30.0%
GACATATTTGATGGAATGAT+TGG - chr1_1:79856760-79856779 Msa0047150:intron 30.0%
! TTGAAACGATTTGAGATCTT+AGG - chr1_1:79856804-79856823 Msa0047150:intron 30.0%
TAGCTTATGAAAACAGCTTA+TGG + chr1_1:79856949-79856968 None:intergenic 30.0%
ACAAGTAAATCCATTATGCA+GGG + chr1_1:79857144-79857163 None:intergenic 30.0%
!! TTGCTTTTGCTTGTTCTAAA+TGG - chr1_1:79857289-79857308 Msa0047150:intron 30.0%
TGTTGAATGATAACACCTTA+TGG - chr1_1:79857391-79857410 Msa0047150:intron 30.0%
! AGCAACTTTTTGTAACCATA+AGG + chr1_1:79857409-79857428 None:intergenic 30.0%
TGAACATATTTGCGACAATA+TGG - chr1_1:79857546-79857565 Msa0047150:intron 30.0%
CATTACATTACAGAAATAGC+TGG + chr1_1:79857738-79857757 None:intergenic 30.0%
TGTAATGTAATGAGAGAGTT+TGG - chr1_1:79857746-79857765 Msa0047150:intron 30.0%
! ACTAATGTCAAGGATGTTTT+TGG - chr1_1:79857790-79857809 Msa0047150:intron 30.0%
ACTGAATGTTCTATTAAAGC+GGG + chr1_1:79858149-79858168 None:intergenic 30.0%
CACTGAATGTTCTATTAAAG+CGG + chr1_1:79858150-79858169 None:intergenic 30.0%
! AAACTCACAAAAAGCATGAT+TGG - chr1_1:79858346-79858365 Msa0047150:five_prime_UTR 30.0%
TTTGTCTGCAACAAAACGAA+AGG + chr1_1:79856125-79856144 None:intergenic 35.0%
TGGATCGAAAACAGAATCAA+TGG + chr1_1:79856392-79856411 None:intergenic 35.0%
!!! GTTTTTTTACCTTTGCGATC+GGG + chr1_1:79856466-79856485 None:intergenic 35.0%
CAAGATCAAAGAGGAATGAA+AGG + chr1_1:79856497-79856516 None:intergenic 35.0%
CTTTCATTCCTCTTTGATCT+TGG - chr1_1:79856495-79856514 Msa0047150:intron 35.0%
CCAACGATGATGTTGTTAAT+TGG + chr1_1:79856660-79856679 None:intergenic 35.0%
CCAATTAACAACATCATCGT+TGG - chr1_1:79856657-79856676 Msa0047150:intron 35.0%
! TTATGGTTTTCCCTGCATAA+TGG - chr1_1:79857131-79857150 Msa0047150:intron 35.0%
CACAAGTAAATCCATTATGC+AGG + chr1_1:79857145-79857164 None:intergenic 35.0%
AGCTTTCTCTTTGTCATGAT+TGG - chr1_1:79857229-79857248 Msa0047150:intron 35.0%
GTTAGTGACTTTCTCTTTGT+TGG - chr1_1:79857251-79857270 Msa0047150:intron 35.0%
!!! GACTTTCTCTTTGTTGGTTT+TGG - chr1_1:79857257-79857276 Msa0047150:intron 35.0%
ATGACGATGTAATTAACGCT+TGG - chr1_1:79858047-79858066 Msa0047150:CDS 35.0%
! TGGTTATTTCCACAGGATAA+TGG - chr1_1:79858067-79858086 Msa0047150:CDS 35.0%
TTGTAGTTTCCATTATCCTG+TGG + chr1_1:79858079-79858098 None:intergenic 35.0%
!! AATTCAAGTTGTGAAGCGTA+TGG - chr1_1:79858109-79858128 Msa0047150:intron 35.0%
ATAAAGTATGAAGGTGACGA+AGG - chr1_1:79858428-79858447 Msa0047150:five_prime_UTR 35.0%
TTTGTCTGCAACAAAACGAA+AGG + chr1_1:79856125-79856144 None:intergenic 35.0%
TGGATCGAAAACAGAATCAA+TGG + chr1_1:79856392-79856411 None:intergenic 35.0%
!!! GTTTTTTTACCTTTGCGATC+GGG + chr1_1:79856466-79856485 None:intergenic 35.0%
CAAGATCAAAGAGGAATGAA+AGG + chr1_1:79856497-79856516 None:intergenic 35.0%
CTTTCATTCCTCTTTGATCT+TGG - chr1_1:79856495-79856514 Msa0047150:intron 35.0%
CCAACGATGATGTTGTTAAT+TGG + chr1_1:79856660-79856679 None:intergenic 35.0%
CCAATTAACAACATCATCGT+TGG - chr1_1:79856657-79856676 Msa0047150:intron 35.0%
! TTATGGTTTTCCCTGCATAA+TGG - chr1_1:79857131-79857150 Msa0047150:intron 35.0%
CACAAGTAAATCCATTATGC+AGG + chr1_1:79857145-79857164 None:intergenic 35.0%
AGCTTTCTCTTTGTCATGAT+TGG - chr1_1:79857229-79857248 Msa0047150:intron 35.0%
GTTAGTGACTTTCTCTTTGT+TGG - chr1_1:79857251-79857270 Msa0047150:intron 35.0%
!!! GACTTTCTCTTTGTTGGTTT+TGG - chr1_1:79857257-79857276 Msa0047150:intron 35.0%
ATGACGATGTAATTAACGCT+TGG - chr1_1:79858047-79858066 Msa0047150:CDS 35.0%
! TGGTTATTTCCACAGGATAA+TGG - chr1_1:79858067-79858086 Msa0047150:CDS 35.0%
TTGTAGTTTCCATTATCCTG+TGG + chr1_1:79858079-79858098 None:intergenic 35.0%
!! AATTCAAGTTGTGAAGCGTA+TGG - chr1_1:79858109-79858128 Msa0047150:intron 35.0%
ATAAAGTATGAAGGTGACGA+AGG - chr1_1:79858428-79858447 Msa0047150:five_prime_UTR 35.0%
TCTGCAACAAAACGAAAGGT+TGG + chr1_1:79856121-79856140 None:intergenic 40.0%
AGACCTTTGTTCTGTGTGTT+GGG + chr1_1:79856154-79856173 None:intergenic 40.0%
AACAACATCATCGTTGGATC+TGG - chr1_1:79856663-79856682 Msa0047150:intron 40.0%
GTCATTACACAAGCTCCTTA+GGG + chr1_1:79857716-79857735 None:intergenic 40.0%
GAGAGTTTGGTATTAGTCGT+AGG - chr1_1:79857759-79857778 Msa0047150:intron 40.0%
! TAACGCTTGGTTATTTCCAC+AGG - chr1_1:79858060-79858079 Msa0047150:CDS 40.0%
CTTCACAACTTGAATTCCTG+AGG + chr1_1:79858105-79858124 None:intergenic 40.0%
! GACTTTTGACCCATTGTTCA+AGG - chr1_1:79858270-79858289 Msa0047150:intron 40.0%
! AGGAGCAAAGCGTTTAGATA+TGG - chr1_1:79858290-79858309 Msa0047150:intron 40.0%
TCTGCAACAAAACGAAAGGT+TGG + chr1_1:79856121-79856140 None:intergenic 40.0%
AGACCTTTGTTCTGTGTGTT+GGG + chr1_1:79856154-79856173 None:intergenic 40.0%
AACAACATCATCGTTGGATC+TGG - chr1_1:79856663-79856682 Msa0047150:intron 40.0%
GTCATTACACAAGCTCCTTA+GGG + chr1_1:79857716-79857735 None:intergenic 40.0%
GAGAGTTTGGTATTAGTCGT+AGG - chr1_1:79857759-79857778 Msa0047150:intron 40.0%
! TAACGCTTGGTTATTTCCAC+AGG - chr1_1:79858060-79858079 Msa0047150:CDS 40.0%
CTTCACAACTTGAATTCCTG+AGG + chr1_1:79858105-79858124 None:intergenic 40.0%
! GACTTTTGACCCATTGTTCA+AGG - chr1_1:79858270-79858289 Msa0047150:intron 40.0%
! AGGAGCAAAGCGTTTAGATA+TGG - chr1_1:79858290-79858309 Msa0047150:intron 40.0%
ATCCCCAACACACAGAACAA+AGG - chr1_1:79856148-79856167 Msa0047150:three_prime_UTR 45.0%
GACCTTTGTTCTGTGTGTTG+GGG + chr1_1:79856153-79856172 None:intergenic 45.0%
GAGACCTTTGTTCTGTGTGT+TGG + chr1_1:79856155-79856174 None:intergenic 45.0%
CCTAACGATCGAAGTCTTAG+TGG + chr1_1:79856184-79856203 None:intergenic 45.0%
CCACTAAGACTTCGATCGTT+AGG - chr1_1:79856181-79856200 Msa0047150:three_prime_UTR 45.0%
TCCACTCAGAGAATTCGCTA+AGG - chr1_1:79856408-79856427 Msa0047150:intron 45.0%
TCCTTAGCGAATTCTCTGAG+TGG + chr1_1:79856412-79856431 None:intergenic 45.0%
AATTCGCTAAGGACAGCGTA+AGG - chr1_1:79856419-79856438 Msa0047150:intron 45.0%
! TTCGTTGTGATGGGATTCGT+TGG - chr1_1:79856609-79856628 Msa0047150:intron 45.0%
CATCATCGTTGGATCTGGTT+AGG - chr1_1:79856668-79856687 Msa0047150:intron 45.0%
TTGAGATCTTAGGCCCTGTT+TGG - chr1_1:79856814-79856833 Msa0047150:intron 45.0%
CGACTTGCATAAGCACTTGT+GGG + chr1_1:79857053-79857072 None:intergenic 45.0%
! TCGACTTGCATAAGCACTTG+TGG + chr1_1:79857054-79857073 None:intergenic 45.0%
GGTCATTACACAAGCTCCTT+AGG + chr1_1:79857717-79857736 None:intergenic 45.0%
TACACACTTTGCTCGAGACA+CGG + chr1_1:79858026-79858045 None:intergenic 45.0%
ATGGAAACTACAATCGCCTC+AGG - chr1_1:79858086-79858105 Msa0047150:CDS 45.0%
! TCAAGTTGTGAAGCGTATGG+AGG - chr1_1:79858112-79858131 Msa0047150:intron 45.0%
CGCTTTGCTCCTTGAACAAT+GGG + chr1_1:79858282-79858301 None:intergenic 45.0%
ACGCTTTGCTCCTTGAACAA+TGG + chr1_1:79858283-79858302 None:intergenic 45.0%
AGTATGAAGGTGACGAAGGA+TGG - chr1_1:79858432-79858451 Msa0047150:five_prime_UTR 45.0%
ATCCCCAACACACAGAACAA+AGG - chr1_1:79856148-79856167 Msa0047150:three_prime_UTR 45.0%
GACCTTTGTTCTGTGTGTTG+GGG + chr1_1:79856153-79856172 None:intergenic 45.0%
GAGACCTTTGTTCTGTGTGT+TGG + chr1_1:79856155-79856174 None:intergenic 45.0%
CCTAACGATCGAAGTCTTAG+TGG + chr1_1:79856184-79856203 None:intergenic 45.0%
CCACTAAGACTTCGATCGTT+AGG - chr1_1:79856181-79856200 Msa0047150:three_prime_UTR 45.0%
TCCACTCAGAGAATTCGCTA+AGG - chr1_1:79856408-79856427 Msa0047150:intron 45.0%
TCCTTAGCGAATTCTCTGAG+TGG + chr1_1:79856412-79856431 None:intergenic 45.0%
AATTCGCTAAGGACAGCGTA+AGG - chr1_1:79856419-79856438 Msa0047150:intron 45.0%
! TTCGTTGTGATGGGATTCGT+TGG - chr1_1:79856609-79856628 Msa0047150:intron 45.0%
CATCATCGTTGGATCTGGTT+AGG - chr1_1:79856668-79856687 Msa0047150:intron 45.0%
TTGAGATCTTAGGCCCTGTT+TGG - chr1_1:79856814-79856833 Msa0047150:intron 45.0%
CGACTTGCATAAGCACTTGT+GGG + chr1_1:79857053-79857072 None:intergenic 45.0%
! TCGACTTGCATAAGCACTTG+TGG + chr1_1:79857054-79857073 None:intergenic 45.0%
GGTCATTACACAAGCTCCTT+AGG + chr1_1:79857717-79857736 None:intergenic 45.0%
TACACACTTTGCTCGAGACA+CGG + chr1_1:79858026-79858045 None:intergenic 45.0%
ATGGAAACTACAATCGCCTC+AGG - chr1_1:79858086-79858105 Msa0047150:CDS 45.0%
! TCAAGTTGTGAAGCGTATGG+AGG - chr1_1:79858112-79858131 Msa0047150:intron 45.0%
CGCTTTGCTCCTTGAACAAT+GGG + chr1_1:79858282-79858301 None:intergenic 45.0%
ACGCTTTGCTCCTTGAACAA+TGG + chr1_1:79858283-79858302 None:intergenic 45.0%
!! AAAAAAAAAAAAATGTAAAT+TGG - chr1_1:79858396-79858415 Msa0047150:five_prime_UTR 5.0%
!! AAAAAAAAAAAAATGTAAAT+TGG - chr1_1:79858396-79858415 Msa0047150:five_prime_UTR 5.0%
TACCTTTGCGATCGGGTTTG+TGG + chr1_1:79856459-79856478 None:intergenic 50.0%
!! TGCCATCGGTTTCGTTGTGA+TGG - chr1_1:79856599-79856618 Msa0047150:intron 50.0%
!! GCCATCGGTTTCGTTGTGAT+GGG - chr1_1:79856600-79856619 Msa0047150:intron 50.0%
TCCCATCACAACGAAACCGA+TGG + chr1_1:79856604-79856623 None:intergenic 50.0%
ACACAAGCTCCTTAGGGCAT+AGG + chr1_1:79857710-79857729 None:intergenic 50.0%
GGCTGCAGCAACTAATGTCA+AGG - chr1_1:79857780-79857799 Msa0047150:intron 50.0%
TGAAGCGTATGGAGGCAGTA+GGG - chr1_1:79858120-79858139 Msa0047150:intron 50.0%
TACCTTTGCGATCGGGTTTG+TGG + chr1_1:79856459-79856478 None:intergenic 50.0%
!! TGCCATCGGTTTCGTTGTGA+TGG - chr1_1:79856599-79856618 Msa0047150:intron 50.0%
!! GCCATCGGTTTCGTTGTGAT+GGG - chr1_1:79856600-79856619 Msa0047150:intron 50.0%
TCCCATCACAACGAAACCGA+TGG + chr1_1:79856604-79856623 None:intergenic 50.0%
ACACAAGCTCCTTAGGGCAT+AGG + chr1_1:79857710-79857729 None:intergenic 50.0%
GGCTGCAGCAACTAATGTCA+AGG - chr1_1:79857780-79857799 Msa0047150:intron 50.0%
TGAAGCGTATGGAGGCAGTA+GGG - chr1_1:79858120-79858139 Msa0047150:intron 50.0%
TGCCACAAACCCGATCGCAA+AGG - chr1_1:79856454-79856473 Msa0047150:intron 55.0%
CTCCTTAGGGCATAGGTAGC+CGG + chr1_1:79857703-79857722 None:intergenic 55.0%
GTGAAGCGTATGGAGGCAGT+AGG - chr1_1:79858119-79858138 Msa0047150:intron 55.0%
GAAGCGTATGGAGGCAGTAG+GGG - chr1_1:79858121-79858140 Msa0047150:intron 55.0%
TGCCACAAACCCGATCGCAA+AGG - chr1_1:79856454-79856473 Msa0047150:intron 55.0%
CTCCTTAGGGCATAGGTAGC+CGG + chr1_1:79857703-79857722 None:intergenic 55.0%
GTGAAGCGTATGGAGGCAGT+AGG - chr1_1:79858119-79858138 Msa0047150:intron 55.0%
GAAGCGTATGGAGGCAGTAG+GGG - chr1_1:79858121-79858140 Msa0047150:intron 55.0%
GTTGCTGTGCGCACTGCCAT+CGG - chr1_1:79856585-79856604 Msa0047150:intron 60.0%
GACCGGCTACCTATGCCCTA+AGG - chr1_1:79857698-79857717 Msa0047150:intron 60.0%
GTTGCTGTGCGCACTGCCAT+CGG - chr1_1:79856585-79856604 Msa0047150:intron 60.0%
GACCGGCTACCTATGCCCTA+AGG - chr1_1:79857698-79857717 Msa0047150:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79856043 79858454 79856043 ID=Msa0047150;Name=Msa0047150
chr1_1 mRNA 79856043 79858454 79856043 ID=Msa0047150-mRNA-1;Parent=Msa0047150;Name=Msa0047150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=171|1|1|1|0.5|0.6|5|341|69
chr1_1 exon 79856043 79856067 79856043 ID=Msa0047150-mRNA-1:exon:27573;Parent=Msa0047150-mRNA-1
chr1_1 exon 79856100 79856415 79856100 ID=Msa0047150-mRNA-1:exon:27572;Parent=Msa0047150-mRNA-1
chr1_1 exon 79857808 79857923 79857808 ID=Msa0047150-mRNA-1:exon:27571;Parent=Msa0047150-mRNA-1
chr1_1 exon 79858022 79858126 79858022 ID=Msa0047150-mRNA-1:exon:27570;Parent=Msa0047150-mRNA-1
chr1_1 exon 79858295 79858454 79858295 ID=Msa0047150-mRNA-1:exon:27569;Parent=Msa0047150-mRNA-1
chr1_1 five_prime_UTR 79858295 79858454 79858295 ID=Msa0047150-mRNA-1:five_prime_utr;Parent=Msa0047150-mRNA-1
chr1_1 five_prime_UTR 79858116 79858126 79858116 ID=Msa0047150-mRNA-1:five_prime_utr;Parent=Msa0047150-mRNA-1
chr1_1 CDS 79858022 79858115 79858022 ID=Msa0047150-mRNA-1:cds;Parent=Msa0047150-mRNA-1
chr1_1 CDS 79857808 79857923 79857808 ID=Msa0047150-mRNA-1:cds;Parent=Msa0047150-mRNA-1
chr1_1 three_prime_UTR 79856100 79856415 79856100 ID=Msa0047150-mRNA-1:three_prime_utr;Parent=Msa0047150-mRNA-1
chr1_1 three_prime_UTR 79856043 79856067 79856043 ID=Msa0047150-mRNA-1:three_prime_utr;Parent=Msa0047150-mRNA-1
Gene Sequence

>Msa0047150

ATGGACGCCATTGATTCTGTTTTCGATCCACTCAGAGAATTCGCTAAGGACAGCGTAAGGCTCGTCAAGCGATGCCACAAACCCGATCGCAAAGAATTCTCTAAGGTTGCTGTGCGCACTGCCATCGGTTTCGTTGTGATGGGATTCGTTGGCTTTTTCGTTAAGCTCATTTTCATTCCAATTAACAACATCATCGTTGGATCTGGTTAG
Protein sequence

>Msa0047150

MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG*