AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050280 MtrunA17_Chr1g0165461 95.152 330 12 1 1 330 1 326 0.0 634
Msa0050280 MtrunA17_Chr7g0263441 32.308 130 82 3 95 222 65 190 5.33e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050280 AT4G28360.1 59.398 266 91 7 1 260 1 255 2.53e-95 284
Msa0050280 AT1G52370.3 57.895 266 94 6 1 260 1 254 1.94e-86 261
Msa0050280 AT1G52370.2 57.895 266 94 6 1 260 1 254 1.94e-86 261
Msa0050280 AT1G52370.4 57.895 266 94 6 1 260 1 254 1.94e-86 261
Msa0050280 AT1G52370.1 57.895 266 94 6 1 260 1 254 1.94e-86 261
Msa0050280 ATCG00810.1 31.818 110 75 0 111 220 12 121 1.04e-13 68.6

Find 91 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGTTTGATTTATGTTTA+TGG 0.148230 1_2:-4036459 Msa0050280:three_prime_UTR
GCAATTTGTGCCTCTTCTTC+AGG 0.198947 1_2:+4036813 None:intergenic
GCAACCAAGTTGACCTTCTT+TGG 0.202936 1_2:+4037523 None:intergenic
GGTCAACTTGGTTGCTGCTT+TGG 0.281050 1_2:-4037515 Msa0050280:CDS
ATGAAACTTGCAATTAAATA+AGG 0.304656 1_2:+4036479 None:intergenic
TATTGAGACCACTCCTGTTT+GGG 0.305553 1_2:-4036724 Msa0050280:CDS
CTTTCTCTCCCACGGTTATT+CGG 0.351256 1_2:+4042167 None:intergenic
TATTCTTCGTTGCATTCATA+AGG 0.355668 1_2:-4041610 Msa0050280:CDS
AAACGAGACCACACCTGTTA+AGG 0.357620 1_2:-4036580 Msa0050280:CDS
ATCACAAGACCACTCGTGTT+TGG 0.368062 1_2:-4036632 Msa0050280:CDS
TAATACATAATCTAGGCATT+TGG 0.370055 1_2:+4036352 None:intergenic
TTATTGAGACCACTCCTGTT+TGG 0.371095 1_2:-4036725 Msa0050280:CDS
TTATTTAATTGCAAGTTTCA+TGG 0.376631 1_2:-4036477 Msa0050280:three_prime_UTR
CAATTTGTGCCTCTTCTTCA+GGG 0.384437 1_2:+4036814 None:intergenic
AAACGAGACCACTCCTGTTT+GGG 0.392516 1_2:-4036676 Msa0050280:CDS
AAAACGAGACCACTCCTGTT+TGG 0.395474 1_2:-4036677 Msa0050280:CDS
TCACAAGACCACTCGTGTTT+GGG 0.406538 1_2:-4036631 Msa0050280:CDS
TTATGAATGCAACGAAGAAT+AGG 0.408686 1_2:+4041612 None:intergenic
GTTGAGAAATATGCAGACTA+AGG 0.409012 1_2:-4036394 Msa0050280:three_prime_UTR
AAATAAGAAAGCTATTACTA+AGG 0.415985 1_2:-4039472 Msa0050280:CDS
AACGAGACCACACCTGTTAA+GGG 0.417185 1_2:-4036579 Msa0050280:CDS
AGATCTCCCTTTGCCATGGA+TGG 0.424826 1_2:+4036890 None:intergenic
TTGGTTGCTGCTTTGGTTCG+TGG 0.425968 1_2:-4037508 Msa0050280:CDS
ATCCATGGCAAAGGGAGATC+TGG 0.427839 1_2:-4036888 Msa0050280:CDS
TATGAATGCAACGAAGAATA+GGG 0.434157 1_2:+4041613 None:intergenic
AAAATTCTAATACATAATCT+AGG 0.435442 1_2:+4036345 None:intergenic
GATTGTGAGAAGCGTTTGCT+CGG 0.435749 1_2:+4037079 None:intergenic
TTAGTTCCAGTTTCATCATT+CGG 0.436163 1_2:-4039516 Msa0050280:CDS
GAACTACCGAATGATGAAAC+TGG 0.439490 1_2:+4039510 None:intergenic
GGAACTAAAGGCGACGAAAC+AGG 0.440525 1_2:+4039531 None:intergenic
ATTCTTCGTTGCATTCATAA+GGG 0.453261 1_2:-4041609 Msa0050280:CDS
TCTTACAGCTGAAGCATTTG+TGG 0.454900 1_2:-4036940 Msa0050280:intron
AAGGTTTGTAGCCGAATGAT+TGG 0.455474 1_2:+4041575 None:intergenic
CTTACAGCTGAAGCATTTGT+GGG 0.464301 1_2:-4036939 Msa0050280:intron
AATGAGAATAATACCGATCA+TGG 0.464413 1_2:+4036284 None:intergenic
CGAATAACCGTGGGAGAGAA+AGG 0.476431 1_2:-4042166 Msa0050280:five_prime_UTR
TATTGAAAACGGTGATCAAA+AGG 0.481092 1_2:+4041366 None:intergenic
AATATACCTGATATTGAAAA+CGG 0.481833 1_2:+4041355 None:intergenic
ACAACAGTTAGCCTACATTC+TGG 0.484826 1_2:+4036852 None:intergenic
GATGCAGACCGCCTAATTGT+TGG 0.485034 1_2:-4037048 Msa0050280:intron
AGCTGAAGCATTTGTGGGAA+AGG 0.485918 1_2:-4036934 Msa0050280:CDS
ACTGGAGTCTGCCAATCATT+CGG 0.487248 1_2:-4041586 Msa0050280:CDS
GCAAACGCTTCTCACAATCA+TGG 0.490598 1_2:-4037075 Msa0050280:CDS
AAGAAGAGAGTTTCCATCCA+TGG 0.493272 1_2:-4036903 Msa0050280:CDS
GTTGCAAGTGTTAGTAAAGC+GGG 0.502385 1_2:-4037458 Msa0050280:CDS
AATATTAAAGAAAATAAAGC+AGG 0.507004 1_2:-4039433 Msa0050280:intron
TTACAGAGGCAATGGTCAAA+AGG 0.509414 1_2:-4041408 Msa0050280:CDS
CGCTTCTCACAATCATGGGT+TGG 0.512404 1_2:-4037070 Msa0050280:CDS
TCAAAAGGCCTTGAGATACT+TGG 0.512610 1_2:+4041381 None:intergenic
TCGTTGCATTCATAAGGGAC+TGG 0.514804 1_2:-4041604 Msa0050280:CDS
TAGGATCGAAGGTGAGAGTG+TGG 0.514813 1_2:-4042217 None:intergenic
CAATCATGGTGCAGTGGCAG+AGG 0.514969 1_2:-4041644 Msa0050280:exon
GCTGAAGCATTTGTGGGAAA+GGG 0.521445 1_2:-4036933 Msa0050280:CDS
GAATCTTACTTACACTGCGT+TGG 0.524110 1_2:+4042080 None:intergenic
AATGATGAAACTGGAACTAA+AGG 0.526148 1_2:+4039519 None:intergenic
TTTACTTCCTTTCTCTCCCA+CGG 0.533498 1_2:+4042159 None:intergenic
CTTTAAGAAGCTAACTAAGA+AGG 0.537412 1_2:-4036772 Msa0050280:CDS
CAGAAGAAAGAAAACAATCA+TGG 0.539787 1_2:-4041658 Msa0050280:exon
AGAGATTACCCCTGAAGAAG+AGG 0.541074 1_2:-4036823 Msa0050280:CDS
GAGTTTCCATCCATGGCAAA+GGG 0.541096 1_2:-4036896 Msa0050280:CDS
TTCCAGATCTCCCTTTGCCA+TGG 0.541903 1_2:+4036886 None:intergenic
TAGGCATTTGGAACTAGTCT+CGG 0.552601 1_2:+4036364 None:intergenic
CAGGAGTGGTCTCAATAAGC+TGG 0.554575 1_2:+4036730 None:intergenic
TGTATTTCAGAGTCCAAAGA+AGG 0.555548 1_2:-4037536 Msa0050280:intron
AAGAAGAGGCACAAATTGCT+AGG 0.562985 1_2:-4036809 Msa0050280:CDS
CAAACGCTTCTCACAATCAT+GGG 0.566009 1_2:-4037074 Msa0050280:CDS
AGAGTTTCCATCCATGGCAA+AGG 0.569182 1_2:-4036897 Msa0050280:CDS
GCGCTACTTTCTCAGTCAAG+TGG 0.577032 1_2:+4042189 None:intergenic
GAGTCCAAAGAAGGTCAACT+TGG 0.587341 1_2:-4037527 Msa0050280:CDS
TAGGTCAGTTACAGAGGCAA+TGG 0.588340 1_2:-4041416 Msa0050280:CDS
TCATCATTCGGTAGTTCACA+AGG 0.588860 1_2:-4039504 Msa0050280:CDS
ATTGTGAGAAGCGTTTGCTC+GGG 0.592593 1_2:+4037080 None:intergenic
ATTGAGACCACTCCTGTTTG+GGG 0.595488 1_2:-4036723 Msa0050280:CDS
TCATGCACAGACCAGAATGT+AGG 0.597465 1_2:-4036863 Msa0050280:CDS
AACGAGAGTGATAAAGTGCA+AGG 0.597474 1_2:+4041556 None:intergenic
TAAGAAGCTAACTAAGAAGG+AGG 0.597695 1_2:-4036769 Msa0050280:CDS
TCTCGTTCTTCTCTTTCACA+AGG 0.601562 1_2:-4041540 Msa0050280:intron
AATTTGTGCCTCTTCTTCAG+GGG 0.603280 1_2:+4036815 None:intergenic
GGCACAAATTGCTAGGCTGA+AGG 0.607782 1_2:-4036802 Msa0050280:CDS
GTGGTCTCAATAAGCTGGTG+TGG 0.608149 1_2:+4036735 None:intergenic
AAGAAGCTAACTAAGAAGGA+GGG 0.617043 1_2:-4036768 Msa0050280:CDS
AGAAAACAATCATGGTGCAG+TGG 0.621743 1_2:-4041650 Msa0050280:exon
GTATCGTAGGTCAGTTACAG+AGG 0.631962 1_2:-4041422 Msa0050280:intron
AAGGTGTGCCAAGTATCTCA+AGG 0.633194 1_2:-4041389 Msa0050280:CDS
AAACACGAGTGGTCTTGTGA+TGG 0.636084 1_2:+4036634 None:intergenic
AAAGTAGCGCCGAATAACCG+TGG 0.638286 1_2:-4042176 Msa0050280:five_prime_UTR
AGGATCGAAGGTGAGAGTGT+GGG 0.648556 1_2:-4042216 None:intergenic
AGTTGCAAGTGTTAGTAAAG+CGG 0.658625 1_2:-4037459 Msa0050280:CDS
AAGTAGCGCCGAATAACCGT+GGG 0.659888 1_2:-4042175 Msa0050280:five_prime_UTR
AAATATTACCAACAATTAGG+CGG 0.662377 1_2:+4037040 None:intergenic
TCATTCGGTAGTTCACAAGG+TGG 0.716070 1_2:-4039501 Msa0050280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAAAAATATCAAAAT+GGG + chr1_2:4036976-4036995 None:intergenic 10.0%
!! AAAACTAAAAAATATCAAAA+TGG + chr1_2:4036977-4036996 None:intergenic 10.0%
!! AAAAGTAATTAATATTGTAT+TGG - chr1_2:4040117-4040136 Msa0050280:intron 10.0%
!! AAAAACAAAAAAAAAGAAAA+GGG + chr1_2:4041183-4041202 None:intergenic 10.0%
!! CAAAAAAAAAAATGTGTTTA+GGG + chr1_2:4036621-4036640 None:intergenic 15.0%
!!! GAAAAATGAGATTTTTTTTT+TGG - chr1_2:4036656-4036675 Msa0050280:CDS 15.0%
!! TAAAATAGGTTAAGATTATT+TGG - chr1_2:4038396-4038415 Msa0050280:intron 15.0%
!!! ATTGTTTGTTAAATTGTTTA+TGG - chr1_2:4038498-4038517 Msa0050280:intron 15.0%
!!! TTGTTTGTTAAATTGTTTAT+GGG - chr1_2:4038499-4038518 Msa0050280:intron 15.0%
!! AATATTAAAGAAAATAAAGC+AGG - chr1_2:4039040-4039059 Msa0050280:intron 15.0%
!!! ATGGTTTTCATATAATAAAT+AGG - chr1_2:4039292-4039311 Msa0050280:intron 15.0%
!!! TGGTTTTCATATAATAAATA+GGG - chr1_2:4039293-4039312 Msa0050280:intron 15.0%
!! AAATAAAAGAATTTACATCT+TGG - chr1_2:4039681-4039700 Msa0050280:intron 15.0%
!! AATAAAAGAATTTACATCTT+GGG - chr1_2:4039682-4039701 Msa0050280:intron 15.0%
!! CTAATTTATACCTATATAAA+GGG + chr1_2:4039747-4039766 None:intergenic 15.0%
!! CTTTATATAGGTATAAATTA+GGG - chr1_2:4039746-4039765 Msa0050280:intron 15.0%
!! TAAGAAAAATGTATAAATGA+AGG - chr1_2:4039969-4039988 Msa0050280:intron 15.0%
!! AGTATTAATTAGAGTTATAA+AGG - chr1_2:4040091-4040110 Msa0050280:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG - chr1_2:4040092-4040111 Msa0050280:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG - chr1_2:4040093-4040112 Msa0050280:intron 15.0%
!! ACTAAATCTAAATTAATTGA+AGG - chr1_2:4040298-4040317 Msa0050280:intron 15.0%
!! CTAAATCTAAATTAATTGAA+GGG - chr1_2:4040299-4040318 Msa0050280:intron 15.0%
!! CAAAAACAAAAAAAAAGAAA+AGG + chr1_2:4041184-4041203 None:intergenic 15.0%
!! AAAAAATATTACCAACAATT+AGG + chr1_2:4041439-4041458 None:intergenic 15.0%
!! AAAATTCTAATACATAATCT+AGG + chr1_2:4042131-4042150 None:intergenic 15.0%
!!! AAATTTTATTATTTGCAACA+AGG + chr1_2:4042160-4042179 None:intergenic 15.0%
!! TAAAAATGAGGTCAATAAAT+GGG + chr1_2:4036512-4036531 None:intergenic 20.0%
!! ATAAAAATGAGGTCAATAAA+TGG + chr1_2:4036513-4036532 None:intergenic 20.0%
!! GCAAAAAAAAAAATGTGTTT+AGG + chr1_2:4036622-4036641 None:intergenic 20.0%
!!! TTTTTTGCCTTTGTTAAATT+CGG - chr1_2:4036634-4036653 Msa0050280:CDS 20.0%
!! AATATACCTGATATTGAAAA+CGG + chr1_2:4037121-4037140 None:intergenic 20.0%
!! ATATAATAACAATGTAGTGT+AGG - chr1_2:4037277-4037296 Msa0050280:intron 20.0%
!!! AAGACTGGTTAAAATTAATT+CGG + chr1_2:4037484-4037503 None:intergenic 20.0%
!!! TTATTTTCAAACATTTGTAC+AGG + chr1_2:4037571-4037590 None:intergenic 20.0%
!! TGTACAAATGTTTGAAAATA+AGG - chr1_2:4037570-4037589 Msa0050280:intron 20.0%
!!! ATTATGTGTTATTCTATTTC+AGG - chr1_2:4038872-4038891 Msa0050280:intron 20.0%
!!! TTATGTGTTATTCTATTTCA+GGG - chr1_2:4038873-4038892 Msa0050280:intron 20.0%
!! AAATAAGAAAGCTATTACTA+AGG - chr1_2:4039001-4039020 Msa0050280:intron 20.0%
!!! TTACATTCAATTTTACACTA+TGG - chr1_2:4039139-4039158 Msa0050280:intron 20.0%
!!! TACATTCAATTTTACACTAT+GGG - chr1_2:4039140-4039159 Msa0050280:intron 20.0%
!! TCATCATTTAATGATTTAGA+TGG - chr1_2:4039333-4039352 Msa0050280:intron 20.0%
!! AAGTTAAAGATTACATAAAG+TGG + chr1_2:4039370-4039389 None:intergenic 20.0%
!!! AAAAATTTAGCTTGAAGTTT+TGG - chr1_2:4039475-4039494 Msa0050280:CDS 20.0%
!! CCTAATTTATACCTATATAA+AGG + chr1_2:4039748-4039767 None:intergenic 20.0%
!! CCTTTATATAGGTATAAATT+AGG - chr1_2:4039745-4039764 Msa0050280:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG - chr1_2:4040056-4040075 Msa0050280:intron 20.0%
!!! CATTTTTTTTTTGTTGCAAT+TGG - chr1_2:4040168-4040187 Msa0050280:intron 20.0%
!! AAATTAATTGAAGGGATATT+AGG - chr1_2:4040307-4040326 Msa0050280:intron 20.0%
!! AATTAATTGAAGGGATATTA+GGG - chr1_2:4040308-4040327 Msa0050280:intron 20.0%
!! AACAAACAAGTTATAATTGT+TGG + chr1_2:4040391-4040410 None:intergenic 20.0%
!! GAACATCTTGAATTAAAAAA+TGG - chr1_2:4040432-4040451 Msa0050280:intron 20.0%
!!! AAAGTCTATTTGATGATTAT+AGG + chr1_2:4040753-4040772 None:intergenic 20.0%
!! AATTTATGGTTTATGTTTCA+AGG - chr1_2:4040887-4040906 Msa0050280:intron 20.0%
!! ATTTATGGTTTATGTTTCAA+GGG - chr1_2:4040888-4040907 Msa0050280:intron 20.0%
!!! TTTTTGATTTCAATTGAAGA+AGG - chr1_2:4041288-4041307 Msa0050280:intron 20.0%
!! GTTATTCTATTCTTCTTTAT+AGG - chr1_2:4041310-4041329 Msa0050280:intron 20.0%
!!! TAAAGTTTTATTCAAATTGC+AGG - chr1_2:4041358-4041377 Msa0050280:intron 20.0%
!! ATGAAACTTGCAATTAAATA+AGG + chr1_2:4041997-4042016 None:intergenic 20.0%
!! TTATTTAATTGCAAGTTTCA+TGG - chr1_2:4041996-4042015 Msa0050280:intron 20.0%
!! CATTTTTCCGAATTTAACAA+AGG + chr1_2:4036644-4036663 None:intergenic 25.0%
!! GATATGGTTTTTATGAATCA+TGG - chr1_2:4036701-4036720 Msa0050280:CDS 25.0%
! AAGAAGCTCTTAAAATTTGT+AGG - chr1_2:4036732-4036751 Msa0050280:CDS 25.0%
! AGAAGCTCTTAAAATTTGTA+GGG - chr1_2:4036733-4036752 Msa0050280:CDS 25.0%
!! ACAAGTTATTCAAGTTTGTA+AGG - chr1_2:4037003-4037022 Msa0050280:intron 25.0%
!! CAAGTTATTCAAGTTTGTAA+GGG - chr1_2:4037004-4037023 Msa0050280:intron 25.0%
! GCTATACTCTATTTAATAGA+AGG - chr1_2:4037238-4037257 Msa0050280:intron 25.0%
!! TAATCAGTGTTGAAAATCAT+GGG + chr1_2:4037341-4037360 None:intergenic 25.0%
!! TGGTAACATCAAATCAATTT+TGG + chr1_2:4037425-4037444 None:intergenic 25.0%
! CTTAACAAATTATTCACCAA+TGG - chr1_2:4037501-4037520 Msa0050280:CDS 25.0%
!! AAACGTTTTCTCAAAGTAAA+TGG - chr1_2:4037667-4037686 Msa0050280:intron 25.0%
!! AACGTTTTCTCAAAGTAAAT+GGG - chr1_2:4037668-4037687 Msa0050280:intron 25.0%
!! TGTTTCTTTTCTGTGAATTA+AGG + chr1_2:4037742-4037761 None:intergenic 25.0%
! CAAATCGACTGAAATAAATA+AGG + chr1_2:4038063-4038082 None:intergenic 25.0%
! TAAAGAAAGAATACTCTTGA+TGG + chr1_2:4038203-4038222 None:intergenic 25.0%
! GTATTCTTTCTTTATAAGTG+TGG - chr1_2:4038209-4038228 Msa0050280:intron 25.0%
! ATGAAAGATCAACATATTCT+AGG + chr1_2:4038263-4038282 None:intergenic 25.0%
! TTACTAAAGAAACTACTAGA+AGG + chr1_2:4038307-4038326 None:intergenic 25.0%
! AAGGTTTGAACAAGTAAAAT+AGG - chr1_2:4038382-4038401 Msa0050280:intron 25.0%
! AATTGTTTATGGGAACATTA+AGG - chr1_2:4038509-4038528 Msa0050280:intron 25.0%
! ATCATAAAGACCAAAAAAAC+AGG + chr1_2:4038687-4038706 None:intergenic 25.0%
! AGATATAATAACACTAACAC+AGG + chr1_2:4038795-4038814 None:intergenic 25.0%
!!! AGATGAATTTTTTAGCAACT+GGG + chr1_2:4038913-4038932 None:intergenic 25.0%
! TAGTCCAGAAAAATTGATAA+TGG - chr1_2:4039200-4039219 Msa0050280:intron 25.0%
!! CATTCCATTATCAATTTTTC+TGG + chr1_2:4039207-4039226 None:intergenic 25.0%
!! ATGTGCATTGATGTTAATTA+TGG - chr1_2:4039273-4039292 Msa0050280:intron 25.0%
! CATTCAAGAAAAGCAAAAAA+AGG + chr1_2:4039428-4039447 None:intergenic 25.0%
! ATTTACATCTTGGGTTAAAT+TGG - chr1_2:4039691-4039710 Msa0050280:intron 25.0%
! TATATAGGTATAAATTAGGG+TGG - chr1_2:4039749-4039768 Msa0050280:intron 25.0%
! ATATAGGTATAAATTAGGGT+GGG - chr1_2:4039750-4039769 Msa0050280:intron 25.0%
! TGCAATTCACTCAATAAATT+AGG - chr1_2:4039776-4039795 Msa0050280:intron 25.0%
! GCAATTCACTCAATAAATTA+GGG - chr1_2:4039777-4039796 Msa0050280:intron 25.0%
! CAATTCACTCAATAAATTAG+GGG - chr1_2:4039778-4039797 Msa0050280:intron 25.0%
! AAGTGAGAGGATTTAATATA+GGG + chr1_2:4039812-4039831 None:intergenic 25.0%
! AAAGTGAGAGGATTTAATAT+AGG + chr1_2:4039813-4039832 None:intergenic 25.0%
!! TAAGTGATTTTGTTGAGTAT+TGG - chr1_2:4040009-4040028 Msa0050280:intron 25.0%
! CAAAGTGGAATATATTGAAT+TGG - chr1_2:4040055-4040074 Msa0050280:intron 25.0%
! TATTGTATTGGAAAGTGAAA+TGG - chr1_2:4040129-4040148 Msa0050280:intron 25.0%
!!! TTCAATAACACTTTTTCTCA+TGG + chr1_2:4040276-4040295 None:intergenic 25.0%
!!! TTGTTGTTTATATTTGAGAC+TGG - chr1_2:4040406-4040425 Msa0050280:intron 25.0%
! GTTAGCACTTTAAATAAATG+AGG + chr1_2:4040526-4040545 None:intergenic 25.0%
! TATAGTAGAAAGAGTTGAAA+GGG + chr1_2:4040659-4040678 None:intergenic 25.0%
!!! TTTTGTTTTTGATTTCGAGT+TGG - chr1_2:4041193-4041212 Msa0050280:intron 25.0%
!!! TTTGTTTTTGATTTCGAGTT+GGG - chr1_2:4041194-4041213 Msa0050280:intron 25.0%
! AAATATTACCAACAATTAGG+CGG + chr1_2:4041436-4041455 None:intergenic 25.0%
!!! TACGGATAGATTTGTTTTTT+CGG + chr1_2:4041920-4041939 None:intergenic 25.0%
! AAAAAACAAATCTATCCGTA+GGG - chr1_2:4041920-4041939 Msa0050280:intron 25.0%
!! CATGGTTTGATTTATGTTTA+TGG - chr1_2:4042014-4042033 Msa0050280:intron 25.0%
! TAATACATAATCTAGGCATT+TGG + chr1_2:4042124-4042143 None:intergenic 25.0%
!! ATTTTGTACTTAACCATGAT+CGG - chr1_2:4042176-4042195 Msa0050280:five_prime_UTR 25.0%
TTTGATCAAACACTTTGTGT+GGG + chr1_2:4036473-4036492 None:intergenic 30.0%
ATTTGATCAAACACTTTGTG+TGG + chr1_2:4036474-4036493 None:intergenic 30.0%
!! AATGGGCATTGATAAAAATG+AGG + chr1_2:4036524-4036543 None:intergenic 30.0%
ATAATTGGATTCAGAGCAAT+GGG + chr1_2:4036541-4036560 None:intergenic 30.0%
AATAATTGGATTCAGAGCAA+TGG + chr1_2:4036542-4036561 None:intergenic 30.0%
GTTCAACAGAACTCAATAAT+TGG + chr1_2:4036556-4036575 None:intergenic 30.0%
! GTTTTTATGAATCATGGAGT+GGG - chr1_2:4036707-4036726 Msa0050280:CDS 30.0%
CAGAAGAAAGAAAACAATCA+TGG - chr1_2:4036815-4036834 Msa0050280:CDS 30.0%
TATGAATGCAACGAAGAATA+GGG + chr1_2:4036863-4036882 None:intergenic 30.0%
TTATGAATGCAACGAAGAAT+AGG + chr1_2:4036864-4036883 None:intergenic 30.0%
TATTCTTCGTTGCATTCATA+AGG - chr1_2:4036863-4036882 Msa0050280:CDS 30.0%
ATTCTTCGTTGCATTCATAA+GGG - chr1_2:4036864-4036883 Msa0050280:CDS 30.0%
! TTCAAGTTTGTAAGGGTTTA+TGG - chr1_2:4037011-4037030 Msa0050280:intron 30.0%
TCAAGTTTGTAAGGGTTTAT+GGG - chr1_2:4037012-4037031 Msa0050280:intron 30.0%
CCTACGATACCAAAAAAAAA+CGG + chr1_2:4037041-4037060 None:intergenic 30.0%
TATTGAAAACGGTGATCAAA+AGG + chr1_2:4037110-4037129 None:intergenic 30.0%
AATAGAGTATAGCTGAACAA+TGG + chr1_2:4037231-4037250 None:intergenic 30.0%
! CTAATCAGTGTTGAAAATCA+TGG + chr1_2:4037342-4037361 None:intergenic 30.0%
! ACTGATTAGTTCACAAGTTT+GGG - chr1_2:4037353-4037372 Msa0050280:intron 30.0%
!! GGTGAATAATTTGTTAAGAC+TGG + chr1_2:4037499-4037518 None:intergenic 30.0%
!! ACTTTGAGAAAACGTTTTCT+AGG + chr1_2:4037664-4037683 None:intergenic 30.0%
AGCACTTTCACTTAATCTAT+AGG + chr1_2:4037708-4037727 None:intergenic 30.0%
!!! TAAGTGAAAGTGCTTTTGAT+AGG - chr1_2:4037714-4037733 Msa0050280:intron 30.0%
AGAGAAATATCTCATATCTG+AGG + chr1_2:4037839-4037858 None:intergenic 30.0%
TTATTCAGATACAAGCCTTA+TGG + chr1_2:4037873-4037892 None:intergenic 30.0%
TGGGAGTTATATAAAGGATA+GGG + chr1_2:4037920-4037939 None:intergenic 30.0%
ATGGGAGTTATATAAAGGAT+AGG + chr1_2:4037921-4037940 None:intergenic 30.0%
GAAGAATGGGAGTTATATAA+AGG + chr1_2:4037926-4037945 None:intergenic 30.0%
!! CTAGTTTGTTAGAGAAGAAT+GGG + chr1_2:4037939-4037958 None:intergenic 30.0%
!! GTTGGTTATATTTGATGATG+TGG + chr1_2:4037962-4037981 None:intergenic 30.0%
!!! TCCTATTTAGCACGTTTTTT+GGG - chr1_2:4037984-4038003 Msa0050280:intron 30.0%
AATGTTCACTAAATTGCTTG+AGG + chr1_2:4038177-4038196 None:intergenic 30.0%
TTCTTTATAAGTGTGGTCTA+AGG - chr1_2:4038216-4038235 Msa0050280:intron 30.0%
ATATGTTGATCTTTCATGCT+AGG - chr1_2:4038266-4038285 Msa0050280:intron 30.0%
!! AAGATTGTGATTTGGTTAGT+TGG + chr1_2:4038759-4038778 None:intergenic 30.0%
AACTAACCAAATCACAATCT+TGG - chr1_2:4038758-4038777 Msa0050280:intron 30.0%
ACTAACCAAATCACAATCTT+GGG - chr1_2:4038759-4038778 Msa0050280:intron 30.0%
!!! CAGATGAATTTTTTAGCAAC+TGG + chr1_2:4038914-4038933 None:intergenic 30.0%
GTTGCTAAAAAATTCATCTG+AGG - chr1_2:4038914-4038933 Msa0050280:intron 30.0%
AATGATGAAACTGGAACTAA+AGG + chr1_2:4038957-4038976 None:intergenic 30.0%
TTAGTTCCAGTTTCATCATT+CGG - chr1_2:4038957-4038976 Msa0050280:intron 30.0%
! GGTTTTCTTATATGCATGAT+TGG - chr1_2:4039105-4039124 Msa0050280:intron 30.0%
! ATAAAGGGAATACCAAGTTT+TGG + chr1_2:4039732-4039751 None:intergenic 30.0%
ACTTGGTATTCCCTTTATAT+AGG - chr1_2:4039734-4039753 Msa0050280:intron 30.0%
! ATATGTGTGAAATGAGCTTT+TGG + chr1_2:4039949-4039968 None:intergenic 30.0%
!! TGAAATGGCTCAGTTATTTT+AGG - chr1_2:4040144-4040163 Msa0050280:intron 30.0%
! TTGTTTATATTTGAGACTGG+AGG - chr1_2:4040409-4040428 Msa0050280:intron 30.0%
! TGTTTATATTTGAGACTGGA+GGG - chr1_2:4040410-4040429 Msa0050280:intron 30.0%
CACTTTAAATAAATGAGGCT+AGG + chr1_2:4040521-4040540 None:intergenic 30.0%
GTATAGTAGAAAGAGTTGAA+AGG + chr1_2:4040660-4040679 None:intergenic 30.0%
!! CTACTATACTCCTTTGAAAT+AGG - chr1_2:4040671-4040690 Msa0050280:intron 30.0%
AATTGCTTTCTAAGTTCTTC+TGG - chr1_2:4041120-4041139 Msa0050280:intron 30.0%
ATTGCTTTCTAAGTTCTTCT+GGG - chr1_2:4041121-4041140 Msa0050280:intron 30.0%
CAAAAAAAAAGAAAAGGGCT+AGG + chr1_2:4041178-4041197 None:intergenic 30.0%
TCATCAGTAAAGAGAAAACA+AGG + chr1_2:4041498-4041517 None:intergenic 30.0%
!! TTTTCTCTTTACTGATGATG+CGG - chr1_2:4041500-4041519 Msa0050280:intron 30.0%
! CTTTAAGAAGCTAACTAAGA+AGG - chr1_2:4041701-4041720 Msa0050280:intron 30.0%
!!! GATGGCTAGATTTGTTTTTT+CGG + chr1_2:4041824-4041843 None:intergenic 30.0%
GAAAAAACAAATCTATCCGT+AGG - chr1_2:4041919-4041938 Msa0050280:intron 30.0%
AAAAACAAATCTATCCGTAG+GGG - chr1_2:4041921-4041940 Msa0050280:intron 30.0%
AATGAGAATAATACCGATCA+TGG + chr1_2:4042192-4042211 None:intergenic 30.0%
!! ATTTTGAGTGTGTGATGCAA+TGG + chr1_2:4036594-4036613 None:intergenic 35.0%
! GGTTTTTATGAATCATGGAG+TGG - chr1_2:4036706-4036725 Msa0050280:CDS 35.0%
CAAGTTTGTAAGGGTTTATG+GGG - chr1_2:4037013-4037032 Msa0050280:intron 35.0%
!!! TATGGGGAACCGTTTTTTTT+TGG - chr1_2:4037029-4037048 Msa0050280:intron 35.0%
!!! CCGTTTTTTTTTGGTATCGT+AGG - chr1_2:4037038-4037057 Msa0050280:intron 35.0%
! TGATCACCGTTTTCAATATC+AGG - chr1_2:4037112-4037131 Msa0050280:intron 35.0%
CACCATCATCATTGTTGTAT+TGG - chr1_2:4037154-4037173 Msa0050280:intron 35.0%
GACCAATACAACAATGATGA+TGG + chr1_2:4037159-4037178 None:intergenic 35.0%
AGTCACTATTTGACAACACT+GGG + chr1_2:4037181-4037200 None:intergenic 35.0%
TAGTCACTATTTGACAACAC+TGG + chr1_2:4037182-4037201 None:intergenic 35.0%
! GGTTTGTTCAAAATCCACTA+CGG + chr1_2:4037304-4037323 None:intergenic 35.0%
! CACTGATTAGTTCACAAGTT+TGG - chr1_2:4037352-4037371 Msa0050280:intron 35.0%
! CTGATTAGTTCACAAGTTTG+GGG - chr1_2:4037354-4037373 Msa0050280:intron 35.0%
AATCACAGCTAGAACAAACA+TGG + chr1_2:4037445-4037464 None:intergenic 35.0%
! AGATACAAGCCTTATGGTTT+AGG + chr1_2:4037867-4037886 None:intergenic 35.0%
!! GCTAGTTTGTTAGAGAAGAA+TGG + chr1_2:4037940-4037959 None:intergenic 35.0%
!!! CTCCTATTTAGCACGTTTTT+TGG - chr1_2:4037983-4038002 Msa0050280:intron 35.0%
!!! CCTATTTAGCACGTTTTTTG+GGG - chr1_2:4037985-4038004 Msa0050280:intron 35.0%
TTTCTTTAGTAAGCACCTTG+TGG - chr1_2:4038315-4038334 Msa0050280:intron 35.0%
! AAACCTTTTAACCCTATGTC+CGG + chr1_2:4038369-4038388 None:intergenic 35.0%
TATGGGAACATTAAGGTTGT+TGG - chr1_2:4038516-4038535 Msa0050280:intron 35.0%
CTTAGCTCATTCACTTGTAA+GGG - chr1_2:4038552-4038571 Msa0050280:intron 35.0%
AGTAGACATGCTGTTATTGT+AGG - chr1_2:4038592-4038611 Msa0050280:intron 35.0%
ATGGAAAGAAGCAAGAAGAA+AGG + chr1_2:4038654-4038673 None:intergenic 35.0%
! AAAAACAGGTTGACACAGTA+TGG + chr1_2:4038673-4038692 None:intergenic 35.0%
!!! ACTGTGTCAACCTGTTTTTT+TGG - chr1_2:4038674-4038693 Msa0050280:intron 35.0%
TGTAACCCAAGATTGTGATT+TGG + chr1_2:4038767-4038786 None:intergenic 35.0%
TTGAAATGCCTTATCTCTTC+AGG - chr1_2:4039064-4039083 Msa0050280:intron 35.0%
!! CAAGTTTTGGTGTAGCTTTT+TGG + chr1_2:4039719-4039738 None:intergenic 35.0%
CAAAAAGCTACACCAAAACT+TGG - chr1_2:4039717-4039736 Msa0050280:intron 35.0%
TTGCTTCTGATAAAAGTGAG+AGG + chr1_2:4039825-4039844 None:intergenic 35.0%
TTATCAGAAGCAACATGATG+AGG - chr1_2:4039832-4039851 Msa0050280:intron 35.0%
GTTATATATAGTACTCCCTC+TGG - chr1_2:4039861-4039880 Msa0050280:intron 35.0%
! TGCTTTTATATGAGACCAGA+GGG + chr1_2:4039879-4039898 None:intergenic 35.0%
CCACTTTGCATTTATGATAG+TGG + chr1_2:4040043-4040062 None:intergenic 35.0%
CCACTATCATAAATGCAAAG+TGG - chr1_2:4040040-4040059 Msa0050280:intron 35.0%
! TGCAATTGGCTCAGTTATTA+TGG - chr1_2:4040182-4040201 Msa0050280:intron 35.0%
! GCAATTGGCTCAGTTATTAT+GGG - chr1_2:4040183-4040202 Msa0050280:intron 35.0%
! TTTTCCAAACTATCCCTCAT+GGG - chr1_2:4040242-4040261 Msa0050280:intron 35.0%
AAGAACTTCAATGATCTGCT+TGG - chr1_2:4040471-4040490 Msa0050280:intron 35.0%
! AGAAAGAGTTGAAAGGGTAT+TGG + chr1_2:4040653-4040672 None:intergenic 35.0%
! TAGCTAGTCTCCTATTTCAA+AGG + chr1_2:4040684-4040703 None:intergenic 35.0%
GAATGGGATACAATCATGAA+AGG + chr1_2:4040804-4040823 None:intergenic 35.0%
TTCATGATTGTATCCCATTC+AGG - chr1_2:4040804-4040823 Msa0050280:intron 35.0%
!! TGCTCTGGAAACTCAATTTA+TGG - chr1_2:4040873-4040892 Msa0050280:intron 35.0%
TGTATTTCAGAGTCCAAAGA+AGG - chr1_2:4040937-4040956 Msa0050280:intron 35.0%
AGTTGCAAGTGTTAGTAAAG+CGG - chr1_2:4041014-4041033 Msa0050280:intron 35.0%
GGCTTCAAAAACTGTATATC+AGG - chr1_2:4041036-4041055 Msa0050280:intron 35.0%
GACAGAATAATAACTAGTGC+TGG + chr1_2:4041064-4041083 None:intergenic 35.0%
TTGCTTTCTAAGTTCTTCTG+GGG - chr1_2:4041122-4041141 Msa0050280:intron 35.0%
! TTGGGACTTTGTTAGTTTGA+AGG - chr1_2:4041212-4041231 Msa0050280:intron 35.0%
TAAGAAGCTAACTAAGAAGG+AGG - chr1_2:4041704-4041723 Msa0050280:intron 35.0%
AAGAAGCTAACTAAGAAGGA+GGG - chr1_2:4041705-4041724 Msa0050280:intron 35.0%
!!! TTATTTTTTCGTCCCCAAAC+AGG + chr1_2:4041765-4041784 None:intergenic 35.0%
!!! GACGGCTAGATTTGTTTTTT+CGG + chr1_2:4041947-4041966 None:intergenic 35.0%
GTTGAGAAATATGCAGACTA+AGG - chr1_2:4042079-4042098 Msa0050280:intron 35.0%
TTTACTTCCTTTCTCTCCCA+CGG + chr1_2:4036317-4036336 None:intergenic 40.0%
GAATCTTACTTACACTGCGT+TGG + chr1_2:4036396-4036415 None:intergenic 40.0%
TTGGTCCTGATTGACAAATC+TGG - chr1_2:4036675-4036694 Msa0050280:CDS 40.0%
TCCTGATTGACAAATCTGGA+GGG - chr1_2:4036679-4036698 Msa0050280:CDS 40.0%
TTGACAAATCTGGAGGGATA+TGG - chr1_2:4036685-4036704 Msa0050280:CDS 40.0%
AGAAAACAATCATGGTGCAG+TGG - chr1_2:4036823-4036842 Msa0050280:CDS 40.0%
AAGGTTTGTAGCCGAATGAT+TGG + chr1_2:4036901-4036920 None:intergenic 40.0%
AACGAGAGTGATAAAGTGCA+AGG + chr1_2:4036920-4036939 None:intergenic 40.0%
TCTCGTTCTTCTCTTTCACA+AGG - chr1_2:4036933-4036952 Msa0050280:CDS 40.0%
TTACAGAGGCAATGGTCAAA+AGG - chr1_2:4037065-4037084 Msa0050280:CDS 40.0%
TCAAAAGGCCTTGAGATACT+TGG + chr1_2:4037095-4037114 None:intergenic 40.0%
TCTCAAAGTAAACAGGCCAT+TGG + chr1_2:4037520-4037539 None:intergenic 40.0%
CGCAGTTTCTCAAAGTAAAC+AGG + chr1_2:4037527-4037546 None:intergenic 40.0%
! CTTTTGCTTTGGCGTTACAA+GGG + chr1_2:4037814-4037833 None:intergenic 40.0%
! TATCTGAGGAGCTTTTGCTT+TGG + chr1_2:4037825-4037844 None:intergenic 40.0%
AACGTGCTAAATAGGAGAGT+TGG + chr1_2:4037980-4037999 None:intergenic 40.0%
CCCCAAAAAACGTGCTAAAT+AGG + chr1_2:4037988-4038007 None:intergenic 40.0%
AACAAAAGCTGTCAGGTACT+GGG + chr1_2:4038023-4038042 None:intergenic 40.0%
CATTGAGAACAAAAGCTGTC+AGG + chr1_2:4038030-4038049 None:intergenic 40.0%
AAATTGCTTGAGGAAACCCT+CGG + chr1_2:4038167-4038186 None:intergenic 40.0%
! AGCACCTTGTGGATTGTATT+AGG - chr1_2:4038326-4038345 Msa0050280:intron 40.0%
! GCACCTTGTGGATTGTATTA+GGG - chr1_2:4038327-4038346 Msa0050280:intron 40.0%
CAACCCTAATACAATCCACA+AGG + chr1_2:4038333-4038352 None:intergenic 40.0%
GCTTAGCTCATTCACTTGTA+AGG - chr1_2:4038551-4038570 Msa0050280:intron 40.0%
GAACTACCGAATGATGAAAC+TGG + chr1_2:4038966-4038985 None:intergenic 40.0%
TCATCATTCGGTAGTTCACA+AGG - chr1_2:4038969-4038988 Msa0050280:intron 40.0%
ATCAAGAGCCTGAAGAGATA+AGG + chr1_2:4039075-4039094 None:intergenic 40.0%
TTATCTCTTCAGGCTCTTGA+TGG - chr1_2:4039074-4039093 Msa0050280:intron 40.0%
!!! AGGCTCTTGATGGATTGTTT+TGG - chr1_2:4039084-4039103 Msa0050280:intron 40.0%
AATTACACTAGCGTGCAAAC+AGG - chr1_2:4039391-4039410 Msa0050280:intron 40.0%
GTCGTGATAAAAGTCAACAG+AGG + chr1_2:4039455-4039474 None:intergenic 40.0%
!! CTGCTTTTATATGAGACCAG+AGG + chr1_2:4039880-4039899 None:intergenic 40.0%
!!! GCTTTTGGCTCAGTTAATCT+GGG + chr1_2:4039934-4039953 None:intergenic 40.0%
!!! AGCTTTTGGCTCAGTTAATC+TGG + chr1_2:4039935-4039954 None:intergenic 40.0%
TTGGCTCAGTTATTATGGGA+CGG - chr1_2:4040187-4040206 Msa0050280:intron 40.0%
! CTTTTCCAAACTATCCCTCA+TGG - chr1_2:4040241-4040260 Msa0050280:intron 40.0%
TAACATACTCGTAGTACTCC+TGG - chr1_2:4040542-4040561 Msa0050280:intron 40.0%
!! CACATTTTAGCCTCCATAAC+TGG - chr1_2:4040617-4040636 Msa0050280:intron 40.0%
TGGAATTGTACCAGTTATGG+AGG + chr1_2:4040630-4040649 None:intergenic 40.0%
TGGTGGAATTGTACCAGTTA+TGG + chr1_2:4040633-4040652 None:intergenic 40.0%
!! AAGAGTTGAAAGGGTATTGG+TGG + chr1_2:4040650-4040669 None:intergenic 40.0%
ACAAGCAGTTACACCTGAAT+GGG + chr1_2:4040820-4040839 None:intergenic 40.0%
TACAAGCAGTTACACCTGAA+TGG + chr1_2:4040821-4040840 None:intergenic 40.0%
AGTTTCCAGAGCAAGTACAA+GGG + chr1_2:4040866-4040885 None:intergenic 40.0%
GTTGCAAGTGTTAGTAAAGC+GGG - chr1_2:4041015-4041034 Msa0050280:intron 40.0%
AAAAAGAAAAGGGCTAGGAG+TGG + chr1_2:4041173-4041192 None:intergenic 40.0%
CAAACGCTTCTCACAATCAT+GGG - chr1_2:4041399-4041418 Msa0050280:CDS 40.0%
! TCTTACAGCTGAAGCATTTG+TGG - chr1_2:4041533-4041552 Msa0050280:intron 40.0%
! CTTACAGCTGAAGCATTTGT+GGG - chr1_2:4041534-4041553 Msa0050280:intron 40.0%
AAGAAGAGAGTTTCCATCCA+TGG - chr1_2:4041570-4041589 Msa0050280:CDS 40.0%
! ACAACAGTTAGCCTACATTC+TGG + chr1_2:4041624-4041643 None:intergenic 40.0%
AATTTGTGCCTCTTCTTCAG+GGG + chr1_2:4041661-4041680 None:intergenic 40.0%
CAATTTGTGCCTCTTCTTCA+GGG + chr1_2:4041662-4041681 None:intergenic 40.0%
! AAGAAGAGGCACAAATTGCT+AGG - chr1_2:4041664-4041683 Msa0050280:intron 40.0%
TTATTGAGACCACTCCTGTT+TGG - chr1_2:4041748-4041767 Msa0050280:intron 40.0%
TATTGAGACCACTCCTGTTT+GGG - chr1_2:4041749-4041768 Msa0050280:intron 40.0%
!!! TTGTTTTTTCGGTCCCAAAC+AGG + chr1_2:4041813-4041832 None:intergenic 40.0%
!!! TTTTTTGTCCCAAACACGAG+TGG + chr1_2:4041853-4041872 None:intergenic 40.0%
!!! TTGTTTTTTCGGCCCTTAAC+AGG + chr1_2:4041909-4041928 None:intergenic 40.0%
!!! ATTTGTTTTTTCGGCCCCTA+CGG + chr1_2:4041938-4041957 None:intergenic 40.0%
! TAGGCATTTGGAACTAGTCT+CGG + chr1_2:4042112-4042131 None:intergenic 40.0%
CTTTCTCTCCCACGGTTATT+CGG + chr1_2:4036309-4036328 None:intergenic 45.0%
AAACACTTTGTGTGGGTGTG+TGG + chr1_2:4036466-4036485 None:intergenic 45.0%
GTCCTGATTGACAAATCTGG+AGG - chr1_2:4036678-4036697 Msa0050280:CDS 45.0%
TCCCTCCAGATTTGTCAATC+AGG + chr1_2:4036683-4036702 None:intergenic 45.0%
TCGTTGCATTCATAAGGGAC+TGG - chr1_2:4036869-4036888 Msa0050280:CDS 45.0%
ACTGGAGTCTGCCAATCATT+CGG - chr1_2:4036887-4036906 Msa0050280:CDS 45.0%
GTATCGTAGGTCAGTTACAG+AGG - chr1_2:4037051-4037070 Msa0050280:CDS 45.0%
TAGGTCAGTTACAGAGGCAA+TGG - chr1_2:4037057-4037076 Msa0050280:CDS 45.0%
AAGGTGTGCCAAGTATCTCA+AGG - chr1_2:4037084-4037103 Msa0050280:CDS 45.0%
AATGTAGTGTAGGACCGTAG+TGG - chr1_2:4037287-4037306 Msa0050280:intron 45.0%
GTGTTGAAAATCATGGGTCG+TGG + chr1_2:4037335-4037354 None:intergenic 45.0%
! AGTTCACAAGTTTGGGGCAT+TGG - chr1_2:4037360-4037379 Msa0050280:intron 45.0%
! GCTTTTGCTTTGGCGTTACA+AGG + chr1_2:4037815-4037834 None:intergenic 45.0%
CTCTCTCTGCCTAAACCATA+AGG - chr1_2:4037855-4037874 Msa0050280:intron 45.0%
!!! TAGCACGTTTTTTGGGGCTT+AGG - chr1_2:4037991-4038010 Msa0050280:intron 45.0%
GAACAAAAGCTGTCAGGTAC+TGG + chr1_2:4038024-4038043 None:intergenic 45.0%
TTGATTGTGCATTTGTGCCG+AGG - chr1_2:4038147-4038166 Msa0050280:intron 45.0%
TGATTGTGCATTTGTGCCGA+GGG - chr1_2:4038148-4038167 Msa0050280:intron 45.0%
! CTTTTAACCCTATGTCCGGA+AGG + chr1_2:4038365-4038384 None:intergenic 45.0%
CTTCCGGACATAGGGTTAAA+AGG - chr1_2:4038363-4038382 Msa0050280:intron 45.0%
!!! GAGCTTTCCTTGCTGTTTTG+TGG - chr1_2:4038423-4038442 Msa0050280:intron 45.0%
!!! CTTTCCTTGCTGTTTTGTGG+TGG - chr1_2:4038426-4038445 Msa0050280:intron 45.0%
AGATCCACCACAAAACAGCA+AGG + chr1_2:4038433-4038452 None:intergenic 45.0%
!!! TTGCTGTTTTGTGGTGGATC+TGG - chr1_2:4038432-4038451 Msa0050280:intron 45.0%
!!! TGTTTTGTGGTGGATCTGGT+TGG - chr1_2:4038436-4038455 Msa0050280:intron 45.0%
AGCTCATTCACTTGTAAGGG+AGG - chr1_2:4038555-4038574 Msa0050280:intron 45.0%
!!! TAAGGGAGGAGTTGCTGTTT+TGG - chr1_2:4038569-4038588 Msa0050280:intron 45.0%
TCATTCGGTAGTTCACAAGG+TGG - chr1_2:4038972-4038991 Msa0050280:intron 45.0%
CAGAAGCAACATGATGAGGA+AGG - chr1_2:4039836-4039855 Msa0050280:intron 45.0%
TTGGCTCAGTTAATCTGGGA+CGG + chr1_2:4039930-4039949 None:intergenic 45.0%
CTCAGTTATTATGGGACGGA+GGG - chr1_2:4040191-4040210 Msa0050280:intron 45.0%
AGTTCCCATGAGGGATAGTT+TGG + chr1_2:4040249-4040268 None:intergenic 45.0%
CATGGAACAAGTTCCCATGA+GGG + chr1_2:4040258-4040277 None:intergenic 45.0%
TCATGGAACAAGTTCCCATG+AGG + chr1_2:4040259-4040278 None:intergenic 45.0%
AGAGTCTGTGCATAACCAAC+CGG + chr1_2:4040586-4040605 None:intergenic 45.0%
TGTATCCCTTGTACTTGCTC+TGG - chr1_2:4040858-4040877 Msa0050280:intron 45.0%
GAGTTTCCAGAGCAAGTACA+AGG + chr1_2:4040867-4040886 None:intergenic 45.0%
GAGTCCAAAGAAGGTCAACT+TGG - chr1_2:4040946-4040965 Msa0050280:intron 45.0%
! GCAACCAAGTTGACCTTCTT+TGG + chr1_2:4040953-4040972 None:intergenic 45.0%
!! TCTAAGTTCTTCTGGGGCAT+TGG - chr1_2:4041128-4041147 Msa0050280:intron 45.0%
AAGGGCTAGGAGTGGAAAAA+GGG + chr1_2:4041165-4041184 None:intergenic 45.0%
AAAGGGCTAGGAGTGGAAAA+AGG + chr1_2:4041166-4041185 None:intergenic 45.0%
!! ATTGTGAGAAGCGTTTGCTC+GGG + chr1_2:4041396-4041415 None:intergenic 45.0%
!! GATTGTGAGAAGCGTTTGCT+CGG + chr1_2:4041397-4041416 None:intergenic 45.0%
GCAAACGCTTCTCACAATCA+TGG - chr1_2:4041398-4041417 Msa0050280:CDS 45.0%
! AGCTGAAGCATTTGTGGGAA+AGG - chr1_2:4041539-4041558 Msa0050280:intron 45.0%
! GCTGAAGCATTTGTGGGAAA+GGG - chr1_2:4041540-4041559 Msa0050280:intron 45.0%
AGAGTTTCCATCCATGGCAA+AGG - chr1_2:4041576-4041595 Msa0050280:CDS 45.0%
GAGTTTCCATCCATGGCAAA+GGG - chr1_2:4041577-4041596 Msa0050280:CDS 45.0%
TCATGCACAGACCAGAATGT+AGG - chr1_2:4041610-4041629 Msa0050280:CDS 45.0%
AGAGATTACCCCTGAAGAAG+AGG - chr1_2:4041650-4041669 Msa0050280:exon 45.0%
GCAATTTGTGCCTCTTCTTC+AGG + chr1_2:4041663-4041682 None:intergenic 45.0%
ATTGAGACCACTCCTGTTTG+GGG - chr1_2:4041750-4041769 Msa0050280:intron 45.0%
AAAACGAGACCACTCCTGTT+TGG - chr1_2:4041796-4041815 Msa0050280:intron 45.0%
AAACGAGACCACTCCTGTTT+GGG - chr1_2:4041797-4041816 Msa0050280:intron 45.0%
!! AAACACGAGTGGTCTTGTGA+TGG + chr1_2:4041842-4041861 None:intergenic 45.0%
ATCACAAGACCACTCGTGTT+TGG - chr1_2:4041841-4041860 Msa0050280:intron 45.0%
TCACAAGACCACTCGTGTTT+GGG - chr1_2:4041842-4041861 Msa0050280:intron 45.0%
AAACGAGACCACACCTGTTA+AGG - chr1_2:4041893-4041912 Msa0050280:intron 45.0%
AACGAGACCACACCTGTTAA+GGG - chr1_2:4041894-4041913 Msa0050280:intron 45.0%
!! CTGCAGCACTTGAGTTTTGA+CGG + chr1_2:4041965-4041984 None:intergenic 45.0%
!! ATTTAATCAAAAAATAAATT+AGG - chr1_2:4039581-4039600 Msa0050280:CDS 5.0%
!!! CAAAATTAAATTTTTTAATT+AGG - chr1_2:4039639-4039658 Msa0050280:intron 5.0%
! GCGCTACTTTCTCAGTCAAG+TGG + chr1_2:4036287-4036306 None:intergenic 50.0%
! AAAGTAGCGCCGAATAACCG+TGG - chr1_2:4036297-4036316 Msa0050280:three_prime_UTR 50.0%
! AAGTAGCGCCGAATAACCGT+GGG - chr1_2:4036298-4036317 Msa0050280:three_prime_UTR 50.0%
CGAATAACCGTGGGAGAGAA+AGG - chr1_2:4036307-4036326 Msa0050280:three_prime_UTR 50.0%
TCATGGGTCGTGGAAAGTAG+CGG + chr1_2:4037325-4037344 None:intergenic 50.0%
!! GTTTGGGGCATTGGTTTAGC+TGG - chr1_2:4037369-4037388 Msa0050280:intron 50.0%
!! GGGCATTGGTTTAGCTGGAA+GGG - chr1_2:4037374-4037393 Msa0050280:intron 50.0%
!! CATTGGTTTAGCTGGAAGGG+AGG - chr1_2:4037377-4037396 Msa0050280:intron 50.0%
GGATAGGGATAGCAAGAGAG+AGG + chr1_2:4037905-4037924 None:intergenic 50.0%
!! AGCTGTCAGGTACTGGGTTT+GGG + chr1_2:4038017-4038036 None:intergenic 50.0%
!! AAGCTGTCAGGTACTGGGTT+TGG + chr1_2:4038018-4038037 None:intergenic 50.0%
TCTTGAGCCTTCCGGACATA+GGG - chr1_2:4038355-4038374 Msa0050280:intron 50.0%
ATCTGGTTGGAGTCTTGGAG+AGG - chr1_2:4038449-4038468 Msa0050280:intron 50.0%
GGAACTAAAGGCGACGAAAC+AGG + chr1_2:4038945-4038964 None:intergenic 50.0%
ACTAGCGTGCAAACAGGCAT+TGG - chr1_2:4039397-4039416 Msa0050280:intron 50.0%
CTAGCGTGCAAACAGGCATT+GGG - chr1_2:4039398-4039417 Msa0050280:intron 50.0%
! CTCAGTTAATCTGGGACGGA+GGG + chr1_2:4039926-4039945 None:intergenic 50.0%
GCTCAGTTATTATGGGACGG+AGG - chr1_2:4040190-4040209 Msa0050280:intron 50.0%
! GGTCAACTTGGTTGCTGCTT+TGG - chr1_2:4040958-4040977 Msa0050280:intron 50.0%
!! TTGGTTGCTGCTTTGGTTCG+TGG - chr1_2:4040965-4040984 Msa0050280:intron 50.0%
CGCTTCTCACAATCATGGGT+TGG - chr1_2:4041403-4041422 Msa0050280:CDS 50.0%
GATGCAGACCGCCTAATTGT+TGG - chr1_2:4041425-4041444 Msa0050280:intron 50.0%
AGATCTCCCTTTGCCATGGA+TGG + chr1_2:4041586-4041605 None:intergenic 50.0%
ATCCATGGCAAAGGGAGATC+TGG - chr1_2:4041585-4041604 Msa0050280:CDS 50.0%
TTCCAGATCTCCCTTTGCCA+TGG + chr1_2:4041590-4041609 None:intergenic 50.0%
GGCACAAATTGCTAGGCTGA+AGG - chr1_2:4041671-4041690 Msa0050280:intron 50.0%
GTGGTCTCAATAAGCTGGTG+TGG + chr1_2:4041741-4041760 None:intergenic 50.0%
CAGGAGTGGTCTCAATAAGC+TGG + chr1_2:4041746-4041765 None:intergenic 50.0%
! TTTTCGTCCCCAAACAGGAG+TGG + chr1_2:4041760-4041779 None:intergenic 50.0%
! TTTTCGGTCCCAAACAGGAG+TGG + chr1_2:4041808-4041827 None:intergenic 50.0%
! CAGGTGTGGTCTCGTTTTGA+TGG + chr1_2:4041890-4041909 None:intergenic 50.0%
! TTTTCGGCCCTTAACAGGTG+TGG + chr1_2:4041904-4041923 None:intergenic 50.0%
CAATCATGGTGCAGTGGCAG+AGG - chr1_2:4036829-4036848 Msa0050280:CDS 55.0%
!! GGGGCATTGGTTTAGCTGGA+AGG - chr1_2:4037373-4037392 Msa0050280:intron 55.0%
GGGTTGTCTCTTGAGCCTTC+CGG - chr1_2:4038347-4038366 Msa0050280:intron 55.0%
CTCTTGAGCCTTCCGGACAT+AGG - chr1_2:4038354-4038373 Msa0050280:intron 55.0%
GGTGGATCTGGTTGGAGTCT+TGG - chr1_2:4038444-4038463 Msa0050280:intron 55.0%
! GCTCAGTTAATCTGGGACGG+AGG + chr1_2:4039927-4039946 None:intergenic 55.0%
GCATAACCAACCGGCACACA+AGG + chr1_2:4040577-4040596 None:intergenic 55.0%
CACACAAGGCAGGGAATGCC+AGG + chr1_2:4040563-4040582 None:intergenic 60.0%
GCATTCCCTGCCTTGTGTGC+CGG - chr1_2:4040564-4040583 Msa0050280:intron 60.0%
ACCAACCGGCACACAAGGCA+GGG + chr1_2:4040572-4040591 None:intergenic 60.0%
AACCAACCGGCACACAAGGC+AGG + chr1_2:4040573-4040592 None:intergenic 60.0%
! TCCCTGCCTTGTGTGCCGGT+TGG - chr1_2:4040568-4040587 Msa0050280:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4036266 4042229 4036266 ID=Msa0050280;Name=Msa0050280
chr1_2 mRNA 4036266 4042229 4036266 ID=Msa0050280-mRNA-1;Parent=Msa0050280;Name=Msa0050280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|0.83|0.71|7|237|330
chr1_2 exon 4036266 4036954 4036266 ID=Msa0050280-mRNA-1:exon:1031;Parent=Msa0050280-mRNA-1
chr1_2 exon 4037049 4037115 4037049 ID=Msa0050280-mRNA-1:exon:1030;Parent=Msa0050280-mRNA-1
chr1_2 exon 4037438 4037548 4037438 ID=Msa0050280-mRNA-1:exon:1029;Parent=Msa0050280-mRNA-1
chr1_2 exon 4039434 4039601 4039434 ID=Msa0050280-mRNA-1:exon:1028;Parent=Msa0050280-mRNA-1
chr1_2 exon 4041362 4041435 4041362 ID=Msa0050280-mRNA-1:exon:1027;Parent=Msa0050280-mRNA-1
chr1_2 exon 4041541 4041677 4041541 ID=Msa0050280-mRNA-1:exon:1026;Parent=Msa0050280-mRNA-1
chr1_2 exon 4042093 4042229 4042093 ID=Msa0050280-mRNA-1:exon:1025;Parent=Msa0050280-mRNA-1
chr1_2 five_prime_UTR 4042093 4042229 4042093 ID=Msa0050280-mRNA-1:five_prime_utr;Parent=Msa0050280-mRNA-1
chr1_2 five_prime_UTR 4041662 4041677 4041662 ID=Msa0050280-mRNA-1:five_prime_utr;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4041541 4041661 4041541 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4041362 4041435 4041362 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4039434 4039601 4039434 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4037438 4037548 4037438 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4037049 4037115 4037049 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 CDS 4036503 4036954 4036503 ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1
chr1_2 three_prime_UTR 4036266 4036502 4036266 ID=Msa0050280-mRNA-1:three_prime_utr;Parent=Msa0050280-mRNA-1
Gene Sequence

>Msa0050280

ATGGTGCAGTGGCAGAGGCATATTTTCCCTATTCTTCGTTGCATTCATAAGGGACTGGAGTCTGCCAATCATTCGGCTACAAACCTTGCACTTTATCACTCTCGTTCTTCTCTTTCACAAGGTCAGTTACAGAGGCAATGGTCAAAAGGTGTGCCAAGTATCTCAAGGCCTTTTGATCACCGTTTTCAATATCAGGGAATTTCAAGCTCTACCCAGTTGCTAAAAAATTCATCTGAGGAAGTACCTGTTTCGTCGCCTTTAGTTCCAGTTTCATCATTCGGTAGTTCACAAGGTGGAGAACAAAATAAGAAAGCTATTACTAAGGCAGATAAAGTTCAAGCAATATTAAAGAAAATAAAGCAGAGTCCAAAGAAGGTCAACTTGGTTGCTGCTTTGGTTCGTGGTATGCTTGTTAAAGATGCTTTGCTGCAGTTGCAAGTGTTAGTAAAGCGGGCTTCAAAAACTGTATATCAGGTTATTCATTCAGCCCGAGCAAACGCTTCTCACAATCATGGGTTGGATGCAGACCGCCTAATTGTTGCTGAAGCATTTGTGGGAAAGGGAGATTTTAAGAAGAGAGTTTCCATCCATGGCAAAGGGAGATCTGGAATCATGCACAGACCAGAATGTAGGCTAACTGTTGTACTAAGAGAGATTACCCCTGAAGAAGAGGCACAAATTGCTAGGCTGAAGGTTCACAACTTTAAGAAGCTAACTAAGAAGGAGGGAAGACTTGTGCCACACCAGCTTATTGAGACCACTCCTGTTTGGGGACGAAAAAATAAATCTAGCAGTCAAAACGAGACCACTCCTGTTTGGGACCGAAAAAACAAATCTAGCCATCACAAGACCACTCGTGTTTGGGACAAAAAAGAAACAAATCTAAGCCATCAAAACGAGACCACACCTGTTAAGGGCCGAAAAAACAAATCTATCCGTAGGGGCCGAAAAAACAAATCTAGCCGTCAAAACTCAAGTGCTGCAGTTGCATGA

Protein sequence

>Msa0050280

MVQWQRHIFPILRCIHKGLESANHSATNLALYHSRSSLSQGQLQRQWSKGVPSISRPFDHRFQYQGISSSTQLLKNSSEEVPVSSPLVPVSSFGSSQGGEQNKKAITKADKVQAILKKIKQSPKKVNLVAALVRGMLVKDALLQLQVLVKRASKTVYQVIHSARANASHNHGLDADRLIVAEAFVGKGDFKKRVSIHGKGRSGIMHRPECRLTVVLREITPEEEAQIARLKVHNFKKLTKKEGRLVPHQLIETTPVWGRKNKSSSQNETTPVWDRKNKSSHHKTTRVWDKKETNLSHQNETTPVKGRKNKSIRRGRKNKSSRQNSSAAVA*