Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049070 | AES99600.1 | 84.667 | 300 | 38 | 1 | 88 | 379 | 239 | 538 | 1.16e-159 | 480 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049070 | sp|Q8GT74|NIP2_ARATH | 64.667 | 150 | 53 | 0 | 379 | 528 | 89 | 238 | 3.29e-62 | 208 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049070 | G7K240 | 84.667 | 300 | 38 | 1 | 88 | 379 | 239 | 538 | 5.54e-160 | 480 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0049030 | Msa0049070 | 0.968196 | 2.465397e-128 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049070 | MtrunA17_Chr5g0437131 | 84.667 | 300 | 38 | 1 | 88 | 379 | 239 | 538 | 7.97e-163 | 481 |
Msa0049070 | MtrunA17_Chr8g0371291 | 78.667 | 150 | 25 | 1 | 379 | 528 | 80 | 222 | 3.68e-79 | 249 |
Msa0049070 | MtrunA17_Chr6g0480541 | 61.991 | 221 | 62 | 5 | 213 | 421 | 859 | 1069 | 1.55e-73 | 255 |
Msa0049070 | MtrunA17_Chr5g0406031 | 68.000 | 150 | 47 | 1 | 379 | 528 | 83 | 231 | 3.27e-65 | 213 |
Msa0049070 | MtrunA17_Chr6g0480481 | 52.174 | 161 | 33 | 2 | 227 | 379 | 9 | 133 | 1.71e-41 | 149 |
Msa0049070 | MtrunA17_Chr8g0369241 | 38.378 | 185 | 95 | 5 | 210 | 379 | 91 | 271 | 2.82e-24 | 108 |
Msa0049070 | MtrunA17_Chr4g0060981 | 35.443 | 158 | 86 | 4 | 379 | 528 | 67 | 216 | 1.32e-21 | 93.6 |
Msa0049070 | MtrunA17_Chr3g0126701 | 77.358 | 53 | 12 | 0 | 528 | 580 | 510 | 562 | 2.03e-20 | 95.9 |
Msa0049070 | MtrunA17_Chr5g0444161 | 33.333 | 132 | 66 | 6 | 408 | 528 | 107 | 227 | 9.63e-14 | 71.2 |
Msa0049070 | MtrunA17_Chr1g0147121 | 61.224 | 49 | 19 | 0 | 532 | 580 | 483 | 531 | 1.00e-13 | 74.7 |
Msa0049070 | MtrunA17_Chr5g0444141 | 33.333 | 123 | 78 | 3 | 408 | 528 | 142 | 262 | 1.96e-12 | 67.8 |
Msa0049070 | MtrunA17_Chr1g0210061 | 33.562 | 146 | 80 | 4 | 247 | 379 | 605 | 746 | 2.18e-12 | 70.1 |
Msa0049070 | MtrunA17_Chr8g0388231 | 43.421 | 76 | 42 | 1 | 457 | 532 | 309 | 383 | 3.65e-12 | 68.6 |
Msa0049070 | MtrunA17_Chr4g0067591 | 35.065 | 77 | 45 | 1 | 452 | 528 | 75 | 146 | 4.44e-12 | 67.0 |
Msa0049070 | MtrunA17_Chr6g0451031 | 48.889 | 45 | 23 | 0 | 484 | 528 | 67 | 111 | 4.44e-12 | 63.5 |
Msa0049070 | MtrunA17_Chr3g0128771 | 41.026 | 78 | 39 | 2 | 456 | 530 | 90 | 163 | 5.85e-12 | 64.7 |
Msa0049070 | MtrunA17_Chr7g0246761 | 32.558 | 129 | 64 | 5 | 406 | 528 | 21 | 132 | 6.34e-12 | 64.7 |
Msa0049070 | MtrunA17_Chr5g0411081 | 37.209 | 86 | 47 | 1 | 443 | 528 | 112 | 190 | 8.43e-12 | 67.0 |
Msa0049070 | MtrunA17_Chr8g0366561 | 43.243 | 74 | 41 | 1 | 457 | 530 | 114 | 186 | 1.14e-11 | 66.6 |
Msa0049070 | MtrunA17_Chr8g0369571 | 48.889 | 45 | 23 | 0 | 484 | 528 | 88 | 132 | 2.97e-11 | 62.8 |
Msa0049070 | MtrunA17_Chr5g0437361 | 37.209 | 86 | 53 | 1 | 450 | 535 | 68 | 152 | 4.55e-11 | 62.0 |
Msa0049070 | MtrunA17_Chr6g0451051 | 31.915 | 94 | 61 | 1 | 456 | 549 | 39 | 129 | 5.54e-11 | 61.2 |
Msa0049070 | MtrunA17_Chr6g0451041 | 42.188 | 64 | 37 | 0 | 486 | 549 | 18 | 81 | 7.91e-11 | 59.3 |
Msa0049070 | MtrunA17_Chr8g0383921 | 32.692 | 104 | 65 | 2 | 455 | 558 | 109 | 207 | 9.14e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0049070 | AT2G40120.1 | 72.941 | 170 | 38 | 1 | 218 | 379 | 227 | 396 | 4.45e-77 | 255 |
Msa0049070 | AT1G73460.2 | 60.577 | 208 | 71 | 3 | 183 | 379 | 786 | 993 | 1.56e-70 | 247 |
Msa0049070 | AT1G73460.1 | 60.577 | 208 | 71 | 3 | 183 | 379 | 786 | 993 | 1.56e-70 | 247 |
Msa0049070 | AT1G73450.1 | 66.857 | 175 | 50 | 1 | 213 | 379 | 802 | 976 | 2.00e-70 | 246 |
Msa0049070 | AT3G17750.1 | 64.571 | 175 | 54 | 1 | 213 | 379 | 788 | 962 | 1.46e-66 | 235 |
Msa0049070 | AT2G17730.1 | 64.667 | 150 | 53 | 0 | 379 | 528 | 89 | 238 | 3.35e-63 | 208 |
Msa0049070 | AT4G35840.1 | 64.667 | 150 | 53 | 0 | 379 | 528 | 84 | 233 | 1.81e-62 | 206 |
Msa0049070 | AT5G66070.5 | 63.333 | 150 | 50 | 1 | 379 | 528 | 74 | 218 | 7.09e-59 | 196 |
Msa0049070 | AT5G66070.1 | 63.333 | 150 | 50 | 1 | 379 | 528 | 74 | 218 | 7.09e-59 | 196 |
Msa0049070 | AT2G17730.2 | 64.336 | 143 | 51 | 0 | 379 | 521 | 89 | 231 | 3.80e-58 | 195 |
Msa0049070 | AT4G35840.2 | 53.297 | 182 | 53 | 1 | 379 | 528 | 84 | 265 | 8.72e-56 | 189 |
Msa0049070 | AT5G66070.2 | 54.598 | 174 | 50 | 2 | 379 | 528 | 74 | 242 | 2.71e-53 | 182 |
Msa0049070 | AT5G66070.4 | 58.929 | 112 | 41 | 1 | 380 | 491 | 75 | 181 | 6.33e-36 | 133 |
Msa0049070 | AT5G66070.3 | 48.175 | 137 | 42 | 2 | 379 | 491 | 74 | 205 | 1.04e-28 | 114 |
Msa0049070 | AT1G74410.1 | 36.000 | 150 | 93 | 1 | 381 | 530 | 74 | 220 | 3.18e-24 | 101 |
Msa0049070 | AT5G35980.2 | 37.569 | 181 | 94 | 5 | 228 | 393 | 92 | 268 | 4.48e-23 | 104 |
Msa0049070 | AT5G35980.3 | 37.705 | 183 | 91 | 6 | 228 | 393 | 57 | 233 | 4.61e-23 | 104 |
Msa0049070 | AT5G35980.1 | 37.705 | 183 | 91 | 6 | 228 | 393 | 92 | 268 | 4.78e-23 | 104 |
Msa0049070 | AT3G20395.1 | 33.333 | 123 | 76 | 2 | 408 | 529 | 97 | 214 | 7.74e-16 | 77.4 |
Msa0049070 | AT3G18773.1 | 39.560 | 91 | 49 | 2 | 451 | 537 | 97 | 185 | 2.69e-13 | 70.1 |
Msa0049070 | AT5G53430.1 | 52.632 | 57 | 27 | 0 | 526 | 582 | 486 | 542 | 9.76e-13 | 72.0 |
Msa0049070 | AT1G49200.1 | 41.892 | 74 | 41 | 1 | 455 | 528 | 107 | 178 | 1.30e-12 | 68.2 |
Msa0049070 | AT2G17450.1 | 37.179 | 78 | 45 | 1 | 455 | 528 | 67 | 144 | 3.78e-12 | 65.9 |
Msa0049070 | AT5G05280.1 | 41.333 | 75 | 40 | 1 | 456 | 530 | 87 | 157 | 4.55e-12 | 65.5 |
Msa0049070 | AT4G27910.1 | 52.941 | 51 | 24 | 0 | 532 | 582 | 477 | 527 | 1.30e-11 | 68.2 |
Msa0049070 | AT5G17600.1 | 40.000 | 90 | 49 | 2 | 439 | 528 | 100 | 184 | 2.77e-11 | 65.9 |
Msa0049070 | AT1G49210.1 | 40.541 | 74 | 42 | 1 | 455 | 528 | 106 | 177 | 2.88e-11 | 63.9 |
Msa0049070 | AT5G01880.1 | 41.558 | 77 | 41 | 2 | 455 | 530 | 76 | 149 | 4.68e-11 | 62.0 |
Msa0049070 | AT3G16720.1 | 36.364 | 77 | 45 | 1 | 452 | 528 | 89 | 161 | 5.35e-11 | 64.3 |
Msa0049070 | AT2G27940.1 | 39.241 | 79 | 38 | 2 | 456 | 531 | 114 | 185 | 8.04e-11 | 63.2 |
Msa0049070 | AT5G53110.1 | 35.443 | 79 | 50 | 1 | 457 | 535 | 302 | 379 | 8.20e-11 | 64.7 |
Msa0049070 | AT5G10380.1 | 37.209 | 86 | 50 | 2 | 443 | 528 | 96 | 177 | 8.37e-11 | 63.9 |
Find 119 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTAGCTACCTTAATTTAA+AGG | 0.143063 | 1_2:+2235743 | Msa0049070:CDS |
CTTTGGCATTCGAATAATTC+TGG | 0.197162 | 1_2:+2236566 | Msa0049070:CDS |
CATAAATTCAACCAAGAATA+TGG | 0.227119 | 1_2:+2236389 | Msa0049070:CDS |
GCTTAATTTCCTTTAAATTA+AGG | 0.237843 | 1_2:-2235752 | None:intergenic |
ATGCTTCACCACCATATTCT+TGG | 0.272074 | 1_2:-2236400 | None:intergenic |
TTAAGGTAGCTAATGTTTAT+AGG | 0.288253 | 1_2:-2235735 | None:intergenic |
TGCTCACTGTCTCTGCATAA+TGG | 0.302576 | 1_2:-2236962 | None:intergenic |
ACAGAAAAGCAAGCACTTAA+TGG | 0.303631 | 1_2:+2237085 | Msa0049070:CDS |
TTCCTGTTCAATTTGCCTTC+AGG | 0.305106 | 1_2:+2236841 | Msa0049070:CDS |
TTGTATGTTCTATTGATCTT+TGG | 0.316674 | 1_2:+2236549 | Msa0049070:CDS |
CATTACTCGACAGTGTTTAG+AGG | 0.319594 | 1_2:+2236448 | Msa0049070:CDS |
GGTTAAACGTATGATGATAA+TGG | 0.326660 | 1_2:-2236898 | None:intergenic |
CATTCGAATAATTCTGGAAT+AGG | 0.333342 | 1_2:+2236572 | Msa0049070:CDS |
CACTTGTGATTGAGACTATT+GGG | 0.340792 | 1_2:-2236787 | None:intergenic |
GTTAAACGTATGATGATAAT+GGG | 0.346709 | 1_2:-2236897 | None:intergenic |
TAGCTTCGATCCGGAGGTTT+GGG | 0.350467 | 1_2:-2235477 | None:intergenic |
ATGCGCAATGGCTTCTTTCT+CGG | 0.367067 | 1_2:-2235652 | None:intergenic |
TCACTTGTGATTGAGACTAT+TGG | 0.368196 | 1_2:-2236788 | None:intergenic |
ATAGCTTCGATCCGGAGGTT+TGG | 0.378202 | 1_2:-2235478 | None:intergenic |
TTCTAACAGTCTCTCCCATT+TGG | 0.383802 | 1_2:-2236868 | None:intergenic |
GCTCACTGTCTCTGCATAAT+GGG | 0.397596 | 1_2:-2236961 | None:intergenic |
GCAATCTGAACTATGCTTCA+TGG | 0.399375 | 1_2:-2235835 | None:intergenic |
AGACAGAATTATGAGGCTTC+AGG | 0.401315 | 1_2:-2236511 | None:intergenic |
ATTGCAATATTTACATAACT+TGG | 0.409904 | 1_2:+2236472 | Msa0049070:CDS |
TAAGAAGCTTGATTTCATCT+AGG | 0.411237 | 1_2:-2236244 | None:intergenic |
TGCCTTCAGGATTTCCAAAT+GGG | 0.419108 | 1_2:+2236854 | Msa0049070:CDS |
GAGTGAAGAACTCCATGTTC+CGG | 0.421411 | 1_2:+2235950 | Msa0049070:CDS |
CGATCCGGAGGTTTGGGTAG+TGG | 0.425881 | 1_2:-2235471 | None:intergenic |
TTTCAACATATCTTTGACAT+TGG | 0.427382 | 1_2:+2236725 | Msa0049070:CDS |
GTTCAGCAGGTTCTTGTAGT+GGG | 0.431132 | 1_2:+2235709 | Msa0049070:CDS |
ATCCTGAAGGCAAATTGAAC+AGG | 0.433788 | 1_2:-2236843 | None:intergenic |
GTTGCTGCAGCAGCTCACGC+CGG | 0.436700 | 1_2:+2237798 | Msa0049070:intron |
GGATGTGACAGAGGCTTACT+AGG | 0.444182 | 1_2:+2236746 | Msa0049070:CDS |
GGCTTCTTTCTCGGCACTGA+GGG | 0.450284 | 1_2:-2235643 | None:intergenic |
TCTGGTGGTGCAGGAAGTGG+TGG | 0.450710 | 1_2:-2235549 | None:intergenic |
TATTTCAACAAACATGTAAT+GGG | 0.455848 | 1_2:-2235619 | None:intergenic |
TTATGACTATTTCTACCATC+AGG | 0.460782 | 1_2:+2236316 | Msa0049070:CDS |
TCTCCATCTGTGGCAGCCTC+CGG | 0.462617 | 1_2:-2235969 | None:intergenic |
TTGCTGCAGCAGCTCACGCC+GGG | 0.462792 | 1_2:+2237799 | Msa0049070:intron |
TTGCCTTCAGGATTTCCAAA+TGG | 0.467728 | 1_2:+2236853 | Msa0049070:CDS |
CTACAAGAACCTGCTGAACC+TGG | 0.473048 | 1_2:-2235705 | None:intergenic |
GTGTCTGGTGGTGCAGGAAG+TGG | 0.476291 | 1_2:-2235552 | None:intergenic |
TTGGGTAGTGGCGGCAGAGT+CGG | 0.481200 | 1_2:-2235459 | None:intergenic |
TAAGTTTGCACGCAGAAGTT+CGG | 0.485105 | 1_2:-2236357 | None:intergenic |
AAAAGCAGTCCAGGTTCAGC+AGG | 0.497375 | 1_2:+2235696 | Msa0049070:CDS |
CACTTAGTTGTGTGCAAGTG+TGG | 0.500438 | 1_2:+2237052 | Msa0049070:CDS |
CTGTGGCAGCCTCCGGAACA+TGG | 0.502526 | 1_2:-2235962 | None:intergenic |
GGTTCAGCAGGTTCTTGTAG+TGG | 0.505056 | 1_2:+2235708 | Msa0049070:CDS |
TTGCAATATTTACATAACTT+GGG | 0.506178 | 1_2:+2236473 | Msa0049070:CDS |
AGTATGTGGCGTTTATCTCC+CGG | 0.506715 | 1_2:-2236287 | None:intergenic |
GTTCCGGAGGCTGCCACAGA+TGG | 0.508408 | 1_2:+2235966 | Msa0049070:CDS |
ATCTTCTGATAGCTTCGATC+CGG | 0.508560 | 1_2:-2235486 | None:intergenic |
ATAGAGAAGACAGAATTATG+AGG | 0.508809 | 1_2:-2236518 | None:intergenic |
CACACAACTAAGTGTAGGCT+TGG | 0.511853 | 1_2:-2237043 | None:intergenic |
GTATTTCAACAAACATGTAA+TGG | 0.512226 | 1_2:-2235620 | None:intergenic |
CCATTGCTTTCAATCCCATT+CGG | 0.516665 | 1_2:-2235906 | None:intergenic |
ACCTACCTTGCATTGACAAG+TGG | 0.517649 | 1_2:+2236918 | Msa0049070:CDS |
ACCAGACACCGAAAATAGAT+TGG | 0.519369 | 1_2:+2235566 | Msa0049070:CDS |
GGAGTTCTTCACTCAAATAT+CGG | 0.520249 | 1_2:-2235941 | None:intergenic |
ATCTGTTTCAACAACTTCGA+TGG | 0.530198 | 1_2:-2235880 | None:intergenic |
GCCATTTGTTGATCATGCCC+CGG | 0.533576 | 1_2:-2237817 | None:intergenic |
TTGAAACAGATCTACCGAAT+GGG | 0.535513 | 1_2:+2235892 | Msa0049070:CDS |
TAAAGGAAATTAAGCTGAGT+CGG | 0.536864 | 1_2:+2235760 | Msa0049070:CDS |
GGTGGTGCAGGAAGTGGTGG+AGG | 0.539230 | 1_2:-2235546 | None:intergenic |
TCGGTTCAGCTACCTTCAGT+AGG | 0.540246 | 1_2:+2236162 | Msa0049070:CDS |
TTCTGATAGCTTCGATCCGG+AGG | 0.545370 | 1_2:-2235483 | None:intergenic |
GATTGTGCTGAACACGGTCA+TGG | 0.546919 | 1_2:+2236112 | Msa0049070:CDS |
GTGCATGGAAAGAATAGGAC+TGG | 0.553009 | 1_2:+2236065 | Msa0049070:CDS |
GCCGCCACTACCCAAACCTC+CGG | 0.562559 | 1_2:+2235467 | Msa0049070:CDS |
AACTTCAGAATTATGCGCAA+TGG | 0.563755 | 1_2:-2235664 | None:intergenic |
GTATGTGGCGTTTATCTCCC+GGG | 0.564712 | 1_2:-2236286 | None:intergenic |
TTCAGCAGGTTCTTGTAGTG+GGG | 0.568017 | 1_2:+2235710 | Msa0049070:CDS |
GTACAAGTCTCCCACTCACT+AGG | 0.571667 | 1_2:-2236628 | None:intergenic |
AGTCATAAAGACGCAGTATG+TGG | 0.573921 | 1_2:-2236301 | None:intergenic |
TGCAGGAAGTGGTGGAGGCA+AGG | 0.579538 | 1_2:-2235541 | None:intergenic |
GACAAGTGGCTCATCAAGCA+TGG | 0.579677 | 1_2:+2236932 | Msa0049070:CDS |
CTCCCATTTGGAAATCCTGA+AGG | 0.579740 | 1_2:-2236856 | None:intergenic |
GAATTGTGCATGGAAAGAAT+AGG | 0.580039 | 1_2:+2236060 | Msa0049070:CDS |
TTCAGTAGGGATGCTCTCGA+TGG | 0.583985 | 1_2:+2236176 | Msa0049070:CDS |
CGGTTCAGCTACCTTCAGTA+GGG | 0.590898 | 1_2:+2236163 | Msa0049070:CDS |
TGCTGCAGCAGCTCACGCCG+GGG | 0.593738 | 1_2:+2237800 | Msa0049070:intron |
GTTCAAAGTCAGATGGGTGC+AGG | 0.598923 | 1_2:+2236683 | Msa0049070:CDS |
AAAAGCAAGCACTTAATGGA+TGG | 0.599900 | 1_2:+2237089 | Msa0049070:CDS |
CAATGAATAAATGTTCCTGA+TGG | 0.601057 | 1_2:-2236331 | None:intergenic |
GAATGCTGTTCAAAGTCAGA+TGG | 0.601226 | 1_2:+2236676 | Msa0049070:CDS |
GGGATTGAAAGCAATGGAGT+AGG | 0.601533 | 1_2:+2235912 | Msa0049070:CDS |
TTATTACTAGCCTAGTGAGT+GGG | 0.602053 | 1_2:+2236618 | Msa0049070:CDS |
TGTGAATGTTTCGATAGTAG+TGG | 0.604151 | 1_2:-2235420 | None:intergenic |
GGTGAAATTCATCACAACAT+CGG | 0.604562 | 1_2:+2235587 | Msa0049070:CDS |
TCCGGAGGTTTGGGTAGTGG+CGG | 0.605445 | 1_2:-2235468 | None:intergenic |
ATGAGCCACTTGTCAATGCA+AGG | 0.605600 | 1_2:-2236923 | None:intergenic |
GTTGAAACAGATCTACCGAA+TGG | 0.607989 | 1_2:+2235891 | Msa0049070:CDS |
CCGAATGGGATTGAAAGCAA+TGG | 0.608264 | 1_2:+2235906 | Msa0049070:CDS |
TTTGACATTGGATGTGACAG+AGG | 0.609823 | 1_2:+2236737 | Msa0049070:CDS |
TTTGAGCTAAGAATTGTGCA+TGG | 0.611242 | 1_2:+2236050 | Msa0049070:CDS |
GACTGGATTTGAAGAAAACA+AGG | 0.612197 | 1_2:+2236082 | Msa0049070:CDS |
TGGCTTCTTTCTCGGCACTG+AGG | 0.612609 | 1_2:-2235644 | None:intergenic |
ATCGAGAGCATCCCTACTGA+AGG | 0.612994 | 1_2:-2236174 | None:intergenic |
GCATAGTTCAGATTGCTACA+AGG | 0.615746 | 1_2:+2235842 | Msa0049070:CDS |
TACTATGTGACAGATTATCT+CGG | 0.618368 | 1_2:+2236143 | Msa0049070:CDS |
ATTATTATCCTCTCCATCTG+TGG | 0.619270 | 1_2:-2235979 | None:intergenic |
TGAACACGGTCATGGCTGAA+AGG | 0.620232 | 1_2:+2236120 | Msa0049070:CDS |
CTTGTCGATAAGCACGACCC+GGG | 0.628203 | 1_2:+2236269 | Msa0049070:CDS |
ACTTGCACACAACTAAGTGT+AGG | 0.640898 | 1_2:-2237048 | None:intergenic |
ACTTTGAACAGCATTCAACA+TGG | 0.643300 | 1_2:-2236669 | None:intergenic |
GGAGGCTGCCACAGATGGAG+AGG | 0.645603 | 1_2:+2235971 | Msa0049070:CDS |
AAGCTATCAGAAGATTCTCG+TGG | 0.653064 | 1_2:+2235494 | Msa0049070:CDS |
ATTATTACTAGCCTAGTGAG+TGG | 0.653310 | 1_2:+2236617 | Msa0049070:CDS |
TGAAGAACTCCATGTTCCGG+AGG | 0.656619 | 1_2:+2235953 | Msa0049070:CDS |
AATGCTGTTCAAAGTCAGAT+GGG | 0.656650 | 1_2:+2236677 | Msa0049070:CDS |
ACTTGTCGATAAGCACGACC+CGG | 0.656700 | 1_2:+2236268 | Msa0049070:CDS |
GCTTCTTTCTCGGCACTGAG+GGG | 0.663612 | 1_2:-2235642 | None:intergenic |
AAATTCAACCAAGAATATGG+TGG | 0.668921 | 1_2:+2236392 | Msa0049070:CDS |
TTAAACGTATGATGATAATG+GGG | 0.679275 | 1_2:-2236896 | None:intergenic |
AGACTTGTACGTGAAAGAGT+TGG | 0.691935 | 1_2:+2236641 | Msa0049070:CDS |
GCCACTTGTCAATGCAAGGT+AGG | 0.694066 | 1_2:-2236919 | None:intergenic |
AATGGATGGCAACAACACAA+AGG | 0.695166 | 1_2:+2237103 | Msa0049070:CDS |
AGTGCTGATTGTGCTGAACA+CGG | 0.717577 | 1_2:+2236106 | Msa0049070:CDS |
AGAGTCGGAGTGAAAACACG+TGG | 0.744559 | 1_2:-2235444 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTCAACAAACATGTAAT+GGG | - | chr1_2:2235622-2235641 | None:intergenic | 20.0% |
!! | GCTTAATTTCCTTTAAATTA+AGG | - | chr1_2:2235755-2235774 | None:intergenic | 20.0% |
!! | GAAGATTATTAAAAATGACA+AGG | + | chr1_2:2236205-2236224 | Msa0049070:CDS | 20.0% |
!! | ATTGCAATATTTACATAACT+TGG | + | chr1_2:2236472-2236491 | Msa0049070:CDS | 20.0% |
!! | TTGCAATATTTACATAACTT+GGG | + | chr1_2:2236473-2236492 | Msa0049070:CDS | 20.0% |
!!! | AAGATTAATGTTTTTTGCAA+TGG | + | chr1_2:2237001-2237020 | Msa0049070:CDS | 20.0% |
!! | TCTAGAAAATTACTAAGATT+TGG | - | chr1_2:2237449-2237468 | None:intergenic | 20.0% |
!!! | TTTTATTTTATTTCAACCCA+TGG | + | chr1_2:2237488-2237507 | Msa0049070:intron | 20.0% |
!!! | TTTATTTTATTTCAACCCAT+GGG | + | chr1_2:2237489-2237508 | Msa0049070:intron | 20.0% |
!! | TATTTCAACAAACATGTAAT+GGG | - | chr1_2:2235622-2235641 | None:intergenic | 20.0% |
!! | GCTTAATTTCCTTTAAATTA+AGG | - | chr1_2:2235755-2235774 | None:intergenic | 20.0% |
!! | GAAGATTATTAAAAATGACA+AGG | + | chr1_2:2236205-2236224 | Msa0049070:CDS | 20.0% |
!! | ATTGCAATATTTACATAACT+TGG | + | chr1_2:2236472-2236491 | Msa0049070:CDS | 20.0% |
!! | TTGCAATATTTACATAACTT+GGG | + | chr1_2:2236473-2236492 | Msa0049070:CDS | 20.0% |
!!! | AAGATTAATGTTTTTTGCAA+TGG | + | chr1_2:2237001-2237020 | Msa0049070:CDS | 20.0% |
!! | TCTAGAAAATTACTAAGATT+TGG | - | chr1_2:2237449-2237468 | None:intergenic | 20.0% |
!!! | TTTTATTTTATTTCAACCCA+TGG | + | chr1_2:2237488-2237507 | Msa0049070:intron | 20.0% |
!!! | TTTATTTTATTTCAACCCAT+GGG | + | chr1_2:2237489-2237508 | Msa0049070:intron | 20.0% |
!! | GAATTTCACCAATCTATTTT+CGG | - | chr1_2:2235577-2235596 | None:intergenic | 25.0% |
! | GTATTTCAACAAACATGTAA+TGG | - | chr1_2:2235623-2235642 | None:intergenic | 25.0% |
! | TTAAGGTAGCTAATGTTTAT+AGG | - | chr1_2:2235738-2235757 | None:intergenic | 25.0% |
! | CATTAGCTACCTTAATTTAA+AGG | + | chr1_2:2235743-2235762 | Msa0049070:CDS | 25.0% |
! | CATAAATTCAACCAAGAATA+TGG | + | chr1_2:2236389-2236408 | Msa0049070:CDS | 25.0% |
! | TTGTATGTTCTATTGATCTT+TGG | + | chr1_2:2236549-2236568 | Msa0049070:CDS | 25.0% |
! | TTTCAACATATCTTTGACAT+TGG | + | chr1_2:2236725-2236744 | Msa0049070:CDS | 25.0% |
!! | TTAAACGTATGATGATAATG+GGG | - | chr1_2:2236899-2236918 | None:intergenic | 25.0% |
! | GTTAAACGTATGATGATAAT+GGG | - | chr1_2:2236900-2236919 | None:intergenic | 25.0% |
!! | TGTTTTCCAATCTCTTAATT+TGG | - | chr1_2:2237131-2237150 | None:intergenic | 25.0% |
! | ATGCTACTATATTTCTTCAA+TGG | + | chr1_2:2237215-2237234 | Msa0049070:intron | 25.0% |
! | TGCTACTATATTTCTTCAAT+GGG | + | chr1_2:2237216-2237235 | Msa0049070:intron | 25.0% |
!!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr1_2:2237679-2237698 | Msa0049070:intron | 25.0% |
!! | GAATTTCACCAATCTATTTT+CGG | - | chr1_2:2235577-2235596 | None:intergenic | 25.0% |
! | GTATTTCAACAAACATGTAA+TGG | - | chr1_2:2235623-2235642 | None:intergenic | 25.0% |
! | TTAAGGTAGCTAATGTTTAT+AGG | - | chr1_2:2235738-2235757 | None:intergenic | 25.0% |
! | CATTAGCTACCTTAATTTAA+AGG | + | chr1_2:2235743-2235762 | Msa0049070:CDS | 25.0% |
! | CATAAATTCAACCAAGAATA+TGG | + | chr1_2:2236389-2236408 | Msa0049070:CDS | 25.0% |
! | TTGTATGTTCTATTGATCTT+TGG | + | chr1_2:2236549-2236568 | Msa0049070:CDS | 25.0% |
! | TTTCAACATATCTTTGACAT+TGG | + | chr1_2:2236725-2236744 | Msa0049070:CDS | 25.0% |
!! | TTAAACGTATGATGATAATG+GGG | - | chr1_2:2236899-2236918 | None:intergenic | 25.0% |
! | GTTAAACGTATGATGATAAT+GGG | - | chr1_2:2236900-2236919 | None:intergenic | 25.0% |
!! | TGTTTTCCAATCTCTTAATT+TGG | - | chr1_2:2237131-2237150 | None:intergenic | 25.0% |
! | ATGCTACTATATTTCTTCAA+TGG | + | chr1_2:2237215-2237234 | Msa0049070:intron | 25.0% |
! | TGCTACTATATTTCTTCAAT+GGG | + | chr1_2:2237216-2237235 | Msa0049070:intron | 25.0% |
!!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr1_2:2237679-2237698 | Msa0049070:intron | 25.0% |
TAAAGGAAATTAAGCTGAGT+CGG | + | chr1_2:2235760-2235779 | Msa0049070:CDS | 30.0% | |
! | TCGGAATGATTTTCATATGA+AGG | + | chr1_2:2235779-2235798 | Msa0049070:CDS | 30.0% |
! | CGGAATGATTTTCATATGAA+GGG | + | chr1_2:2235780-2235799 | Msa0049070:CDS | 30.0% |
!! | CATCTTGACTGTATTTTAAG+AGG | - | chr1_2:2236016-2236035 | None:intergenic | 30.0% |
TACTATGTGACAGATTATCT+CGG | + | chr1_2:2236143-2236162 | Msa0049070:CDS | 30.0% | |
TAAGAAGCTTGATTTCATCT+AGG | - | chr1_2:2236247-2236266 | None:intergenic | 30.0% | |
!! | TTATGACTATTTCTACCATC+AGG | + | chr1_2:2236316-2236335 | Msa0049070:CDS | 30.0% |
CAATGAATAAATGTTCCTGA+TGG | - | chr1_2:2236334-2236353 | None:intergenic | 30.0% | |
AAATTCAACCAAGAATATGG+TGG | + | chr1_2:2236392-2236411 | Msa0049070:CDS | 30.0% | |
ATAGAGAAGACAGAATTATG+AGG | - | chr1_2:2236521-2236540 | None:intergenic | 30.0% | |
!! | CATTCGAATAATTCTGGAAT+AGG | + | chr1_2:2236572-2236591 | Msa0049070:CDS | 30.0% |
GGTTAAACGTATGATGATAA+TGG | - | chr1_2:2236901-2236920 | None:intergenic | 30.0% | |
AAGGTTCCAAATTAAGAGAT+TGG | + | chr1_2:2237122-2237141 | Msa0049070:intron | 30.0% | |
GTATTATTGTGAAAGACTCT+AGG | + | chr1_2:2237152-2237171 | Msa0049070:intron | 30.0% | |
TTTATCAAAATGAGAACTCG+AGG | + | chr1_2:2237350-2237369 | Msa0049070:intron | 30.0% | |
GAAAGAAATAACAAACCCAT+GGG | - | chr1_2:2237507-2237526 | None:intergenic | 30.0% | |
TGAAAGAAATAACAAACCCA+TGG | - | chr1_2:2237508-2237527 | None:intergenic | 30.0% | |
! | AATCAAAAAGTGTACCTCTT+AGG | - | chr1_2:2237554-2237573 | None:intergenic | 30.0% |
CGACAAACCTATCAAAATAA+GGG | - | chr1_2:2237625-2237644 | None:intergenic | 30.0% | |
TAAAGGAAATTAAGCTGAGT+CGG | + | chr1_2:2235760-2235779 | Msa0049070:CDS | 30.0% | |
! | TCGGAATGATTTTCATATGA+AGG | + | chr1_2:2235779-2235798 | Msa0049070:CDS | 30.0% |
! | CGGAATGATTTTCATATGAA+GGG | + | chr1_2:2235780-2235799 | Msa0049070:CDS | 30.0% |
!! | CATCTTGACTGTATTTTAAG+AGG | - | chr1_2:2236016-2236035 | None:intergenic | 30.0% |
TACTATGTGACAGATTATCT+CGG | + | chr1_2:2236143-2236162 | Msa0049070:CDS | 30.0% | |
TAAGAAGCTTGATTTCATCT+AGG | - | chr1_2:2236247-2236266 | None:intergenic | 30.0% | |
!! | TTATGACTATTTCTACCATC+AGG | + | chr1_2:2236316-2236335 | Msa0049070:CDS | 30.0% |
CAATGAATAAATGTTCCTGA+TGG | - | chr1_2:2236334-2236353 | None:intergenic | 30.0% | |
AAATTCAACCAAGAATATGG+TGG | + | chr1_2:2236392-2236411 | Msa0049070:CDS | 30.0% | |
ATAGAGAAGACAGAATTATG+AGG | - | chr1_2:2236521-2236540 | None:intergenic | 30.0% | |
!! | CATTCGAATAATTCTGGAAT+AGG | + | chr1_2:2236572-2236591 | Msa0049070:CDS | 30.0% |
GGTTAAACGTATGATGATAA+TGG | - | chr1_2:2236901-2236920 | None:intergenic | 30.0% | |
AAGGTTCCAAATTAAGAGAT+TGG | + | chr1_2:2237122-2237141 | Msa0049070:intron | 30.0% | |
GTATTATTGTGAAAGACTCT+AGG | + | chr1_2:2237152-2237171 | Msa0049070:intron | 30.0% | |
TTTATCAAAATGAGAACTCG+AGG | + | chr1_2:2237350-2237369 | Msa0049070:intron | 30.0% | |
GAAAGAAATAACAAACCCAT+GGG | - | chr1_2:2237507-2237526 | None:intergenic | 30.0% | |
TGAAAGAAATAACAAACCCA+TGG | - | chr1_2:2237508-2237527 | None:intergenic | 30.0% | |
! | AATCAAAAAGTGTACCTCTT+AGG | - | chr1_2:2237554-2237573 | None:intergenic | 30.0% |
CGACAAACCTATCAAAATAA+GGG | - | chr1_2:2237625-2237644 | None:intergenic | 30.0% | |
TGTGAATGTTTCGATAGTAG+TGG | - | chr1_2:2235423-2235442 | None:intergenic | 35.0% | |
GGTGAAATTCATCACAACAT+CGG | + | chr1_2:2235587-2235606 | Msa0049070:CDS | 35.0% | |
AACTTCAGAATTATGCGCAA+TGG | - | chr1_2:2235667-2235686 | None:intergenic | 35.0% | |
ATCTGTTTCAACAACTTCGA+TGG | - | chr1_2:2235883-2235902 | None:intergenic | 35.0% | |
TTGAAACAGATCTACCGAAT+GGG | + | chr1_2:2235892-2235911 | Msa0049070:CDS | 35.0% | |
GGAGTTCTTCACTCAAATAT+CGG | - | chr1_2:2235944-2235963 | None:intergenic | 35.0% | |
ATTATTATCCTCTCCATCTG+TGG | - | chr1_2:2235982-2236001 | None:intergenic | 35.0% | |
TTTGAGCTAAGAATTGTGCA+TGG | + | chr1_2:2236050-2236069 | Msa0049070:CDS | 35.0% | |
GAATTGTGCATGGAAAGAAT+AGG | + | chr1_2:2236060-2236079 | Msa0049070:CDS | 35.0% | |
GACTGGATTTGAAGAAAACA+AGG | + | chr1_2:2236082-2236101 | Msa0049070:CDS | 35.0% | |
CTTTGGCATTCGAATAATTC+TGG | + | chr1_2:2236566-2236585 | Msa0049070:CDS | 35.0% | |
! | ATTATTACTAGCCTAGTGAG+TGG | + | chr1_2:2236617-2236636 | Msa0049070:CDS | 35.0% |
! | TTATTACTAGCCTAGTGAGT+GGG | + | chr1_2:2236618-2236637 | Msa0049070:CDS | 35.0% |
ACTTTGAACAGCATTCAACA+TGG | - | chr1_2:2236672-2236691 | None:intergenic | 35.0% | |
AATGCTGTTCAAAGTCAGAT+GGG | + | chr1_2:2236677-2236696 | Msa0049070:CDS | 35.0% | |
CACTTGTGATTGAGACTATT+GGG | - | chr1_2:2236790-2236809 | None:intergenic | 35.0% | |
TCACTTGTGATTGAGACTAT+TGG | - | chr1_2:2236791-2236810 | None:intergenic | 35.0% | |
!! | GACAACAATTTTGATGCTTG+TGG | + | chr1_2:2236809-2236828 | Msa0049070:CDS | 35.0% |
ACAGAAAAGCAAGCACTTAA+TGG | + | chr1_2:2237085-2237104 | Msa0049070:CDS | 35.0% | |
AAAAGCAAGCACTTAATGGA+TGG | + | chr1_2:2237089-2237108 | Msa0049070:CDS | 35.0% | |
TAGAACTTATGTAGCCTAAG+AGG | + | chr1_2:2237537-2237556 | Msa0049070:intron | 35.0% | |
TCGAGAATTTCTCTCAATTC+TGG | + | chr1_2:2237586-2237605 | Msa0049070:intron | 35.0% | |
AGAATTTCTCTCAATTCTGG+TGG | + | chr1_2:2237589-2237608 | Msa0049070:intron | 35.0% | |
CCTATCAAAATAAGGGTTTC+CGG | - | chr1_2:2237618-2237637 | None:intergenic | 35.0% | |
GCGACAAACCTATCAAAATA+AGG | - | chr1_2:2237626-2237645 | None:intergenic | 35.0% | |
GCGACAAACTTGTGAAAATA+GGG | - | chr1_2:2237655-2237674 | None:intergenic | 35.0% | |
AGCGACAAACTTGTGAAAAT+AGG | - | chr1_2:2237656-2237675 | None:intergenic | 35.0% | |
GGGATGCAATACATAAAGTA+TGG | + | chr1_2:2237744-2237763 | Msa0049070:intron | 35.0% | |
TGTGAATGTTTCGATAGTAG+TGG | - | chr1_2:2235423-2235442 | None:intergenic | 35.0% | |
GGTGAAATTCATCACAACAT+CGG | + | chr1_2:2235587-2235606 | Msa0049070:CDS | 35.0% | |
AACTTCAGAATTATGCGCAA+TGG | - | chr1_2:2235667-2235686 | None:intergenic | 35.0% | |
ATCTGTTTCAACAACTTCGA+TGG | - | chr1_2:2235883-2235902 | None:intergenic | 35.0% | |
TTGAAACAGATCTACCGAAT+GGG | + | chr1_2:2235892-2235911 | Msa0049070:CDS | 35.0% | |
GGAGTTCTTCACTCAAATAT+CGG | - | chr1_2:2235944-2235963 | None:intergenic | 35.0% | |
ATTATTATCCTCTCCATCTG+TGG | - | chr1_2:2235982-2236001 | None:intergenic | 35.0% | |
TTTGAGCTAAGAATTGTGCA+TGG | + | chr1_2:2236050-2236069 | Msa0049070:CDS | 35.0% | |
GAATTGTGCATGGAAAGAAT+AGG | + | chr1_2:2236060-2236079 | Msa0049070:CDS | 35.0% | |
GACTGGATTTGAAGAAAACA+AGG | + | chr1_2:2236082-2236101 | Msa0049070:CDS | 35.0% | |
CTTTGGCATTCGAATAATTC+TGG | + | chr1_2:2236566-2236585 | Msa0049070:CDS | 35.0% | |
! | ATTATTACTAGCCTAGTGAG+TGG | + | chr1_2:2236617-2236636 | Msa0049070:CDS | 35.0% |
! | TTATTACTAGCCTAGTGAGT+GGG | + | chr1_2:2236618-2236637 | Msa0049070:CDS | 35.0% |
ACTTTGAACAGCATTCAACA+TGG | - | chr1_2:2236672-2236691 | None:intergenic | 35.0% | |
AATGCTGTTCAAAGTCAGAT+GGG | + | chr1_2:2236677-2236696 | Msa0049070:CDS | 35.0% | |
CACTTGTGATTGAGACTATT+GGG | - | chr1_2:2236790-2236809 | None:intergenic | 35.0% | |
TCACTTGTGATTGAGACTAT+TGG | - | chr1_2:2236791-2236810 | None:intergenic | 35.0% | |
!! | GACAACAATTTTGATGCTTG+TGG | + | chr1_2:2236809-2236828 | Msa0049070:CDS | 35.0% |
ACAGAAAAGCAAGCACTTAA+TGG | + | chr1_2:2237085-2237104 | Msa0049070:CDS | 35.0% | |
AAAAGCAAGCACTTAATGGA+TGG | + | chr1_2:2237089-2237108 | Msa0049070:CDS | 35.0% | |
TAGAACTTATGTAGCCTAAG+AGG | + | chr1_2:2237537-2237556 | Msa0049070:intron | 35.0% | |
TCGAGAATTTCTCTCAATTC+TGG | + | chr1_2:2237586-2237605 | Msa0049070:intron | 35.0% | |
AGAATTTCTCTCAATTCTGG+TGG | + | chr1_2:2237589-2237608 | Msa0049070:intron | 35.0% | |
CCTATCAAAATAAGGGTTTC+CGG | - | chr1_2:2237618-2237637 | None:intergenic | 35.0% | |
GCGACAAACCTATCAAAATA+AGG | - | chr1_2:2237626-2237645 | None:intergenic | 35.0% | |
GCGACAAACTTGTGAAAATA+GGG | - | chr1_2:2237655-2237674 | None:intergenic | 35.0% | |
AGCGACAAACTTGTGAAAAT+AGG | - | chr1_2:2237656-2237675 | None:intergenic | 35.0% | |
GGGATGCAATACATAAAGTA+TGG | + | chr1_2:2237744-2237763 | Msa0049070:intron | 35.0% | |
ATCTTCTGATAGCTTCGATC+CGG | - | chr1_2:2235489-2235508 | None:intergenic | 40.0% | |
AAGCTATCAGAAGATTCTCG+TGG | + | chr1_2:2235494-2235513 | Msa0049070:CDS | 40.0% | |
!!! | AATCTATTTTCGGTGTCTGG+TGG | - | chr1_2:2235567-2235586 | None:intergenic | 40.0% |
ACCAGACACCGAAAATAGAT+TGG | + | chr1_2:2235566-2235585 | Msa0049070:CDS | 40.0% | |
!!! | ACCAATCTATTTTCGGTGTC+TGG | - | chr1_2:2235570-2235589 | None:intergenic | 40.0% |
GCAATCTGAACTATGCTTCA+TGG | - | chr1_2:2235838-2235857 | None:intergenic | 40.0% | |
GCATAGTTCAGATTGCTACA+AGG | + | chr1_2:2235842-2235861 | Msa0049070:CDS | 40.0% | |
GTTGAAACAGATCTACCGAA+TGG | + | chr1_2:2235891-2235910 | Msa0049070:CDS | 40.0% | |
CCATTGCTTTCAATCCCATT+CGG | - | chr1_2:2235909-2235928 | None:intergenic | 40.0% | |
AGTCATAAAGACGCAGTATG+TGG | - | chr1_2:2236304-2236323 | None:intergenic | 40.0% | |
TAAGTTTGCACGCAGAAGTT+CGG | - | chr1_2:2236360-2236379 | None:intergenic | 40.0% | |
ATGCTTCACCACCATATTCT+TGG | - | chr1_2:2236403-2236422 | None:intergenic | 40.0% | |
CATTACTCGACAGTGTTTAG+AGG | + | chr1_2:2236448-2236467 | Msa0049070:CDS | 40.0% | |
AGACAGAATTATGAGGCTTC+AGG | - | chr1_2:2236514-2236533 | None:intergenic | 40.0% | |
AGACTTGTACGTGAAAGAGT+TGG | + | chr1_2:2236641-2236660 | Msa0049070:CDS | 40.0% | |
GAATGCTGTTCAAAGTCAGA+TGG | + | chr1_2:2236676-2236695 | Msa0049070:CDS | 40.0% | |
TTTGACATTGGATGTGACAG+AGG | + | chr1_2:2236737-2236756 | Msa0049070:CDS | 40.0% | |
TTCCTGTTCAATTTGCCTTC+AGG | + | chr1_2:2236841-2236860 | Msa0049070:CDS | 40.0% | |
ATCCTGAAGGCAAATTGAAC+AGG | - | chr1_2:2236846-2236865 | None:intergenic | 40.0% | |
TTGCCTTCAGGATTTCCAAA+TGG | + | chr1_2:2236853-2236872 | Msa0049070:CDS | 40.0% | |
TGCCTTCAGGATTTCCAAAT+GGG | + | chr1_2:2236854-2236873 | Msa0049070:CDS | 40.0% | |
TTCTAACAGTCTCTCCCATT+TGG | - | chr1_2:2236871-2236890 | None:intergenic | 40.0% | |
ACTTGCACACAACTAAGTGT+AGG | - | chr1_2:2237051-2237070 | None:intergenic | 40.0% | |
! | TGTGCAAGTGTGGTTTTTGT+GGG | + | chr1_2:2237062-2237081 | Msa0049070:CDS | 40.0% |
AATGGATGGCAACAACACAA+AGG | + | chr1_2:2237103-2237122 | Msa0049070:CDS | 40.0% | |
TTCACCATCCATTGTTCTAG+AGG | - | chr1_2:2237181-2237200 | None:intergenic | 40.0% | |
! | TCTAGAACAATGGATGGTGA+AGG | + | chr1_2:2237180-2237199 | Msa0049070:intron | 40.0% |
ATCCTCGCATTTCACTCAAT+GGG | + | chr1_2:2237273-2237292 | Msa0049070:intron | 40.0% | |
ATTGGAGGAGTAAACATGCA+TGG | + | chr1_2:2237320-2237339 | Msa0049070:intron | 40.0% | |
TTGGAGGAGTAAACATGCAT+GGG | + | chr1_2:2237321-2237340 | Msa0049070:intron | 40.0% | |
!!! | CCGGAAACCCTTATTTTGAT+AGG | + | chr1_2:2237615-2237634 | Msa0049070:intron | 40.0% |
ATCTTCTGATAGCTTCGATC+CGG | - | chr1_2:2235489-2235508 | None:intergenic | 40.0% | |
AAGCTATCAGAAGATTCTCG+TGG | + | chr1_2:2235494-2235513 | Msa0049070:CDS | 40.0% | |
!!! | AATCTATTTTCGGTGTCTGG+TGG | - | chr1_2:2235567-2235586 | None:intergenic | 40.0% |
ACCAGACACCGAAAATAGAT+TGG | + | chr1_2:2235566-2235585 | Msa0049070:CDS | 40.0% | |
!!! | ACCAATCTATTTTCGGTGTC+TGG | - | chr1_2:2235570-2235589 | None:intergenic | 40.0% |
GCAATCTGAACTATGCTTCA+TGG | - | chr1_2:2235838-2235857 | None:intergenic | 40.0% | |
GCATAGTTCAGATTGCTACA+AGG | + | chr1_2:2235842-2235861 | Msa0049070:CDS | 40.0% | |
GTTGAAACAGATCTACCGAA+TGG | + | chr1_2:2235891-2235910 | Msa0049070:CDS | 40.0% | |
CCATTGCTTTCAATCCCATT+CGG | - | chr1_2:2235909-2235928 | None:intergenic | 40.0% | |
AGTCATAAAGACGCAGTATG+TGG | - | chr1_2:2236304-2236323 | None:intergenic | 40.0% | |
TAAGTTTGCACGCAGAAGTT+CGG | - | chr1_2:2236360-2236379 | None:intergenic | 40.0% | |
ATGCTTCACCACCATATTCT+TGG | - | chr1_2:2236403-2236422 | None:intergenic | 40.0% | |
CATTACTCGACAGTGTTTAG+AGG | + | chr1_2:2236448-2236467 | Msa0049070:CDS | 40.0% | |
AGACAGAATTATGAGGCTTC+AGG | - | chr1_2:2236514-2236533 | None:intergenic | 40.0% | |
AGACTTGTACGTGAAAGAGT+TGG | + | chr1_2:2236641-2236660 | Msa0049070:CDS | 40.0% | |
GAATGCTGTTCAAAGTCAGA+TGG | + | chr1_2:2236676-2236695 | Msa0049070:CDS | 40.0% | |
TTTGACATTGGATGTGACAG+AGG | + | chr1_2:2236737-2236756 | Msa0049070:CDS | 40.0% | |
TTCCTGTTCAATTTGCCTTC+AGG | + | chr1_2:2236841-2236860 | Msa0049070:CDS | 40.0% | |
ATCCTGAAGGCAAATTGAAC+AGG | - | chr1_2:2236846-2236865 | None:intergenic | 40.0% | |
TTGCCTTCAGGATTTCCAAA+TGG | + | chr1_2:2236853-2236872 | Msa0049070:CDS | 40.0% | |
TGCCTTCAGGATTTCCAAAT+GGG | + | chr1_2:2236854-2236873 | Msa0049070:CDS | 40.0% | |
TTCTAACAGTCTCTCCCATT+TGG | - | chr1_2:2236871-2236890 | None:intergenic | 40.0% | |
ACTTGCACACAACTAAGTGT+AGG | - | chr1_2:2237051-2237070 | None:intergenic | 40.0% | |
! | TGTGCAAGTGTGGTTTTTGT+GGG | + | chr1_2:2237062-2237081 | Msa0049070:CDS | 40.0% |
AATGGATGGCAACAACACAA+AGG | + | chr1_2:2237103-2237122 | Msa0049070:CDS | 40.0% | |
TTCACCATCCATTGTTCTAG+AGG | - | chr1_2:2237181-2237200 | None:intergenic | 40.0% | |
! | TCTAGAACAATGGATGGTGA+AGG | + | chr1_2:2237180-2237199 | Msa0049070:intron | 40.0% |
ATCCTCGCATTTCACTCAAT+GGG | + | chr1_2:2237273-2237292 | Msa0049070:intron | 40.0% | |
ATTGGAGGAGTAAACATGCA+TGG | + | chr1_2:2237320-2237339 | Msa0049070:intron | 40.0% | |
TTGGAGGAGTAAACATGCAT+GGG | + | chr1_2:2237321-2237340 | Msa0049070:intron | 40.0% | |
!!! | CCGGAAACCCTTATTTTGAT+AGG | + | chr1_2:2237615-2237634 | Msa0049070:intron | 40.0% |
ATGCGCAATGGCTTCTTTCT+CGG | - | chr1_2:2235655-2235674 | None:intergenic | 45.0% | |
!! | CCTGGACTGCTTTTGCAAAA+TGG | - | chr1_2:2235690-2235709 | None:intergenic | 45.0% |
! | CCATTTTGCAAAAGCAGTCC+AGG | + | chr1_2:2235687-2235706 | Msa0049070:CDS | 45.0% |
GTTCAGCAGGTTCTTGTAGT+GGG | + | chr1_2:2235709-2235728 | Msa0049070:CDS | 45.0% | |
TTCAGCAGGTTCTTGTAGTG+GGG | + | chr1_2:2235710-2235729 | Msa0049070:CDS | 45.0% | |
CCGAATGGGATTGAAAGCAA+TGG | + | chr1_2:2235906-2235925 | Msa0049070:CDS | 45.0% | |
GGGATTGAAAGCAATGGAGT+AGG | + | chr1_2:2235912-2235931 | Msa0049070:CDS | 45.0% | |
GAGTGAAGAACTCCATGTTC+CGG | + | chr1_2:2235950-2235969 | Msa0049070:CDS | 45.0% | |
GTGCATGGAAAGAATAGGAC+TGG | + | chr1_2:2236065-2236084 | Msa0049070:CDS | 45.0% | |
!! | AGTGCTGATTGTGCTGAACA+CGG | + | chr1_2:2236106-2236125 | Msa0049070:CDS | 45.0% |
AGTATGTGGCGTTTATCTCC+CGG | - | chr1_2:2236290-2236309 | None:intergenic | 45.0% | |
CTCCCATTTGGAAATCCTGA+AGG | - | chr1_2:2236859-2236878 | None:intergenic | 45.0% | |
! | ACCTACCTTGCATTGACAAG+TGG | + | chr1_2:2236918-2236937 | Msa0049070:CDS | 45.0% |
ATGAGCCACTTGTCAATGCA+AGG | - | chr1_2:2236926-2236945 | None:intergenic | 45.0% | |
GCTCACTGTCTCTGCATAAT+GGG | - | chr1_2:2236964-2236983 | None:intergenic | 45.0% | |
TGCTCACTGTCTCTGCATAA+TGG | - | chr1_2:2236965-2236984 | None:intergenic | 45.0% | |
CACACAACTAAGTGTAGGCT+TGG | - | chr1_2:2237046-2237065 | None:intergenic | 45.0% | |
CACTTAGTTGTGTGCAAGTG+TGG | + | chr1_2:2237052-2237071 | Msa0049070:CDS | 45.0% | |
! | GTGTGCAAGTGTGGTTTTTG+TGG | + | chr1_2:2237061-2237080 | Msa0049070:CDS | 45.0% |
!! | CTAGGCTACCTCTAGAACAA+TGG | + | chr1_2:2237170-2237189 | Msa0049070:intron | 45.0% |
!! | GCTACCTCTAGAACAATGGA+TGG | + | chr1_2:2237174-2237193 | Msa0049070:intron | 45.0% |
CATCCTCGCATTTCACTCAA+TGG | + | chr1_2:2237272-2237291 | Msa0049070:intron | 45.0% | |
ATCCCATTGAGTGAAATGCG+AGG | - | chr1_2:2237278-2237297 | None:intergenic | 45.0% | |
CATTTCACTCAATGGGATCC+AGG | + | chr1_2:2237280-2237299 | Msa0049070:intron | 45.0% | |
!! | CTCTCAATTCTGGTGGATTC+CGG | + | chr1_2:2237596-2237615 | Msa0049070:intron | 45.0% |
CTTCCGTACTGCGTCAATAT+GGG | + | chr1_2:2237724-2237743 | Msa0049070:intron | 45.0% | |
CATCCCATATTGACGCAGTA+CGG | - | chr1_2:2237730-2237749 | None:intergenic | 45.0% | |
ATGCGCAATGGCTTCTTTCT+CGG | - | chr1_2:2235655-2235674 | None:intergenic | 45.0% | |
!! | CCTGGACTGCTTTTGCAAAA+TGG | - | chr1_2:2235690-2235709 | None:intergenic | 45.0% |
! | CCATTTTGCAAAAGCAGTCC+AGG | + | chr1_2:2235687-2235706 | Msa0049070:CDS | 45.0% |
GTTCAGCAGGTTCTTGTAGT+GGG | + | chr1_2:2235709-2235728 | Msa0049070:CDS | 45.0% | |
TTCAGCAGGTTCTTGTAGTG+GGG | + | chr1_2:2235710-2235729 | Msa0049070:CDS | 45.0% | |
CCGAATGGGATTGAAAGCAA+TGG | + | chr1_2:2235906-2235925 | Msa0049070:CDS | 45.0% | |
GGGATTGAAAGCAATGGAGT+AGG | + | chr1_2:2235912-2235931 | Msa0049070:CDS | 45.0% | |
GAGTGAAGAACTCCATGTTC+CGG | + | chr1_2:2235950-2235969 | Msa0049070:CDS | 45.0% | |
GTGCATGGAAAGAATAGGAC+TGG | + | chr1_2:2236065-2236084 | Msa0049070:CDS | 45.0% | |
!! | AGTGCTGATTGTGCTGAACA+CGG | + | chr1_2:2236106-2236125 | Msa0049070:CDS | 45.0% |
AGTATGTGGCGTTTATCTCC+CGG | - | chr1_2:2236290-2236309 | None:intergenic | 45.0% | |
CTCCCATTTGGAAATCCTGA+AGG | - | chr1_2:2236859-2236878 | None:intergenic | 45.0% | |
! | ACCTACCTTGCATTGACAAG+TGG | + | chr1_2:2236918-2236937 | Msa0049070:CDS | 45.0% |
ATGAGCCACTTGTCAATGCA+AGG | - | chr1_2:2236926-2236945 | None:intergenic | 45.0% | |
GCTCACTGTCTCTGCATAAT+GGG | - | chr1_2:2236964-2236983 | None:intergenic | 45.0% | |
TGCTCACTGTCTCTGCATAA+TGG | - | chr1_2:2236965-2236984 | None:intergenic | 45.0% | |
CACACAACTAAGTGTAGGCT+TGG | - | chr1_2:2237046-2237065 | None:intergenic | 45.0% | |
CACTTAGTTGTGTGCAAGTG+TGG | + | chr1_2:2237052-2237071 | Msa0049070:CDS | 45.0% | |
! | GTGTGCAAGTGTGGTTTTTG+TGG | + | chr1_2:2237061-2237080 | Msa0049070:CDS | 45.0% |
!! | CTAGGCTACCTCTAGAACAA+TGG | + | chr1_2:2237170-2237189 | Msa0049070:intron | 45.0% |
!! | GCTACCTCTAGAACAATGGA+TGG | + | chr1_2:2237174-2237193 | Msa0049070:intron | 45.0% |
CATCCTCGCATTTCACTCAA+TGG | + | chr1_2:2237272-2237291 | Msa0049070:intron | 45.0% | |
ATCCCATTGAGTGAAATGCG+AGG | - | chr1_2:2237278-2237297 | None:intergenic | 45.0% | |
CATTTCACTCAATGGGATCC+AGG | + | chr1_2:2237280-2237299 | Msa0049070:intron | 45.0% | |
!! | CTCTCAATTCTGGTGGATTC+CGG | + | chr1_2:2237596-2237615 | Msa0049070:intron | 45.0% |
CTTCCGTACTGCGTCAATAT+GGG | + | chr1_2:2237724-2237743 | Msa0049070:intron | 45.0% | |
CATCCCATATTGACGCAGTA+CGG | - | chr1_2:2237730-2237749 | None:intergenic | 45.0% | |
AGAGTCGGAGTGAAAACACG+TGG | - | chr1_2:2235447-2235466 | None:intergenic | 50.0% | |
TAGCTTCGATCCGGAGGTTT+GGG | - | chr1_2:2235480-2235499 | None:intergenic | 50.0% | |
ATAGCTTCGATCCGGAGGTT+TGG | - | chr1_2:2235481-2235500 | None:intergenic | 50.0% | |
TTCTGATAGCTTCGATCCGG+AGG | - | chr1_2:2235486-2235505 | None:intergenic | 50.0% | |
AAAAGCAGTCCAGGTTCAGC+AGG | + | chr1_2:2235696-2235715 | Msa0049070:CDS | 50.0% | |
CTACAAGAACCTGCTGAACC+TGG | - | chr1_2:2235708-2235727 | None:intergenic | 50.0% | |
GGTTCAGCAGGTTCTTGTAG+TGG | + | chr1_2:2235708-2235727 | Msa0049070:CDS | 50.0% | |
TGAAGAACTCCATGTTCCGG+AGG | + | chr1_2:2235953-2235972 | Msa0049070:CDS | 50.0% | |
GATTGTGCTGAACACGGTCA+TGG | + | chr1_2:2236112-2236131 | Msa0049070:CDS | 50.0% | |
TGAACACGGTCATGGCTGAA+AGG | + | chr1_2:2236120-2236139 | Msa0049070:CDS | 50.0% | |
TCGGTTCAGCTACCTTCAGT+AGG | + | chr1_2:2236162-2236181 | Msa0049070:CDS | 50.0% | |
CGGTTCAGCTACCTTCAGTA+GGG | + | chr1_2:2236163-2236182 | Msa0049070:CDS | 50.0% | |
!! | ATCGAGAGCATCCCTACTGA+AGG | - | chr1_2:2236177-2236196 | None:intergenic | 50.0% |
TTCAGTAGGGATGCTCTCGA+TGG | + | chr1_2:2236176-2236195 | Msa0049070:CDS | 50.0% | |
ACTTGTCGATAAGCACGACC+CGG | + | chr1_2:2236268-2236287 | Msa0049070:CDS | 50.0% | |
GTATGTGGCGTTTATCTCCC+GGG | - | chr1_2:2236289-2236308 | None:intergenic | 50.0% | |
GTACAAGTCTCCCACTCACT+AGG | - | chr1_2:2236631-2236650 | None:intergenic | 50.0% | |
GTTCAAAGTCAGATGGGTGC+AGG | + | chr1_2:2236683-2236702 | Msa0049070:CDS | 50.0% | |
GGATGTGACAGAGGCTTACT+AGG | + | chr1_2:2236746-2236765 | Msa0049070:CDS | 50.0% | |
GCCACTTGTCAATGCAAGGT+AGG | - | chr1_2:2236922-2236941 | None:intergenic | 50.0% | |
GACAAGTGGCTCATCAAGCA+TGG | + | chr1_2:2236932-2236951 | Msa0049070:CDS | 50.0% | |
TTCACTCAATGGGATCCAGG+AGG | + | chr1_2:2237283-2237302 | Msa0049070:intron | 50.0% | |
TCACTCAATGGGATCCAGGA+GGG | + | chr1_2:2237284-2237303 | Msa0049070:intron | 50.0% | |
GAGGGTGGTCTCTTGTTCAT+TGG | + | chr1_2:2237302-2237321 | Msa0049070:intron | 50.0% | |
GGTGGTCTCTTGTTCATTGG+AGG | + | chr1_2:2237305-2237324 | Msa0049070:intron | 50.0% | |
TGGAAGAGACTGATGCAGGA+GGG | + | chr1_2:2237389-2237408 | Msa0049070:intron | 50.0% | |
TGACGCAGTACGGAAGCTTA+GGG | - | chr1_2:2237720-2237739 | None:intergenic | 50.0% | |
TTGACGCAGTACGGAAGCTT+AGG | - | chr1_2:2237721-2237740 | None:intergenic | 50.0% | |
GCTTCCGTACTGCGTCAATA+TGG | + | chr1_2:2237723-2237742 | Msa0049070:intron | 50.0% | |
AGAGTCGGAGTGAAAACACG+TGG | - | chr1_2:2235447-2235466 | None:intergenic | 50.0% | |
TAGCTTCGATCCGGAGGTTT+GGG | - | chr1_2:2235480-2235499 | None:intergenic | 50.0% | |
ATAGCTTCGATCCGGAGGTT+TGG | - | chr1_2:2235481-2235500 | None:intergenic | 50.0% | |
TTCTGATAGCTTCGATCCGG+AGG | - | chr1_2:2235486-2235505 | None:intergenic | 50.0% | |
AAAAGCAGTCCAGGTTCAGC+AGG | + | chr1_2:2235696-2235715 | Msa0049070:CDS | 50.0% | |
CTACAAGAACCTGCTGAACC+TGG | - | chr1_2:2235708-2235727 | None:intergenic | 50.0% | |
GGTTCAGCAGGTTCTTGTAG+TGG | + | chr1_2:2235708-2235727 | Msa0049070:CDS | 50.0% | |
TGAAGAACTCCATGTTCCGG+AGG | + | chr1_2:2235953-2235972 | Msa0049070:CDS | 50.0% | |
GATTGTGCTGAACACGGTCA+TGG | + | chr1_2:2236112-2236131 | Msa0049070:CDS | 50.0% | |
TGAACACGGTCATGGCTGAA+AGG | + | chr1_2:2236120-2236139 | Msa0049070:CDS | 50.0% | |
TCGGTTCAGCTACCTTCAGT+AGG | + | chr1_2:2236162-2236181 | Msa0049070:CDS | 50.0% | |
CGGTTCAGCTACCTTCAGTA+GGG | + | chr1_2:2236163-2236182 | Msa0049070:CDS | 50.0% | |
!! | ATCGAGAGCATCCCTACTGA+AGG | - | chr1_2:2236177-2236196 | None:intergenic | 50.0% |
TTCAGTAGGGATGCTCTCGA+TGG | + | chr1_2:2236176-2236195 | Msa0049070:CDS | 50.0% | |
ACTTGTCGATAAGCACGACC+CGG | + | chr1_2:2236268-2236287 | Msa0049070:CDS | 50.0% | |
GTATGTGGCGTTTATCTCCC+GGG | - | chr1_2:2236289-2236308 | None:intergenic | 50.0% | |
GTACAAGTCTCCCACTCACT+AGG | - | chr1_2:2236631-2236650 | None:intergenic | 50.0% | |
GTTCAAAGTCAGATGGGTGC+AGG | + | chr1_2:2236683-2236702 | Msa0049070:CDS | 50.0% | |
GGATGTGACAGAGGCTTACT+AGG | + | chr1_2:2236746-2236765 | Msa0049070:CDS | 50.0% | |
GCCACTTGTCAATGCAAGGT+AGG | - | chr1_2:2236922-2236941 | None:intergenic | 50.0% | |
GACAAGTGGCTCATCAAGCA+TGG | + | chr1_2:2236932-2236951 | Msa0049070:CDS | 50.0% | |
TTCACTCAATGGGATCCAGG+AGG | + | chr1_2:2237283-2237302 | Msa0049070:intron | 50.0% | |
TCACTCAATGGGATCCAGGA+GGG | + | chr1_2:2237284-2237303 | Msa0049070:intron | 50.0% | |
GAGGGTGGTCTCTTGTTCAT+TGG | + | chr1_2:2237302-2237321 | Msa0049070:intron | 50.0% | |
GGTGGTCTCTTGTTCATTGG+AGG | + | chr1_2:2237305-2237324 | Msa0049070:intron | 50.0% | |
TGGAAGAGACTGATGCAGGA+GGG | + | chr1_2:2237389-2237408 | Msa0049070:intron | 50.0% | |
TGACGCAGTACGGAAGCTTA+GGG | - | chr1_2:2237720-2237739 | None:intergenic | 50.0% | |
TTGACGCAGTACGGAAGCTT+AGG | - | chr1_2:2237721-2237740 | None:intergenic | 50.0% | |
GCTTCCGTACTGCGTCAATA+TGG | + | chr1_2:2237723-2237742 | Msa0049070:intron | 50.0% | |
!!! | TTTTCGGTGTCTGGTGGTGC+AGG | - | chr1_2:2235561-2235580 | None:intergenic | 55.0% |
! | GCTTCTTTCTCGGCACTGAG+GGG | - | chr1_2:2235645-2235664 | None:intergenic | 55.0% |
! | GGCTTCTTTCTCGGCACTGA+GGG | - | chr1_2:2235646-2235665 | None:intergenic | 55.0% |
TGGCTTCTTTCTCGGCACTG+AGG | - | chr1_2:2235647-2235666 | None:intergenic | 55.0% | |
CTTGTCGATAAGCACGACCC+GGG | + | chr1_2:2236269-2236288 | Msa0049070:CDS | 55.0% | |
TGAACAAGAGACCACCCTCC+TGG | - | chr1_2:2237301-2237320 | None:intergenic | 55.0% | |
CTCGAGGTCGAGTTCTTCAG+AGG | + | chr1_2:2237366-2237385 | Msa0049070:intron | 55.0% | |
GAGGTCGAGTTCTTCAGAGG+TGG | + | chr1_2:2237369-2237388 | Msa0049070:intron | 55.0% | |
GAGGTGGAAGAGACTGATGC+AGG | + | chr1_2:2237385-2237404 | Msa0049070:intron | 55.0% | |
GTGGAAGAGACTGATGCAGG+AGG | + | chr1_2:2237388-2237407 | Msa0049070:intron | 55.0% | |
!!! | TTTTCGGTGTCTGGTGGTGC+AGG | - | chr1_2:2235561-2235580 | None:intergenic | 55.0% |
! | GCTTCTTTCTCGGCACTGAG+GGG | - | chr1_2:2235645-2235664 | None:intergenic | 55.0% |
! | GGCTTCTTTCTCGGCACTGA+GGG | - | chr1_2:2235646-2235665 | None:intergenic | 55.0% |
TGGCTTCTTTCTCGGCACTG+AGG | - | chr1_2:2235647-2235666 | None:intergenic | 55.0% | |
CTTGTCGATAAGCACGACCC+GGG | + | chr1_2:2236269-2236288 | Msa0049070:CDS | 55.0% | |
TGAACAAGAGACCACCCTCC+TGG | - | chr1_2:2237301-2237320 | None:intergenic | 55.0% | |
CTCGAGGTCGAGTTCTTCAG+AGG | + | chr1_2:2237366-2237385 | Msa0049070:intron | 55.0% | |
GAGGTCGAGTTCTTCAGAGG+TGG | + | chr1_2:2237369-2237388 | Msa0049070:intron | 55.0% | |
GAGGTGGAAGAGACTGATGC+AGG | + | chr1_2:2237385-2237404 | Msa0049070:intron | 55.0% | |
GTGGAAGAGACTGATGCAGG+AGG | + | chr1_2:2237388-2237407 | Msa0049070:intron | 55.0% | |
! | TTGGGTAGTGGCGGCAGAGT+CGG | - | chr1_2:2235462-2235481 | None:intergenic | 60.0% |
! | TCCGGAGGTTTGGGTAGTGG+CGG | - | chr1_2:2235471-2235490 | None:intergenic | 60.0% |
CGATCCGGAGGTTTGGGTAG+TGG | - | chr1_2:2235474-2235493 | None:intergenic | 60.0% | |
! | TGCAGGAAGTGGTGGAGGCA+AGG | - | chr1_2:2235544-2235563 | None:intergenic | 60.0% |
! | TCTGGTGGTGCAGGAAGTGG+TGG | - | chr1_2:2235552-2235571 | None:intergenic | 60.0% |
! | GTGTCTGGTGGTGCAGGAAG+TGG | - | chr1_2:2235555-2235574 | None:intergenic | 60.0% |
TCTCCATCTGTGGCAGCCTC+CGG | - | chr1_2:2235972-2235991 | None:intergenic | 60.0% | |
CTCAATGGGATCCAGGAGGG+TGG | + | chr1_2:2237287-2237306 | Msa0049070:intron | 60.0% | |
! | TTGGGTAGTGGCGGCAGAGT+CGG | - | chr1_2:2235462-2235481 | None:intergenic | 60.0% |
! | TCCGGAGGTTTGGGTAGTGG+CGG | - | chr1_2:2235471-2235490 | None:intergenic | 60.0% |
CGATCCGGAGGTTTGGGTAG+TGG | - | chr1_2:2235474-2235493 | None:intergenic | 60.0% | |
! | TGCAGGAAGTGGTGGAGGCA+AGG | - | chr1_2:2235544-2235563 | None:intergenic | 60.0% |
! | TCTGGTGGTGCAGGAAGTGG+TGG | - | chr1_2:2235552-2235571 | None:intergenic | 60.0% |
! | GTGTCTGGTGGTGCAGGAAG+TGG | - | chr1_2:2235555-2235574 | None:intergenic | 60.0% |
TCTCCATCTGTGGCAGCCTC+CGG | - | chr1_2:2235972-2235991 | None:intergenic | 60.0% | |
CTCAATGGGATCCAGGAGGG+TGG | + | chr1_2:2237287-2237306 | Msa0049070:intron | 60.0% | |
GCCGCCACTACCCAAACCTC+CGG | + | chr1_2:2235467-2235486 | Msa0049070:CDS | 65.0% | |
GGTGGTGCAGGAAGTGGTGG+AGG | - | chr1_2:2235549-2235568 | None:intergenic | 65.0% | |
CTGTGGCAGCCTCCGGAACA+TGG | - | chr1_2:2235965-2235984 | None:intergenic | 65.0% | |
GTTCCGGAGGCTGCCACAGA+TGG | + | chr1_2:2235966-2235985 | Msa0049070:CDS | 65.0% | |
GGAGGCTGCCACAGATGGAG+AGG | + | chr1_2:2235971-2235990 | Msa0049070:CDS | 65.0% | |
GTTGCTGCAGCAGCTCACGC+CGG | + | chr1_2:2237798-2237817 | Msa0049070:intron | 65.0% | |
TTGCTGCAGCAGCTCACGCC+GGG | + | chr1_2:2237799-2237818 | Msa0049070:intron | 65.0% | |
GCCGCCACTACCCAAACCTC+CGG | + | chr1_2:2235467-2235486 | Msa0049070:CDS | 65.0% | |
GGTGGTGCAGGAAGTGGTGG+AGG | - | chr1_2:2235549-2235568 | None:intergenic | 65.0% | |
CTGTGGCAGCCTCCGGAACA+TGG | - | chr1_2:2235965-2235984 | None:intergenic | 65.0% | |
GTTCCGGAGGCTGCCACAGA+TGG | + | chr1_2:2235966-2235985 | Msa0049070:CDS | 65.0% | |
GGAGGCTGCCACAGATGGAG+AGG | + | chr1_2:2235971-2235990 | Msa0049070:CDS | 65.0% | |
GTTGCTGCAGCAGCTCACGC+CGG | + | chr1_2:2237798-2237817 | Msa0049070:intron | 65.0% | |
TTGCTGCAGCAGCTCACGCC+GGG | + | chr1_2:2237799-2237818 | Msa0049070:intron | 65.0% | |
TGCTGCAGCAGCTCACGCCG+GGG | + | chr1_2:2237800-2237819 | Msa0049070:intron | 70.0% | |
TGCTGCAGCAGCTCACGCCG+GGG | + | chr1_2:2237800-2237819 | Msa0049070:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 2235390 | 2237827 | 2235390 | ID=Msa0049070;Name=Msa0049070 |
chr1_2 | mRNA | 2235390 | 2237827 | 2235390 | ID=Msa0049070-mRNA-1;Parent=Msa0049070;Name=Msa0049070-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|584 |
chr1_2 | exon | 2235390 | 2237124 | 2235390 | ID=Msa0049070-mRNA-1:exon:452;Parent=Msa0049070-mRNA-1 |
chr1_2 | exon | 2237808 | 2237827 | 2237808 | ID=Msa0049070-mRNA-1:exon:453;Parent=Msa0049070-mRNA-1 |
chr1_2 | CDS | 2235390 | 2237124 | 2235390 | ID=Msa0049070-mRNA-1:cds;Parent=Msa0049070-mRNA-1 |
chr1_2 | CDS | 2237808 | 2237827 | 2237808 | ID=Msa0049070-mRNA-1:cds;Parent=Msa0049070-mRNA-1 |
Gene Sequence |
Protein sequence |