AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049030 MtrunA17_Chr5g0437131 84.667 300 38 1 88 379 239 538 7.97e-163 481
Msa0049030 MtrunA17_Chr8g0371291 78.667 150 25 1 379 528 80 222 3.68e-79 249
Msa0049030 MtrunA17_Chr6g0480541 61.991 221 62 5 213 421 859 1069 1.55e-73 255
Msa0049030 MtrunA17_Chr5g0406031 68.000 150 47 1 379 528 83 231 3.27e-65 213
Msa0049030 MtrunA17_Chr6g0480481 52.174 161 33 2 227 379 9 133 1.71e-41 149
Msa0049030 MtrunA17_Chr8g0369241 38.378 185 95 5 210 379 91 271 2.82e-24 108
Msa0049030 MtrunA17_Chr4g0060981 35.443 158 86 4 379 528 67 216 1.32e-21 93.6
Msa0049030 MtrunA17_Chr3g0126701 77.358 53 12 0 528 580 510 562 2.03e-20 95.9
Msa0049030 MtrunA17_Chr5g0444161 33.333 132 66 6 408 528 107 227 9.63e-14 71.2
Msa0049030 MtrunA17_Chr1g0147121 61.224 49 19 0 532 580 483 531 1.00e-13 74.7
Msa0049030 MtrunA17_Chr5g0444141 33.333 123 78 3 408 528 142 262 1.96e-12 67.8
Msa0049030 MtrunA17_Chr1g0210061 33.562 146 80 4 247 379 605 746 2.18e-12 70.1
Msa0049030 MtrunA17_Chr8g0388231 43.421 76 42 1 457 532 309 383 3.65e-12 68.6
Msa0049030 MtrunA17_Chr4g0067591 35.065 77 45 1 452 528 75 146 4.44e-12 67.0
Msa0049030 MtrunA17_Chr6g0451031 48.889 45 23 0 484 528 67 111 4.44e-12 63.5
Msa0049030 MtrunA17_Chr3g0128771 41.026 78 39 2 456 530 90 163 5.85e-12 64.7
Msa0049030 MtrunA17_Chr7g0246761 32.558 129 64 5 406 528 21 132 6.34e-12 64.7
Msa0049030 MtrunA17_Chr5g0411081 37.209 86 47 1 443 528 112 190 8.43e-12 67.0
Msa0049030 MtrunA17_Chr8g0366561 43.243 74 41 1 457 530 114 186 1.14e-11 66.6
Msa0049030 MtrunA17_Chr8g0369571 48.889 45 23 0 484 528 88 132 2.97e-11 62.8
Msa0049030 MtrunA17_Chr5g0437361 37.209 86 53 1 450 535 68 152 4.55e-11 62.0
Msa0049030 MtrunA17_Chr6g0451051 31.915 94 61 1 456 549 39 129 5.54e-11 61.2
Msa0049030 MtrunA17_Chr6g0451041 42.188 64 37 0 486 549 18 81 7.91e-11 59.3
Msa0049030 MtrunA17_Chr8g0383921 32.692 104 65 2 455 558 109 207 9.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049030 AT2G40120.1 72.941 170 38 1 218 379 227 396 4.45e-77 255
Msa0049030 AT1G73460.2 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa0049030 AT1G73460.1 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa0049030 AT1G73450.1 66.857 175 50 1 213 379 802 976 2.00e-70 246
Msa0049030 AT3G17750.1 64.571 175 54 1 213 379 788 962 1.46e-66 235
Msa0049030 AT2G17730.1 64.667 150 53 0 379 528 89 238 3.35e-63 208
Msa0049030 AT4G35840.1 64.667 150 53 0 379 528 84 233 1.81e-62 206
Msa0049030 AT5G66070.5 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa0049030 AT5G66070.1 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa0049030 AT2G17730.2 64.336 143 51 0 379 521 89 231 3.80e-58 195
Msa0049030 AT4G35840.2 53.297 182 53 1 379 528 84 265 8.72e-56 189
Msa0049030 AT5G66070.2 54.598 174 50 2 379 528 74 242 2.71e-53 182
Msa0049030 AT5G66070.4 58.929 112 41 1 380 491 75 181 6.33e-36 133
Msa0049030 AT5G66070.3 48.175 137 42 2 379 491 74 205 1.04e-28 114
Msa0049030 AT1G74410.1 36.000 150 93 1 381 530 74 220 3.18e-24 101
Msa0049030 AT5G35980.2 37.569 181 94 5 228 393 92 268 4.48e-23 104
Msa0049030 AT5G35980.3 37.705 183 91 6 228 393 57 233 4.61e-23 104
Msa0049030 AT5G35980.1 37.705 183 91 6 228 393 92 268 4.78e-23 104
Msa0049030 AT3G20395.1 33.333 123 76 2 408 529 97 214 7.74e-16 77.4
Msa0049030 AT3G18773.1 39.560 91 49 2 451 537 97 185 2.69e-13 70.1
Msa0049030 AT5G53430.1 52.632 57 27 0 526 582 486 542 9.76e-13 72.0
Msa0049030 AT1G49200.1 41.892 74 41 1 455 528 107 178 1.30e-12 68.2
Msa0049030 AT2G17450.1 37.179 78 45 1 455 528 67 144 3.78e-12 65.9
Msa0049030 AT5G05280.1 41.333 75 40 1 456 530 87 157 4.55e-12 65.5
Msa0049030 AT4G27910.1 52.941 51 24 0 532 582 477 527 1.30e-11 68.2
Msa0049030 AT5G17600.1 40.000 90 49 2 439 528 100 184 2.77e-11 65.9
Msa0049030 AT1G49210.1 40.541 74 42 1 455 528 106 177 2.88e-11 63.9
Msa0049030 AT5G01880.1 41.558 77 41 2 455 530 76 149 4.68e-11 62.0
Msa0049030 AT3G16720.1 36.364 77 45 1 452 528 89 161 5.35e-11 64.3
Msa0049030 AT2G27940.1 39.241 79 38 2 456 531 114 185 8.04e-11 63.2
Msa0049030 AT5G53110.1 35.443 79 50 1 457 535 302 379 8.20e-11 64.7
Msa0049030 AT5G10380.1 37.209 86 50 2 443 528 96 177 8.37e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGCTACCTTAATTTAA+AGG 0.143063 1_2:+2183646 Msa0049030:CDS
CTTTGGCATTCGAATAATTC+TGG 0.197162 1_2:+2184469 Msa0049030:CDS
CATAAATTCAACCAAGAATA+TGG 0.227119 1_2:+2184292 Msa0049030:CDS
GCTTAATTTCCTTTAAATTA+AGG 0.237843 1_2:-2183655 None:intergenic
ATGCTTCACCACCATATTCT+TGG 0.272074 1_2:-2184303 None:intergenic
TTAAGGTAGCTAATGTTTAT+AGG 0.288253 1_2:-2183638 None:intergenic
TGCTCACTGTCTCTGCATAA+TGG 0.302576 1_2:-2184865 None:intergenic
ACAGAAAAGCAAGCACTTAA+TGG 0.303631 1_2:+2184988 Msa0049030:CDS
TTCCTGTTCAATTTGCCTTC+AGG 0.305106 1_2:+2184744 Msa0049030:CDS
TTGTATGTTCTATTGATCTT+TGG 0.316674 1_2:+2184452 Msa0049030:CDS
CATTACTCGACAGTGTTTAG+AGG 0.319594 1_2:+2184351 Msa0049030:CDS
GGTTAAACGTATGATGATAA+TGG 0.326660 1_2:-2184801 None:intergenic
CATTCGAATAATTCTGGAAT+AGG 0.333342 1_2:+2184475 Msa0049030:CDS
CACTTGTGATTGAGACTATT+GGG 0.340792 1_2:-2184690 None:intergenic
GTTAAACGTATGATGATAAT+GGG 0.346709 1_2:-2184800 None:intergenic
TAGCTTCGATCCGGAGGTTT+GGG 0.350467 1_2:-2183380 None:intergenic
ATGCGCAATGGCTTCTTTCT+CGG 0.367067 1_2:-2183555 None:intergenic
TCACTTGTGATTGAGACTAT+TGG 0.368196 1_2:-2184691 None:intergenic
ATAGCTTCGATCCGGAGGTT+TGG 0.378202 1_2:-2183381 None:intergenic
TTCTAACAGTCTCTCCCATT+TGG 0.383802 1_2:-2184771 None:intergenic
GCTCACTGTCTCTGCATAAT+GGG 0.397596 1_2:-2184864 None:intergenic
GCAATCTGAACTATGCTTCA+TGG 0.399375 1_2:-2183738 None:intergenic
AGACAGAATTATGAGGCTTC+AGG 0.401315 1_2:-2184414 None:intergenic
ATTGCAATATTTACATAACT+TGG 0.409904 1_2:+2184375 Msa0049030:CDS
TAAGAAGCTTGATTTCATCT+AGG 0.411237 1_2:-2184147 None:intergenic
TGCCTTCAGGATTTCCAAAT+GGG 0.419108 1_2:+2184757 Msa0049030:CDS
GAGTGAAGAACTCCATGTTC+CGG 0.421411 1_2:+2183853 Msa0049030:CDS
CGATCCGGAGGTTTGGGTAG+TGG 0.425881 1_2:-2183374 None:intergenic
TTTCAACATATCTTTGACAT+TGG 0.427382 1_2:+2184628 Msa0049030:CDS
GTTCAGCAGGTTCTTGTAGT+GGG 0.431132 1_2:+2183612 Msa0049030:CDS
ATCCTGAAGGCAAATTGAAC+AGG 0.433788 1_2:-2184746 None:intergenic
GTTGCTGCAGCAGCTCACGC+CGG 0.436700 1_2:+2185701 Msa0049030:intron
GGATGTGACAGAGGCTTACT+AGG 0.444182 1_2:+2184649 Msa0049030:CDS
GGCTTCTTTCTCGGCACTGA+GGG 0.450284 1_2:-2183546 None:intergenic
TCTGGTGGTGCAGGAAGTGG+TGG 0.450710 1_2:-2183452 None:intergenic
TATTTCAACAAACATGTAAT+GGG 0.455848 1_2:-2183522 None:intergenic
TTATGACTATTTCTACCATC+AGG 0.460782 1_2:+2184219 Msa0049030:CDS
TCTCCATCTGTGGCAGCCTC+CGG 0.462617 1_2:-2183872 None:intergenic
TTGCTGCAGCAGCTCACGCC+GGG 0.462792 1_2:+2185702 Msa0049030:intron
TTGCCTTCAGGATTTCCAAA+TGG 0.467728 1_2:+2184756 Msa0049030:CDS
CTACAAGAACCTGCTGAACC+TGG 0.473048 1_2:-2183608 None:intergenic
GTGTCTGGTGGTGCAGGAAG+TGG 0.476291 1_2:-2183455 None:intergenic
TTGGGTAGTGGCGGCAGAGT+CGG 0.481200 1_2:-2183362 None:intergenic
TAAGTTTGCACGCAGAAGTT+CGG 0.485105 1_2:-2184260 None:intergenic
AAAAGCAGTCCAGGTTCAGC+AGG 0.497375 1_2:+2183599 Msa0049030:CDS
CACTTAGTTGTGTGCAAGTG+TGG 0.500438 1_2:+2184955 Msa0049030:CDS
CTGTGGCAGCCTCCGGAACA+TGG 0.502526 1_2:-2183865 None:intergenic
GGTTCAGCAGGTTCTTGTAG+TGG 0.505056 1_2:+2183611 Msa0049030:CDS
TTGCAATATTTACATAACTT+GGG 0.506178 1_2:+2184376 Msa0049030:CDS
AGTATGTGGCGTTTATCTCC+CGG 0.506715 1_2:-2184190 None:intergenic
GTTCCGGAGGCTGCCACAGA+TGG 0.508408 1_2:+2183869 Msa0049030:CDS
ATCTTCTGATAGCTTCGATC+CGG 0.508560 1_2:-2183389 None:intergenic
ATAGAGAAGACAGAATTATG+AGG 0.508809 1_2:-2184421 None:intergenic
CACACAACTAAGTGTAGGCT+TGG 0.511853 1_2:-2184946 None:intergenic
GTATTTCAACAAACATGTAA+TGG 0.512226 1_2:-2183523 None:intergenic
CCATTGCTTTCAATCCCATT+CGG 0.516665 1_2:-2183809 None:intergenic
ACCTACCTTGCATTGACAAG+TGG 0.517649 1_2:+2184821 Msa0049030:CDS
ACCAGACACCGAAAATAGAT+TGG 0.519369 1_2:+2183469 Msa0049030:CDS
GGAGTTCTTCACTCAAATAT+CGG 0.520249 1_2:-2183844 None:intergenic
ATCTGTTTCAACAACTTCGA+TGG 0.530198 1_2:-2183783 None:intergenic
GCCATTTGTTGATCATGCCC+CGG 0.533576 1_2:-2185720 None:intergenic
TTGAAACAGATCTACCGAAT+GGG 0.535513 1_2:+2183795 Msa0049030:CDS
TAAAGGAAATTAAGCTGAGT+CGG 0.536864 1_2:+2183663 Msa0049030:CDS
GGTGGTGCAGGAAGTGGTGG+AGG 0.539230 1_2:-2183449 None:intergenic
TCGGTTCAGCTACCTTCAGT+AGG 0.540246 1_2:+2184065 Msa0049030:CDS
TTCTGATAGCTTCGATCCGG+AGG 0.545370 1_2:-2183386 None:intergenic
GATTGTGCTGAACACGGTCA+TGG 0.546919 1_2:+2184015 Msa0049030:CDS
GTGCATGGAAAGAATAGGAC+TGG 0.553009 1_2:+2183968 Msa0049030:CDS
GCCGCCACTACCCAAACCTC+CGG 0.562559 1_2:+2183370 Msa0049030:CDS
AACTTCAGAATTATGCGCAA+TGG 0.563755 1_2:-2183567 None:intergenic
GTATGTGGCGTTTATCTCCC+GGG 0.564712 1_2:-2184189 None:intergenic
TTCAGCAGGTTCTTGTAGTG+GGG 0.568017 1_2:+2183613 Msa0049030:CDS
GTACAAGTCTCCCACTCACT+AGG 0.571667 1_2:-2184531 None:intergenic
AGTCATAAAGACGCAGTATG+TGG 0.573921 1_2:-2184204 None:intergenic
TGCAGGAAGTGGTGGAGGCA+AGG 0.579538 1_2:-2183444 None:intergenic
GACAAGTGGCTCATCAAGCA+TGG 0.579677 1_2:+2184835 Msa0049030:CDS
CTCCCATTTGGAAATCCTGA+AGG 0.579740 1_2:-2184759 None:intergenic
GAATTGTGCATGGAAAGAAT+AGG 0.580039 1_2:+2183963 Msa0049030:CDS
TTCAGTAGGGATGCTCTCGA+TGG 0.583985 1_2:+2184079 Msa0049030:CDS
CGGTTCAGCTACCTTCAGTA+GGG 0.590898 1_2:+2184066 Msa0049030:CDS
TGCTGCAGCAGCTCACGCCG+GGG 0.593738 1_2:+2185703 Msa0049030:intron
GTTCAAAGTCAGATGGGTGC+AGG 0.598923 1_2:+2184586 Msa0049030:CDS
AAAAGCAAGCACTTAATGGA+TGG 0.599900 1_2:+2184992 Msa0049030:CDS
CAATGAATAAATGTTCCTGA+TGG 0.601057 1_2:-2184234 None:intergenic
GAATGCTGTTCAAAGTCAGA+TGG 0.601226 1_2:+2184579 Msa0049030:CDS
GGGATTGAAAGCAATGGAGT+AGG 0.601533 1_2:+2183815 Msa0049030:CDS
TTATTACTAGCCTAGTGAGT+GGG 0.602053 1_2:+2184521 Msa0049030:CDS
TGTGAATGTTTCGATAGTAG+TGG 0.604151 1_2:-2183323 None:intergenic
GGTGAAATTCATCACAACAT+CGG 0.604562 1_2:+2183490 Msa0049030:CDS
TCCGGAGGTTTGGGTAGTGG+CGG 0.605445 1_2:-2183371 None:intergenic
ATGAGCCACTTGTCAATGCA+AGG 0.605600 1_2:-2184826 None:intergenic
GTTGAAACAGATCTACCGAA+TGG 0.607989 1_2:+2183794 Msa0049030:CDS
CCGAATGGGATTGAAAGCAA+TGG 0.608264 1_2:+2183809 Msa0049030:CDS
TTTGACATTGGATGTGACAG+AGG 0.609823 1_2:+2184640 Msa0049030:CDS
TTTGAGCTAAGAATTGTGCA+TGG 0.611242 1_2:+2183953 Msa0049030:CDS
GACTGGATTTGAAGAAAACA+AGG 0.612197 1_2:+2183985 Msa0049030:CDS
TGGCTTCTTTCTCGGCACTG+AGG 0.612609 1_2:-2183547 None:intergenic
ATCGAGAGCATCCCTACTGA+AGG 0.612994 1_2:-2184077 None:intergenic
GCATAGTTCAGATTGCTACA+AGG 0.615746 1_2:+2183745 Msa0049030:CDS
TACTATGTGACAGATTATCT+CGG 0.618368 1_2:+2184046 Msa0049030:CDS
ATTATTATCCTCTCCATCTG+TGG 0.619270 1_2:-2183882 None:intergenic
TGAACACGGTCATGGCTGAA+AGG 0.620232 1_2:+2184023 Msa0049030:CDS
CTTGTCGATAAGCACGACCC+GGG 0.628203 1_2:+2184172 Msa0049030:CDS
ACTTGCACACAACTAAGTGT+AGG 0.640898 1_2:-2184951 None:intergenic
ACTTTGAACAGCATTCAACA+TGG 0.643300 1_2:-2184572 None:intergenic
GGAGGCTGCCACAGATGGAG+AGG 0.645603 1_2:+2183874 Msa0049030:CDS
AAGCTATCAGAAGATTCTCG+TGG 0.653064 1_2:+2183397 Msa0049030:CDS
ATTATTACTAGCCTAGTGAG+TGG 0.653310 1_2:+2184520 Msa0049030:CDS
TGAAGAACTCCATGTTCCGG+AGG 0.656619 1_2:+2183856 Msa0049030:CDS
AATGCTGTTCAAAGTCAGAT+GGG 0.656650 1_2:+2184580 Msa0049030:CDS
ACTTGTCGATAAGCACGACC+CGG 0.656700 1_2:+2184171 Msa0049030:CDS
GCTTCTTTCTCGGCACTGAG+GGG 0.663612 1_2:-2183545 None:intergenic
AAATTCAACCAAGAATATGG+TGG 0.668921 1_2:+2184295 Msa0049030:CDS
TTAAACGTATGATGATAATG+GGG 0.679275 1_2:-2184799 None:intergenic
AGACTTGTACGTGAAAGAGT+TGG 0.691935 1_2:+2184544 Msa0049030:CDS
GCCACTTGTCAATGCAAGGT+AGG 0.694066 1_2:-2184822 None:intergenic
AATGGATGGCAACAACACAA+AGG 0.695166 1_2:+2185006 Msa0049030:CDS
AGTGCTGATTGTGCTGAACA+CGG 0.717577 1_2:+2184009 Msa0049030:CDS
AGAGTCGGAGTGAAAACACG+TGG 0.744559 1_2:-2183347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAACAAACATGTAAT+GGG - chr1_2:2183525-2183544 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - chr1_2:2183658-2183677 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + chr1_2:2184108-2184127 Msa0049030:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + chr1_2:2184375-2184394 Msa0049030:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + chr1_2:2184376-2184395 Msa0049030:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + chr1_2:2184904-2184923 Msa0049030:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr1_2:2185352-2185371 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + chr1_2:2185391-2185410 Msa0049030:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + chr1_2:2185392-2185411 Msa0049030:intron 20.0%
!! TATTTCAACAAACATGTAAT+GGG - chr1_2:2183525-2183544 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - chr1_2:2183658-2183677 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + chr1_2:2184108-2184127 Msa0049030:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + chr1_2:2184375-2184394 Msa0049030:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + chr1_2:2184376-2184395 Msa0049030:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + chr1_2:2184904-2184923 Msa0049030:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr1_2:2185352-2185371 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + chr1_2:2185391-2185410 Msa0049030:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + chr1_2:2185392-2185411 Msa0049030:intron 20.0%
!! GAATTTCACCAATCTATTTT+CGG - chr1_2:2183480-2183499 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - chr1_2:2183526-2183545 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - chr1_2:2183641-2183660 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + chr1_2:2183646-2183665 Msa0049030:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + chr1_2:2184292-2184311 Msa0049030:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + chr1_2:2184452-2184471 Msa0049030:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + chr1_2:2184628-2184647 Msa0049030:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - chr1_2:2184802-2184821 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - chr1_2:2184803-2184822 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - chr1_2:2185034-2185053 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + chr1_2:2185118-2185137 Msa0049030:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + chr1_2:2185119-2185138 Msa0049030:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + chr1_2:2185582-2185601 Msa0049030:intron 25.0%
!! GAATTTCACCAATCTATTTT+CGG - chr1_2:2183480-2183499 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - chr1_2:2183526-2183545 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - chr1_2:2183641-2183660 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + chr1_2:2183646-2183665 Msa0049030:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + chr1_2:2184292-2184311 Msa0049030:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + chr1_2:2184452-2184471 Msa0049030:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + chr1_2:2184628-2184647 Msa0049030:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - chr1_2:2184802-2184821 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - chr1_2:2184803-2184822 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - chr1_2:2185034-2185053 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + chr1_2:2185118-2185137 Msa0049030:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + chr1_2:2185119-2185138 Msa0049030:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + chr1_2:2185582-2185601 Msa0049030:intron 25.0%
TAAAGGAAATTAAGCTGAGT+CGG + chr1_2:2183663-2183682 Msa0049030:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + chr1_2:2183682-2183701 Msa0049030:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + chr1_2:2183683-2183702 Msa0049030:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - chr1_2:2183919-2183938 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + chr1_2:2184046-2184065 Msa0049030:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - chr1_2:2184150-2184169 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + chr1_2:2184219-2184238 Msa0049030:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - chr1_2:2184237-2184256 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + chr1_2:2184295-2184314 Msa0049030:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - chr1_2:2184424-2184443 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + chr1_2:2184475-2184494 Msa0049030:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - chr1_2:2184804-2184823 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + chr1_2:2185025-2185044 Msa0049030:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + chr1_2:2185055-2185074 Msa0049030:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + chr1_2:2185253-2185272 Msa0049030:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - chr1_2:2185410-2185429 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - chr1_2:2185411-2185430 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - chr1_2:2185457-2185476 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr1_2:2185528-2185547 None:intergenic 30.0%
TAAAGGAAATTAAGCTGAGT+CGG + chr1_2:2183663-2183682 Msa0049030:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + chr1_2:2183682-2183701 Msa0049030:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + chr1_2:2183683-2183702 Msa0049030:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - chr1_2:2183919-2183938 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + chr1_2:2184046-2184065 Msa0049030:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - chr1_2:2184150-2184169 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + chr1_2:2184219-2184238 Msa0049030:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - chr1_2:2184237-2184256 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + chr1_2:2184295-2184314 Msa0049030:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - chr1_2:2184424-2184443 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + chr1_2:2184475-2184494 Msa0049030:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - chr1_2:2184804-2184823 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + chr1_2:2185025-2185044 Msa0049030:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + chr1_2:2185055-2185074 Msa0049030:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + chr1_2:2185253-2185272 Msa0049030:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - chr1_2:2185410-2185429 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - chr1_2:2185411-2185430 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - chr1_2:2185457-2185476 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr1_2:2185528-2185547 None:intergenic 30.0%
TGTGAATGTTTCGATAGTAG+TGG - chr1_2:2183326-2183345 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + chr1_2:2183490-2183509 Msa0049030:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - chr1_2:2183570-2183589 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - chr1_2:2183786-2183805 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + chr1_2:2183795-2183814 Msa0049030:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - chr1_2:2183847-2183866 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - chr1_2:2183885-2183904 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + chr1_2:2183953-2183972 Msa0049030:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + chr1_2:2183963-2183982 Msa0049030:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + chr1_2:2183985-2184004 Msa0049030:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + chr1_2:2184469-2184488 Msa0049030:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + chr1_2:2184520-2184539 Msa0049030:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + chr1_2:2184521-2184540 Msa0049030:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - chr1_2:2184575-2184594 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + chr1_2:2184580-2184599 Msa0049030:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - chr1_2:2184693-2184712 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - chr1_2:2184694-2184713 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + chr1_2:2184712-2184731 Msa0049030:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + chr1_2:2184988-2185007 Msa0049030:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + chr1_2:2184992-2185011 Msa0049030:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + chr1_2:2185440-2185459 Msa0049030:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + chr1_2:2185489-2185508 Msa0049030:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + chr1_2:2185492-2185511 Msa0049030:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - chr1_2:2185521-2185540 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - chr1_2:2185529-2185548 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr1_2:2185558-2185577 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr1_2:2185559-2185578 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + chr1_2:2185647-2185666 Msa0049030:intron 35.0%
TGTGAATGTTTCGATAGTAG+TGG - chr1_2:2183326-2183345 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + chr1_2:2183490-2183509 Msa0049030:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - chr1_2:2183570-2183589 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - chr1_2:2183786-2183805 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + chr1_2:2183795-2183814 Msa0049030:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - chr1_2:2183847-2183866 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - chr1_2:2183885-2183904 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + chr1_2:2183953-2183972 Msa0049030:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + chr1_2:2183963-2183982 Msa0049030:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + chr1_2:2183985-2184004 Msa0049030:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + chr1_2:2184469-2184488 Msa0049030:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + chr1_2:2184520-2184539 Msa0049030:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + chr1_2:2184521-2184540 Msa0049030:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - chr1_2:2184575-2184594 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + chr1_2:2184580-2184599 Msa0049030:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - chr1_2:2184693-2184712 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - chr1_2:2184694-2184713 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + chr1_2:2184712-2184731 Msa0049030:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + chr1_2:2184988-2185007 Msa0049030:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + chr1_2:2184992-2185011 Msa0049030:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + chr1_2:2185440-2185459 Msa0049030:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + chr1_2:2185489-2185508 Msa0049030:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + chr1_2:2185492-2185511 Msa0049030:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - chr1_2:2185521-2185540 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - chr1_2:2185529-2185548 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr1_2:2185558-2185577 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr1_2:2185559-2185578 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + chr1_2:2185647-2185666 Msa0049030:intron 35.0%
ATCTTCTGATAGCTTCGATC+CGG - chr1_2:2183392-2183411 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + chr1_2:2183397-2183416 Msa0049030:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - chr1_2:2183470-2183489 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + chr1_2:2183469-2183488 Msa0049030:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - chr1_2:2183473-2183492 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - chr1_2:2183741-2183760 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + chr1_2:2183745-2183764 Msa0049030:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + chr1_2:2183794-2183813 Msa0049030:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - chr1_2:2183812-2183831 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - chr1_2:2184207-2184226 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - chr1_2:2184263-2184282 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - chr1_2:2184306-2184325 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + chr1_2:2184351-2184370 Msa0049030:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - chr1_2:2184417-2184436 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + chr1_2:2184544-2184563 Msa0049030:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + chr1_2:2184579-2184598 Msa0049030:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + chr1_2:2184640-2184659 Msa0049030:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + chr1_2:2184744-2184763 Msa0049030:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - chr1_2:2184749-2184768 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + chr1_2:2184756-2184775 Msa0049030:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + chr1_2:2184757-2184776 Msa0049030:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - chr1_2:2184774-2184793 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - chr1_2:2184954-2184973 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + chr1_2:2184965-2184984 Msa0049030:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + chr1_2:2185006-2185025 Msa0049030:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - chr1_2:2185084-2185103 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + chr1_2:2185083-2185102 Msa0049030:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + chr1_2:2185176-2185195 Msa0049030:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + chr1_2:2185223-2185242 Msa0049030:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + chr1_2:2185224-2185243 Msa0049030:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + chr1_2:2185518-2185537 Msa0049030:intron 40.0%
ATCTTCTGATAGCTTCGATC+CGG - chr1_2:2183392-2183411 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + chr1_2:2183397-2183416 Msa0049030:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - chr1_2:2183470-2183489 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + chr1_2:2183469-2183488 Msa0049030:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - chr1_2:2183473-2183492 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - chr1_2:2183741-2183760 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + chr1_2:2183745-2183764 Msa0049030:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + chr1_2:2183794-2183813 Msa0049030:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - chr1_2:2183812-2183831 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - chr1_2:2184207-2184226 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - chr1_2:2184263-2184282 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - chr1_2:2184306-2184325 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + chr1_2:2184351-2184370 Msa0049030:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - chr1_2:2184417-2184436 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + chr1_2:2184544-2184563 Msa0049030:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + chr1_2:2184579-2184598 Msa0049030:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + chr1_2:2184640-2184659 Msa0049030:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + chr1_2:2184744-2184763 Msa0049030:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - chr1_2:2184749-2184768 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + chr1_2:2184756-2184775 Msa0049030:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + chr1_2:2184757-2184776 Msa0049030:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - chr1_2:2184774-2184793 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - chr1_2:2184954-2184973 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + chr1_2:2184965-2184984 Msa0049030:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + chr1_2:2185006-2185025 Msa0049030:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - chr1_2:2185084-2185103 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + chr1_2:2185083-2185102 Msa0049030:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + chr1_2:2185176-2185195 Msa0049030:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + chr1_2:2185223-2185242 Msa0049030:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + chr1_2:2185224-2185243 Msa0049030:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + chr1_2:2185518-2185537 Msa0049030:intron 40.0%
ATGCGCAATGGCTTCTTTCT+CGG - chr1_2:2183558-2183577 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - chr1_2:2183593-2183612 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + chr1_2:2183590-2183609 Msa0049030:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + chr1_2:2183612-2183631 Msa0049030:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + chr1_2:2183613-2183632 Msa0049030:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + chr1_2:2183809-2183828 Msa0049030:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + chr1_2:2183815-2183834 Msa0049030:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + chr1_2:2183853-2183872 Msa0049030:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + chr1_2:2183968-2183987 Msa0049030:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + chr1_2:2184009-2184028 Msa0049030:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - chr1_2:2184193-2184212 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - chr1_2:2184762-2184781 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + chr1_2:2184821-2184840 Msa0049030:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - chr1_2:2184829-2184848 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - chr1_2:2184867-2184886 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - chr1_2:2184868-2184887 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - chr1_2:2184949-2184968 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + chr1_2:2184955-2184974 Msa0049030:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + chr1_2:2184964-2184983 Msa0049030:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + chr1_2:2185073-2185092 Msa0049030:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + chr1_2:2185077-2185096 Msa0049030:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + chr1_2:2185175-2185194 Msa0049030:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - chr1_2:2185181-2185200 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + chr1_2:2185183-2185202 Msa0049030:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + chr1_2:2185499-2185518 Msa0049030:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + chr1_2:2185627-2185646 Msa0049030:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - chr1_2:2185633-2185652 None:intergenic 45.0%
ATGCGCAATGGCTTCTTTCT+CGG - chr1_2:2183558-2183577 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - chr1_2:2183593-2183612 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + chr1_2:2183590-2183609 Msa0049030:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + chr1_2:2183612-2183631 Msa0049030:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + chr1_2:2183613-2183632 Msa0049030:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + chr1_2:2183809-2183828 Msa0049030:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + chr1_2:2183815-2183834 Msa0049030:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + chr1_2:2183853-2183872 Msa0049030:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + chr1_2:2183968-2183987 Msa0049030:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + chr1_2:2184009-2184028 Msa0049030:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - chr1_2:2184193-2184212 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - chr1_2:2184762-2184781 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + chr1_2:2184821-2184840 Msa0049030:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - chr1_2:2184829-2184848 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - chr1_2:2184867-2184886 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - chr1_2:2184868-2184887 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - chr1_2:2184949-2184968 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + chr1_2:2184955-2184974 Msa0049030:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + chr1_2:2184964-2184983 Msa0049030:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + chr1_2:2185073-2185092 Msa0049030:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + chr1_2:2185077-2185096 Msa0049030:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + chr1_2:2185175-2185194 Msa0049030:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - chr1_2:2185181-2185200 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + chr1_2:2185183-2185202 Msa0049030:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + chr1_2:2185499-2185518 Msa0049030:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + chr1_2:2185627-2185646 Msa0049030:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - chr1_2:2185633-2185652 None:intergenic 45.0%
AGAGTCGGAGTGAAAACACG+TGG - chr1_2:2183350-2183369 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - chr1_2:2183383-2183402 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - chr1_2:2183384-2183403 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - chr1_2:2183389-2183408 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + chr1_2:2183599-2183618 Msa0049030:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - chr1_2:2183611-2183630 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + chr1_2:2183611-2183630 Msa0049030:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + chr1_2:2183856-2183875 Msa0049030:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + chr1_2:2184015-2184034 Msa0049030:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + chr1_2:2184023-2184042 Msa0049030:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + chr1_2:2184065-2184084 Msa0049030:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + chr1_2:2184066-2184085 Msa0049030:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - chr1_2:2184080-2184099 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + chr1_2:2184079-2184098 Msa0049030:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + chr1_2:2184171-2184190 Msa0049030:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - chr1_2:2184192-2184211 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - chr1_2:2184534-2184553 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + chr1_2:2184586-2184605 Msa0049030:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + chr1_2:2184649-2184668 Msa0049030:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - chr1_2:2184825-2184844 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + chr1_2:2184835-2184854 Msa0049030:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + chr1_2:2185186-2185205 Msa0049030:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + chr1_2:2185187-2185206 Msa0049030:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + chr1_2:2185205-2185224 Msa0049030:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + chr1_2:2185208-2185227 Msa0049030:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + chr1_2:2185292-2185311 Msa0049030:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - chr1_2:2185623-2185642 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - chr1_2:2185624-2185643 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + chr1_2:2185626-2185645 Msa0049030:intron 50.0%
AGAGTCGGAGTGAAAACACG+TGG - chr1_2:2183350-2183369 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - chr1_2:2183383-2183402 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - chr1_2:2183384-2183403 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - chr1_2:2183389-2183408 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + chr1_2:2183599-2183618 Msa0049030:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - chr1_2:2183611-2183630 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + chr1_2:2183611-2183630 Msa0049030:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + chr1_2:2183856-2183875 Msa0049030:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + chr1_2:2184015-2184034 Msa0049030:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + chr1_2:2184023-2184042 Msa0049030:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + chr1_2:2184065-2184084 Msa0049030:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + chr1_2:2184066-2184085 Msa0049030:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - chr1_2:2184080-2184099 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + chr1_2:2184079-2184098 Msa0049030:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + chr1_2:2184171-2184190 Msa0049030:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - chr1_2:2184192-2184211 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - chr1_2:2184534-2184553 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + chr1_2:2184586-2184605 Msa0049030:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + chr1_2:2184649-2184668 Msa0049030:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - chr1_2:2184825-2184844 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + chr1_2:2184835-2184854 Msa0049030:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + chr1_2:2185186-2185205 Msa0049030:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + chr1_2:2185187-2185206 Msa0049030:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + chr1_2:2185205-2185224 Msa0049030:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + chr1_2:2185208-2185227 Msa0049030:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + chr1_2:2185292-2185311 Msa0049030:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - chr1_2:2185623-2185642 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - chr1_2:2185624-2185643 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + chr1_2:2185626-2185645 Msa0049030:intron 50.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - chr1_2:2183464-2183483 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - chr1_2:2183548-2183567 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - chr1_2:2183549-2183568 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - chr1_2:2183550-2183569 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + chr1_2:2184172-2184191 Msa0049030:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - chr1_2:2185204-2185223 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + chr1_2:2185269-2185288 Msa0049030:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + chr1_2:2185272-2185291 Msa0049030:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + chr1_2:2185288-2185307 Msa0049030:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + chr1_2:2185291-2185310 Msa0049030:intron 55.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - chr1_2:2183464-2183483 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - chr1_2:2183548-2183567 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - chr1_2:2183549-2183568 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - chr1_2:2183550-2183569 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + chr1_2:2184172-2184191 Msa0049030:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - chr1_2:2185204-2185223 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + chr1_2:2185269-2185288 Msa0049030:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + chr1_2:2185272-2185291 Msa0049030:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + chr1_2:2185288-2185307 Msa0049030:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + chr1_2:2185291-2185310 Msa0049030:intron 55.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - chr1_2:2183365-2183384 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - chr1_2:2183374-2183393 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - chr1_2:2183377-2183396 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - chr1_2:2183447-2183466 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - chr1_2:2183455-2183474 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - chr1_2:2183458-2183477 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - chr1_2:2183875-2183894 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + chr1_2:2185190-2185209 Msa0049030:intron 60.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - chr1_2:2183365-2183384 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - chr1_2:2183374-2183393 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - chr1_2:2183377-2183396 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - chr1_2:2183447-2183466 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - chr1_2:2183455-2183474 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - chr1_2:2183458-2183477 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - chr1_2:2183875-2183894 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + chr1_2:2185190-2185209 Msa0049030:intron 60.0%
GCCGCCACTACCCAAACCTC+CGG + chr1_2:2183370-2183389 Msa0049030:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - chr1_2:2183452-2183471 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - chr1_2:2183868-2183887 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + chr1_2:2183869-2183888 Msa0049030:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + chr1_2:2183874-2183893 Msa0049030:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + chr1_2:2185701-2185720 Msa0049030:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + chr1_2:2185702-2185721 Msa0049030:intron 65.0%
GCCGCCACTACCCAAACCTC+CGG + chr1_2:2183370-2183389 Msa0049030:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - chr1_2:2183452-2183471 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - chr1_2:2183868-2183887 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + chr1_2:2183869-2183888 Msa0049030:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + chr1_2:2183874-2183893 Msa0049030:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + chr1_2:2185701-2185720 Msa0049030:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + chr1_2:2185702-2185721 Msa0049030:intron 65.0%
TGCTGCAGCAGCTCACGCCG+GGG + chr1_2:2185703-2185722 Msa0049030:intron 70.0%
TGCTGCAGCAGCTCACGCCG+GGG + chr1_2:2185703-2185722 Msa0049030:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2183293 2185730 2183293 ID=Msa0049030;Name=Msa0049030
chr1_2 mRNA 2183293 2185730 2183293 ID=Msa0049030-mRNA-1;Parent=Msa0049030;Name=Msa0049030-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|584
chr1_2 exon 2183293 2185027 2183293 ID=Msa0049030-mRNA-1:exon:423;Parent=Msa0049030-mRNA-1
chr1_2 exon 2185711 2185730 2185711 ID=Msa0049030-mRNA-1:exon:424;Parent=Msa0049030-mRNA-1
chr1_2 CDS 2183293 2185027 2183293 ID=Msa0049030-mRNA-1:cds;Parent=Msa0049030-mRNA-1
chr1_2 CDS 2185711 2185730 2185711 ID=Msa0049030-mRNA-1:cds;Parent=Msa0049030-mRNA-1
Gene Sequence

>Msa0049030

ATGTTAAACACATCATCTTTGAATTGTAATCCACTACTATCGAAACATTCACATCCACGTGTTTTCACTCCGACTCTGCCGCCACTACCCAAACCTCCGGATCGAAGCTATCAGAAGATTCTCGTGGATTTTCAAGTGACACAAAATTTCACCTTGCCTCCACCACTTCCTGCACCACCAGACACCGAAAATAGATTGGTGAAATTCATCACAACATCGGTTTCTTGCGCCCATTACATGTTTGTTGAAATACCCCTCAGTGCCGAGAAAGAAGCCATTGCGCATAATTCTGAAGTTCCATTTTGCAAAAGCAGTCCAGGTTCAGCAGGTTCTTGTAGTGGGGATCCTATAAACATTAGCTACCTTAATTTAAAGGAAATTAAGCTGAGTCGGAATGATTTTCATATGAAGGGTATTAATTCTTTTGATTTTGTTCATGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCTCTATGACTTAACCATCGAAGTTGTTGAAACAGATCTACCGAATGGGATTGAAAGCAATGGAGTAGGTGATGACCGATATTTGAGTGAAGAACTCCATGTTCCGGAGGCTGCCACAGATGGAGAGGATAATAATACTAATGACGACCTCTTAAAATACAGTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTGCATGGAAAGAATAGGACTGGATTTGAAGAAAACAAGGAAGTGCTGATTGTGCTGAACACGGTCATGGCTGAAAGGTACTATGTGACAGATTATCTCGGTTCAGCTACCTTCAGTAGGGATGCTCTCGATGGTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTCATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCGATAAGCACGACCCGGGAGATAAACGCCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCATAAATTCAACCAAGAATATGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGCTCATTACTCGACAGTGTTTAGAGGCATTGCAATATTTACATAACTTGGGAATTATTCAATGTGACCTGAAGCCTCATAATTCTGTCTTCTCTATTGAAGTATTTGTATGTTCTATTGATCTTTGGCATTCGAATAATTCTGGAATAGGATGTTTCTTATACTTGATTGATATTATTACTAGCCTAGTGAGTGGGAGACTTGTACGTGAAAGAGTTGGTGAAGCCATGTTGAATGCTGTTCAAAGTCAGATGGGTGCAGGTGAAATGAGATTTTATGAGTTTCAACATATCTTTGACATTGGATGTGACAGAGGCTTACTAGGAGCTTCAGTTGAAAAGATCCCAATAGTCTCAATCACAAGTGACAACAATTTTGATGCTTGTGGCGATATAATTTCCTGTTCAATTTGCCTTCAGGATTTCCAAATGGGAGAGACTGTTAGAAGCTTGCCCCATTATCATCATACGTTTAACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGCTTGTGCCCATTATGCAGAGACAGTGAGCAGCTAGTGCTTTCAAATAAGATTAATGTTTTTTGCAATGGCGTGAAAAGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAATGGATGGCAACAACACAAAGCAGCTCACGCCGGGGCATGA

Protein sequence

>Msa0049030

MLNTSSLNCNPLLSKHSHPRVFTPTLPPLPKPPDRSYQKILVDFQVTQNFTLPPPLPAPPDTENRLVKFITTSVSCAHYMFVEIPLSAEKEAIAHNSEVPFCKSSPGSAGSCSGDPINISYLNLKEIKLSRNDFHMKGINSFDFVHVLTMKHSSDCYKDLYDLTIEVVETDLPNGIESNGVGDDRYLSEELHVPEAATDGEDNNTNDDLLKYSQDDEYEVFELRIVHGKNRTGFEENKEVLIVLNTVMAERYYVTDYLGSATFSRDALDGCLKIIKNDKDFFHQSLDEIKLLKLVDKHDPGDKRHILRLYDYFYHQEHLFIVTELLRANLYEFHKFNQEYGGEAYFTLKRLQLITRQCLEALQYLHNLGIIQCDLKPHNSVFSIEVFVCSIDLWHSNNSGIGCFLYLIDIITSLVSGRLVRERVGEAMLNAVQSQMGAGEMRFYEFQHIFDIGCDRGLLGASVEKIPIVSITSDNNFDACGDIISCSICLQDFQMGETVRSLPHYHHTFNLPCIDKWLIKHGLCPLCRDSEQLVLSNKINVFCNGVKSIYFPSLHLVVCKCGFCGTEKQALNGWQQHKAAHAGA*