AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049070 MtrunA17_Chr5g0437131 84.667 300 38 1 88 379 239 538 7.97e-163 481
Msa0049070 MtrunA17_Chr8g0371291 78.667 150 25 1 379 528 80 222 3.68e-79 249
Msa0049070 MtrunA17_Chr6g0480541 61.991 221 62 5 213 421 859 1069 1.55e-73 255
Msa0049070 MtrunA17_Chr5g0406031 68.000 150 47 1 379 528 83 231 3.27e-65 213
Msa0049070 MtrunA17_Chr6g0480481 52.174 161 33 2 227 379 9 133 1.71e-41 149
Msa0049070 MtrunA17_Chr8g0369241 38.378 185 95 5 210 379 91 271 2.82e-24 108
Msa0049070 MtrunA17_Chr4g0060981 35.443 158 86 4 379 528 67 216 1.32e-21 93.6
Msa0049070 MtrunA17_Chr3g0126701 77.358 53 12 0 528 580 510 562 2.03e-20 95.9
Msa0049070 MtrunA17_Chr5g0444161 33.333 132 66 6 408 528 107 227 9.63e-14 71.2
Msa0049070 MtrunA17_Chr1g0147121 61.224 49 19 0 532 580 483 531 1.00e-13 74.7
Msa0049070 MtrunA17_Chr5g0444141 33.333 123 78 3 408 528 142 262 1.96e-12 67.8
Msa0049070 MtrunA17_Chr1g0210061 33.562 146 80 4 247 379 605 746 2.18e-12 70.1
Msa0049070 MtrunA17_Chr8g0388231 43.421 76 42 1 457 532 309 383 3.65e-12 68.6
Msa0049070 MtrunA17_Chr4g0067591 35.065 77 45 1 452 528 75 146 4.44e-12 67.0
Msa0049070 MtrunA17_Chr6g0451031 48.889 45 23 0 484 528 67 111 4.44e-12 63.5
Msa0049070 MtrunA17_Chr3g0128771 41.026 78 39 2 456 530 90 163 5.85e-12 64.7
Msa0049070 MtrunA17_Chr7g0246761 32.558 129 64 5 406 528 21 132 6.34e-12 64.7
Msa0049070 MtrunA17_Chr5g0411081 37.209 86 47 1 443 528 112 190 8.43e-12 67.0
Msa0049070 MtrunA17_Chr8g0366561 43.243 74 41 1 457 530 114 186 1.14e-11 66.6
Msa0049070 MtrunA17_Chr8g0369571 48.889 45 23 0 484 528 88 132 2.97e-11 62.8
Msa0049070 MtrunA17_Chr5g0437361 37.209 86 53 1 450 535 68 152 4.55e-11 62.0
Msa0049070 MtrunA17_Chr6g0451051 31.915 94 61 1 456 549 39 129 5.54e-11 61.2
Msa0049070 MtrunA17_Chr6g0451041 42.188 64 37 0 486 549 18 81 7.91e-11 59.3
Msa0049070 MtrunA17_Chr8g0383921 32.692 104 65 2 455 558 109 207 9.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049070 AT2G40120.1 72.941 170 38 1 218 379 227 396 4.45e-77 255
Msa0049070 AT1G73460.2 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa0049070 AT1G73460.1 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa0049070 AT1G73450.1 66.857 175 50 1 213 379 802 976 2.00e-70 246
Msa0049070 AT3G17750.1 64.571 175 54 1 213 379 788 962 1.46e-66 235
Msa0049070 AT2G17730.1 64.667 150 53 0 379 528 89 238 3.35e-63 208
Msa0049070 AT4G35840.1 64.667 150 53 0 379 528 84 233 1.81e-62 206
Msa0049070 AT5G66070.5 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa0049070 AT5G66070.1 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa0049070 AT2G17730.2 64.336 143 51 0 379 521 89 231 3.80e-58 195
Msa0049070 AT4G35840.2 53.297 182 53 1 379 528 84 265 8.72e-56 189
Msa0049070 AT5G66070.2 54.598 174 50 2 379 528 74 242 2.71e-53 182
Msa0049070 AT5G66070.4 58.929 112 41 1 380 491 75 181 6.33e-36 133
Msa0049070 AT5G66070.3 48.175 137 42 2 379 491 74 205 1.04e-28 114
Msa0049070 AT1G74410.1 36.000 150 93 1 381 530 74 220 3.18e-24 101
Msa0049070 AT5G35980.2 37.569 181 94 5 228 393 92 268 4.48e-23 104
Msa0049070 AT5G35980.3 37.705 183 91 6 228 393 57 233 4.61e-23 104
Msa0049070 AT5G35980.1 37.705 183 91 6 228 393 92 268 4.78e-23 104
Msa0049070 AT3G20395.1 33.333 123 76 2 408 529 97 214 7.74e-16 77.4
Msa0049070 AT3G18773.1 39.560 91 49 2 451 537 97 185 2.69e-13 70.1
Msa0049070 AT5G53430.1 52.632 57 27 0 526 582 486 542 9.76e-13 72.0
Msa0049070 AT1G49200.1 41.892 74 41 1 455 528 107 178 1.30e-12 68.2
Msa0049070 AT2G17450.1 37.179 78 45 1 455 528 67 144 3.78e-12 65.9
Msa0049070 AT5G05280.1 41.333 75 40 1 456 530 87 157 4.55e-12 65.5
Msa0049070 AT4G27910.1 52.941 51 24 0 532 582 477 527 1.30e-11 68.2
Msa0049070 AT5G17600.1 40.000 90 49 2 439 528 100 184 2.77e-11 65.9
Msa0049070 AT1G49210.1 40.541 74 42 1 455 528 106 177 2.88e-11 63.9
Msa0049070 AT5G01880.1 41.558 77 41 2 455 530 76 149 4.68e-11 62.0
Msa0049070 AT3G16720.1 36.364 77 45 1 452 528 89 161 5.35e-11 64.3
Msa0049070 AT2G27940.1 39.241 79 38 2 456 531 114 185 8.04e-11 63.2
Msa0049070 AT5G53110.1 35.443 79 50 1 457 535 302 379 8.20e-11 64.7
Msa0049070 AT5G10380.1 37.209 86 50 2 443 528 96 177 8.37e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGCTACCTTAATTTAA+AGG 0.143063 1_2:+2235743 Msa0049070:CDS
CTTTGGCATTCGAATAATTC+TGG 0.197162 1_2:+2236566 Msa0049070:CDS
CATAAATTCAACCAAGAATA+TGG 0.227119 1_2:+2236389 Msa0049070:CDS
GCTTAATTTCCTTTAAATTA+AGG 0.237843 1_2:-2235752 None:intergenic
ATGCTTCACCACCATATTCT+TGG 0.272074 1_2:-2236400 None:intergenic
TTAAGGTAGCTAATGTTTAT+AGG 0.288253 1_2:-2235735 None:intergenic
TGCTCACTGTCTCTGCATAA+TGG 0.302576 1_2:-2236962 None:intergenic
ACAGAAAAGCAAGCACTTAA+TGG 0.303631 1_2:+2237085 Msa0049070:CDS
TTCCTGTTCAATTTGCCTTC+AGG 0.305106 1_2:+2236841 Msa0049070:CDS
TTGTATGTTCTATTGATCTT+TGG 0.316674 1_2:+2236549 Msa0049070:CDS
CATTACTCGACAGTGTTTAG+AGG 0.319594 1_2:+2236448 Msa0049070:CDS
GGTTAAACGTATGATGATAA+TGG 0.326660 1_2:-2236898 None:intergenic
CATTCGAATAATTCTGGAAT+AGG 0.333342 1_2:+2236572 Msa0049070:CDS
CACTTGTGATTGAGACTATT+GGG 0.340792 1_2:-2236787 None:intergenic
GTTAAACGTATGATGATAAT+GGG 0.346709 1_2:-2236897 None:intergenic
TAGCTTCGATCCGGAGGTTT+GGG 0.350467 1_2:-2235477 None:intergenic
ATGCGCAATGGCTTCTTTCT+CGG 0.367067 1_2:-2235652 None:intergenic
TCACTTGTGATTGAGACTAT+TGG 0.368196 1_2:-2236788 None:intergenic
ATAGCTTCGATCCGGAGGTT+TGG 0.378202 1_2:-2235478 None:intergenic
TTCTAACAGTCTCTCCCATT+TGG 0.383802 1_2:-2236868 None:intergenic
GCTCACTGTCTCTGCATAAT+GGG 0.397596 1_2:-2236961 None:intergenic
GCAATCTGAACTATGCTTCA+TGG 0.399375 1_2:-2235835 None:intergenic
AGACAGAATTATGAGGCTTC+AGG 0.401315 1_2:-2236511 None:intergenic
ATTGCAATATTTACATAACT+TGG 0.409904 1_2:+2236472 Msa0049070:CDS
TAAGAAGCTTGATTTCATCT+AGG 0.411237 1_2:-2236244 None:intergenic
TGCCTTCAGGATTTCCAAAT+GGG 0.419108 1_2:+2236854 Msa0049070:CDS
GAGTGAAGAACTCCATGTTC+CGG 0.421411 1_2:+2235950 Msa0049070:CDS
CGATCCGGAGGTTTGGGTAG+TGG 0.425881 1_2:-2235471 None:intergenic
TTTCAACATATCTTTGACAT+TGG 0.427382 1_2:+2236725 Msa0049070:CDS
GTTCAGCAGGTTCTTGTAGT+GGG 0.431132 1_2:+2235709 Msa0049070:CDS
ATCCTGAAGGCAAATTGAAC+AGG 0.433788 1_2:-2236843 None:intergenic
GTTGCTGCAGCAGCTCACGC+CGG 0.436700 1_2:+2237798 Msa0049070:intron
GGATGTGACAGAGGCTTACT+AGG 0.444182 1_2:+2236746 Msa0049070:CDS
GGCTTCTTTCTCGGCACTGA+GGG 0.450284 1_2:-2235643 None:intergenic
TCTGGTGGTGCAGGAAGTGG+TGG 0.450710 1_2:-2235549 None:intergenic
TATTTCAACAAACATGTAAT+GGG 0.455848 1_2:-2235619 None:intergenic
TTATGACTATTTCTACCATC+AGG 0.460782 1_2:+2236316 Msa0049070:CDS
TCTCCATCTGTGGCAGCCTC+CGG 0.462617 1_2:-2235969 None:intergenic
TTGCTGCAGCAGCTCACGCC+GGG 0.462792 1_2:+2237799 Msa0049070:intron
TTGCCTTCAGGATTTCCAAA+TGG 0.467728 1_2:+2236853 Msa0049070:CDS
CTACAAGAACCTGCTGAACC+TGG 0.473048 1_2:-2235705 None:intergenic
GTGTCTGGTGGTGCAGGAAG+TGG 0.476291 1_2:-2235552 None:intergenic
TTGGGTAGTGGCGGCAGAGT+CGG 0.481200 1_2:-2235459 None:intergenic
TAAGTTTGCACGCAGAAGTT+CGG 0.485105 1_2:-2236357 None:intergenic
AAAAGCAGTCCAGGTTCAGC+AGG 0.497375 1_2:+2235696 Msa0049070:CDS
CACTTAGTTGTGTGCAAGTG+TGG 0.500438 1_2:+2237052 Msa0049070:CDS
CTGTGGCAGCCTCCGGAACA+TGG 0.502526 1_2:-2235962 None:intergenic
GGTTCAGCAGGTTCTTGTAG+TGG 0.505056 1_2:+2235708 Msa0049070:CDS
TTGCAATATTTACATAACTT+GGG 0.506178 1_2:+2236473 Msa0049070:CDS
AGTATGTGGCGTTTATCTCC+CGG 0.506715 1_2:-2236287 None:intergenic
GTTCCGGAGGCTGCCACAGA+TGG 0.508408 1_2:+2235966 Msa0049070:CDS
ATCTTCTGATAGCTTCGATC+CGG 0.508560 1_2:-2235486 None:intergenic
ATAGAGAAGACAGAATTATG+AGG 0.508809 1_2:-2236518 None:intergenic
CACACAACTAAGTGTAGGCT+TGG 0.511853 1_2:-2237043 None:intergenic
GTATTTCAACAAACATGTAA+TGG 0.512226 1_2:-2235620 None:intergenic
CCATTGCTTTCAATCCCATT+CGG 0.516665 1_2:-2235906 None:intergenic
ACCTACCTTGCATTGACAAG+TGG 0.517649 1_2:+2236918 Msa0049070:CDS
ACCAGACACCGAAAATAGAT+TGG 0.519369 1_2:+2235566 Msa0049070:CDS
GGAGTTCTTCACTCAAATAT+CGG 0.520249 1_2:-2235941 None:intergenic
ATCTGTTTCAACAACTTCGA+TGG 0.530198 1_2:-2235880 None:intergenic
GCCATTTGTTGATCATGCCC+CGG 0.533576 1_2:-2237817 None:intergenic
TTGAAACAGATCTACCGAAT+GGG 0.535513 1_2:+2235892 Msa0049070:CDS
TAAAGGAAATTAAGCTGAGT+CGG 0.536864 1_2:+2235760 Msa0049070:CDS
GGTGGTGCAGGAAGTGGTGG+AGG 0.539230 1_2:-2235546 None:intergenic
TCGGTTCAGCTACCTTCAGT+AGG 0.540246 1_2:+2236162 Msa0049070:CDS
TTCTGATAGCTTCGATCCGG+AGG 0.545370 1_2:-2235483 None:intergenic
GATTGTGCTGAACACGGTCA+TGG 0.546919 1_2:+2236112 Msa0049070:CDS
GTGCATGGAAAGAATAGGAC+TGG 0.553009 1_2:+2236065 Msa0049070:CDS
GCCGCCACTACCCAAACCTC+CGG 0.562559 1_2:+2235467 Msa0049070:CDS
AACTTCAGAATTATGCGCAA+TGG 0.563755 1_2:-2235664 None:intergenic
GTATGTGGCGTTTATCTCCC+GGG 0.564712 1_2:-2236286 None:intergenic
TTCAGCAGGTTCTTGTAGTG+GGG 0.568017 1_2:+2235710 Msa0049070:CDS
GTACAAGTCTCCCACTCACT+AGG 0.571667 1_2:-2236628 None:intergenic
AGTCATAAAGACGCAGTATG+TGG 0.573921 1_2:-2236301 None:intergenic
TGCAGGAAGTGGTGGAGGCA+AGG 0.579538 1_2:-2235541 None:intergenic
GACAAGTGGCTCATCAAGCA+TGG 0.579677 1_2:+2236932 Msa0049070:CDS
CTCCCATTTGGAAATCCTGA+AGG 0.579740 1_2:-2236856 None:intergenic
GAATTGTGCATGGAAAGAAT+AGG 0.580039 1_2:+2236060 Msa0049070:CDS
TTCAGTAGGGATGCTCTCGA+TGG 0.583985 1_2:+2236176 Msa0049070:CDS
CGGTTCAGCTACCTTCAGTA+GGG 0.590898 1_2:+2236163 Msa0049070:CDS
TGCTGCAGCAGCTCACGCCG+GGG 0.593738 1_2:+2237800 Msa0049070:intron
GTTCAAAGTCAGATGGGTGC+AGG 0.598923 1_2:+2236683 Msa0049070:CDS
AAAAGCAAGCACTTAATGGA+TGG 0.599900 1_2:+2237089 Msa0049070:CDS
CAATGAATAAATGTTCCTGA+TGG 0.601057 1_2:-2236331 None:intergenic
GAATGCTGTTCAAAGTCAGA+TGG 0.601226 1_2:+2236676 Msa0049070:CDS
GGGATTGAAAGCAATGGAGT+AGG 0.601533 1_2:+2235912 Msa0049070:CDS
TTATTACTAGCCTAGTGAGT+GGG 0.602053 1_2:+2236618 Msa0049070:CDS
TGTGAATGTTTCGATAGTAG+TGG 0.604151 1_2:-2235420 None:intergenic
GGTGAAATTCATCACAACAT+CGG 0.604562 1_2:+2235587 Msa0049070:CDS
TCCGGAGGTTTGGGTAGTGG+CGG 0.605445 1_2:-2235468 None:intergenic
ATGAGCCACTTGTCAATGCA+AGG 0.605600 1_2:-2236923 None:intergenic
GTTGAAACAGATCTACCGAA+TGG 0.607989 1_2:+2235891 Msa0049070:CDS
CCGAATGGGATTGAAAGCAA+TGG 0.608264 1_2:+2235906 Msa0049070:CDS
TTTGACATTGGATGTGACAG+AGG 0.609823 1_2:+2236737 Msa0049070:CDS
TTTGAGCTAAGAATTGTGCA+TGG 0.611242 1_2:+2236050 Msa0049070:CDS
GACTGGATTTGAAGAAAACA+AGG 0.612197 1_2:+2236082 Msa0049070:CDS
TGGCTTCTTTCTCGGCACTG+AGG 0.612609 1_2:-2235644 None:intergenic
ATCGAGAGCATCCCTACTGA+AGG 0.612994 1_2:-2236174 None:intergenic
GCATAGTTCAGATTGCTACA+AGG 0.615746 1_2:+2235842 Msa0049070:CDS
TACTATGTGACAGATTATCT+CGG 0.618368 1_2:+2236143 Msa0049070:CDS
ATTATTATCCTCTCCATCTG+TGG 0.619270 1_2:-2235979 None:intergenic
TGAACACGGTCATGGCTGAA+AGG 0.620232 1_2:+2236120 Msa0049070:CDS
CTTGTCGATAAGCACGACCC+GGG 0.628203 1_2:+2236269 Msa0049070:CDS
ACTTGCACACAACTAAGTGT+AGG 0.640898 1_2:-2237048 None:intergenic
ACTTTGAACAGCATTCAACA+TGG 0.643300 1_2:-2236669 None:intergenic
GGAGGCTGCCACAGATGGAG+AGG 0.645603 1_2:+2235971 Msa0049070:CDS
AAGCTATCAGAAGATTCTCG+TGG 0.653064 1_2:+2235494 Msa0049070:CDS
ATTATTACTAGCCTAGTGAG+TGG 0.653310 1_2:+2236617 Msa0049070:CDS
TGAAGAACTCCATGTTCCGG+AGG 0.656619 1_2:+2235953 Msa0049070:CDS
AATGCTGTTCAAAGTCAGAT+GGG 0.656650 1_2:+2236677 Msa0049070:CDS
ACTTGTCGATAAGCACGACC+CGG 0.656700 1_2:+2236268 Msa0049070:CDS
GCTTCTTTCTCGGCACTGAG+GGG 0.663612 1_2:-2235642 None:intergenic
AAATTCAACCAAGAATATGG+TGG 0.668921 1_2:+2236392 Msa0049070:CDS
TTAAACGTATGATGATAATG+GGG 0.679275 1_2:-2236896 None:intergenic
AGACTTGTACGTGAAAGAGT+TGG 0.691935 1_2:+2236641 Msa0049070:CDS
GCCACTTGTCAATGCAAGGT+AGG 0.694066 1_2:-2236919 None:intergenic
AATGGATGGCAACAACACAA+AGG 0.695166 1_2:+2237103 Msa0049070:CDS
AGTGCTGATTGTGCTGAACA+CGG 0.717577 1_2:+2236106 Msa0049070:CDS
AGAGTCGGAGTGAAAACACG+TGG 0.744559 1_2:-2235444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAACAAACATGTAAT+GGG - chr1_2:2235622-2235641 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - chr1_2:2235755-2235774 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + chr1_2:2236205-2236224 Msa0049070:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + chr1_2:2236472-2236491 Msa0049070:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + chr1_2:2236473-2236492 Msa0049070:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + chr1_2:2237001-2237020 Msa0049070:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr1_2:2237449-2237468 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + chr1_2:2237488-2237507 Msa0049070:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + chr1_2:2237489-2237508 Msa0049070:intron 20.0%
!! TATTTCAACAAACATGTAAT+GGG - chr1_2:2235622-2235641 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - chr1_2:2235755-2235774 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + chr1_2:2236205-2236224 Msa0049070:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + chr1_2:2236472-2236491 Msa0049070:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + chr1_2:2236473-2236492 Msa0049070:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + chr1_2:2237001-2237020 Msa0049070:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr1_2:2237449-2237468 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + chr1_2:2237488-2237507 Msa0049070:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + chr1_2:2237489-2237508 Msa0049070:intron 20.0%
!! GAATTTCACCAATCTATTTT+CGG - chr1_2:2235577-2235596 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - chr1_2:2235623-2235642 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - chr1_2:2235738-2235757 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + chr1_2:2235743-2235762 Msa0049070:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + chr1_2:2236389-2236408 Msa0049070:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + chr1_2:2236549-2236568 Msa0049070:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + chr1_2:2236725-2236744 Msa0049070:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - chr1_2:2236899-2236918 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - chr1_2:2236900-2236919 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - chr1_2:2237131-2237150 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + chr1_2:2237215-2237234 Msa0049070:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + chr1_2:2237216-2237235 Msa0049070:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + chr1_2:2237679-2237698 Msa0049070:intron 25.0%
!! GAATTTCACCAATCTATTTT+CGG - chr1_2:2235577-2235596 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - chr1_2:2235623-2235642 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - chr1_2:2235738-2235757 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + chr1_2:2235743-2235762 Msa0049070:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + chr1_2:2236389-2236408 Msa0049070:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + chr1_2:2236549-2236568 Msa0049070:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + chr1_2:2236725-2236744 Msa0049070:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - chr1_2:2236899-2236918 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - chr1_2:2236900-2236919 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - chr1_2:2237131-2237150 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + chr1_2:2237215-2237234 Msa0049070:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + chr1_2:2237216-2237235 Msa0049070:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + chr1_2:2237679-2237698 Msa0049070:intron 25.0%
TAAAGGAAATTAAGCTGAGT+CGG + chr1_2:2235760-2235779 Msa0049070:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + chr1_2:2235779-2235798 Msa0049070:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + chr1_2:2235780-2235799 Msa0049070:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - chr1_2:2236016-2236035 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + chr1_2:2236143-2236162 Msa0049070:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - chr1_2:2236247-2236266 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + chr1_2:2236316-2236335 Msa0049070:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - chr1_2:2236334-2236353 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + chr1_2:2236392-2236411 Msa0049070:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - chr1_2:2236521-2236540 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + chr1_2:2236572-2236591 Msa0049070:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - chr1_2:2236901-2236920 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + chr1_2:2237122-2237141 Msa0049070:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + chr1_2:2237152-2237171 Msa0049070:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + chr1_2:2237350-2237369 Msa0049070:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - chr1_2:2237507-2237526 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - chr1_2:2237508-2237527 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - chr1_2:2237554-2237573 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr1_2:2237625-2237644 None:intergenic 30.0%
TAAAGGAAATTAAGCTGAGT+CGG + chr1_2:2235760-2235779 Msa0049070:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + chr1_2:2235779-2235798 Msa0049070:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + chr1_2:2235780-2235799 Msa0049070:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - chr1_2:2236016-2236035 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + chr1_2:2236143-2236162 Msa0049070:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - chr1_2:2236247-2236266 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + chr1_2:2236316-2236335 Msa0049070:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - chr1_2:2236334-2236353 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + chr1_2:2236392-2236411 Msa0049070:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - chr1_2:2236521-2236540 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + chr1_2:2236572-2236591 Msa0049070:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - chr1_2:2236901-2236920 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + chr1_2:2237122-2237141 Msa0049070:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + chr1_2:2237152-2237171 Msa0049070:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + chr1_2:2237350-2237369 Msa0049070:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - chr1_2:2237507-2237526 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - chr1_2:2237508-2237527 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - chr1_2:2237554-2237573 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr1_2:2237625-2237644 None:intergenic 30.0%
TGTGAATGTTTCGATAGTAG+TGG - chr1_2:2235423-2235442 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + chr1_2:2235587-2235606 Msa0049070:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - chr1_2:2235667-2235686 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - chr1_2:2235883-2235902 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + chr1_2:2235892-2235911 Msa0049070:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - chr1_2:2235944-2235963 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - chr1_2:2235982-2236001 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + chr1_2:2236050-2236069 Msa0049070:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + chr1_2:2236060-2236079 Msa0049070:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + chr1_2:2236082-2236101 Msa0049070:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + chr1_2:2236566-2236585 Msa0049070:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + chr1_2:2236617-2236636 Msa0049070:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + chr1_2:2236618-2236637 Msa0049070:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - chr1_2:2236672-2236691 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + chr1_2:2236677-2236696 Msa0049070:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - chr1_2:2236790-2236809 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - chr1_2:2236791-2236810 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + chr1_2:2236809-2236828 Msa0049070:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + chr1_2:2237085-2237104 Msa0049070:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + chr1_2:2237089-2237108 Msa0049070:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + chr1_2:2237537-2237556 Msa0049070:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + chr1_2:2237586-2237605 Msa0049070:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + chr1_2:2237589-2237608 Msa0049070:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - chr1_2:2237618-2237637 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - chr1_2:2237626-2237645 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr1_2:2237655-2237674 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr1_2:2237656-2237675 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + chr1_2:2237744-2237763 Msa0049070:intron 35.0%
TGTGAATGTTTCGATAGTAG+TGG - chr1_2:2235423-2235442 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + chr1_2:2235587-2235606 Msa0049070:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - chr1_2:2235667-2235686 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - chr1_2:2235883-2235902 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + chr1_2:2235892-2235911 Msa0049070:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - chr1_2:2235944-2235963 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - chr1_2:2235982-2236001 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + chr1_2:2236050-2236069 Msa0049070:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + chr1_2:2236060-2236079 Msa0049070:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + chr1_2:2236082-2236101 Msa0049070:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + chr1_2:2236566-2236585 Msa0049070:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + chr1_2:2236617-2236636 Msa0049070:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + chr1_2:2236618-2236637 Msa0049070:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - chr1_2:2236672-2236691 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + chr1_2:2236677-2236696 Msa0049070:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - chr1_2:2236790-2236809 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - chr1_2:2236791-2236810 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + chr1_2:2236809-2236828 Msa0049070:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + chr1_2:2237085-2237104 Msa0049070:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + chr1_2:2237089-2237108 Msa0049070:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + chr1_2:2237537-2237556 Msa0049070:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + chr1_2:2237586-2237605 Msa0049070:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + chr1_2:2237589-2237608 Msa0049070:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - chr1_2:2237618-2237637 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - chr1_2:2237626-2237645 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr1_2:2237655-2237674 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr1_2:2237656-2237675 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + chr1_2:2237744-2237763 Msa0049070:intron 35.0%
ATCTTCTGATAGCTTCGATC+CGG - chr1_2:2235489-2235508 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + chr1_2:2235494-2235513 Msa0049070:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - chr1_2:2235567-2235586 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + chr1_2:2235566-2235585 Msa0049070:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - chr1_2:2235570-2235589 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - chr1_2:2235838-2235857 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + chr1_2:2235842-2235861 Msa0049070:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + chr1_2:2235891-2235910 Msa0049070:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - chr1_2:2235909-2235928 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - chr1_2:2236304-2236323 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - chr1_2:2236360-2236379 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - chr1_2:2236403-2236422 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + chr1_2:2236448-2236467 Msa0049070:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - chr1_2:2236514-2236533 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + chr1_2:2236641-2236660 Msa0049070:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + chr1_2:2236676-2236695 Msa0049070:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + chr1_2:2236737-2236756 Msa0049070:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + chr1_2:2236841-2236860 Msa0049070:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - chr1_2:2236846-2236865 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + chr1_2:2236853-2236872 Msa0049070:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + chr1_2:2236854-2236873 Msa0049070:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - chr1_2:2236871-2236890 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - chr1_2:2237051-2237070 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + chr1_2:2237062-2237081 Msa0049070:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + chr1_2:2237103-2237122 Msa0049070:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - chr1_2:2237181-2237200 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + chr1_2:2237180-2237199 Msa0049070:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + chr1_2:2237273-2237292 Msa0049070:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + chr1_2:2237320-2237339 Msa0049070:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + chr1_2:2237321-2237340 Msa0049070:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + chr1_2:2237615-2237634 Msa0049070:intron 40.0%
ATCTTCTGATAGCTTCGATC+CGG - chr1_2:2235489-2235508 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + chr1_2:2235494-2235513 Msa0049070:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - chr1_2:2235567-2235586 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + chr1_2:2235566-2235585 Msa0049070:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - chr1_2:2235570-2235589 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - chr1_2:2235838-2235857 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + chr1_2:2235842-2235861 Msa0049070:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + chr1_2:2235891-2235910 Msa0049070:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - chr1_2:2235909-2235928 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - chr1_2:2236304-2236323 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - chr1_2:2236360-2236379 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - chr1_2:2236403-2236422 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + chr1_2:2236448-2236467 Msa0049070:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - chr1_2:2236514-2236533 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + chr1_2:2236641-2236660 Msa0049070:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + chr1_2:2236676-2236695 Msa0049070:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + chr1_2:2236737-2236756 Msa0049070:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + chr1_2:2236841-2236860 Msa0049070:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - chr1_2:2236846-2236865 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + chr1_2:2236853-2236872 Msa0049070:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + chr1_2:2236854-2236873 Msa0049070:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - chr1_2:2236871-2236890 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - chr1_2:2237051-2237070 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + chr1_2:2237062-2237081 Msa0049070:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + chr1_2:2237103-2237122 Msa0049070:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - chr1_2:2237181-2237200 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + chr1_2:2237180-2237199 Msa0049070:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + chr1_2:2237273-2237292 Msa0049070:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + chr1_2:2237320-2237339 Msa0049070:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + chr1_2:2237321-2237340 Msa0049070:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + chr1_2:2237615-2237634 Msa0049070:intron 40.0%
ATGCGCAATGGCTTCTTTCT+CGG - chr1_2:2235655-2235674 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - chr1_2:2235690-2235709 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + chr1_2:2235687-2235706 Msa0049070:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + chr1_2:2235709-2235728 Msa0049070:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + chr1_2:2235710-2235729 Msa0049070:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + chr1_2:2235906-2235925 Msa0049070:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + chr1_2:2235912-2235931 Msa0049070:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + chr1_2:2235950-2235969 Msa0049070:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + chr1_2:2236065-2236084 Msa0049070:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + chr1_2:2236106-2236125 Msa0049070:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - chr1_2:2236290-2236309 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - chr1_2:2236859-2236878 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + chr1_2:2236918-2236937 Msa0049070:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - chr1_2:2236926-2236945 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - chr1_2:2236964-2236983 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - chr1_2:2236965-2236984 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - chr1_2:2237046-2237065 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + chr1_2:2237052-2237071 Msa0049070:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + chr1_2:2237061-2237080 Msa0049070:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + chr1_2:2237170-2237189 Msa0049070:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + chr1_2:2237174-2237193 Msa0049070:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + chr1_2:2237272-2237291 Msa0049070:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - chr1_2:2237278-2237297 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + chr1_2:2237280-2237299 Msa0049070:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + chr1_2:2237596-2237615 Msa0049070:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + chr1_2:2237724-2237743 Msa0049070:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - chr1_2:2237730-2237749 None:intergenic 45.0%
ATGCGCAATGGCTTCTTTCT+CGG - chr1_2:2235655-2235674 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - chr1_2:2235690-2235709 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + chr1_2:2235687-2235706 Msa0049070:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + chr1_2:2235709-2235728 Msa0049070:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + chr1_2:2235710-2235729 Msa0049070:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + chr1_2:2235906-2235925 Msa0049070:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + chr1_2:2235912-2235931 Msa0049070:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + chr1_2:2235950-2235969 Msa0049070:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + chr1_2:2236065-2236084 Msa0049070:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + chr1_2:2236106-2236125 Msa0049070:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - chr1_2:2236290-2236309 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - chr1_2:2236859-2236878 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + chr1_2:2236918-2236937 Msa0049070:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - chr1_2:2236926-2236945 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - chr1_2:2236964-2236983 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - chr1_2:2236965-2236984 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - chr1_2:2237046-2237065 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + chr1_2:2237052-2237071 Msa0049070:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + chr1_2:2237061-2237080 Msa0049070:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + chr1_2:2237170-2237189 Msa0049070:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + chr1_2:2237174-2237193 Msa0049070:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + chr1_2:2237272-2237291 Msa0049070:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - chr1_2:2237278-2237297 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + chr1_2:2237280-2237299 Msa0049070:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + chr1_2:2237596-2237615 Msa0049070:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + chr1_2:2237724-2237743 Msa0049070:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - chr1_2:2237730-2237749 None:intergenic 45.0%
AGAGTCGGAGTGAAAACACG+TGG - chr1_2:2235447-2235466 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - chr1_2:2235480-2235499 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - chr1_2:2235481-2235500 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - chr1_2:2235486-2235505 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + chr1_2:2235696-2235715 Msa0049070:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - chr1_2:2235708-2235727 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + chr1_2:2235708-2235727 Msa0049070:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + chr1_2:2235953-2235972 Msa0049070:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + chr1_2:2236112-2236131 Msa0049070:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + chr1_2:2236120-2236139 Msa0049070:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + chr1_2:2236162-2236181 Msa0049070:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + chr1_2:2236163-2236182 Msa0049070:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - chr1_2:2236177-2236196 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + chr1_2:2236176-2236195 Msa0049070:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + chr1_2:2236268-2236287 Msa0049070:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - chr1_2:2236289-2236308 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - chr1_2:2236631-2236650 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + chr1_2:2236683-2236702 Msa0049070:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + chr1_2:2236746-2236765 Msa0049070:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - chr1_2:2236922-2236941 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + chr1_2:2236932-2236951 Msa0049070:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + chr1_2:2237283-2237302 Msa0049070:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + chr1_2:2237284-2237303 Msa0049070:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + chr1_2:2237302-2237321 Msa0049070:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + chr1_2:2237305-2237324 Msa0049070:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + chr1_2:2237389-2237408 Msa0049070:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - chr1_2:2237720-2237739 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - chr1_2:2237721-2237740 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + chr1_2:2237723-2237742 Msa0049070:intron 50.0%
AGAGTCGGAGTGAAAACACG+TGG - chr1_2:2235447-2235466 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - chr1_2:2235480-2235499 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - chr1_2:2235481-2235500 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - chr1_2:2235486-2235505 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + chr1_2:2235696-2235715 Msa0049070:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - chr1_2:2235708-2235727 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + chr1_2:2235708-2235727 Msa0049070:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + chr1_2:2235953-2235972 Msa0049070:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + chr1_2:2236112-2236131 Msa0049070:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + chr1_2:2236120-2236139 Msa0049070:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + chr1_2:2236162-2236181 Msa0049070:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + chr1_2:2236163-2236182 Msa0049070:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - chr1_2:2236177-2236196 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + chr1_2:2236176-2236195 Msa0049070:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + chr1_2:2236268-2236287 Msa0049070:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - chr1_2:2236289-2236308 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - chr1_2:2236631-2236650 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + chr1_2:2236683-2236702 Msa0049070:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + chr1_2:2236746-2236765 Msa0049070:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - chr1_2:2236922-2236941 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + chr1_2:2236932-2236951 Msa0049070:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + chr1_2:2237283-2237302 Msa0049070:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + chr1_2:2237284-2237303 Msa0049070:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + chr1_2:2237302-2237321 Msa0049070:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + chr1_2:2237305-2237324 Msa0049070:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + chr1_2:2237389-2237408 Msa0049070:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - chr1_2:2237720-2237739 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - chr1_2:2237721-2237740 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + chr1_2:2237723-2237742 Msa0049070:intron 50.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - chr1_2:2235561-2235580 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - chr1_2:2235645-2235664 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - chr1_2:2235646-2235665 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - chr1_2:2235647-2235666 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + chr1_2:2236269-2236288 Msa0049070:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - chr1_2:2237301-2237320 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + chr1_2:2237366-2237385 Msa0049070:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + chr1_2:2237369-2237388 Msa0049070:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + chr1_2:2237385-2237404 Msa0049070:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + chr1_2:2237388-2237407 Msa0049070:intron 55.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - chr1_2:2235561-2235580 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - chr1_2:2235645-2235664 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - chr1_2:2235646-2235665 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - chr1_2:2235647-2235666 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + chr1_2:2236269-2236288 Msa0049070:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - chr1_2:2237301-2237320 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + chr1_2:2237366-2237385 Msa0049070:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + chr1_2:2237369-2237388 Msa0049070:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + chr1_2:2237385-2237404 Msa0049070:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + chr1_2:2237388-2237407 Msa0049070:intron 55.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - chr1_2:2235462-2235481 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - chr1_2:2235471-2235490 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - chr1_2:2235474-2235493 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - chr1_2:2235544-2235563 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - chr1_2:2235552-2235571 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - chr1_2:2235555-2235574 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - chr1_2:2235972-2235991 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + chr1_2:2237287-2237306 Msa0049070:intron 60.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - chr1_2:2235462-2235481 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - chr1_2:2235471-2235490 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - chr1_2:2235474-2235493 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - chr1_2:2235544-2235563 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - chr1_2:2235552-2235571 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - chr1_2:2235555-2235574 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - chr1_2:2235972-2235991 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + chr1_2:2237287-2237306 Msa0049070:intron 60.0%
GCCGCCACTACCCAAACCTC+CGG + chr1_2:2235467-2235486 Msa0049070:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - chr1_2:2235549-2235568 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - chr1_2:2235965-2235984 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + chr1_2:2235966-2235985 Msa0049070:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + chr1_2:2235971-2235990 Msa0049070:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + chr1_2:2237798-2237817 Msa0049070:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + chr1_2:2237799-2237818 Msa0049070:intron 65.0%
GCCGCCACTACCCAAACCTC+CGG + chr1_2:2235467-2235486 Msa0049070:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - chr1_2:2235549-2235568 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - chr1_2:2235965-2235984 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + chr1_2:2235966-2235985 Msa0049070:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + chr1_2:2235971-2235990 Msa0049070:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + chr1_2:2237798-2237817 Msa0049070:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + chr1_2:2237799-2237818 Msa0049070:intron 65.0%
TGCTGCAGCAGCTCACGCCG+GGG + chr1_2:2237800-2237819 Msa0049070:intron 70.0%
TGCTGCAGCAGCTCACGCCG+GGG + chr1_2:2237800-2237819 Msa0049070:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2235390 2237827 2235390 ID=Msa0049070;Name=Msa0049070
chr1_2 mRNA 2235390 2237827 2235390 ID=Msa0049070-mRNA-1;Parent=Msa0049070;Name=Msa0049070-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|584
chr1_2 exon 2235390 2237124 2235390 ID=Msa0049070-mRNA-1:exon:452;Parent=Msa0049070-mRNA-1
chr1_2 exon 2237808 2237827 2237808 ID=Msa0049070-mRNA-1:exon:453;Parent=Msa0049070-mRNA-1
chr1_2 CDS 2235390 2237124 2235390 ID=Msa0049070-mRNA-1:cds;Parent=Msa0049070-mRNA-1
chr1_2 CDS 2237808 2237827 2237808 ID=Msa0049070-mRNA-1:cds;Parent=Msa0049070-mRNA-1
Gene Sequence

>Msa0049070

ATGTTAAACACATCATCTTTGAATTGTAATCCACTACTATCGAAACATTCACATCCACGTGTTTTCACTCCGACTCTGCCGCCACTACCCAAACCTCCGGATCGAAGCTATCAGAAGATTCTCGTGGATTTTCAAGTGACACAAAATTTCACCTTGCCTCCACCACTTCCTGCACCACCAGACACCGAAAATAGATTGGTGAAATTCATCACAACATCGGTTTCTTGCGCCCATTACATGTTTGTTGAAATACCCCTCAGTGCCGAGAAAGAAGCCATTGCGCATAATTCTGAAGTTCCATTTTGCAAAAGCAGTCCAGGTTCAGCAGGTTCTTGTAGTGGGGATCCTATAAACATTAGCTACCTTAATTTAAAGGAAATTAAGCTGAGTCGGAATGATTTTCATATGAAGGGTATTAATTCTTTTGATTTTGTTCATGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCTCTATGACTTAACCATCGAAGTTGTTGAAACAGATCTACCGAATGGGATTGAAAGCAATGGAGTAGGTGATGACCGATATTTGAGTGAAGAACTCCATGTTCCGGAGGCTGCCACAGATGGAGAGGATAATAATACTAATGACGACCTCTTAAAATACAGTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTGCATGGAAAGAATAGGACTGGATTTGAAGAAAACAAGGAAGTGCTGATTGTGCTGAACACGGTCATGGCTGAAAGGTACTATGTGACAGATTATCTCGGTTCAGCTACCTTCAGTAGGGATGCTCTCGATGGTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTCATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCGATAAGCACGACCCGGGAGATAAACGCCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCATAAATTCAACCAAGAATATGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGCTCATTACTCGACAGTGTTTAGAGGCATTGCAATATTTACATAACTTGGGAATTATTCAATGTGACCTGAAGCCTCATAATTCTGTCTTCTCTATTGAAGTATTTGTATGTTCTATTGATCTTTGGCATTCGAATAATTCTGGAATAGGATGTTTCTTATACTTGATTGATATTATTACTAGCCTAGTGAGTGGGAGACTTGTACGTGAAAGAGTTGGTGAAGCCATGTTGAATGCTGTTCAAAGTCAGATGGGTGCAGGTGAAATGAGATTTTATGAGTTTCAACATATCTTTGACATTGGATGTGACAGAGGCTTACTAGGAGCTTCAGTTGAAAAGATCCCAATAGTCTCAATCACAAGTGACAACAATTTTGATGCTTGTGGCGATATAATTTCCTGTTCAATTTGCCTTCAGGATTTCCAAATGGGAGAGACTGTTAGAAGCTTGCCCCATTATCATCATACGTTTAACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGCTTGTGCCCATTATGCAGAGACAGTGAGCAGCTAGTGCTTTCAAATAAGATTAATGTTTTTTGCAATGGCGTGAAAAGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAATGGATGGCAACAACACAAAGCAGCTCACGCCGGGGCATGA

Protein sequence

>Msa0049070

MLNTSSLNCNPLLSKHSHPRVFTPTLPPLPKPPDRSYQKILVDFQVTQNFTLPPPLPAPPDTENRLVKFITTSVSCAHYMFVEIPLSAEKEAIAHNSEVPFCKSSPGSAGSCSGDPINISYLNLKEIKLSRNDFHMKGINSFDFVHVLTMKHSSDCYKDLYDLTIEVVETDLPNGIESNGVGDDRYLSEELHVPEAATDGEDNNTNDDLLKYSQDDEYEVFELRIVHGKNRTGFEENKEVLIVLNTVMAERYYVTDYLGSATFSRDALDGCLKIIKNDKDFFHQSLDEIKLLKLVDKHDPGDKRHILRLYDYFYHQEHLFIVTELLRANLYEFHKFNQEYGGEAYFTLKRLQLITRQCLEALQYLHNLGIIQCDLKPHNSVFSIEVFVCSIDLWHSNNSGIGCFLYLIDIITSLVSGRLVRERVGEAMLNAVQSQMGAGEMRFYEFQHIFDIGCDRGLLGASVEKIPIVSITSDNNFDACGDIISCSICLQDFQMGETVRSLPHYHHTFNLPCIDKWLIKHGLCPLCRDSEQLVLSNKINVFCNGVKSIYFPSLHLVVCKCGFCGTEKQALNGWQQHKAAHAGA*