Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050280 | XP_003589828.1 | 95.152 | 330 | 12 | 1 | 1 | 330 | 1 | 326 | 0.0 | 634 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050280 | sp|A6U864|RL22_SINMW | 47.458 | 118 | 62 | 0 | 108 | 225 | 11 | 128 | 9.06e-26 | 102 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050280 | G7IDE8 | 95.152 | 330 | 12 | 1 | 1 | 330 | 1 | 326 | 0.0 | 634 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0050280 | Msa0154680 | 0.951445 | 2.010802e-109 | -8.615850e-47 |
Msa0050280 | Msa1330410 | 0.809444 | 1.886173e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050280 | MtrunA17_Chr1g0165461 | 95.152 | 330 | 12 | 1 | 1 | 330 | 1 | 326 | 0.0 | 634 |
Msa0050280 | MtrunA17_Chr7g0263441 | 32.308 | 130 | 82 | 3 | 95 | 222 | 65 | 190 | 5.33e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050280 | AT4G28360.1 | 59.398 | 266 | 91 | 7 | 1 | 260 | 1 | 255 | 2.53e-95 | 284 |
Msa0050280 | AT1G52370.3 | 57.895 | 266 | 94 | 6 | 1 | 260 | 1 | 254 | 1.94e-86 | 261 |
Msa0050280 | AT1G52370.2 | 57.895 | 266 | 94 | 6 | 1 | 260 | 1 | 254 | 1.94e-86 | 261 |
Msa0050280 | AT1G52370.4 | 57.895 | 266 | 94 | 6 | 1 | 260 | 1 | 254 | 1.94e-86 | 261 |
Msa0050280 | AT1G52370.1 | 57.895 | 266 | 94 | 6 | 1 | 260 | 1 | 254 | 1.94e-86 | 261 |
Msa0050280 | ATCG00810.1 | 31.818 | 110 | 75 | 0 | 111 | 220 | 12 | 121 | 1.04e-13 | 68.6 |
Find 91 sgRNAs with CRISPR-Local
Find 394 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGGTTTGATTTATGTTTA+TGG | 0.148230 | 1_2:-4036459 | Msa0050280:three_prime_UTR |
GCAATTTGTGCCTCTTCTTC+AGG | 0.198947 | 1_2:+4036813 | None:intergenic |
GCAACCAAGTTGACCTTCTT+TGG | 0.202936 | 1_2:+4037523 | None:intergenic |
GGTCAACTTGGTTGCTGCTT+TGG | 0.281050 | 1_2:-4037515 | Msa0050280:CDS |
ATGAAACTTGCAATTAAATA+AGG | 0.304656 | 1_2:+4036479 | None:intergenic |
TATTGAGACCACTCCTGTTT+GGG | 0.305553 | 1_2:-4036724 | Msa0050280:CDS |
CTTTCTCTCCCACGGTTATT+CGG | 0.351256 | 1_2:+4042167 | None:intergenic |
TATTCTTCGTTGCATTCATA+AGG | 0.355668 | 1_2:-4041610 | Msa0050280:CDS |
AAACGAGACCACACCTGTTA+AGG | 0.357620 | 1_2:-4036580 | Msa0050280:CDS |
ATCACAAGACCACTCGTGTT+TGG | 0.368062 | 1_2:-4036632 | Msa0050280:CDS |
TAATACATAATCTAGGCATT+TGG | 0.370055 | 1_2:+4036352 | None:intergenic |
TTATTGAGACCACTCCTGTT+TGG | 0.371095 | 1_2:-4036725 | Msa0050280:CDS |
TTATTTAATTGCAAGTTTCA+TGG | 0.376631 | 1_2:-4036477 | Msa0050280:three_prime_UTR |
CAATTTGTGCCTCTTCTTCA+GGG | 0.384437 | 1_2:+4036814 | None:intergenic |
AAACGAGACCACTCCTGTTT+GGG | 0.392516 | 1_2:-4036676 | Msa0050280:CDS |
AAAACGAGACCACTCCTGTT+TGG | 0.395474 | 1_2:-4036677 | Msa0050280:CDS |
TCACAAGACCACTCGTGTTT+GGG | 0.406538 | 1_2:-4036631 | Msa0050280:CDS |
TTATGAATGCAACGAAGAAT+AGG | 0.408686 | 1_2:+4041612 | None:intergenic |
GTTGAGAAATATGCAGACTA+AGG | 0.409012 | 1_2:-4036394 | Msa0050280:three_prime_UTR |
AAATAAGAAAGCTATTACTA+AGG | 0.415985 | 1_2:-4039472 | Msa0050280:CDS |
AACGAGACCACACCTGTTAA+GGG | 0.417185 | 1_2:-4036579 | Msa0050280:CDS |
AGATCTCCCTTTGCCATGGA+TGG | 0.424826 | 1_2:+4036890 | None:intergenic |
TTGGTTGCTGCTTTGGTTCG+TGG | 0.425968 | 1_2:-4037508 | Msa0050280:CDS |
ATCCATGGCAAAGGGAGATC+TGG | 0.427839 | 1_2:-4036888 | Msa0050280:CDS |
TATGAATGCAACGAAGAATA+GGG | 0.434157 | 1_2:+4041613 | None:intergenic |
AAAATTCTAATACATAATCT+AGG | 0.435442 | 1_2:+4036345 | None:intergenic |
GATTGTGAGAAGCGTTTGCT+CGG | 0.435749 | 1_2:+4037079 | None:intergenic |
TTAGTTCCAGTTTCATCATT+CGG | 0.436163 | 1_2:-4039516 | Msa0050280:CDS |
GAACTACCGAATGATGAAAC+TGG | 0.439490 | 1_2:+4039510 | None:intergenic |
GGAACTAAAGGCGACGAAAC+AGG | 0.440525 | 1_2:+4039531 | None:intergenic |
ATTCTTCGTTGCATTCATAA+GGG | 0.453261 | 1_2:-4041609 | Msa0050280:CDS |
TCTTACAGCTGAAGCATTTG+TGG | 0.454900 | 1_2:-4036940 | Msa0050280:intron |
AAGGTTTGTAGCCGAATGAT+TGG | 0.455474 | 1_2:+4041575 | None:intergenic |
CTTACAGCTGAAGCATTTGT+GGG | 0.464301 | 1_2:-4036939 | Msa0050280:intron |
AATGAGAATAATACCGATCA+TGG | 0.464413 | 1_2:+4036284 | None:intergenic |
CGAATAACCGTGGGAGAGAA+AGG | 0.476431 | 1_2:-4042166 | Msa0050280:five_prime_UTR |
TATTGAAAACGGTGATCAAA+AGG | 0.481092 | 1_2:+4041366 | None:intergenic |
AATATACCTGATATTGAAAA+CGG | 0.481833 | 1_2:+4041355 | None:intergenic |
ACAACAGTTAGCCTACATTC+TGG | 0.484826 | 1_2:+4036852 | None:intergenic |
GATGCAGACCGCCTAATTGT+TGG | 0.485034 | 1_2:-4037048 | Msa0050280:intron |
AGCTGAAGCATTTGTGGGAA+AGG | 0.485918 | 1_2:-4036934 | Msa0050280:CDS |
ACTGGAGTCTGCCAATCATT+CGG | 0.487248 | 1_2:-4041586 | Msa0050280:CDS |
GCAAACGCTTCTCACAATCA+TGG | 0.490598 | 1_2:-4037075 | Msa0050280:CDS |
AAGAAGAGAGTTTCCATCCA+TGG | 0.493272 | 1_2:-4036903 | Msa0050280:CDS |
GTTGCAAGTGTTAGTAAAGC+GGG | 0.502385 | 1_2:-4037458 | Msa0050280:CDS |
AATATTAAAGAAAATAAAGC+AGG | 0.507004 | 1_2:-4039433 | Msa0050280:intron |
TTACAGAGGCAATGGTCAAA+AGG | 0.509414 | 1_2:-4041408 | Msa0050280:CDS |
CGCTTCTCACAATCATGGGT+TGG | 0.512404 | 1_2:-4037070 | Msa0050280:CDS |
TCAAAAGGCCTTGAGATACT+TGG | 0.512610 | 1_2:+4041381 | None:intergenic |
TCGTTGCATTCATAAGGGAC+TGG | 0.514804 | 1_2:-4041604 | Msa0050280:CDS |
TAGGATCGAAGGTGAGAGTG+TGG | 0.514813 | 1_2:-4042217 | None:intergenic |
CAATCATGGTGCAGTGGCAG+AGG | 0.514969 | 1_2:-4041644 | Msa0050280:exon |
GCTGAAGCATTTGTGGGAAA+GGG | 0.521445 | 1_2:-4036933 | Msa0050280:CDS |
GAATCTTACTTACACTGCGT+TGG | 0.524110 | 1_2:+4042080 | None:intergenic |
AATGATGAAACTGGAACTAA+AGG | 0.526148 | 1_2:+4039519 | None:intergenic |
TTTACTTCCTTTCTCTCCCA+CGG | 0.533498 | 1_2:+4042159 | None:intergenic |
CTTTAAGAAGCTAACTAAGA+AGG | 0.537412 | 1_2:-4036772 | Msa0050280:CDS |
CAGAAGAAAGAAAACAATCA+TGG | 0.539787 | 1_2:-4041658 | Msa0050280:exon |
AGAGATTACCCCTGAAGAAG+AGG | 0.541074 | 1_2:-4036823 | Msa0050280:CDS |
GAGTTTCCATCCATGGCAAA+GGG | 0.541096 | 1_2:-4036896 | Msa0050280:CDS |
TTCCAGATCTCCCTTTGCCA+TGG | 0.541903 | 1_2:+4036886 | None:intergenic |
TAGGCATTTGGAACTAGTCT+CGG | 0.552601 | 1_2:+4036364 | None:intergenic |
CAGGAGTGGTCTCAATAAGC+TGG | 0.554575 | 1_2:+4036730 | None:intergenic |
TGTATTTCAGAGTCCAAAGA+AGG | 0.555548 | 1_2:-4037536 | Msa0050280:intron |
AAGAAGAGGCACAAATTGCT+AGG | 0.562985 | 1_2:-4036809 | Msa0050280:CDS |
CAAACGCTTCTCACAATCAT+GGG | 0.566009 | 1_2:-4037074 | Msa0050280:CDS |
AGAGTTTCCATCCATGGCAA+AGG | 0.569182 | 1_2:-4036897 | Msa0050280:CDS |
GCGCTACTTTCTCAGTCAAG+TGG | 0.577032 | 1_2:+4042189 | None:intergenic |
GAGTCCAAAGAAGGTCAACT+TGG | 0.587341 | 1_2:-4037527 | Msa0050280:CDS |
TAGGTCAGTTACAGAGGCAA+TGG | 0.588340 | 1_2:-4041416 | Msa0050280:CDS |
TCATCATTCGGTAGTTCACA+AGG | 0.588860 | 1_2:-4039504 | Msa0050280:CDS |
ATTGTGAGAAGCGTTTGCTC+GGG | 0.592593 | 1_2:+4037080 | None:intergenic |
ATTGAGACCACTCCTGTTTG+GGG | 0.595488 | 1_2:-4036723 | Msa0050280:CDS |
TCATGCACAGACCAGAATGT+AGG | 0.597465 | 1_2:-4036863 | Msa0050280:CDS |
AACGAGAGTGATAAAGTGCA+AGG | 0.597474 | 1_2:+4041556 | None:intergenic |
TAAGAAGCTAACTAAGAAGG+AGG | 0.597695 | 1_2:-4036769 | Msa0050280:CDS |
TCTCGTTCTTCTCTTTCACA+AGG | 0.601562 | 1_2:-4041540 | Msa0050280:intron |
AATTTGTGCCTCTTCTTCAG+GGG | 0.603280 | 1_2:+4036815 | None:intergenic |
GGCACAAATTGCTAGGCTGA+AGG | 0.607782 | 1_2:-4036802 | Msa0050280:CDS |
GTGGTCTCAATAAGCTGGTG+TGG | 0.608149 | 1_2:+4036735 | None:intergenic |
AAGAAGCTAACTAAGAAGGA+GGG | 0.617043 | 1_2:-4036768 | Msa0050280:CDS |
AGAAAACAATCATGGTGCAG+TGG | 0.621743 | 1_2:-4041650 | Msa0050280:exon |
GTATCGTAGGTCAGTTACAG+AGG | 0.631962 | 1_2:-4041422 | Msa0050280:intron |
AAGGTGTGCCAAGTATCTCA+AGG | 0.633194 | 1_2:-4041389 | Msa0050280:CDS |
AAACACGAGTGGTCTTGTGA+TGG | 0.636084 | 1_2:+4036634 | None:intergenic |
AAAGTAGCGCCGAATAACCG+TGG | 0.638286 | 1_2:-4042176 | Msa0050280:five_prime_UTR |
AGGATCGAAGGTGAGAGTGT+GGG | 0.648556 | 1_2:-4042216 | None:intergenic |
AGTTGCAAGTGTTAGTAAAG+CGG | 0.658625 | 1_2:-4037459 | Msa0050280:CDS |
AAGTAGCGCCGAATAACCGT+GGG | 0.659888 | 1_2:-4042175 | Msa0050280:five_prime_UTR |
AAATATTACCAACAATTAGG+CGG | 0.662377 | 1_2:+4037040 | None:intergenic |
TCATTCGGTAGTTCACAAGG+TGG | 0.716070 | 1_2:-4039501 | Msa0050280:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACTAAAAAATATCAAAAT+GGG | + | chr1_2:4036976-4036995 | None:intergenic | 10.0% |
!! | AAAACTAAAAAATATCAAAA+TGG | + | chr1_2:4036977-4036996 | None:intergenic | 10.0% |
!! | AAAAGTAATTAATATTGTAT+TGG | - | chr1_2:4040117-4040136 | Msa0050280:intron | 10.0% |
!! | AAAAACAAAAAAAAAGAAAA+GGG | + | chr1_2:4041183-4041202 | None:intergenic | 10.0% |
!! | CAAAAAAAAAAATGTGTTTA+GGG | + | chr1_2:4036621-4036640 | None:intergenic | 15.0% |
!!! | GAAAAATGAGATTTTTTTTT+TGG | - | chr1_2:4036656-4036675 | Msa0050280:CDS | 15.0% |
!! | TAAAATAGGTTAAGATTATT+TGG | - | chr1_2:4038396-4038415 | Msa0050280:intron | 15.0% |
!!! | ATTGTTTGTTAAATTGTTTA+TGG | - | chr1_2:4038498-4038517 | Msa0050280:intron | 15.0% |
!!! | TTGTTTGTTAAATTGTTTAT+GGG | - | chr1_2:4038499-4038518 | Msa0050280:intron | 15.0% |
!! | AATATTAAAGAAAATAAAGC+AGG | - | chr1_2:4039040-4039059 | Msa0050280:intron | 15.0% |
!!! | ATGGTTTTCATATAATAAAT+AGG | - | chr1_2:4039292-4039311 | Msa0050280:intron | 15.0% |
!!! | TGGTTTTCATATAATAAATA+GGG | - | chr1_2:4039293-4039312 | Msa0050280:intron | 15.0% |
!! | AAATAAAAGAATTTACATCT+TGG | - | chr1_2:4039681-4039700 | Msa0050280:intron | 15.0% |
!! | AATAAAAGAATTTACATCTT+GGG | - | chr1_2:4039682-4039701 | Msa0050280:intron | 15.0% |
!! | CTAATTTATACCTATATAAA+GGG | + | chr1_2:4039747-4039766 | None:intergenic | 15.0% |
!! | CTTTATATAGGTATAAATTA+GGG | - | chr1_2:4039746-4039765 | Msa0050280:intron | 15.0% |
!! | TAAGAAAAATGTATAAATGA+AGG | - | chr1_2:4039969-4039988 | Msa0050280:intron | 15.0% |
!! | AGTATTAATTAGAGTTATAA+AGG | - | chr1_2:4040091-4040110 | Msa0050280:intron | 15.0% |
!! | GTATTAATTAGAGTTATAAA+GGG | - | chr1_2:4040092-4040111 | Msa0050280:intron | 15.0% |
!! | TATTAATTAGAGTTATAAAG+GGG | - | chr1_2:4040093-4040112 | Msa0050280:intron | 15.0% |
!! | ACTAAATCTAAATTAATTGA+AGG | - | chr1_2:4040298-4040317 | Msa0050280:intron | 15.0% |
!! | CTAAATCTAAATTAATTGAA+GGG | - | chr1_2:4040299-4040318 | Msa0050280:intron | 15.0% |
!! | CAAAAACAAAAAAAAAGAAA+AGG | + | chr1_2:4041184-4041203 | None:intergenic | 15.0% |
!! | AAAAAATATTACCAACAATT+AGG | + | chr1_2:4041439-4041458 | None:intergenic | 15.0% |
!! | AAAATTCTAATACATAATCT+AGG | + | chr1_2:4042131-4042150 | None:intergenic | 15.0% |
!!! | AAATTTTATTATTTGCAACA+AGG | + | chr1_2:4042160-4042179 | None:intergenic | 15.0% |
!! | TAAAAATGAGGTCAATAAAT+GGG | + | chr1_2:4036512-4036531 | None:intergenic | 20.0% |
!! | ATAAAAATGAGGTCAATAAA+TGG | + | chr1_2:4036513-4036532 | None:intergenic | 20.0% |
!! | GCAAAAAAAAAAATGTGTTT+AGG | + | chr1_2:4036622-4036641 | None:intergenic | 20.0% |
!!! | TTTTTTGCCTTTGTTAAATT+CGG | - | chr1_2:4036634-4036653 | Msa0050280:CDS | 20.0% |
!! | AATATACCTGATATTGAAAA+CGG | + | chr1_2:4037121-4037140 | None:intergenic | 20.0% |
!! | ATATAATAACAATGTAGTGT+AGG | - | chr1_2:4037277-4037296 | Msa0050280:intron | 20.0% |
!!! | AAGACTGGTTAAAATTAATT+CGG | + | chr1_2:4037484-4037503 | None:intergenic | 20.0% |
!!! | TTATTTTCAAACATTTGTAC+AGG | + | chr1_2:4037571-4037590 | None:intergenic | 20.0% |
!! | TGTACAAATGTTTGAAAATA+AGG | - | chr1_2:4037570-4037589 | Msa0050280:intron | 20.0% |
!!! | ATTATGTGTTATTCTATTTC+AGG | - | chr1_2:4038872-4038891 | Msa0050280:intron | 20.0% |
!!! | TTATGTGTTATTCTATTTCA+GGG | - | chr1_2:4038873-4038892 | Msa0050280:intron | 20.0% |
!! | AAATAAGAAAGCTATTACTA+AGG | - | chr1_2:4039001-4039020 | Msa0050280:intron | 20.0% |
!!! | TTACATTCAATTTTACACTA+TGG | - | chr1_2:4039139-4039158 | Msa0050280:intron | 20.0% |
!!! | TACATTCAATTTTACACTAT+GGG | - | chr1_2:4039140-4039159 | Msa0050280:intron | 20.0% |
!! | TCATCATTTAATGATTTAGA+TGG | - | chr1_2:4039333-4039352 | Msa0050280:intron | 20.0% |
!! | AAGTTAAAGATTACATAAAG+TGG | + | chr1_2:4039370-4039389 | None:intergenic | 20.0% |
!!! | AAAAATTTAGCTTGAAGTTT+TGG | - | chr1_2:4039475-4039494 | Msa0050280:CDS | 20.0% |
!! | CCTAATTTATACCTATATAA+AGG | + | chr1_2:4039748-4039767 | None:intergenic | 20.0% |
!! | CCTTTATATAGGTATAAATT+AGG | - | chr1_2:4039745-4039764 | Msa0050280:intron | 20.0% |
!! | AAAGTGGAATATATTGAATT+GGG | - | chr1_2:4040056-4040075 | Msa0050280:intron | 20.0% |
!!! | CATTTTTTTTTTGTTGCAAT+TGG | - | chr1_2:4040168-4040187 | Msa0050280:intron | 20.0% |
!! | AAATTAATTGAAGGGATATT+AGG | - | chr1_2:4040307-4040326 | Msa0050280:intron | 20.0% |
!! | AATTAATTGAAGGGATATTA+GGG | - | chr1_2:4040308-4040327 | Msa0050280:intron | 20.0% |
!! | AACAAACAAGTTATAATTGT+TGG | + | chr1_2:4040391-4040410 | None:intergenic | 20.0% |
!! | GAACATCTTGAATTAAAAAA+TGG | - | chr1_2:4040432-4040451 | Msa0050280:intron | 20.0% |
!!! | AAAGTCTATTTGATGATTAT+AGG | + | chr1_2:4040753-4040772 | None:intergenic | 20.0% |
!! | AATTTATGGTTTATGTTTCA+AGG | - | chr1_2:4040887-4040906 | Msa0050280:intron | 20.0% |
!! | ATTTATGGTTTATGTTTCAA+GGG | - | chr1_2:4040888-4040907 | Msa0050280:intron | 20.0% |
!!! | TTTTTGATTTCAATTGAAGA+AGG | - | chr1_2:4041288-4041307 | Msa0050280:intron | 20.0% |
!! | GTTATTCTATTCTTCTTTAT+AGG | - | chr1_2:4041310-4041329 | Msa0050280:intron | 20.0% |
!!! | TAAAGTTTTATTCAAATTGC+AGG | - | chr1_2:4041358-4041377 | Msa0050280:intron | 20.0% |
!! | ATGAAACTTGCAATTAAATA+AGG | + | chr1_2:4041997-4042016 | None:intergenic | 20.0% |
!! | TTATTTAATTGCAAGTTTCA+TGG | - | chr1_2:4041996-4042015 | Msa0050280:intron | 20.0% |
!! | CATTTTTCCGAATTTAACAA+AGG | + | chr1_2:4036644-4036663 | None:intergenic | 25.0% |
!! | GATATGGTTTTTATGAATCA+TGG | - | chr1_2:4036701-4036720 | Msa0050280:CDS | 25.0% |
! | AAGAAGCTCTTAAAATTTGT+AGG | - | chr1_2:4036732-4036751 | Msa0050280:CDS | 25.0% |
! | AGAAGCTCTTAAAATTTGTA+GGG | - | chr1_2:4036733-4036752 | Msa0050280:CDS | 25.0% |
!! | ACAAGTTATTCAAGTTTGTA+AGG | - | chr1_2:4037003-4037022 | Msa0050280:intron | 25.0% |
!! | CAAGTTATTCAAGTTTGTAA+GGG | - | chr1_2:4037004-4037023 | Msa0050280:intron | 25.0% |
! | GCTATACTCTATTTAATAGA+AGG | - | chr1_2:4037238-4037257 | Msa0050280:intron | 25.0% |
!! | TAATCAGTGTTGAAAATCAT+GGG | + | chr1_2:4037341-4037360 | None:intergenic | 25.0% |
!! | TGGTAACATCAAATCAATTT+TGG | + | chr1_2:4037425-4037444 | None:intergenic | 25.0% |
! | CTTAACAAATTATTCACCAA+TGG | - | chr1_2:4037501-4037520 | Msa0050280:CDS | 25.0% |
!! | AAACGTTTTCTCAAAGTAAA+TGG | - | chr1_2:4037667-4037686 | Msa0050280:intron | 25.0% |
!! | AACGTTTTCTCAAAGTAAAT+GGG | - | chr1_2:4037668-4037687 | Msa0050280:intron | 25.0% |
!! | TGTTTCTTTTCTGTGAATTA+AGG | + | chr1_2:4037742-4037761 | None:intergenic | 25.0% |
! | CAAATCGACTGAAATAAATA+AGG | + | chr1_2:4038063-4038082 | None:intergenic | 25.0% |
! | TAAAGAAAGAATACTCTTGA+TGG | + | chr1_2:4038203-4038222 | None:intergenic | 25.0% |
! | GTATTCTTTCTTTATAAGTG+TGG | - | chr1_2:4038209-4038228 | Msa0050280:intron | 25.0% |
! | ATGAAAGATCAACATATTCT+AGG | + | chr1_2:4038263-4038282 | None:intergenic | 25.0% |
! | TTACTAAAGAAACTACTAGA+AGG | + | chr1_2:4038307-4038326 | None:intergenic | 25.0% |
! | AAGGTTTGAACAAGTAAAAT+AGG | - | chr1_2:4038382-4038401 | Msa0050280:intron | 25.0% |
! | AATTGTTTATGGGAACATTA+AGG | - | chr1_2:4038509-4038528 | Msa0050280:intron | 25.0% |
! | ATCATAAAGACCAAAAAAAC+AGG | + | chr1_2:4038687-4038706 | None:intergenic | 25.0% |
! | AGATATAATAACACTAACAC+AGG | + | chr1_2:4038795-4038814 | None:intergenic | 25.0% |
!!! | AGATGAATTTTTTAGCAACT+GGG | + | chr1_2:4038913-4038932 | None:intergenic | 25.0% |
! | TAGTCCAGAAAAATTGATAA+TGG | - | chr1_2:4039200-4039219 | Msa0050280:intron | 25.0% |
!! | CATTCCATTATCAATTTTTC+TGG | + | chr1_2:4039207-4039226 | None:intergenic | 25.0% |
!! | ATGTGCATTGATGTTAATTA+TGG | - | chr1_2:4039273-4039292 | Msa0050280:intron | 25.0% |
! | CATTCAAGAAAAGCAAAAAA+AGG | + | chr1_2:4039428-4039447 | None:intergenic | 25.0% |
! | ATTTACATCTTGGGTTAAAT+TGG | - | chr1_2:4039691-4039710 | Msa0050280:intron | 25.0% |
! | TATATAGGTATAAATTAGGG+TGG | - | chr1_2:4039749-4039768 | Msa0050280:intron | 25.0% |
! | ATATAGGTATAAATTAGGGT+GGG | - | chr1_2:4039750-4039769 | Msa0050280:intron | 25.0% |
! | TGCAATTCACTCAATAAATT+AGG | - | chr1_2:4039776-4039795 | Msa0050280:intron | 25.0% |
! | GCAATTCACTCAATAAATTA+GGG | - | chr1_2:4039777-4039796 | Msa0050280:intron | 25.0% |
! | CAATTCACTCAATAAATTAG+GGG | - | chr1_2:4039778-4039797 | Msa0050280:intron | 25.0% |
! | AAGTGAGAGGATTTAATATA+GGG | + | chr1_2:4039812-4039831 | None:intergenic | 25.0% |
! | AAAGTGAGAGGATTTAATAT+AGG | + | chr1_2:4039813-4039832 | None:intergenic | 25.0% |
!! | TAAGTGATTTTGTTGAGTAT+TGG | - | chr1_2:4040009-4040028 | Msa0050280:intron | 25.0% |
! | CAAAGTGGAATATATTGAAT+TGG | - | chr1_2:4040055-4040074 | Msa0050280:intron | 25.0% |
! | TATTGTATTGGAAAGTGAAA+TGG | - | chr1_2:4040129-4040148 | Msa0050280:intron | 25.0% |
!!! | TTCAATAACACTTTTTCTCA+TGG | + | chr1_2:4040276-4040295 | None:intergenic | 25.0% |
!!! | TTGTTGTTTATATTTGAGAC+TGG | - | chr1_2:4040406-4040425 | Msa0050280:intron | 25.0% |
! | GTTAGCACTTTAAATAAATG+AGG | + | chr1_2:4040526-4040545 | None:intergenic | 25.0% |
! | TATAGTAGAAAGAGTTGAAA+GGG | + | chr1_2:4040659-4040678 | None:intergenic | 25.0% |
!!! | TTTTGTTTTTGATTTCGAGT+TGG | - | chr1_2:4041193-4041212 | Msa0050280:intron | 25.0% |
!!! | TTTGTTTTTGATTTCGAGTT+GGG | - | chr1_2:4041194-4041213 | Msa0050280:intron | 25.0% |
! | AAATATTACCAACAATTAGG+CGG | + | chr1_2:4041436-4041455 | None:intergenic | 25.0% |
!!! | TACGGATAGATTTGTTTTTT+CGG | + | chr1_2:4041920-4041939 | None:intergenic | 25.0% |
! | AAAAAACAAATCTATCCGTA+GGG | - | chr1_2:4041920-4041939 | Msa0050280:intron | 25.0% |
!! | CATGGTTTGATTTATGTTTA+TGG | - | chr1_2:4042014-4042033 | Msa0050280:intron | 25.0% |
! | TAATACATAATCTAGGCATT+TGG | + | chr1_2:4042124-4042143 | None:intergenic | 25.0% |
!! | ATTTTGTACTTAACCATGAT+CGG | - | chr1_2:4042176-4042195 | Msa0050280:five_prime_UTR | 25.0% |
TTTGATCAAACACTTTGTGT+GGG | + | chr1_2:4036473-4036492 | None:intergenic | 30.0% | |
ATTTGATCAAACACTTTGTG+TGG | + | chr1_2:4036474-4036493 | None:intergenic | 30.0% | |
!! | AATGGGCATTGATAAAAATG+AGG | + | chr1_2:4036524-4036543 | None:intergenic | 30.0% |
ATAATTGGATTCAGAGCAAT+GGG | + | chr1_2:4036541-4036560 | None:intergenic | 30.0% | |
AATAATTGGATTCAGAGCAA+TGG | + | chr1_2:4036542-4036561 | None:intergenic | 30.0% | |
GTTCAACAGAACTCAATAAT+TGG | + | chr1_2:4036556-4036575 | None:intergenic | 30.0% | |
! | GTTTTTATGAATCATGGAGT+GGG | - | chr1_2:4036707-4036726 | Msa0050280:CDS | 30.0% |
CAGAAGAAAGAAAACAATCA+TGG | - | chr1_2:4036815-4036834 | Msa0050280:CDS | 30.0% | |
TATGAATGCAACGAAGAATA+GGG | + | chr1_2:4036863-4036882 | None:intergenic | 30.0% | |
TTATGAATGCAACGAAGAAT+AGG | + | chr1_2:4036864-4036883 | None:intergenic | 30.0% | |
TATTCTTCGTTGCATTCATA+AGG | - | chr1_2:4036863-4036882 | Msa0050280:CDS | 30.0% | |
ATTCTTCGTTGCATTCATAA+GGG | - | chr1_2:4036864-4036883 | Msa0050280:CDS | 30.0% | |
! | TTCAAGTTTGTAAGGGTTTA+TGG | - | chr1_2:4037011-4037030 | Msa0050280:intron | 30.0% |
TCAAGTTTGTAAGGGTTTAT+GGG | - | chr1_2:4037012-4037031 | Msa0050280:intron | 30.0% | |
CCTACGATACCAAAAAAAAA+CGG | + | chr1_2:4037041-4037060 | None:intergenic | 30.0% | |
TATTGAAAACGGTGATCAAA+AGG | + | chr1_2:4037110-4037129 | None:intergenic | 30.0% | |
AATAGAGTATAGCTGAACAA+TGG | + | chr1_2:4037231-4037250 | None:intergenic | 30.0% | |
! | CTAATCAGTGTTGAAAATCA+TGG | + | chr1_2:4037342-4037361 | None:intergenic | 30.0% |
! | ACTGATTAGTTCACAAGTTT+GGG | - | chr1_2:4037353-4037372 | Msa0050280:intron | 30.0% |
!! | GGTGAATAATTTGTTAAGAC+TGG | + | chr1_2:4037499-4037518 | None:intergenic | 30.0% |
!! | ACTTTGAGAAAACGTTTTCT+AGG | + | chr1_2:4037664-4037683 | None:intergenic | 30.0% |
AGCACTTTCACTTAATCTAT+AGG | + | chr1_2:4037708-4037727 | None:intergenic | 30.0% | |
!!! | TAAGTGAAAGTGCTTTTGAT+AGG | - | chr1_2:4037714-4037733 | Msa0050280:intron | 30.0% |
AGAGAAATATCTCATATCTG+AGG | + | chr1_2:4037839-4037858 | None:intergenic | 30.0% | |
TTATTCAGATACAAGCCTTA+TGG | + | chr1_2:4037873-4037892 | None:intergenic | 30.0% | |
TGGGAGTTATATAAAGGATA+GGG | + | chr1_2:4037920-4037939 | None:intergenic | 30.0% | |
ATGGGAGTTATATAAAGGAT+AGG | + | chr1_2:4037921-4037940 | None:intergenic | 30.0% | |
GAAGAATGGGAGTTATATAA+AGG | + | chr1_2:4037926-4037945 | None:intergenic | 30.0% | |
!! | CTAGTTTGTTAGAGAAGAAT+GGG | + | chr1_2:4037939-4037958 | None:intergenic | 30.0% |
!! | GTTGGTTATATTTGATGATG+TGG | + | chr1_2:4037962-4037981 | None:intergenic | 30.0% |
!!! | TCCTATTTAGCACGTTTTTT+GGG | - | chr1_2:4037984-4038003 | Msa0050280:intron | 30.0% |
AATGTTCACTAAATTGCTTG+AGG | + | chr1_2:4038177-4038196 | None:intergenic | 30.0% | |
TTCTTTATAAGTGTGGTCTA+AGG | - | chr1_2:4038216-4038235 | Msa0050280:intron | 30.0% | |
ATATGTTGATCTTTCATGCT+AGG | - | chr1_2:4038266-4038285 | Msa0050280:intron | 30.0% | |
!! | AAGATTGTGATTTGGTTAGT+TGG | + | chr1_2:4038759-4038778 | None:intergenic | 30.0% |
AACTAACCAAATCACAATCT+TGG | - | chr1_2:4038758-4038777 | Msa0050280:intron | 30.0% | |
ACTAACCAAATCACAATCTT+GGG | - | chr1_2:4038759-4038778 | Msa0050280:intron | 30.0% | |
!!! | CAGATGAATTTTTTAGCAAC+TGG | + | chr1_2:4038914-4038933 | None:intergenic | 30.0% |
GTTGCTAAAAAATTCATCTG+AGG | - | chr1_2:4038914-4038933 | Msa0050280:intron | 30.0% | |
AATGATGAAACTGGAACTAA+AGG | + | chr1_2:4038957-4038976 | None:intergenic | 30.0% | |
TTAGTTCCAGTTTCATCATT+CGG | - | chr1_2:4038957-4038976 | Msa0050280:intron | 30.0% | |
! | GGTTTTCTTATATGCATGAT+TGG | - | chr1_2:4039105-4039124 | Msa0050280:intron | 30.0% |
! | ATAAAGGGAATACCAAGTTT+TGG | + | chr1_2:4039732-4039751 | None:intergenic | 30.0% |
ACTTGGTATTCCCTTTATAT+AGG | - | chr1_2:4039734-4039753 | Msa0050280:intron | 30.0% | |
! | ATATGTGTGAAATGAGCTTT+TGG | + | chr1_2:4039949-4039968 | None:intergenic | 30.0% |
!! | TGAAATGGCTCAGTTATTTT+AGG | - | chr1_2:4040144-4040163 | Msa0050280:intron | 30.0% |
! | TTGTTTATATTTGAGACTGG+AGG | - | chr1_2:4040409-4040428 | Msa0050280:intron | 30.0% |
! | TGTTTATATTTGAGACTGGA+GGG | - | chr1_2:4040410-4040429 | Msa0050280:intron | 30.0% |
CACTTTAAATAAATGAGGCT+AGG | + | chr1_2:4040521-4040540 | None:intergenic | 30.0% | |
GTATAGTAGAAAGAGTTGAA+AGG | + | chr1_2:4040660-4040679 | None:intergenic | 30.0% | |
!! | CTACTATACTCCTTTGAAAT+AGG | - | chr1_2:4040671-4040690 | Msa0050280:intron | 30.0% |
AATTGCTTTCTAAGTTCTTC+TGG | - | chr1_2:4041120-4041139 | Msa0050280:intron | 30.0% | |
ATTGCTTTCTAAGTTCTTCT+GGG | - | chr1_2:4041121-4041140 | Msa0050280:intron | 30.0% | |
CAAAAAAAAAGAAAAGGGCT+AGG | + | chr1_2:4041178-4041197 | None:intergenic | 30.0% | |
TCATCAGTAAAGAGAAAACA+AGG | + | chr1_2:4041498-4041517 | None:intergenic | 30.0% | |
!! | TTTTCTCTTTACTGATGATG+CGG | - | chr1_2:4041500-4041519 | Msa0050280:intron | 30.0% |
! | CTTTAAGAAGCTAACTAAGA+AGG | - | chr1_2:4041701-4041720 | Msa0050280:intron | 30.0% |
!!! | GATGGCTAGATTTGTTTTTT+CGG | + | chr1_2:4041824-4041843 | None:intergenic | 30.0% |
GAAAAAACAAATCTATCCGT+AGG | - | chr1_2:4041919-4041938 | Msa0050280:intron | 30.0% | |
AAAAACAAATCTATCCGTAG+GGG | - | chr1_2:4041921-4041940 | Msa0050280:intron | 30.0% | |
AATGAGAATAATACCGATCA+TGG | + | chr1_2:4042192-4042211 | None:intergenic | 30.0% | |
!! | ATTTTGAGTGTGTGATGCAA+TGG | + | chr1_2:4036594-4036613 | None:intergenic | 35.0% |
! | GGTTTTTATGAATCATGGAG+TGG | - | chr1_2:4036706-4036725 | Msa0050280:CDS | 35.0% |
CAAGTTTGTAAGGGTTTATG+GGG | - | chr1_2:4037013-4037032 | Msa0050280:intron | 35.0% | |
!!! | TATGGGGAACCGTTTTTTTT+TGG | - | chr1_2:4037029-4037048 | Msa0050280:intron | 35.0% |
!!! | CCGTTTTTTTTTGGTATCGT+AGG | - | chr1_2:4037038-4037057 | Msa0050280:intron | 35.0% |
! | TGATCACCGTTTTCAATATC+AGG | - | chr1_2:4037112-4037131 | Msa0050280:intron | 35.0% |
CACCATCATCATTGTTGTAT+TGG | - | chr1_2:4037154-4037173 | Msa0050280:intron | 35.0% | |
GACCAATACAACAATGATGA+TGG | + | chr1_2:4037159-4037178 | None:intergenic | 35.0% | |
AGTCACTATTTGACAACACT+GGG | + | chr1_2:4037181-4037200 | None:intergenic | 35.0% | |
TAGTCACTATTTGACAACAC+TGG | + | chr1_2:4037182-4037201 | None:intergenic | 35.0% | |
! | GGTTTGTTCAAAATCCACTA+CGG | + | chr1_2:4037304-4037323 | None:intergenic | 35.0% |
! | CACTGATTAGTTCACAAGTT+TGG | - | chr1_2:4037352-4037371 | Msa0050280:intron | 35.0% |
! | CTGATTAGTTCACAAGTTTG+GGG | - | chr1_2:4037354-4037373 | Msa0050280:intron | 35.0% |
AATCACAGCTAGAACAAACA+TGG | + | chr1_2:4037445-4037464 | None:intergenic | 35.0% | |
! | AGATACAAGCCTTATGGTTT+AGG | + | chr1_2:4037867-4037886 | None:intergenic | 35.0% |
!! | GCTAGTTTGTTAGAGAAGAA+TGG | + | chr1_2:4037940-4037959 | None:intergenic | 35.0% |
!!! | CTCCTATTTAGCACGTTTTT+TGG | - | chr1_2:4037983-4038002 | Msa0050280:intron | 35.0% |
!!! | CCTATTTAGCACGTTTTTTG+GGG | - | chr1_2:4037985-4038004 | Msa0050280:intron | 35.0% |
TTTCTTTAGTAAGCACCTTG+TGG | - | chr1_2:4038315-4038334 | Msa0050280:intron | 35.0% | |
! | AAACCTTTTAACCCTATGTC+CGG | + | chr1_2:4038369-4038388 | None:intergenic | 35.0% |
TATGGGAACATTAAGGTTGT+TGG | - | chr1_2:4038516-4038535 | Msa0050280:intron | 35.0% | |
CTTAGCTCATTCACTTGTAA+GGG | - | chr1_2:4038552-4038571 | Msa0050280:intron | 35.0% | |
AGTAGACATGCTGTTATTGT+AGG | - | chr1_2:4038592-4038611 | Msa0050280:intron | 35.0% | |
ATGGAAAGAAGCAAGAAGAA+AGG | + | chr1_2:4038654-4038673 | None:intergenic | 35.0% | |
! | AAAAACAGGTTGACACAGTA+TGG | + | chr1_2:4038673-4038692 | None:intergenic | 35.0% |
!!! | ACTGTGTCAACCTGTTTTTT+TGG | - | chr1_2:4038674-4038693 | Msa0050280:intron | 35.0% |
TGTAACCCAAGATTGTGATT+TGG | + | chr1_2:4038767-4038786 | None:intergenic | 35.0% | |
TTGAAATGCCTTATCTCTTC+AGG | - | chr1_2:4039064-4039083 | Msa0050280:intron | 35.0% | |
!! | CAAGTTTTGGTGTAGCTTTT+TGG | + | chr1_2:4039719-4039738 | None:intergenic | 35.0% |
CAAAAAGCTACACCAAAACT+TGG | - | chr1_2:4039717-4039736 | Msa0050280:intron | 35.0% | |
TTGCTTCTGATAAAAGTGAG+AGG | + | chr1_2:4039825-4039844 | None:intergenic | 35.0% | |
TTATCAGAAGCAACATGATG+AGG | - | chr1_2:4039832-4039851 | Msa0050280:intron | 35.0% | |
GTTATATATAGTACTCCCTC+TGG | - | chr1_2:4039861-4039880 | Msa0050280:intron | 35.0% | |
! | TGCTTTTATATGAGACCAGA+GGG | + | chr1_2:4039879-4039898 | None:intergenic | 35.0% |
CCACTTTGCATTTATGATAG+TGG | + | chr1_2:4040043-4040062 | None:intergenic | 35.0% | |
CCACTATCATAAATGCAAAG+TGG | - | chr1_2:4040040-4040059 | Msa0050280:intron | 35.0% | |
! | TGCAATTGGCTCAGTTATTA+TGG | - | chr1_2:4040182-4040201 | Msa0050280:intron | 35.0% |
! | GCAATTGGCTCAGTTATTAT+GGG | - | chr1_2:4040183-4040202 | Msa0050280:intron | 35.0% |
! | TTTTCCAAACTATCCCTCAT+GGG | - | chr1_2:4040242-4040261 | Msa0050280:intron | 35.0% |
AAGAACTTCAATGATCTGCT+TGG | - | chr1_2:4040471-4040490 | Msa0050280:intron | 35.0% | |
! | AGAAAGAGTTGAAAGGGTAT+TGG | + | chr1_2:4040653-4040672 | None:intergenic | 35.0% |
! | TAGCTAGTCTCCTATTTCAA+AGG | + | chr1_2:4040684-4040703 | None:intergenic | 35.0% |
GAATGGGATACAATCATGAA+AGG | + | chr1_2:4040804-4040823 | None:intergenic | 35.0% | |
TTCATGATTGTATCCCATTC+AGG | - | chr1_2:4040804-4040823 | Msa0050280:intron | 35.0% | |
!! | TGCTCTGGAAACTCAATTTA+TGG | - | chr1_2:4040873-4040892 | Msa0050280:intron | 35.0% |
TGTATTTCAGAGTCCAAAGA+AGG | - | chr1_2:4040937-4040956 | Msa0050280:intron | 35.0% | |
AGTTGCAAGTGTTAGTAAAG+CGG | - | chr1_2:4041014-4041033 | Msa0050280:intron | 35.0% | |
GGCTTCAAAAACTGTATATC+AGG | - | chr1_2:4041036-4041055 | Msa0050280:intron | 35.0% | |
GACAGAATAATAACTAGTGC+TGG | + | chr1_2:4041064-4041083 | None:intergenic | 35.0% | |
TTGCTTTCTAAGTTCTTCTG+GGG | - | chr1_2:4041122-4041141 | Msa0050280:intron | 35.0% | |
! | TTGGGACTTTGTTAGTTTGA+AGG | - | chr1_2:4041212-4041231 | Msa0050280:intron | 35.0% |
TAAGAAGCTAACTAAGAAGG+AGG | - | chr1_2:4041704-4041723 | Msa0050280:intron | 35.0% | |
AAGAAGCTAACTAAGAAGGA+GGG | - | chr1_2:4041705-4041724 | Msa0050280:intron | 35.0% | |
!!! | TTATTTTTTCGTCCCCAAAC+AGG | + | chr1_2:4041765-4041784 | None:intergenic | 35.0% |
!!! | GACGGCTAGATTTGTTTTTT+CGG | + | chr1_2:4041947-4041966 | None:intergenic | 35.0% |
GTTGAGAAATATGCAGACTA+AGG | - | chr1_2:4042079-4042098 | Msa0050280:intron | 35.0% | |
TTTACTTCCTTTCTCTCCCA+CGG | + | chr1_2:4036317-4036336 | None:intergenic | 40.0% | |
GAATCTTACTTACACTGCGT+TGG | + | chr1_2:4036396-4036415 | None:intergenic | 40.0% | |
TTGGTCCTGATTGACAAATC+TGG | - | chr1_2:4036675-4036694 | Msa0050280:CDS | 40.0% | |
TCCTGATTGACAAATCTGGA+GGG | - | chr1_2:4036679-4036698 | Msa0050280:CDS | 40.0% | |
TTGACAAATCTGGAGGGATA+TGG | - | chr1_2:4036685-4036704 | Msa0050280:CDS | 40.0% | |
AGAAAACAATCATGGTGCAG+TGG | - | chr1_2:4036823-4036842 | Msa0050280:CDS | 40.0% | |
AAGGTTTGTAGCCGAATGAT+TGG | + | chr1_2:4036901-4036920 | None:intergenic | 40.0% | |
AACGAGAGTGATAAAGTGCA+AGG | + | chr1_2:4036920-4036939 | None:intergenic | 40.0% | |
TCTCGTTCTTCTCTTTCACA+AGG | - | chr1_2:4036933-4036952 | Msa0050280:CDS | 40.0% | |
TTACAGAGGCAATGGTCAAA+AGG | - | chr1_2:4037065-4037084 | Msa0050280:CDS | 40.0% | |
TCAAAAGGCCTTGAGATACT+TGG | + | chr1_2:4037095-4037114 | None:intergenic | 40.0% | |
TCTCAAAGTAAACAGGCCAT+TGG | + | chr1_2:4037520-4037539 | None:intergenic | 40.0% | |
CGCAGTTTCTCAAAGTAAAC+AGG | + | chr1_2:4037527-4037546 | None:intergenic | 40.0% | |
! | CTTTTGCTTTGGCGTTACAA+GGG | + | chr1_2:4037814-4037833 | None:intergenic | 40.0% |
! | TATCTGAGGAGCTTTTGCTT+TGG | + | chr1_2:4037825-4037844 | None:intergenic | 40.0% |
AACGTGCTAAATAGGAGAGT+TGG | + | chr1_2:4037980-4037999 | None:intergenic | 40.0% | |
CCCCAAAAAACGTGCTAAAT+AGG | + | chr1_2:4037988-4038007 | None:intergenic | 40.0% | |
AACAAAAGCTGTCAGGTACT+GGG | + | chr1_2:4038023-4038042 | None:intergenic | 40.0% | |
CATTGAGAACAAAAGCTGTC+AGG | + | chr1_2:4038030-4038049 | None:intergenic | 40.0% | |
AAATTGCTTGAGGAAACCCT+CGG | + | chr1_2:4038167-4038186 | None:intergenic | 40.0% | |
! | AGCACCTTGTGGATTGTATT+AGG | - | chr1_2:4038326-4038345 | Msa0050280:intron | 40.0% |
! | GCACCTTGTGGATTGTATTA+GGG | - | chr1_2:4038327-4038346 | Msa0050280:intron | 40.0% |
CAACCCTAATACAATCCACA+AGG | + | chr1_2:4038333-4038352 | None:intergenic | 40.0% | |
GCTTAGCTCATTCACTTGTA+AGG | - | chr1_2:4038551-4038570 | Msa0050280:intron | 40.0% | |
GAACTACCGAATGATGAAAC+TGG | + | chr1_2:4038966-4038985 | None:intergenic | 40.0% | |
TCATCATTCGGTAGTTCACA+AGG | - | chr1_2:4038969-4038988 | Msa0050280:intron | 40.0% | |
ATCAAGAGCCTGAAGAGATA+AGG | + | chr1_2:4039075-4039094 | None:intergenic | 40.0% | |
TTATCTCTTCAGGCTCTTGA+TGG | - | chr1_2:4039074-4039093 | Msa0050280:intron | 40.0% | |
!!! | AGGCTCTTGATGGATTGTTT+TGG | - | chr1_2:4039084-4039103 | Msa0050280:intron | 40.0% |
AATTACACTAGCGTGCAAAC+AGG | - | chr1_2:4039391-4039410 | Msa0050280:intron | 40.0% | |
GTCGTGATAAAAGTCAACAG+AGG | + | chr1_2:4039455-4039474 | None:intergenic | 40.0% | |
!! | CTGCTTTTATATGAGACCAG+AGG | + | chr1_2:4039880-4039899 | None:intergenic | 40.0% |
!!! | GCTTTTGGCTCAGTTAATCT+GGG | + | chr1_2:4039934-4039953 | None:intergenic | 40.0% |
!!! | AGCTTTTGGCTCAGTTAATC+TGG | + | chr1_2:4039935-4039954 | None:intergenic | 40.0% |
TTGGCTCAGTTATTATGGGA+CGG | - | chr1_2:4040187-4040206 | Msa0050280:intron | 40.0% | |
! | CTTTTCCAAACTATCCCTCA+TGG | - | chr1_2:4040241-4040260 | Msa0050280:intron | 40.0% |
TAACATACTCGTAGTACTCC+TGG | - | chr1_2:4040542-4040561 | Msa0050280:intron | 40.0% | |
!! | CACATTTTAGCCTCCATAAC+TGG | - | chr1_2:4040617-4040636 | Msa0050280:intron | 40.0% |
TGGAATTGTACCAGTTATGG+AGG | + | chr1_2:4040630-4040649 | None:intergenic | 40.0% | |
TGGTGGAATTGTACCAGTTA+TGG | + | chr1_2:4040633-4040652 | None:intergenic | 40.0% | |
!! | AAGAGTTGAAAGGGTATTGG+TGG | + | chr1_2:4040650-4040669 | None:intergenic | 40.0% |
ACAAGCAGTTACACCTGAAT+GGG | + | chr1_2:4040820-4040839 | None:intergenic | 40.0% | |
TACAAGCAGTTACACCTGAA+TGG | + | chr1_2:4040821-4040840 | None:intergenic | 40.0% | |
AGTTTCCAGAGCAAGTACAA+GGG | + | chr1_2:4040866-4040885 | None:intergenic | 40.0% | |
GTTGCAAGTGTTAGTAAAGC+GGG | - | chr1_2:4041015-4041034 | Msa0050280:intron | 40.0% | |
AAAAAGAAAAGGGCTAGGAG+TGG | + | chr1_2:4041173-4041192 | None:intergenic | 40.0% | |
CAAACGCTTCTCACAATCAT+GGG | - | chr1_2:4041399-4041418 | Msa0050280:CDS | 40.0% | |
! | TCTTACAGCTGAAGCATTTG+TGG | - | chr1_2:4041533-4041552 | Msa0050280:intron | 40.0% |
! | CTTACAGCTGAAGCATTTGT+GGG | - | chr1_2:4041534-4041553 | Msa0050280:intron | 40.0% |
AAGAAGAGAGTTTCCATCCA+TGG | - | chr1_2:4041570-4041589 | Msa0050280:CDS | 40.0% | |
! | ACAACAGTTAGCCTACATTC+TGG | + | chr1_2:4041624-4041643 | None:intergenic | 40.0% |
AATTTGTGCCTCTTCTTCAG+GGG | + | chr1_2:4041661-4041680 | None:intergenic | 40.0% | |
CAATTTGTGCCTCTTCTTCA+GGG | + | chr1_2:4041662-4041681 | None:intergenic | 40.0% | |
! | AAGAAGAGGCACAAATTGCT+AGG | - | chr1_2:4041664-4041683 | Msa0050280:intron | 40.0% |
TTATTGAGACCACTCCTGTT+TGG | - | chr1_2:4041748-4041767 | Msa0050280:intron | 40.0% | |
TATTGAGACCACTCCTGTTT+GGG | - | chr1_2:4041749-4041768 | Msa0050280:intron | 40.0% | |
!!! | TTGTTTTTTCGGTCCCAAAC+AGG | + | chr1_2:4041813-4041832 | None:intergenic | 40.0% |
!!! | TTTTTTGTCCCAAACACGAG+TGG | + | chr1_2:4041853-4041872 | None:intergenic | 40.0% |
!!! | TTGTTTTTTCGGCCCTTAAC+AGG | + | chr1_2:4041909-4041928 | None:intergenic | 40.0% |
!!! | ATTTGTTTTTTCGGCCCCTA+CGG | + | chr1_2:4041938-4041957 | None:intergenic | 40.0% |
! | TAGGCATTTGGAACTAGTCT+CGG | + | chr1_2:4042112-4042131 | None:intergenic | 40.0% |
CTTTCTCTCCCACGGTTATT+CGG | + | chr1_2:4036309-4036328 | None:intergenic | 45.0% | |
AAACACTTTGTGTGGGTGTG+TGG | + | chr1_2:4036466-4036485 | None:intergenic | 45.0% | |
GTCCTGATTGACAAATCTGG+AGG | - | chr1_2:4036678-4036697 | Msa0050280:CDS | 45.0% | |
TCCCTCCAGATTTGTCAATC+AGG | + | chr1_2:4036683-4036702 | None:intergenic | 45.0% | |
TCGTTGCATTCATAAGGGAC+TGG | - | chr1_2:4036869-4036888 | Msa0050280:CDS | 45.0% | |
ACTGGAGTCTGCCAATCATT+CGG | - | chr1_2:4036887-4036906 | Msa0050280:CDS | 45.0% | |
GTATCGTAGGTCAGTTACAG+AGG | - | chr1_2:4037051-4037070 | Msa0050280:CDS | 45.0% | |
TAGGTCAGTTACAGAGGCAA+TGG | - | chr1_2:4037057-4037076 | Msa0050280:CDS | 45.0% | |
AAGGTGTGCCAAGTATCTCA+AGG | - | chr1_2:4037084-4037103 | Msa0050280:CDS | 45.0% | |
AATGTAGTGTAGGACCGTAG+TGG | - | chr1_2:4037287-4037306 | Msa0050280:intron | 45.0% | |
GTGTTGAAAATCATGGGTCG+TGG | + | chr1_2:4037335-4037354 | None:intergenic | 45.0% | |
! | AGTTCACAAGTTTGGGGCAT+TGG | - | chr1_2:4037360-4037379 | Msa0050280:intron | 45.0% |
! | GCTTTTGCTTTGGCGTTACA+AGG | + | chr1_2:4037815-4037834 | None:intergenic | 45.0% |
CTCTCTCTGCCTAAACCATA+AGG | - | chr1_2:4037855-4037874 | Msa0050280:intron | 45.0% | |
!!! | TAGCACGTTTTTTGGGGCTT+AGG | - | chr1_2:4037991-4038010 | Msa0050280:intron | 45.0% |
GAACAAAAGCTGTCAGGTAC+TGG | + | chr1_2:4038024-4038043 | None:intergenic | 45.0% | |
TTGATTGTGCATTTGTGCCG+AGG | - | chr1_2:4038147-4038166 | Msa0050280:intron | 45.0% | |
TGATTGTGCATTTGTGCCGA+GGG | - | chr1_2:4038148-4038167 | Msa0050280:intron | 45.0% | |
! | CTTTTAACCCTATGTCCGGA+AGG | + | chr1_2:4038365-4038384 | None:intergenic | 45.0% |
CTTCCGGACATAGGGTTAAA+AGG | - | chr1_2:4038363-4038382 | Msa0050280:intron | 45.0% | |
!!! | GAGCTTTCCTTGCTGTTTTG+TGG | - | chr1_2:4038423-4038442 | Msa0050280:intron | 45.0% |
!!! | CTTTCCTTGCTGTTTTGTGG+TGG | - | chr1_2:4038426-4038445 | Msa0050280:intron | 45.0% |
AGATCCACCACAAAACAGCA+AGG | + | chr1_2:4038433-4038452 | None:intergenic | 45.0% | |
!!! | TTGCTGTTTTGTGGTGGATC+TGG | - | chr1_2:4038432-4038451 | Msa0050280:intron | 45.0% |
!!! | TGTTTTGTGGTGGATCTGGT+TGG | - | chr1_2:4038436-4038455 | Msa0050280:intron | 45.0% |
AGCTCATTCACTTGTAAGGG+AGG | - | chr1_2:4038555-4038574 | Msa0050280:intron | 45.0% | |
!!! | TAAGGGAGGAGTTGCTGTTT+TGG | - | chr1_2:4038569-4038588 | Msa0050280:intron | 45.0% |
TCATTCGGTAGTTCACAAGG+TGG | - | chr1_2:4038972-4038991 | Msa0050280:intron | 45.0% | |
CAGAAGCAACATGATGAGGA+AGG | - | chr1_2:4039836-4039855 | Msa0050280:intron | 45.0% | |
TTGGCTCAGTTAATCTGGGA+CGG | + | chr1_2:4039930-4039949 | None:intergenic | 45.0% | |
CTCAGTTATTATGGGACGGA+GGG | - | chr1_2:4040191-4040210 | Msa0050280:intron | 45.0% | |
AGTTCCCATGAGGGATAGTT+TGG | + | chr1_2:4040249-4040268 | None:intergenic | 45.0% | |
CATGGAACAAGTTCCCATGA+GGG | + | chr1_2:4040258-4040277 | None:intergenic | 45.0% | |
TCATGGAACAAGTTCCCATG+AGG | + | chr1_2:4040259-4040278 | None:intergenic | 45.0% | |
AGAGTCTGTGCATAACCAAC+CGG | + | chr1_2:4040586-4040605 | None:intergenic | 45.0% | |
TGTATCCCTTGTACTTGCTC+TGG | - | chr1_2:4040858-4040877 | Msa0050280:intron | 45.0% | |
GAGTTTCCAGAGCAAGTACA+AGG | + | chr1_2:4040867-4040886 | None:intergenic | 45.0% | |
GAGTCCAAAGAAGGTCAACT+TGG | - | chr1_2:4040946-4040965 | Msa0050280:intron | 45.0% | |
! | GCAACCAAGTTGACCTTCTT+TGG | + | chr1_2:4040953-4040972 | None:intergenic | 45.0% |
!! | TCTAAGTTCTTCTGGGGCAT+TGG | - | chr1_2:4041128-4041147 | Msa0050280:intron | 45.0% |
AAGGGCTAGGAGTGGAAAAA+GGG | + | chr1_2:4041165-4041184 | None:intergenic | 45.0% | |
AAAGGGCTAGGAGTGGAAAA+AGG | + | chr1_2:4041166-4041185 | None:intergenic | 45.0% | |
!! | ATTGTGAGAAGCGTTTGCTC+GGG | + | chr1_2:4041396-4041415 | None:intergenic | 45.0% |
!! | GATTGTGAGAAGCGTTTGCT+CGG | + | chr1_2:4041397-4041416 | None:intergenic | 45.0% |
GCAAACGCTTCTCACAATCA+TGG | - | chr1_2:4041398-4041417 | Msa0050280:CDS | 45.0% | |
! | AGCTGAAGCATTTGTGGGAA+AGG | - | chr1_2:4041539-4041558 | Msa0050280:intron | 45.0% |
! | GCTGAAGCATTTGTGGGAAA+GGG | - | chr1_2:4041540-4041559 | Msa0050280:intron | 45.0% |
AGAGTTTCCATCCATGGCAA+AGG | - | chr1_2:4041576-4041595 | Msa0050280:CDS | 45.0% | |
GAGTTTCCATCCATGGCAAA+GGG | - | chr1_2:4041577-4041596 | Msa0050280:CDS | 45.0% | |
TCATGCACAGACCAGAATGT+AGG | - | chr1_2:4041610-4041629 | Msa0050280:CDS | 45.0% | |
AGAGATTACCCCTGAAGAAG+AGG | - | chr1_2:4041650-4041669 | Msa0050280:exon | 45.0% | |
GCAATTTGTGCCTCTTCTTC+AGG | + | chr1_2:4041663-4041682 | None:intergenic | 45.0% | |
ATTGAGACCACTCCTGTTTG+GGG | - | chr1_2:4041750-4041769 | Msa0050280:intron | 45.0% | |
AAAACGAGACCACTCCTGTT+TGG | - | chr1_2:4041796-4041815 | Msa0050280:intron | 45.0% | |
AAACGAGACCACTCCTGTTT+GGG | - | chr1_2:4041797-4041816 | Msa0050280:intron | 45.0% | |
!! | AAACACGAGTGGTCTTGTGA+TGG | + | chr1_2:4041842-4041861 | None:intergenic | 45.0% |
ATCACAAGACCACTCGTGTT+TGG | - | chr1_2:4041841-4041860 | Msa0050280:intron | 45.0% | |
TCACAAGACCACTCGTGTTT+GGG | - | chr1_2:4041842-4041861 | Msa0050280:intron | 45.0% | |
AAACGAGACCACACCTGTTA+AGG | - | chr1_2:4041893-4041912 | Msa0050280:intron | 45.0% | |
AACGAGACCACACCTGTTAA+GGG | - | chr1_2:4041894-4041913 | Msa0050280:intron | 45.0% | |
!! | CTGCAGCACTTGAGTTTTGA+CGG | + | chr1_2:4041965-4041984 | None:intergenic | 45.0% |
!! | ATTTAATCAAAAAATAAATT+AGG | - | chr1_2:4039581-4039600 | Msa0050280:CDS | 5.0% |
!!! | CAAAATTAAATTTTTTAATT+AGG | - | chr1_2:4039639-4039658 | Msa0050280:intron | 5.0% |
! | GCGCTACTTTCTCAGTCAAG+TGG | + | chr1_2:4036287-4036306 | None:intergenic | 50.0% |
! | AAAGTAGCGCCGAATAACCG+TGG | - | chr1_2:4036297-4036316 | Msa0050280:three_prime_UTR | 50.0% |
! | AAGTAGCGCCGAATAACCGT+GGG | - | chr1_2:4036298-4036317 | Msa0050280:three_prime_UTR | 50.0% |
CGAATAACCGTGGGAGAGAA+AGG | - | chr1_2:4036307-4036326 | Msa0050280:three_prime_UTR | 50.0% | |
TCATGGGTCGTGGAAAGTAG+CGG | + | chr1_2:4037325-4037344 | None:intergenic | 50.0% | |
!! | GTTTGGGGCATTGGTTTAGC+TGG | - | chr1_2:4037369-4037388 | Msa0050280:intron | 50.0% |
!! | GGGCATTGGTTTAGCTGGAA+GGG | - | chr1_2:4037374-4037393 | Msa0050280:intron | 50.0% |
!! | CATTGGTTTAGCTGGAAGGG+AGG | - | chr1_2:4037377-4037396 | Msa0050280:intron | 50.0% |
GGATAGGGATAGCAAGAGAG+AGG | + | chr1_2:4037905-4037924 | None:intergenic | 50.0% | |
!! | AGCTGTCAGGTACTGGGTTT+GGG | + | chr1_2:4038017-4038036 | None:intergenic | 50.0% |
!! | AAGCTGTCAGGTACTGGGTT+TGG | + | chr1_2:4038018-4038037 | None:intergenic | 50.0% |
TCTTGAGCCTTCCGGACATA+GGG | - | chr1_2:4038355-4038374 | Msa0050280:intron | 50.0% | |
ATCTGGTTGGAGTCTTGGAG+AGG | - | chr1_2:4038449-4038468 | Msa0050280:intron | 50.0% | |
GGAACTAAAGGCGACGAAAC+AGG | + | chr1_2:4038945-4038964 | None:intergenic | 50.0% | |
ACTAGCGTGCAAACAGGCAT+TGG | - | chr1_2:4039397-4039416 | Msa0050280:intron | 50.0% | |
CTAGCGTGCAAACAGGCATT+GGG | - | chr1_2:4039398-4039417 | Msa0050280:intron | 50.0% | |
! | CTCAGTTAATCTGGGACGGA+GGG | + | chr1_2:4039926-4039945 | None:intergenic | 50.0% |
GCTCAGTTATTATGGGACGG+AGG | - | chr1_2:4040190-4040209 | Msa0050280:intron | 50.0% | |
! | GGTCAACTTGGTTGCTGCTT+TGG | - | chr1_2:4040958-4040977 | Msa0050280:intron | 50.0% |
!! | TTGGTTGCTGCTTTGGTTCG+TGG | - | chr1_2:4040965-4040984 | Msa0050280:intron | 50.0% |
CGCTTCTCACAATCATGGGT+TGG | - | chr1_2:4041403-4041422 | Msa0050280:CDS | 50.0% | |
GATGCAGACCGCCTAATTGT+TGG | - | chr1_2:4041425-4041444 | Msa0050280:intron | 50.0% | |
AGATCTCCCTTTGCCATGGA+TGG | + | chr1_2:4041586-4041605 | None:intergenic | 50.0% | |
ATCCATGGCAAAGGGAGATC+TGG | - | chr1_2:4041585-4041604 | Msa0050280:CDS | 50.0% | |
TTCCAGATCTCCCTTTGCCA+TGG | + | chr1_2:4041590-4041609 | None:intergenic | 50.0% | |
GGCACAAATTGCTAGGCTGA+AGG | - | chr1_2:4041671-4041690 | Msa0050280:intron | 50.0% | |
GTGGTCTCAATAAGCTGGTG+TGG | + | chr1_2:4041741-4041760 | None:intergenic | 50.0% | |
CAGGAGTGGTCTCAATAAGC+TGG | + | chr1_2:4041746-4041765 | None:intergenic | 50.0% | |
! | TTTTCGTCCCCAAACAGGAG+TGG | + | chr1_2:4041760-4041779 | None:intergenic | 50.0% |
! | TTTTCGGTCCCAAACAGGAG+TGG | + | chr1_2:4041808-4041827 | None:intergenic | 50.0% |
! | CAGGTGTGGTCTCGTTTTGA+TGG | + | chr1_2:4041890-4041909 | None:intergenic | 50.0% |
! | TTTTCGGCCCTTAACAGGTG+TGG | + | chr1_2:4041904-4041923 | None:intergenic | 50.0% |
CAATCATGGTGCAGTGGCAG+AGG | - | chr1_2:4036829-4036848 | Msa0050280:CDS | 55.0% | |
!! | GGGGCATTGGTTTAGCTGGA+AGG | - | chr1_2:4037373-4037392 | Msa0050280:intron | 55.0% |
GGGTTGTCTCTTGAGCCTTC+CGG | - | chr1_2:4038347-4038366 | Msa0050280:intron | 55.0% | |
CTCTTGAGCCTTCCGGACAT+AGG | - | chr1_2:4038354-4038373 | Msa0050280:intron | 55.0% | |
GGTGGATCTGGTTGGAGTCT+TGG | - | chr1_2:4038444-4038463 | Msa0050280:intron | 55.0% | |
! | GCTCAGTTAATCTGGGACGG+AGG | + | chr1_2:4039927-4039946 | None:intergenic | 55.0% |
GCATAACCAACCGGCACACA+AGG | + | chr1_2:4040577-4040596 | None:intergenic | 55.0% | |
CACACAAGGCAGGGAATGCC+AGG | + | chr1_2:4040563-4040582 | None:intergenic | 60.0% | |
GCATTCCCTGCCTTGTGTGC+CGG | - | chr1_2:4040564-4040583 | Msa0050280:intron | 60.0% | |
ACCAACCGGCACACAAGGCA+GGG | + | chr1_2:4040572-4040591 | None:intergenic | 60.0% | |
AACCAACCGGCACACAAGGC+AGG | + | chr1_2:4040573-4040592 | None:intergenic | 60.0% | |
! | TCCCTGCCTTGTGTGCCGGT+TGG | - | chr1_2:4040568-4040587 | Msa0050280:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 4036266 | 4042229 | 4036266 | ID=Msa0050280;Name=Msa0050280 |
chr1_2 | mRNA | 4036266 | 4042229 | 4036266 | ID=Msa0050280-mRNA-1;Parent=Msa0050280;Name=Msa0050280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|1|1|0.83|0.71|7|237|330 |
chr1_2 | exon | 4036266 | 4036954 | 4036266 | ID=Msa0050280-mRNA-1:exon:1031;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4037049 | 4037115 | 4037049 | ID=Msa0050280-mRNA-1:exon:1030;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4037438 | 4037548 | 4037438 | ID=Msa0050280-mRNA-1:exon:1029;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4039434 | 4039601 | 4039434 | ID=Msa0050280-mRNA-1:exon:1028;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4041362 | 4041435 | 4041362 | ID=Msa0050280-mRNA-1:exon:1027;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4041541 | 4041677 | 4041541 | ID=Msa0050280-mRNA-1:exon:1026;Parent=Msa0050280-mRNA-1 |
chr1_2 | exon | 4042093 | 4042229 | 4042093 | ID=Msa0050280-mRNA-1:exon:1025;Parent=Msa0050280-mRNA-1 |
chr1_2 | five_prime_UTR | 4042093 | 4042229 | 4042093 | ID=Msa0050280-mRNA-1:five_prime_utr;Parent=Msa0050280-mRNA-1 |
chr1_2 | five_prime_UTR | 4041662 | 4041677 | 4041662 | ID=Msa0050280-mRNA-1:five_prime_utr;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4041541 | 4041661 | 4041541 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4041362 | 4041435 | 4041362 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4039434 | 4039601 | 4039434 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4037438 | 4037548 | 4037438 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4037049 | 4037115 | 4037049 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | CDS | 4036503 | 4036954 | 4036503 | ID=Msa0050280-mRNA-1:cds;Parent=Msa0050280-mRNA-1 |
chr1_2 | three_prime_UTR | 4036266 | 4036502 | 4036266 | ID=Msa0050280-mRNA-1:three_prime_utr;Parent=Msa0050280-mRNA-1 |
Gene Sequence |
Protein sequence |