AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330410 MtrunA17_Chr4g0058711 97.248 327 5 1 1 327 1 323 0.0 644
Msa1330410 MtrunA17_Chr3g0117171 69.565 322 89 4 1 321 1 314 3.84e-147 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330410 AT3G54170.1 61.644 292 98 5 9 299 6 284 1.82e-118 345

Find 106 sgRNAs with CRISPR-Local

Find 583 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGGCTTGGTCTTGGGCT+TGG 0.189587 8_4:+49553818 None:intergenic
AAGGTAATTAATCACCAATT+TGG 0.198806 8_4:+49551653 None:intergenic
TACGATAGTTATAATTCTTA+TGG 0.214687 8_4:+49544942 None:intergenic
TGAAGAGTTTACACGGTTAA+AGG 0.230891 8_4:-49548860 Msa1330410:intron
CTCAGCTTCTCTCCGATTCT+AGG 0.243687 8_4:-49553662 Msa1330410:five_prime_UTR
TTCGGCTTGGTCTTGGGCTT+GGG 0.274871 8_4:+49553819 None:intergenic
ATGCTTTCTAGTACCCAAAT+TGG 0.286019 8_4:-49551667 Msa1330410:intron
CAACAGCAGGAATTTGATTT+CGG 0.289698 8_4:-49553525 Msa1330410:intron
CTGAACAAAGAAATGAAAAT+TGG 0.303105 8_4:+49553794 None:intergenic
CGATTTACCGGAACACGTTC+AGG 0.304950 8_4:-49553498 Msa1330410:intron
TTAACCGTGTAAACTCTTCA+TGG 0.307146 8_4:+49548863 None:intergenic
ATTGGACTTCGGCTTGGTCT+TGG 0.309560 8_4:+49553812 None:intergenic
GTAAACTCTTCATGGATTAC+TGG 0.327302 8_4:+49548871 None:intergenic
TTCTACTTCAGCTGTCGTTT+TGG 0.332049 8_4:+49553215 None:intergenic
GAATTACGTCGTCGAGAGTT+GGG 0.342049 8_4:+49553614 None:intergenic
GCTTGAAAAGGCAAAGAAAA+AGG 0.349170 8_4:-49551490 Msa1330410:CDS
GCAACTTCCCCATCTTGCTT+TGG 0.351234 8_4:+49547252 None:intergenic
TTGGACTTCGGCTTGGTCTT+GGG 0.356924 8_4:+49553813 None:intergenic
ATTTGATCTTTCCACATCAT+TGG 0.357734 8_4:+49545919 None:intergenic
CAACTTCCCCATCTTGCTTT+GGG 0.360695 8_4:+49547253 None:intergenic
AGGTAATTAATCACCAATTT+GGG 0.361400 8_4:+49551654 None:intergenic
AGTAAAACCTGAACGTGTTC+CGG 0.389438 8_4:+49553491 None:intergenic
ATAGAATTTAGTTGCGGAAA+AGG 0.391098 8_4:-49547327 Msa1330410:intron
GAGCTCAGAAATCAATTTGA+AGG 0.391677 8_4:-49546804 Msa1330410:intron
GCTGAAGTAGAAGCTGCTTC+TGG 0.396795 8_4:-49553204 Msa1330410:CDS
GATTCAGTCACGGTGGCGTA+TGG 0.400512 8_4:+49544911 None:intergenic
GAATAAAATGATAAACTAGT+AGG 0.402242 8_4:-49553897 None:intergenic
CTGATGATTTCAGTGCTTGA+AGG 0.408490 8_4:+49551634 None:intergenic
TACAGAGTTGCAGAAACATA+TGG 0.411106 8_4:-49545951 Msa1330410:CDS
AGTAGGGTGGTCGAGAAGTA+TGG 0.415038 8_4:-49553880 Msa1330410:five_prime_UTR
CAAGAGGAAAATGAAGAGAT+TGG 0.415809 8_4:-49547206 Msa1330410:CDS
AGTAGAGTCCTTAGCGGATC+AGG 0.430293 8_4:-49551613 Msa1330410:intron
AGAATTACGTCGTCGAGAGT+TGG 0.443671 8_4:+49553613 None:intergenic
TTGGCTTGAGTTGAGCTTTG+AGG 0.443751 8_4:+49549769 None:intergenic
ATTTGCTCTCCCGTTCTCTC+TGG 0.447211 8_4:+49545165 None:intergenic
CTGAGTGAAGTAGCTGTTGC+TGG 0.458633 8_4:+49553680 None:intergenic
TTTACTTCCCAAAGCAAGAT+GGG 0.460062 8_4:-49547260 Msa1330410:CDS
GATTTCGGAGAACGATTTAC+CGG 0.460869 8_4:-49553510 Msa1330410:CDS
TGGGGAAGACATGGTGAAGC+TGG 0.462098 8_4:+49553633 None:intergenic
CACAATACGAGATTCAGAAT+TGG 0.466801 8_4:-49551862 Msa1330410:CDS
AAGTAGCTGTTGCTGGTACT+TGG 0.471985 8_4:+49553687 None:intergenic
CAAATGCAGCACGTAATGCC+AGG 0.472508 8_4:-49545147 Msa1330410:exon
TCTTCTGCTGAATTTGATGA+TGG 0.474662 8_4:-49553366 Msa1330410:CDS
ACAATTTCAGTCTGCTGTAC+GGG 0.475571 8_4:-49549793 Msa1330410:intron
TTGCAGTCTTCAAGACTGTA+AGG 0.477309 8_4:-49553048 Msa1330410:intron
ATGAAAATTGGACTTCGGCT+TGG 0.483132 8_4:+49553806 None:intergenic
GCTGCTTCTGGTGTTACAAC+CGG 0.483880 8_4:-49553192 Msa1330410:CDS
AACAATTTCAGTCTGCTGTA+CGG 0.486423 8_4:-49549794 Msa1330410:intron
ATTTACTTCCCAAAGCAAGA+TGG 0.488868 8_4:-49547261 Msa1330410:CDS
GCGAAGAGACAAAATCATTC+CGG 0.489304 8_4:+49553173 None:intergenic
TCAGCTTCTCTCCGATTCTA+GGG 0.490433 8_4:-49553661 Msa1330410:five_prime_UTR
GATTGGGCTTCAAGCTTCTG+AGG 0.495982 8_4:-49547189 Msa1330410:CDS
CAAGATGGGGAAGTTGCTAA+TGG 0.504381 8_4:-49547246 Msa1330410:CDS
AAGAGGAAAATGAAGAGATT+GGG 0.505513 8_4:-49547205 Msa1330410:CDS
ATGTTCAACTCCATATGTTC+AGG 0.506370 8_4:-49544879 Msa1330410:three_prime_UTR
TATGTTACCTTCTTTCCGTA+AGG 0.506425 8_4:+49553327 None:intergenic
AATGCACCATTCATACCTGC+TGG 0.506971 8_4:-49551824 Msa1330410:CDS
TAGATACTGTAAGTCATAAG+AGG 0.508307 8_4:-49553389 Msa1330410:CDS
AACAATACCTGCATTGATGT+TGG 0.525374 8_4:+49549750 None:intergenic
AATAAAATGATAAACTAGTA+GGG 0.529613 8_4:-49553896 Msa1330410:five_prime_UTR
TATTTGTTATCAGCTTGAAA+AGG 0.532310 8_4:-49551502 Msa1330410:intron
GCTTCAAGCTTCTGAGGGAA+AGG 0.532560 8_4:-49547183 Msa1330410:intron
TATATTTAAGAATGAACTTG+AGG 0.535382 8_4:-49551888 Msa1330410:intron
GTGGTCCCAGCAGGTATGAA+TGG 0.536045 8_4:+49551818 None:intergenic
AAGAAATGAAAATTGGACTT+CGG 0.536484 8_4:+49553801 None:intergenic
GAAATGGTTAATTACTTCTG+TGG 0.537939 8_4:-49545057 Msa1330410:three_prime_UTR
TAATGATCCTTACGGAAAGA+AGG 0.539652 8_4:-49553334 Msa1330410:intron
ATTCAGTCACGGTGGCGTAT+GGG 0.542914 8_4:+49544912 None:intergenic
AGTATCATCTCGTCAATCCC+TGG 0.546748 8_4:+49545129 None:intergenic
TAACCTGGTGTGGTCCCAGC+AGG 0.549468 8_4:+49551809 None:intergenic
ATACCTGCTGGGACCACACC+AGG 0.553859 8_4:-49551812 Msa1330410:intron
TATTTAAATTGCAGGCAAGA+AGG 0.559968 8_4:-49548906 Msa1330410:intron
AATTACGTCGTCGAGAGTTG+GGG 0.561904 8_4:+49553615 None:intergenic
TGTGGAAAGATCAAATGAAA+CGG 0.567946 8_4:-49545912 Msa1330410:intron
CTTGGGAGAGATGAAAATGA+GGG 0.573038 8_4:+49553836 None:intergenic
AGGGTGGTCGAGAAGTATGG+TGG 0.576529 8_4:-49553877 Msa1330410:five_prime_UTR
GGAAACGCTTGATTCGTGCT+TGG 0.577281 8_4:-49553027 Msa1330410:intron
GCAAGGTAAATTAGACGAGA+AGG 0.580209 8_4:-49545234 Msa1330410:CDS
ATCATCAGTAGAGTCCTTAG+CGG 0.584514 8_4:-49551619 Msa1330410:CDS
GTTGCTGGTACTTGGAGTAG+AGG 0.585831 8_4:+49553695 None:intergenic
ATTGGGCTTCAAGCTTCTGA+GGG 0.585994 8_4:-49547188 Msa1330410:CDS
ACTCAAGCCAACATCAATGC+AGG 0.586843 8_4:-49549757 Msa1330410:intron
CAGTCACGGTGGCGTATGGG+TGG 0.590923 8_4:+49544915 None:intergenic
GTCGAGAGTTGGGGAAGACA+TGG 0.592053 8_4:+49553624 None:intergenic
CTCATCATAGAATTTAGTTG+CGG 0.594727 8_4:-49547333 Msa1330410:intron
TAAATGTAAAACTCTGCAAG+AGG 0.603180 8_4:-49547222 Msa1330410:CDS
GGAAAAGGACACAAGACTAA+AGG 0.604232 8_4:-49547312 Msa1330410:CDS
TGGATTTGAGAAAATTGTTG+AGG 0.604732 8_4:-49544847 Msa1330410:three_prime_UTR
ATGCACCATTCATACCTGCT+GGG 0.605615 8_4:-49551823 Msa1330410:CDS
GGGTGGTCGAGAAGTATGGT+GGG 0.607491 8_4:-49553876 Msa1330410:five_prime_UTR
AACTGTGATTTACTATTGCT+AGG 0.621168 8_4:-49544969 Msa1330410:three_prime_UTR
GCTTGGGAGAGATGAAAATG+AGG 0.622456 8_4:+49553835 None:intergenic
TGAACATATGGAGTTGAACA+TGG 0.622874 8_4:+49544881 None:intergenic
GAGTTGCAGAAACATATGGA+TGG 0.624763 8_4:-49545947 Msa1330410:CDS
GGATGGATTGACCAATGATG+TGG 0.632932 8_4:-49545930 Msa1330410:CDS
GCAAGAGATAGCAAAGCTGA+AGG 0.638072 8_4:-49551433 Msa1330410:intron
TTACTTCCCAAAGCAAGATG+GGG 0.638560 8_4:-49547259 Msa1330410:CDS
ACGTACAAACTAACCTGGTG+TGG 0.639868 8_4:+49551799 None:intergenic
AAATGCAGCACGTAATGCCA+GGG 0.649838 8_4:-49545146 Msa1330410:exon
TTGGGAGAGATGAAAATGAG+GGG 0.653039 8_4:+49553837 None:intergenic
TGGGAGAGATGAAAATGAGG+GGG 0.656863 8_4:+49553838 None:intergenic
TAATCCATGAAGAGTTTACA+CGG 0.672722 8_4:-49548867 Msa1330410:CDS
AAAATGATAAACTAGTAGGG+TGG 0.673724 8_4:-49553893 Msa1330410:five_prime_UTR
TGGTACTCATGATTCAGTCA+CGG 0.682177 8_4:+49544901 None:intergenic
TGTGATTTACTATTGCTAGG+TGG 0.700981 8_4:-49544966 Msa1330410:three_prime_UTR
TACTCATGATTCAGTCACGG+TGG 0.745180 8_4:+49544904 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTAAAATATATTG+TGG - chr8_4:49548095-49548114 Msa1330410:intron 10.0%
!! AAAAAGATTCAATTAAAATA+CGG + chr8_4:49548344-49548363 None:intergenic 10.0%
!!! TTAAATCAATTTTGATTTTT+TGG - chr8_4:49549936-49549955 Msa1330410:intron 10.0%
!! ATAAATTAATATATATGTAG+CGG + chr8_4:49550319-49550338 None:intergenic 10.0%
!!! ATAAATATTTTTTTTTCTCT+TGG + chr8_4:49550569-49550588 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549287-49549306 Msa1330410:intron 100.0%
!! TAAATTGAAAATTGTAATGT+TGG - chr8_4:49545489-49545508 Msa1330410:intron 15.0%
!!! CTTTTAAATTATGTTATTGA+AGG - chr8_4:49546001-49546020 Msa1330410:intron 15.0%
!! AAAAAAATAGTGAAAAAAGA+GGG + chr8_4:49546376-49546395 None:intergenic 15.0%
!! TAAAAAAGAAATAATTTCTC+AGG + chr8_4:49547054-49547073 None:intergenic 15.0%
!! ATAAATATGATCAATGTATA+AGG + chr8_4:49547200-49547219 None:intergenic 15.0%
!!! AAAATCATTTTTCATGTTTT+AGG - chr8_4:49547747-49547766 Msa1330410:intron 15.0%
!! ATAGTATTAGTATTTAGTAT+TGG + chr8_4:49548232-49548251 None:intergenic 15.0%
!! ACCATAAACATATATTTAAT+GGG + chr8_4:49549664-49549683 None:intergenic 15.0%
!! TACCATAAACATATATTTAA+TGG + chr8_4:49549665-49549684 None:intergenic 15.0%
!! ATTGCTAATGTAAAAAATAT+AGG - chr8_4:49550284-49550303 Msa1330410:intron 15.0%
!!! TGTATTTTGATTTTCATTTT+AGG + chr8_4:49550352-49550371 None:intergenic 15.0%
!!! AAGAAAAAACACTTTTATTT+AGG - chr8_4:49550804-49550823 Msa1330410:intron 15.0%
!! ATAAACAATATTGACAAATT+AGG + chr8_4:49551823-49551842 None:intergenic 15.0%
!! TCAATGTATGTTTAAAAAAA+GGG + chr8_4:49552313-49552332 None:intergenic 15.0%
!! AATCAAAGATAAAATAATGA+CGG - chr8_4:49552461-49552480 Msa1330410:intron 15.0%
!! TATTAACTTAGTAATGATAA+AGG - chr8_4:49552560-49552579 Msa1330410:intron 15.0%
!!! ATTAAAAGTTATGCAATTTT+TGG - chr8_4:49552716-49552735 Msa1330410:intron 15.0%
!!! ATTAACATGTGAATTTTTTG+AGG + chr8_4:49545280-49545299 None:intergenic 20.0%
!! TTACAGTATCTAATTCATAA+CGG + chr8_4:49545343-49545362 None:intergenic 20.0%
!!! AATTTTGATAATGATCCTTA+CGG - chr8_4:49545398-49545417 Msa1330410:intron 20.0%
!!! AAAAATCCAGTAAGAATTTT+AGG + chr8_4:49545656-49545675 None:intergenic 20.0%
!!! GACAGATTTTATATACTTTA+GGG + chr8_4:49545872-49545891 None:intergenic 20.0%
!!! TGACAGATTTTATATACTTT+AGG + chr8_4:49545873-49545892 None:intergenic 20.0%
!!! TGACGGATTTTATATAATTT+AGG - chr8_4:49545927-49545946 Msa1330410:CDS 20.0%
!!! GACGGATTTTATATAATTTA+GGG - chr8_4:49545928-49545947 Msa1330410:CDS 20.0%
!! AATTATGTTATTGAAGGAAA+TGG - chr8_4:49546007-49546026 Msa1330410:intron 20.0%
!! CAAAAAAATAGTGAAAAAAG+AGG + chr8_4:49546377-49546396 None:intergenic 20.0%
!! GAAATAAATAGAGAAAATAG+AGG + chr8_4:49546458-49546477 None:intergenic 20.0%
!! TATATTTAAGAATGAACTTG+AGG - chr8_4:49546852-49546871 Msa1330410:CDS 20.0%
!!! ATAGAATTTTAGATTCTGAA+TGG + chr8_4:49547158-49547177 None:intergenic 20.0%
!!! TTCTATTTTTTGCTTCAAAA+TGG - chr8_4:49547172-49547191 Msa1330410:intron 20.0%
!! TAACAAATATAAATGTCGAA+GGG + chr8_4:49547227-49547246 None:intergenic 20.0%
!! ATAACAAATATAAATGTCGA+AGG + chr8_4:49547228-49547247 None:intergenic 20.0%
!! TTAATTATATATTCTCTCCT+GGG + chr8_4:49547416-49547435 None:intergenic 20.0%
!! TTAACAGAATAAGAAGAAAT+TGG - chr8_4:49547432-49547451 Msa1330410:intron 20.0%
!!! TTACACACAAAATGATTTTT+GGG + chr8_4:49547830-49547849 None:intergenic 20.0%
!!! ATTACACACAAAATGATTTT+TGG + chr8_4:49547831-49547850 None:intergenic 20.0%
!!! TTAGATAAGTTTTGATAACA+TGG - chr8_4:49548442-49548461 Msa1330410:intron 20.0%
!! AACATTGTATTAGAATCATT+GGG + chr8_4:49548579-49548598 None:intergenic 20.0%
!! TAACATTGTATTAGAATCAT+TGG + chr8_4:49548580-49548599 None:intergenic 20.0%
!! TGAAATGTGTTGTAATAATA+GGG + chr8_4:49548646-49548665 None:intergenic 20.0%
!!! TATTATTTTACAGATGTTAG+TGG - chr8_4:49548860-49548879 Msa1330410:intron 20.0%
!! TATGTTGTATGACATTTAAT+AGG - chr8_4:49549186-49549205 Msa1330410:intron 20.0%
!! TCCCATTAAATATATGTTTA+TGG - chr8_4:49549660-49549679 Msa1330410:intron 20.0%
!! TCTAAAAAGTTATCAAATAG+CGG - chr8_4:49549701-49549720 Msa1330410:intron 20.0%
!! ATAGGAGCTTATTATATTTA+GGG - chr8_4:49550191-49550210 Msa1330410:intron 20.0%
!!! GACATATTTTTTCTTCAAAT+GGG - chr8_4:49550213-49550232 Msa1330410:intron 20.0%
!!! ACATATTTTTTCTTCAAATG+GGG - chr8_4:49550214-49550233 Msa1330410:intron 20.0%
!!! AGAAATATTTTTTTCTCTCT+TGG + chr8_4:49550704-49550723 None:intergenic 20.0%
!! TCTTTAATTAATATGAAGCA+CGG + chr8_4:49550913-49550932 None:intergenic 20.0%
!! TGCTTCATATTAATTAAAGA+CGG - chr8_4:49550913-49550932 Msa1330410:intron 20.0%
!! GCAAAAAGAAATAAAAAAGA+AGG + chr8_4:49551857-49551876 None:intergenic 20.0%
!!! CTTTTTTATTTCTTTTTGCT+TGG - chr8_4:49551858-49551877 Msa1330410:CDS 20.0%
!! CTCAATGTATGTTTAAAAAA+AGG + chr8_4:49552314-49552333 None:intergenic 20.0%
!!! GTGTTAGATAATAAAGTATT+GGG + chr8_4:49552600-49552619 None:intergenic 20.0%
!! AGTGTTAGATAATAAAGTAT+TGG + chr8_4:49552601-49552620 None:intergenic 20.0%
!! ACTTAATAGTATTATTGTGT+GGG - chr8_4:49552618-49552637 Msa1330410:intron 20.0%
!! ATGTTATAAGATTGAAAACT+AGG - chr8_4:49552692-49552711 Msa1330410:intron 20.0%
!! TGTTATAAGATTGAAAACTA+GGG - chr8_4:49552693-49552712 Msa1330410:intron 20.0%
!! AATACAATTAACAAAGCTTA+GGG + chr8_4:49553253-49553272 None:intergenic 20.0%
!! AAATACAATTAACAAAGCTT+AGG + chr8_4:49553254-49553273 None:intergenic 20.0%
!!! ATTGTATTTCGCATTTTTTA+TGG - chr8_4:49553265-49553284 Msa1330410:intron 20.0%
!! TACGATAGTTATAATTCTTA+TGG + chr8_4:49553801-49553820 None:intergenic 20.0%
! AAGAAATGAAAATTGGACTT+CGG + chr8_4:49544942-49544961 None:intergenic 25.0%
! CTGAACAAAGAAATGAAAAT+TGG + chr8_4:49544949-49544968 None:intergenic 25.0%
!! ATTCCAATAAACCATTGATT+TGG - chr8_4:49545786-49545805 Msa1330410:intron 25.0%
! TACATAATTTAGGGACTAAA+TGG + chr8_4:49545834-49545853 None:intergenic 25.0%
!!! TATTTTAGGGACTAAATTGA+TGG - chr8_4:49545972-49545991 Msa1330410:intron 25.0%
! ATATGCACATTAAATTCCTT+AGG + chr8_4:49546113-49546132 None:intergenic 25.0%
! AGTTACATATATAACAGTCT+AGG - chr8_4:49546652-49546671 Msa1330410:intron 25.0%
! TCTTTCCTAAAATTGTTTAC+TGG - chr8_4:49546822-49546841 Msa1330410:CDS 25.0%
!! ATGATCCAGTAAACAATTTT+AGG + chr8_4:49546830-49546849 None:intergenic 25.0%
! AGGTAATTAATCACCAATTT+GGG + chr8_4:49547089-49547108 None:intergenic 25.0%
! AAGGTAATTAATCACCAATT+TGG + chr8_4:49547090-49547109 None:intergenic 25.0%
!!! TATTTGTTATCAGCTTGAAA+AGG - chr8_4:49547238-49547257 Msa1330410:CDS 25.0%
! AAACTGTTCTTTATAGTATC+TGG - chr8_4:49547343-49547362 Msa1330410:intron 25.0%
! TAATTATATATTCTCTCCTG+GGG + chr8_4:49547415-49547434 None:intergenic 25.0%
! GTTAATTATATATTCTCTCC+TGG + chr8_4:49547417-49547436 None:intergenic 25.0%
!!! AGGTGTTTTTTTTTTTTGAG+AGG - chr8_4:49547767-49547786 Msa1330410:intron 25.0%
!! CATAAAAGAATGCTTTTAAC+AGG + chr8_4:49547981-49548000 None:intergenic 25.0%
!! TTTCAATTTGTCATTTATCG+AGG - chr8_4:49548118-49548137 Msa1330410:intron 25.0%
! TATTTGATTCTGTATTCAGT+TGG - chr8_4:49548180-49548199 Msa1330410:intron 25.0%
! ATTTGATTCTGTATTCAGTT+GGG - chr8_4:49548181-49548200 Msa1330410:intron 25.0%
!! CTTTTGTAATGACTAAAAGT+TGG + chr8_4:49548283-49548302 None:intergenic 25.0%
! AAGATTCAATTAAAATACGG+TGG + chr8_4:49548341-49548360 None:intergenic 25.0%
! TTTGTTCAAAACTGTGTTAT+GGG + chr8_4:49548380-49548399 None:intergenic 25.0%
! ATTTGTTCAAAACTGTGTTA+TGG + chr8_4:49548381-49548400 None:intergenic 25.0%
! TAATAATAGGGTTTAGATAG+AGG + chr8_4:49548634-49548653 None:intergenic 25.0%
! GTGAAATGTGTTGTAATAAT+AGG + chr8_4:49548647-49548666 None:intergenic 25.0%
!!! ATTTTGAAACCAATTCATTC+TGG - chr8_4:49548706-49548725 Msa1330410:intron 25.0%
!! TCATGCATATTAATTTGAGA+AGG - chr8_4:49549077-49549096 Msa1330410:intron 25.0%
!! CATGCATATTAATTTGAGAA+GGG - chr8_4:49549078-49549097 Msa1330410:intron 25.0%
! AGTCATAAACAATATCTAAG+TGG + chr8_4:49549131-49549150 None:intergenic 25.0%
! AAGTGATTGCACAATATTAT+TGG - chr8_4:49549211-49549230 Msa1330410:intron 25.0%
! TGTGGTTGTTATCAATATTA+AGG - chr8_4:49549354-49549373 Msa1330410:intron 25.0%
! AAACATAAGGCAATAATTTC+GGG + chr8_4:49549808-49549827 None:intergenic 25.0%
! CAAACATAAGGCAATAATTT+CGG + chr8_4:49549809-49549828 None:intergenic 25.0%
! TTAAATAGCAACCAAACATA+AGG + chr8_4:49549821-49549840 None:intergenic 25.0%
! ATCAAATGGTCTAACATTAA+AGG + chr8_4:49550071-49550090 None:intergenic 25.0%
! AATAAGAACCCCAAATTAAA+GGG + chr8_4:49550110-49550129 None:intergenic 25.0%
! TAATAAGAACCCCAAATTAA+AGG + chr8_4:49550111-49550130 None:intergenic 25.0%
!!! TTTAATTTGGGGTTCTTATT+AGG - chr8_4:49550110-49550129 Msa1330410:intron 25.0%
!! TTAATTTGGGGTTCTTATTA+GGG - chr8_4:49550111-49550130 Msa1330410:intron 25.0%
! CATAGGAGCTTATTATATTT+AGG - chr8_4:49550190-49550209 Msa1330410:intron 25.0%
!!! GGACATATTTTTTCTTCAAA+TGG - chr8_4:49550212-49550231 Msa1330410:intron 25.0%
! ACATATGTATCTCATGTATA+CGG - chr8_4:49550669-49550688 Msa1330410:intron 25.0%
! TTCATATTAATTAAAGACGG+AGG - chr8_4:49550916-49550935 Msa1330410:intron 25.0%
! TCATATTAATTAAAGACGGA+GGG - chr8_4:49550917-49550936 Msa1330410:intron 25.0%
!! TTTTTGCGAAAAAAAGAGAA+AGG - chr8_4:49550971-49550990 Msa1330410:intron 25.0%
!! AGTTATCATTTTCATCTGTA+TGG + chr8_4:49551048-49551067 None:intergenic 25.0%
! AGATGAAAATGATAACTTCT+AGG - chr8_4:49551051-49551070 Msa1330410:intron 25.0%
!! CTTTAATTTCAGTGATGAAT+CGG - chr8_4:49551127-49551146 Msa1330410:intron 25.0%
! CTAATATATGTAGGAAATTG+GGG + chr8_4:49551312-49551331 None:intergenic 25.0%
! CCTAATATATGTAGGAAATT+GGG + chr8_4:49551313-49551332 None:intergenic 25.0%
! TCCTAATATATGTAGGAAAT+TGG + chr8_4:49551314-49551333 None:intergenic 25.0%
! TTCCTACATATATTAGGAAT+TGG - chr8_4:49551316-49551335 Msa1330410:intron 25.0%
! AACCAATTCCTAATATATGT+AGG + chr8_4:49551321-49551340 None:intergenic 25.0%
! AACTGAGAAAACAAAGTTTA+TGG - chr8_4:49551737-49551756 Msa1330410:intron 25.0%
! AGTTTATGGTATTTATTGAC+TGG - chr8_4:49551751-49551770 Msa1330410:intron 25.0%
! TAGCCATGTAATGATATAAA+GGG + chr8_4:49552015-49552034 None:intergenic 25.0%
! TGTTTCTTCTGTTACTATAT+TGG - chr8_4:49552048-49552067 Msa1330410:intron 25.0%
! TAAACATACATTGAGAATAG+AGG - chr8_4:49552117-49552136 Msa1330410:intron 25.0%
! AAACATACATTGAGAATAGA+GGG - chr8_4:49552118-49552137 Msa1330410:intron 25.0%
! TATTGAGAAAATTACATGTG+TGG - chr8_4:49552365-49552384 Msa1330410:intron 25.0%
! ATTGAGAAAATTACATGTGT+GGG - chr8_4:49552366-49552385 Msa1330410:intron 25.0%
! CAATAGCTTAATACTACAAA+AGG - chr8_4:49552505-49552524 Msa1330410:intron 25.0%
! TACTAAGTTAATAGTCTGTT+AGG + chr8_4:49552553-49552572 None:intergenic 25.0%
! CACTTAATAGTATTATTGTG+TGG - chr8_4:49552617-49552636 Msa1330410:intron 25.0%
!!! CAGTGAAGTTTTTTAAATCA+CGG + chr8_4:49552883-49552902 None:intergenic 25.0%
!!! ATGAAGATAAGCATTGTTTT+AGG - chr8_4:49552964-49552983 Msa1330410:intron 25.0%
!! TCAACAAAACTTTTGTCTTA+GGG - chr8_4:49553003-49553022 Msa1330410:intron 25.0%
! CACAAATGCTAATATGAAAT+AGG - chr8_4:49553043-49553062 Msa1330410:CDS 25.0%
! TTTGAGTGATAAGAAAATCA+TGG - chr8_4:49553131-49553150 Msa1330410:intron 25.0%
! TTGAGTGATAAGAAAATCAT+GGG - chr8_4:49553132-49553151 Msa1330410:intron 25.0%
! ATACAATTAACAAAGCTTAG+GGG + chr8_4:49553252-49553271 None:intergenic 25.0%
! ATGTTTGTATTGTGTAAATG+TGG - chr8_4:49553296-49553315 Msa1330410:intron 25.0%
!!! TTTTATGCCGTTATTTTTCA+AGG - chr8_4:49553331-49553350 Msa1330410:intron 25.0%
!!! TTTATGCCGTTATTTTTCAA+GGG - chr8_4:49553332-49553351 Msa1330410:intron 25.0%
! ACAATTAAACAAGAATACCA+TGG + chr8_4:49553433-49553452 None:intergenic 25.0%
!! TATTCTTGTTTAATTGTCCA+AGG - chr8_4:49553436-49553455 Msa1330410:intron 25.0%
!! AGATTTTAAACAGATATCAC+TGG - chr8_4:49553639-49553658 Msa1330410:exon 25.0%
!!! GACTTCAATTTTTTTGTTGT+CGG - chr8_4:49553661-49553680 Msa1330410:five_prime_UTR 25.0%
!!! AATTTTTTTGTTGTCGGAAA+TGG - chr8_4:49553667-49553686 Msa1330410:five_prime_UTR 25.0%
AAAATGATAAACTAGTAGGG+TGG - chr8_4:49544847-49544866 Msa1330410:three_prime_UTR 30.0%
TAGATACTGTAAGTCATAAG+AGG - chr8_4:49545351-49545370 Msa1330410:intron 30.0%
TTTCAGCCTAAAATTCTTAC+TGG - chr8_4:49545647-49545666 Msa1330410:intron 30.0%
! ATAGTTTAGGACCAAATCAA+TGG + chr8_4:49545800-49545819 None:intergenic 30.0%
GATGTTAAGGACTAAATTGA+CGG - chr8_4:49545910-49545929 Msa1330410:intron 30.0%
TACATGAATCTAACCCTAAA+TGG + chr8_4:49546164-49546183 None:intergenic 30.0%
! TTTAGGGTTAGATTCATGTA+TGG - chr8_4:49546164-49546183 Msa1330410:intron 30.0%
CGAAAAAACAGAGAAAATAG+AGG + chr8_4:49546417-49546436 None:intergenic 30.0%
!!! ATTTTCTCTGTTTTTTCGCT+TGG - chr8_4:49546419-49546438 Msa1330410:intron 30.0%
GGAAAGAAAAAGCTATAACT+AGG + chr8_4:49546809-49546828 None:intergenic 30.0%
AATTATATATTCTCTCCTGG+GGG + chr8_4:49547414-49547433 None:intergenic 30.0%
AAGTAAAACGACACTTGTTT+GGG + chr8_4:49547640-49547659 None:intergenic 30.0%
AAAGTAAAACGACACTTGTT+TGG + chr8_4:49547641-49547660 None:intergenic 30.0%
GTATTGCTTGAAAGATAAGA+TGG + chr8_4:49547899-49547918 None:intergenic 30.0%
AATATAAGCTCCGTAAAACA+TGG + chr8_4:49547942-49547961 None:intergenic 30.0%
AATACTATAACCAGTACTCT+AGG - chr8_4:49548244-49548263 Msa1330410:intron 30.0%
!! TAAAATACGGTGGTTACTTT+TGG + chr8_4:49548331-49548350 None:intergenic 30.0%
CACATTTCACAATTCGTTAT+AGG - chr8_4:49548657-49548676 Msa1330410:intron 30.0%
AATTCGTTATAGGAACTGTA+TGG - chr8_4:49548667-49548686 Msa1330410:intron 30.0%
ATCAAGACTCAACAATCATA+TGG + chr8_4:49548751-49548770 None:intergenic 30.0%
! ACTTTCATTTTCCATATGTC+AGG - chr8_4:49548787-49548806 Msa1330410:intron 30.0%
AAATACAAACACCTGACATA+TGG + chr8_4:49548801-49548820 None:intergenic 30.0%
GATACACTCAAATACTTGTA+TGG + chr8_4:49549018-49549037 None:intergenic 30.0%
TTATTGGATGATTTCATGCT+AGG - chr8_4:49549227-49549246 Msa1330410:intron 30.0%
!!! CGCTTATTTTATTCTTGTCT+TGG + chr8_4:49549325-49549344 None:intergenic 30.0%
TACCAACAAAACTCAAATGA+GGG + chr8_4:49549560-49549579 None:intergenic 30.0%
ATACCAACAAAACTCAAATG+AGG + chr8_4:49549561-49549580 None:intergenic 30.0%
CGAAATTATTGCCTTATGTT+TGG - chr8_4:49549807-49549826 Msa1330410:intron 30.0%
!! TTGGTTGCTATTTAAATTGC+AGG - chr8_4:49549826-49549845 Msa1330410:intron 30.0%
TATTTAAATTGCAGGCAAGA+AGG - chr8_4:49549834-49549853 Msa1330410:intron 30.0%
TAATCCATGAAGAGTTTACA+CGG - chr8_4:49549873-49549892 Msa1330410:intron 30.0%
!!! TTGATTTTTTGGCATGAAGT+CGG - chr8_4:49549947-49549966 Msa1330410:intron 30.0%
!!! TCGGGTAAATGTTTTAATTC+AGG - chr8_4:49549966-49549985 Msa1330410:intron 30.0%
ATAAAACTATGACGACAACA+TGG + chr8_4:49550013-49550032 None:intergenic 30.0%
TAATGTTAGACCATTTGATG+AGG - chr8_4:49550072-49550091 Msa1330410:intron 30.0%
AATGTTAGACCATTTGATGA+GGG - chr8_4:49550073-49550092 Msa1330410:intron 30.0%
! TAATTTGGGGTTCTTATTAG+GGG - chr8_4:49550112-49550131 Msa1330410:intron 30.0%
CAAACATAGCCCTTATTAAT+GGG + chr8_4:49550140-49550159 None:intergenic 30.0%
TAATATATATGTAGCGGTGT+CGG + chr8_4:49550313-49550332 None:intergenic 30.0%
TTGAGAAACGTTGATCAATT+AGG + chr8_4:49550513-49550532 None:intergenic 30.0%
TTGAGAAACGTTGATCAATT+AGG + chr8_4:49550513-49550532 None:intergenic 30.0%
TATGAGTGTTATATAGGTGT+CGG - chr8_4:49550756-49550775 Msa1330410:intron 30.0%
AAAAAAGAGAAAGGTGGAAA+TGG - chr8_4:49550980-49550999 Msa1330410:intron 30.0%
AAAAAGAGAAAGGTGGAAAT+GGG - chr8_4:49550981-49551000 Msa1330410:intron 30.0%
! TTCTCTCTAGTTTGATTATC+TGG - chr8_4:49551010-49551029 Msa1330410:intron 30.0%
AAATGATAACTTCTAGGTGT+TGG - chr8_4:49551057-49551076 Msa1330410:intron 30.0%
AATGATAACTTCTAGGTGTT+GGG - chr8_4:49551058-49551077 Msa1330410:intron 30.0%
ATAAGTTTCTGAGTTGTGTT+TGG - chr8_4:49551161-49551180 Msa1330410:intron 30.0%
CCCAATTTCCTACATATATT+AGG - chr8_4:49551310-49551329 Msa1330410:intron 30.0%
TATAGACGCATTATTCACAT+TGG - chr8_4:49551349-49551368 Msa1330410:intron 30.0%
! GAAGTCTTGTAAAAAAGAGT+TGG + chr8_4:49551383-49551402 None:intergenic 30.0%
CTCATCATAGAATTTAGTTG+CGG - chr8_4:49551407-49551426 Msa1330410:intron 30.0%
ATAGAATTTAGTTGCGGAAA+AGG - chr8_4:49551413-49551432 Msa1330410:intron 30.0%
TAAATGTAAAACTCTGCAAG+AGG - chr8_4:49551518-49551537 Msa1330410:intron 30.0%
AAGAGGAAAATGAAGAGATT+GGG - chr8_4:49551535-49551554 Msa1330410:intron 30.0%
TACCTCATTCATTTCAAAGT+TGG - chr8_4:49551641-49551660 Msa1330410:CDS 30.0%
!! AACCAACTTTGAAATGAATG+AGG + chr8_4:49551646-49551665 None:intergenic 30.0%
ACAGCAGATATATAGAATGT+GGG + chr8_4:49551677-49551696 None:intergenic 30.0%
TACAGCAGATATATAGAATG+TGG + chr8_4:49551678-49551697 None:intergenic 30.0%
TGAGTGATTTCATCACATTA+TGG - chr8_4:49551967-49551986 Msa1330410:intron 30.0%
GATTTCATCACATTATGGTT+TGG - chr8_4:49551972-49551991 Msa1330410:intron 30.0%
TGACCCTTTATATCATTACA+TGG - chr8_4:49552009-49552028 Msa1330410:intron 30.0%
GTAGCCATGTAATGATATAA+AGG + chr8_4:49552016-49552035 None:intergenic 30.0%
TATATCATTACATGGCTACT+TGG - chr8_4:49552017-49552036 Msa1330410:intron 30.0%
CTATATTGGATTCATCAAAC+AGG - chr8_4:49552062-49552081 Msa1330410:intron 30.0%
AACATACATTGAGAATAGAG+GGG - chr8_4:49552119-49552138 Msa1330410:intron 30.0%
AAGATAAAATAATGACGGCT+AGG - chr8_4:49552466-49552485 Msa1330410:intron 30.0%
AGATAAAATAATGACGGCTA+GGG - chr8_4:49552467-49552486 Msa1330410:intron 30.0%
CAAAATGTTAAATGTTCTGC+AGG - chr8_4:49552654-49552673 Msa1330410:intron 30.0%
AACTCTGTAGAAAATGCTAA+GGG + chr8_4:49552778-49552797 None:intergenic 30.0%
ATTTGATCTTTCCACATCAT+TGG + chr8_4:49552824-49552843 None:intergenic 30.0%
TGTGGAAAGATCAAATGAAA+CGG - chr8_4:49552828-49552847 Msa1330410:intron 30.0%
CACGGTAAAATATGAAAGTA+GGG + chr8_4:49552865-49552884 None:intergenic 30.0%
TCACGGTAAAATATGAAAGT+AGG + chr8_4:49552866-49552885 None:intergenic 30.0%
!!! TTGTTTTAGGAAACCCTTTA+AGG - chr8_4:49552977-49552996 Msa1330410:intron 30.0%
!!! CTAAGACAAAAGTTTTGTTG+AGG + chr8_4:49553004-49553023 None:intergenic 30.0%
! CTCAACAAAACTTTTGTCTT+AGG - chr8_4:49553002-49553021 Msa1330410:intron 30.0%
! AAACTTTTGTCTTAGGGAAA+AGG - chr8_4:49553009-49553028 Msa1330410:intron 30.0%
!! TTTGTTATTATTTCGCCAGA+GGG + chr8_4:49553168-49553187 None:intergenic 30.0%
AAGTGCTTGTGTAGATAATA+TGG - chr8_4:49553186-49553205 Msa1330410:CDS 30.0%
GAAATGGTTAATTACTTCTG+TGG - chr8_4:49553683-49553702 Msa1330410:five_prime_UTR 30.0%
AACTGTGATTTACTATTGCT+AGG - chr8_4:49553771-49553790 Msa1330410:five_prime_UTR 30.0%
AGCAAAAAATCCTGAACATA+TGG + chr8_4:49553874-49553893 None:intergenic 30.0%
!!! ATATGTTCAGGATTTTTTGC+TGG - chr8_4:49553873-49553892 Msa1330410:five_prime_UTR 30.0%
! CAACAGCAGGAATTTGATTT+CGG - chr8_4:49545215-49545234 Msa1330410:CDS 35.0%
TCTTCTGCTGAATTTGATGA+TGG - chr8_4:49545374-49545393 Msa1330410:intron 35.0%
TAATGATCCTTACGGAAAGA+AGG - chr8_4:49545406-49545425 Msa1330410:intron 35.0%
TATGTTACCTTCTTTCCGTA+AGG + chr8_4:49545416-49545435 None:intergenic 35.0%
!!! GTAATGTTGGCTCATGTTTT+AGG - chr8_4:49545502-49545521 Msa1330410:intron 35.0%
GGACCAAATCAATGGTTTAT+TGG + chr8_4:49545792-49545811 None:intergenic 35.0%
GGAAGTGAATGTGATAGTTT+AGG + chr8_4:49545813-49545832 None:intergenic 35.0%
AGTCCTTCTGTAAGATGTTA+AGG - chr8_4:49545897-49545916 Msa1330410:intron 35.0%
AGTCCTTAACATCTTACAGA+AGG + chr8_4:49545903-49545922 None:intergenic 35.0%
TTAGGGACTGAATTAGAGAA+AGG - chr8_4:49545945-49545964 Msa1330410:CDS 35.0%
TAGGGACTGAATTAGAGAAA+GGG - chr8_4:49545946-49545965 Msa1330410:CDS 35.0%
! TAGAGAAAGGGTGGTATTTT+AGG - chr8_4:49545958-49545977 Msa1330410:CDS 35.0%
! AGAGAAAGGGTGGTATTTTA+GGG - chr8_4:49545959-49545978 Msa1330410:CDS 35.0%
! CAAAACATGTTTGTTGCCTA+AGG - chr8_4:49546094-49546113 Msa1330410:intron 35.0%
CTCGAAATGTCAATACAAAC+AGG - chr8_4:49546138-49546157 Msa1330410:intron 35.0%
TCAATACAAACAGGCCATTT+AGG - chr8_4:49546147-49546166 Msa1330410:intron 35.0%
CAATACAAACAGGCCATTTA+GGG - chr8_4:49546148-49546167 Msa1330410:intron 35.0%
TGTGAACTCTATGAATCATG+TGG - chr8_4:49546208-49546227 Msa1330410:intron 35.0%
GTGAACTCTATGAATCATGT+GGG - chr8_4:49546209-49546228 Msa1330410:intron 35.0%
AGCAAAAAACAGAGGAAACA+GGG + chr8_4:49546348-49546367 None:intergenic 35.0%
GAGAAAATAGAGGAAAACAG+AGG + chr8_4:49546407-49546426 None:intergenic 35.0%
GAGTTCACGTAACTAATTGT+TGG - chr8_4:49546612-49546631 Msa1330410:intron 35.0%
AGGTGTAAACATATCCTCTA+CGG - chr8_4:49546672-49546691 Msa1330410:intron 35.0%
! AGATAATTTTCCAACCGTAG+AGG + chr8_4:49546689-49546708 None:intergenic 35.0%
CACAATACGAGATTCAGAAT+TGG - chr8_4:49546878-49546897 Msa1330410:intron 35.0%
AATTCACGTACAAACTAACC+TGG + chr8_4:49546949-49546968 None:intergenic 35.0%
! ATGCTTTCTAGTACCCAAAT+TGG - chr8_4:49547073-49547092 Msa1330410:intron 35.0%
GCTTGAAAAGGCAAAGAAAA+AGG - chr8_4:49547250-49547269 Msa1330410:CDS 35.0%
AGAAGAAATTGGAGTGTAGT+TGG - chr8_4:49547443-49547462 Msa1330410:intron 35.0%
! TGCTAAAGCAACGCTTATTT+TGG + chr8_4:49547604-49547623 None:intergenic 35.0%
TGTTATACTAACTAGCACCT+CGG - chr8_4:49547856-49547875 Msa1330410:intron 35.0%
! TACTTTCCAGCCATGTTTTA+CGG - chr8_4:49547929-49547948 Msa1330410:intron 35.0%
TGAGCTTAAATCATAAGCAG+TGG - chr8_4:49548002-49548021 Msa1330410:intron 35.0%
AGAGAGAGAGAGAGAAAAAA+AGG + chr8_4:49548610-49548629 None:intergenic 35.0%
GTTTCAAAATTCCTGACTCT+TGG + chr8_4:49548696-49548715 None:intergenic 35.0%
GACTCAACAATCATATGGAA+AGG + chr8_4:49548746-49548765 None:intergenic 35.0%
AACAATTTCAGTCTGCTGTA+CGG - chr8_4:49548946-49548965 Msa1330410:intron 35.0%
! AACAATACCTGCATTGATGT+TGG + chr8_4:49548993-49549012 None:intergenic 35.0%
CTAAGTGGATCAACAAAGTT+TGG + chr8_4:49549116-49549135 None:intergenic 35.0%
! ATTGATAACAACCACATCTC+TGG + chr8_4:49549350-49549369 None:intergenic 35.0%
AGCACCTATTGTAGAAAAGA+TGG - chr8_4:49549390-49549409 Msa1330410:intron 35.0%
! CCTACCATCTTTTCTACAAT+AGG + chr8_4:49549397-49549416 None:intergenic 35.0%
CCTATTGTAGAAAAGATGGT+AGG - chr8_4:49549394-49549413 Msa1330410:intron 35.0%
TAGAAAAGATGGTAGGAACT+CGG - chr8_4:49549401-49549420 Msa1330410:intron 35.0%
!! TTCCCTCATTTGAGTTTTGT+TGG - chr8_4:49549555-49549574 Msa1330410:intron 35.0%
TATGTGTTCATCAAGACTTG+TGG - chr8_4:49549587-49549606 Msa1330410:intron 35.0%
! ACCAAGCTTTTATTCCCTTA+TGG - chr8_4:49549779-49549798 Msa1330410:CDS 35.0%
! CCAAGCTTTTATTCCCTTAT+GGG - chr8_4:49549780-49549799 Msa1330410:CDS 35.0%
! GTAAACTCTTCATGGATTAC+TGG + chr8_4:49549872-49549891 None:intergenic 35.0%
TTAACCGTGTAAACTCTTCA+TGG + chr8_4:49549880-49549899 None:intergenic 35.0%
TGAAGAGTTTACACGGTTAA+AGG - chr8_4:49549880-49549899 Msa1330410:intron 35.0%
!!! TGATTTTTTGGCATGAAGTC+GGG - chr8_4:49549948-49549967 Msa1330410:intron 35.0%
TGTTTCTTCACTGTATCTCT+GGG + chr8_4:49550039-49550058 None:intergenic 35.0%
ATGTTTCTTCACTGTATCTC+TGG + chr8_4:49550040-49550059 None:intergenic 35.0%
! GTCTATGGTCCCTTTAATTT+GGG - chr8_4:49550098-49550117 Msa1330410:intron 35.0%
!! TCTATGGTCCCTTTAATTTG+GGG - chr8_4:49550099-49550118 Msa1330410:intron 35.0%
CCAAACATAGCCCTTATTAA+TGG + chr8_4:49550141-49550160 None:intergenic 35.0%
CCATTAATAAGGGCTATGTT+TGG - chr8_4:49550138-49550157 Msa1330410:intron 35.0%
AAGCTCCTATGCAAATTACT+AGG + chr8_4:49550181-49550200 None:intergenic 35.0%
AGAAACGTTGATCAATTAGG+AGG + chr8_4:49550510-49550529 None:intergenic 35.0%
ACATGTGTATCTCGTGTATA+CGG - chr8_4:49550534-49550553 Msa1330410:intron 35.0%
AGAAACGTTGATCAATTAGG+AGG + chr8_4:49550510-49550529 None:intergenic 35.0%
TATCTCATGTATACGGTGTA+TGG - chr8_4:49550676-49550695 Msa1330410:intron 35.0%
GGCTCATATGAGTGTTATAT+AGG - chr8_4:49550750-49550769 Msa1330410:intron 35.0%
GAGTACATTAGAGAAGGAAA+TGG - chr8_4:49550939-49550958 Msa1330410:intron 35.0%
TTGCGAAAAAAAGAGAAAGG+TGG - chr8_4:49550974-49550993 Msa1330410:intron 35.0%
! ATGATAACTTCTAGGTGTTG+GGG - chr8_4:49551059-49551078 Msa1330410:intron 35.0%
! GGTGGTGTTAAATGTATAAC+AGG - chr8_4:49551080-49551099 Msa1330410:intron 35.0%
AATTTCAGTGATGAATCGGA+AGG - chr8_4:49551131-49551150 Msa1330410:intron 35.0%
AATCGAGACACAGTAAATGT+GGG + chr8_4:49551221-49551240 None:intergenic 35.0%
AAATCGAGACACAGTAAATG+TGG + chr8_4:49551222-49551241 None:intergenic 35.0%
! GTCTCGATTTCTTTTTCTTG+TGG - chr8_4:49551232-49551251 Msa1330410:intron 35.0%
ATTTACTTCCCAAAGCAAGA+TGG - chr8_4:49551479-49551498 Msa1330410:CDS 35.0%
TTTACTTCCCAAAGCAAGAT+GGG - chr8_4:49551480-49551499 Msa1330410:CDS 35.0%
CAAGAGGAAAATGAAGAGAT+TGG - chr8_4:49551534-49551553 Msa1330410:intron 35.0%
AGATATATAGAATGTGGGGA+GGG + chr8_4:49551672-49551691 None:intergenic 35.0%
CAGCAGATATATAGAATGTG+GGG + chr8_4:49551676-49551695 None:intergenic 35.0%
GAGCTCAGAAATCAATTTGA+AGG - chr8_4:49551936-49551955 Msa1330410:intron 35.0%
TGTTTAAAAAAAGGGCAACC+CGG + chr8_4:49552305-49552324 None:intergenic 35.0%
GGGAAATAATTCCCTATTTG+AGG + chr8_4:49552394-49552413 None:intergenic 35.0%
AGCAATACACTCTAAACTCT+GGG + chr8_4:49552414-49552433 None:intergenic 35.0%
TAGCAATACACTCTAAACTC+TGG + chr8_4:49552415-49552434 None:intergenic 35.0%
! AGTATTGGGCTTAAGCTATT+GGG + chr8_4:49552586-49552605 None:intergenic 35.0%
!! AAGTATTGGGCTTAAGCTAT+TGG + chr8_4:49552587-49552606 None:intergenic 35.0%
TAGTATTATTGTGTGGGACT+TGG - chr8_4:49552624-49552643 Msa1330410:intron 35.0%
AGTATTATTGTGTGGGACTT+GGG - chr8_4:49552625-49552644 Msa1330410:intron 35.0%
CAACTCTGTAGAAAATGCTA+AGG + chr8_4:49552779-49552798 None:intergenic 35.0%
TACAGAGTTGCAGAAACATA+TGG - chr8_4:49552789-49552808 Msa1330410:intron 35.0%
!! GTTTTGTTGAGGTCCTTAAA+GGG + chr8_4:49552993-49553012 None:intergenic 35.0%
!!! AGTTTTGTTGAGGTCCTTAA+AGG + chr8_4:49552994-49553013 None:intergenic 35.0%
CTTAGGGAAAAGGCTTATAT+TGG - chr8_4:49553019-49553038 Msa1330410:intron 35.0%
TGCAGATACAGAGTGATATA+AGG - chr8_4:49553077-49553096 Msa1330410:intron 35.0%
! TTGTTATTATTTCGCCAGAG+GGG + chr8_4:49553167-49553186 None:intergenic 35.0%
!! CTTTGTTATTATTTCGCCAG+AGG + chr8_4:49553169-49553188 None:intergenic 35.0%
!!! TTCGCATTTTTTATGGCGTT+AGG - chr8_4:49553272-49553291 Msa1330410:intron 35.0%
ACGAAGCCCTTGAAAAATAA+CGG + chr8_4:49553341-49553360 None:intergenic 35.0%
TGTATGTGTGTCTTAGTCAT+TGG - chr8_4:49553460-49553479 Msa1330410:intron 35.0%
GTATGTGTGTCTTAGTCATT+GGG - chr8_4:49553461-49553480 Msa1330410:intron 35.0%
AAAAAAAGCTCCAGAGAGAA+CGG - chr8_4:49553565-49553584 Msa1330410:intron 35.0%
TGTGATTTACTATTGCTAGG+TGG - chr8_4:49553774-49553793 Msa1330410:five_prime_UTR 35.0%
TGAACATATGGAGTTGAACA+TGG + chr8_4:49553862-49553881 None:intergenic 35.0%
ATGTTCAACTCCATATGTTC+AGG - chr8_4:49553861-49553880 Msa1330410:five_prime_UTR 35.0%
TTGGGAGAGATGAAAATGAG+GGG + chr8_4:49544906-49544925 None:intergenic 40.0%
CTTGGGAGAGATGAAAATGA+GGG + chr8_4:49544907-49544926 None:intergenic 40.0%
ATGAAAATTGGACTTCGGCT+TGG + chr8_4:49544937-49544956 None:intergenic 40.0%
TCTGACGCGAAGTTGAAAAA+CGG + chr8_4:49545021-49545040 None:intergenic 40.0%
AGCTGGAAAAACCCTAGAAT+CGG + chr8_4:49545093-49545112 None:intergenic 40.0%
GAGTGAAGTGTGAATGAGAA+AGG + chr8_4:49545166-49545185 None:intergenic 40.0%
CTTTCATTCTTCTCAACAGC+AGG - chr8_4:49545202-49545221 Msa1330410:CDS 40.0%
GATTTCGGAGAACGATTTAC+CGG - chr8_4:49545230-49545249 Msa1330410:CDS 40.0%
AGTAAAACCTGAACGTGTTC+CGG + chr8_4:49545252-49545271 None:intergenic 40.0%
!! TTCTACTTCAGCTGTCGTTT+TGG + chr8_4:49545528-49545547 None:intergenic 40.0%
GCGAAGAGACAAAATCATTC+CGG + chr8_4:49545570-49545589 None:intergenic 40.0%
TTGCAGTCTTCAAGACTGTA+AGG - chr8_4:49545692-49545711 Msa1330410:intron 40.0%
CAGCAAAAAACAGAGGAAAC+AGG + chr8_4:49546349-49546368 None:intergenic 40.0%
GGGAAAACAGCAAAAAACAG+AGG + chr8_4:49546356-49546375 None:intergenic 40.0%
ACACGGTTCGTAAATAGGAT+CGG + chr8_4:49546503-49546522 None:intergenic 40.0%
ACGTAACACGGTTCGTAAAT+AGG + chr8_4:49546508-49546527 None:intergenic 40.0%
AAAACACGAGGAACGTAACA+CGG + chr8_4:49546520-49546539 None:intergenic 40.0%
GTAAACATATCCTCTACGGT+TGG - chr8_4:49546676-49546695 Msa1330410:intron 40.0%
CTGATGATTTCAGTGCTTGA+AGG + chr8_4:49547109-49547128 None:intergenic 40.0%
ATCATCAGTAGAGTCCTTAG+CGG - chr8_4:49547121-49547140 Msa1330410:intron 40.0%
! ATAGTAAATCCTTTTCCCCC+AGG - chr8_4:49547396-49547415 Msa1330410:intron 40.0%
CTCAAGTAGACAACGTGTTT+GGG + chr8_4:49547544-49547563 None:intergenic 40.0%
ACTCAAGTAGACAACGTGTT+TGG + chr8_4:49547545-49547564 None:intergenic 40.0%
!!! AACGCTTATTTTGGACTGGA+GGG + chr8_4:49547595-49547614 None:intergenic 40.0%
!!! AAGCAACGCTTATTTTGGAC+TGG + chr8_4:49547599-49547618 None:intergenic 40.0%
TAGAACAACTCCTAGAGTAC+TGG + chr8_4:49548257-49548276 None:intergenic 40.0%
ATGCTGAGACCAGAATGAAT+TGG + chr8_4:49548718-49548737 None:intergenic 40.0%
ACAATTTCAGTCTGCTGTAC+GGG - chr8_4:49548947-49548966 Msa1330410:intron 40.0%
AAATAAGCGTACCAGAGATG+TGG - chr8_4:49549336-49549355 Msa1330410:intron 40.0%
TTCACTCAACGATTGCCTTT+GGG + chr8_4:49549458-49549477 None:intergenic 40.0%
AAAAGTGGGATAGCGTTAGT+GGG + chr8_4:49549731-49549750 None:intergenic 40.0%
!! ACTAACGCTATCCCACTTTT+GGG - chr8_4:49549731-49549750 Msa1330410:intron 40.0%
! AAAGCTTGGTAGTCAAATCC+CGG + chr8_4:49549769-49549788 None:intergenic 40.0%
CCCATAAGGGAATAAAAGCT+TGG + chr8_4:49549783-49549802 None:intergenic 40.0%
ATAATTTCGGGAGCCCATAA+GGG + chr8_4:49549796-49549815 None:intergenic 40.0%
AATAATTTCGGGAGCCCATA+AGG + chr8_4:49549797-49549816 None:intergenic 40.0%
CGTCTATGGTCCCTTTAATT+TGG - chr8_4:49550097-49550116 Msa1330410:intron 40.0%
ATTAGGGGCTCCCATTAATA+AGG - chr8_4:49550127-49550146 Msa1330410:intron 40.0%
TTAGGGGCTCCCATTAATAA+GGG - chr8_4:49550128-49550147 Msa1330410:intron 40.0%
! ACGCACCTAGTAATTTGCAT+AGG - chr8_4:49550173-49550192 Msa1330410:intron 40.0%
TATCTCGTGTATACGGTGTA+TGG - chr8_4:49550541-49550560 Msa1330410:intron 40.0%
TTTGTATGAGTTGTCCGACA+CGG - chr8_4:49550729-49550748 Msa1330410:intron 40.0%
!!! TCTGAGTTGTGTTTGGCTTT+TGG - chr8_4:49551168-49551187 Msa1330410:intron 40.0%
!! GCTATGAAGGCGTCAATATT+AGG + chr8_4:49551199-49551218 None:intergenic 40.0%
! ACAGTAAATGTGGGCTATGA+AGG + chr8_4:49551212-49551231 None:intergenic 40.0%
GGAAAAGGACACAAGACTAA+AGG - chr8_4:49551428-49551447 Msa1330410:intron 40.0%
TTACTTCCCAAAGCAAGATG+GGG - chr8_4:49551481-49551500 Msa1330410:CDS 40.0%
GATATATAGAATGTGGGGAG+GGG + chr8_4:49551671-49551690 None:intergenic 40.0%
CAGATATATAGAATGTGGGG+AGG + chr8_4:49551673-49551692 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr8_4:49552164-49552183 Msa1330410:intron 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - chr8_4:49552207-49552226 Msa1330410:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - chr8_4:49552208-49552227 Msa1330410:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr8_4:49552215-49552234 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr8_4:49552213-49552232 Msa1330410:intron 40.0%
GATGCGTACAATACACCAAA+TGG - chr8_4:49552235-49552254 Msa1330410:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr8_4:49552239-49552258 Msa1330410:intron 40.0%
ATGTGTGGGTACCTCAAATA+GGG - chr8_4:49552380-49552399 Msa1330410:intron 40.0%
GAGTTGCAGAAACATATGGA+TGG - chr8_4:49552793-49552812 Msa1330410:intron 40.0%
CAGAGTGATATAAGGTGACT+TGG - chr8_4:49553085-49553104 Msa1330410:intron 40.0%
! AGTGATATAAGGTGACTTGG+TGG - chr8_4:49553088-49553107 Msa1330410:intron 40.0%
!! TATAAGGTGACTTGGTGGTT+TGG - chr8_4:49553093-49553112 Msa1330410:intron 40.0%
!! ATAAGGTGACTTGGTGGTTT+GGG - chr8_4:49553094-49553113 Msa1330410:intron 40.0%
ATAGACTGTGTCTGTAACCA+TGG - chr8_4:49553413-49553432 Msa1330410:intron 40.0%
CTAAGACACACATACAACCT+TGG + chr8_4:49553456-49553475 None:intergenic 40.0%
! TAGTCATTGGGTTTTCTTGC+AGG - chr8_4:49553473-49553492 Msa1330410:intron 40.0%
GCAAGGTAAATTAGACGAGA+AGG - chr8_4:49553506-49553525 Msa1330410:CDS 40.0%
AAAAAAGCTCCAGAGAGAAC+GGG - chr8_4:49553566-49553585 Msa1330410:intron 40.0%
TGGTACTCATGATTCAGTCA+CGG + chr8_4:49553842-49553861 None:intergenic 40.0%
TGGGAGAGATGAAAATGAGG+GGG + chr8_4:49544905-49544924 None:intergenic 45.0%
GCTTGGGAGAGATGAAAATG+AGG + chr8_4:49544908-49544927 None:intergenic 45.0%
AAGTAGCTGTTGCTGGTACT+TGG + chr8_4:49545056-49545075 None:intergenic 45.0%
TCAGCTTCTCTCCGATTCTA+GGG - chr8_4:49545079-49545098 Msa1330410:three_prime_UTR 45.0%
AATTACGTCGTCGAGAGTTG+GGG + chr8_4:49545128-49545147 None:intergenic 45.0%
GAATTACGTCGTCGAGAGTT+GGG + chr8_4:49545129-49545148 None:intergenic 45.0%
AGAATTACGTCGTCGAGAGT+TGG + chr8_4:49545130-49545149 None:intergenic 45.0%
! TGATTTTGTCTCTTCGCGAG+AGG - chr8_4:49545573-49545592 Msa1330410:intron 45.0%
GGACTGAATTAGAGAAAGGG+TGG - chr8_4:49545949-49545968 Msa1330410:CDS 45.0%
TGCTCCTAGACATTGTAGTC+AGG - chr8_4:49546238-49546257 Msa1330410:intron 45.0%
CGATCCTGACTACAATGTCT+AGG + chr8_4:49546245-49546264 None:intergenic 45.0%
GTAAAGTCTAAGCACGGTCA+AGG + chr8_4:49546310-49546329 None:intergenic 45.0%
ACCGTGCTTAGACTTTACTC+CGG - chr8_4:49546312-49546331 Msa1330410:intron 45.0%
ACCGGAGTAAAGTCTAAGCA+CGG + chr8_4:49546316-49546335 None:intergenic 45.0%
GGTTCGTAAATAGGATCGGT+AGG + chr8_4:49546499-49546518 None:intergenic 45.0%
GTGAACGAACGTAAAACACG+AGG + chr8_4:49546532-49546551 None:intergenic 45.0%
! CGTGTTTTACGTTCGTTCAC+CGG - chr8_4:49546532-49546551 Msa1330410:intron 45.0%
ATCGAGATCCTACGTAGGAT+CGG + chr8_4:49546562-49546581 None:intergenic 45.0%
CTCTCTCTCTCAATGTAGTC+AGG + chr8_4:49546585-49546604 None:intergenic 45.0%
AATGCACCATTCATACCTGC+TGG - chr8_4:49546916-49546935 Msa1330410:intron 45.0%
ATGCACCATTCATACCTGCT+GGG - chr8_4:49546917-49546936 Msa1330410:intron 45.0%
ACGTACAAACTAACCTGGTG+TGG + chr8_4:49546944-49546963 None:intergenic 45.0%
GCAAGAGATAGCAAAGCTGA+AGG - chr8_4:49547307-49547326 Msa1330410:CDS 45.0%
ATATTCTCTCCTGGGGGAAA+AGG + chr8_4:49547408-49547427 None:intergenic 45.0%
!!! CAACGCTTATTTTGGACTGG+AGG + chr8_4:49547596-49547615 None:intergenic 45.0%
TAAGCTCCGTAAAACATGGC+TGG + chr8_4:49547938-49547957 None:intergenic 45.0%
!! TTGGCTTGAGTTGAGCTTTG+AGG + chr8_4:49548974-49548993 None:intergenic 45.0%
ACTCAAGCCAACATCAATGC+AGG - chr8_4:49548983-49549002 Msa1330410:intron 45.0%
GGATGATTTCATGCTAGGAC+CGG - chr8_4:49549232-49549251 Msa1330410:intron 45.0%
ATGTAGAGAGAAGACCCCAA+AGG - chr8_4:49549440-49549459 Msa1330410:intron 45.0%
TCACTCAACGATTGCCTTTG+GGG + chr8_4:49549457-49549476 None:intergenic 45.0%
GTTCACTCAACGATTGCCTT+TGG + chr8_4:49549459-49549478 None:intergenic 45.0%
CAAAAGTGGGATAGCGTTAG+TGG + chr8_4:49549732-49549751 None:intergenic 45.0%
! CACTAACGCTATCCCACTTT+TGG - chr8_4:49549730-49549749 Msa1330410:intron 45.0%
!! CTAACGCTATCCCACTTTTG+GGG - chr8_4:49549732-49549751 Msa1330410:intron 45.0%
CATAGACGACCCTCATCAAA+TGG + chr8_4:49550085-49550104 None:intergenic 45.0%
CATTTGATGAGGGTCGTCTA+TGG - chr8_4:49550083-49550102 Msa1330410:intron 45.0%
AACACTCATATGAGCCGTGT+CGG + chr8_4:49550746-49550765 None:intergenic 45.0%
!! GTTATATAGGTGTCGGACAC+CGG - chr8_4:49550763-49550782 Msa1330410:intron 45.0%
TTACTTCGACACTCCTAGAC+CGG + chr8_4:49550785-49550804 None:intergenic 45.0%
! TACGAGTGTCATAGGAGTGT+CGG - chr8_4:49550857-49550876 Msa1330410:intron 45.0%
!! ATAACTTCTAGGTGTTGGGG+TGG - chr8_4:49551062-49551081 Msa1330410:intron 45.0%
CAACTTCCCCATCTTGCTTT+GGG + chr8_4:49551490-49551509 None:intergenic 45.0%
CAAGATGGGGAAGTTGCTAA+TGG - chr8_4:49551494-49551513 Msa1330410:intron 45.0%
ATTGGGCTTCAAGCTTCTGA+GGG - chr8_4:49551552-49551571 Msa1330410:intron 45.0%
TGAGAATAGAGGGGTAACCT+TGG - chr8_4:49552128-49552147 Msa1330410:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr8_4:49552170-49552189 Msa1330410:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr8_4:49552171-49552190 Msa1330410:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr8_4:49552204-49552223 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - chr8_4:49552238-49552257 Msa1330410:intron 45.0%
CATGTGTGGGTACCTCAAAT+AGG - chr8_4:49552379-49552398 Msa1330410:intron 45.0%
!! GGATGGATTGACCAATGATG+TGG - chr8_4:49552810-49552829 Msa1330410:intron 45.0%
!! TAAGGTGACTTGGTGGTTTG+GGG - chr8_4:49553095-49553114 Msa1330410:intron 45.0%
! TTGCAGGTTTTCATGCTGCA+AGG - chr8_4:49553489-49553508 Msa1330410:intron 45.0%
AAATGCAGCACGTAATGCCA+GGG - chr8_4:49553594-49553613 Msa1330410:intron 45.0%
AGTATCATCTCGTCAATCCC+TGG + chr8_4:49553614-49553633 None:intergenic 45.0%
TACTCATGATTCAGTCACGG+TGG + chr8_4:49553839-49553858 None:intergenic 45.0%
!!! TATTTTATTTACATAATTTA+GGG + chr8_4:49545843-49545862 None:intergenic 5.0%
!!! TTATTTTATTTACATAATTT+AGG + chr8_4:49545844-49545863 None:intergenic 5.0%
!! TATATTAATTTATTTATAGA+AGG - chr8_4:49550326-49550345 Msa1330410:intron 5.0%
AGTAGGGTGGTCGAGAAGTA+TGG - chr8_4:49544860-49544879 Msa1330410:three_prime_UTR 50.0%
!! TTGGACTTCGGCTTGGTCTT+GGG + chr8_4:49544930-49544949 None:intergenic 50.0%
!! ATTGGACTTCGGCTTGGTCT+TGG + chr8_4:49544931-49544950 None:intergenic 50.0%
GTTGCTGGTACTTGGAGTAG+AGG + chr8_4:49545048-49545067 None:intergenic 50.0%
CTGAGTGAAGTAGCTGTTGC+TGG + chr8_4:49545063-49545082 None:intergenic 50.0%
CTCAGCTTCTCTCCGATTCT+AGG - chr8_4:49545078-49545097 Msa1330410:three_prime_UTR 50.0%
CGATTTACCGGAACACGTTC+AGG - chr8_4:49545242-49545261 Msa1330410:CDS 50.0%
GCTGAAGTAGAAGCTGCTTC+TGG - chr8_4:49545536-49545555 Msa1330410:intron 50.0%
!! GCTGCTTCTGGTGTTACAAC+CGG - chr8_4:49545548-49545567 Msa1330410:intron 50.0%
! GGAAACGCTTGATTCGTGCT+TGG - chr8_4:49545713-49545732 Msa1330410:intron 50.0%
! AAGCACGGTCAAGGTGCTTT+AGG + chr8_4:49546301-49546320 None:intergenic 50.0%
GAAACAGGGCAAAGACGAAC+CGG + chr8_4:49546334-49546353 None:intergenic 50.0%
TCAGGATCGAGATCCTACGT+AGG + chr8_4:49546567-49546586 None:intergenic 50.0%
! AGTAGAGTCCTTAGCGGATC+AGG - chr8_4:49547127-49547146 Msa1330410:intron 50.0%
ATTGAATGCACACTACGCCG+AGG + chr8_4:49547876-49547895 None:intergenic 50.0%
TGGGATGACCAGCGAAATGA+CGG + chr8_4:49548560-49548579 None:intergenic 50.0%
CTGTATGGAGTCCAAGAGTC+AGG - chr8_4:49548682-49548701 Msa1330410:intron 50.0%
AGATGGTAGGAACTCGGCTT+AGG - chr8_4:49549407-49549426 Msa1330410:intron 50.0%
GAACTCGGCTTAGGTGGTTT+GGG - chr8_4:49549416-49549435 Msa1330410:intron 50.0%
TAAGCCGCACCATTACTGCT+GGG - chr8_4:49549504-49549523 Msa1330410:intron 50.0%
ACGTGTCGTACGAGTGTCAT+AGG - chr8_4:49550849-49550868 Msa1330410:intron 50.0%
TGCGACACTCTTAGTCCTAG+AGG - chr8_4:49550884-49550903 Msa1330410:intron 50.0%
TATGAAGCACGGACACCTCT+AGG + chr8_4:49550902-49550921 None:intergenic 50.0%
! CGGAGGGAGTACATTAGAGA+AGG - chr8_4:49550933-49550952 Msa1330410:intron 50.0%
GCAACTTCCCCATCTTGCTT+TGG + chr8_4:49551491-49551510 None:intergenic 50.0%
GATTGGGCTTCAAGCTTCTG+AGG - chr8_4:49551551-49551570 Msa1330410:intron 50.0%
! GCTTCAAGCTTCTGAGGGAA+AGG - chr8_4:49551557-49551576 Msa1330410:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr8_4:49552148-49552167 None:intergenic 50.0%
!! AAGGTGACTTGGTGGTTTGG+GGG - chr8_4:49553096-49553115 Msa1330410:intron 50.0%
ATGGGTTCAACTTACCCCTC+TGG - chr8_4:49553150-49553169 Msa1330410:intron 50.0%
ACAAAGCTTAGGGGCAGCAT+TGG + chr8_4:49553243-49553262 None:intergenic 50.0%
ATTTGCTCTCCCGTTCTCTC+TGG + chr8_4:49553578-49553597 None:intergenic 50.0%
CAAATGCAGCACGTAATGCC+AGG - chr8_4:49553593-49553612 Msa1330410:intron 50.0%
ATTCAGTCACGGTGGCGTAT+GGG + chr8_4:49553831-49553850 None:intergenic 50.0%
! AGGGTGGTCGAGAAGTATGG+TGG - chr8_4:49544863-49544882 Msa1330410:three_prime_UTR 55.0%
! GGGTGGTCGAGAAGTATGGT+GGG - chr8_4:49544864-49544883 Msa1330410:three_prime_UTR 55.0%
!! TTCGGCTTGGTCTTGGGCTT+GGG + chr8_4:49544924-49544943 None:intergenic 55.0%
TGGGGAAGACATGGTGAAGC+TGG + chr8_4:49545110-49545129 None:intergenic 55.0%
GTCGAGAGTTGGGGAAGACA+TGG + chr8_4:49545119-49545138 None:intergenic 55.0%
!! AGGATCGAGTGCTGACTCGT+AGG - chr8_4:49546258-49546277 Msa1330410:intron 55.0%
GTGGTCCCAGCAGGTATGAA+TGG + chr8_4:49546925-49546944 None:intergenic 55.0%
TGGCTGAACCTGATCCGCTA+AGG + chr8_4:49547138-49547157 None:intergenic 55.0%
TAACGTGCCCGTCATTTCGC+TGG - chr8_4:49548549-49548568 Msa1330410:intron 55.0%
GGGATGACCAGCGAAATGAC+GGG + chr8_4:49548559-49548578 None:intergenic 55.0%
TAGGACCGGTGATGTTGCGT+GGG - chr8_4:49549246-49549265 Msa1330410:intron 55.0%
TGGTAGGAACTCGGCTTAGG+TGG - chr8_4:49549410-49549429 Msa1330410:intron 55.0%
GGAACTCGGCTTAGGTGGTT+TGG - chr8_4:49549415-49549434 Msa1330410:intron 55.0%
CAGCAGTAATGGTGCGGCTT+AGG + chr8_4:49549505-49549524 None:intergenic 55.0%
CTAAGCCGCACCATTACTGC+TGG - chr8_4:49549503-49549522 Msa1330410:intron 55.0%
AAGCCGCACCATTACTGCTG+GGG - chr8_4:49549505-49549524 Msa1330410:intron 55.0%
GGTAGTCAAATCCCGGACAG+CGG + chr8_4:49549762-49549781 None:intergenic 55.0%
GACACTCGTACGACACGTGT+CGG + chr8_4:49550847-49550866 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr8_4:49552183-49552202 Msa1330410:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr8_4:49552278-49552297 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr8_4:49552279-49552298 None:intergenic 55.0%
GATTCAGTCACGGTGGCGTA+TGG + chr8_4:49553832-49553851 None:intergenic 55.0%
!! CTTCGGCTTGGTCTTGGGCT+TGG + chr8_4:49544925-49544944 None:intergenic 60.0%
CCTACGTAGGATCGGTCTGC+CGG + chr8_4:49546554-49546573 None:intergenic 60.0%
ATACCTGCTGGGACCACACC+AGG - chr8_4:49546928-49546947 Msa1330410:intron 60.0%
TAACCTGGTGTGGTCCCAGC+AGG + chr8_4:49546934-49546953 None:intergenic 60.0%
CTAGGACCGGTGATGTTGCG+TGG - chr8_4:49549245-49549264 Msa1330410:intron 60.0%
ACCGGTGATGTTGCGTGGGA+CGG - chr8_4:49549250-49549269 Msa1330410:intron 60.0%
CCACCCCAGCAGTAATGGTG+CGG + chr8_4:49549511-49549530 None:intergenic 60.0%
CGCACCATTACTGCTGGGGT+GGG - chr8_4:49549509-49549528 Msa1330410:intron 60.0%
GCACCATTACTGCTGGGGTG+GGG - chr8_4:49549510-49549529 Msa1330410:intron 60.0%
ATTACTGCTGGGGTGGGGCT+CGG - chr8_4:49549515-49549534 Msa1330410:intron 60.0%
!!! CGCTATCCCACTTTTGGGGC+CGG - chr8_4:49549736-49549755 Msa1330410:intron 60.0%
!! TAGGTGTCGGACACCGGTCT+AGG - chr8_4:49550769-49550788 Msa1330410:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr8_4:49552137-49552156 Msa1330410:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr8_4:49552251-49552270 Msa1330410:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr8_4:49552266-49552285 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr8_4:49552267-49552286 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr8_4:49552266-49552285 Msa1330410:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr8_4:49552267-49552286 Msa1330410:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr8_4:49552283-49552302 Msa1330410:intron 60.0%
!! GTGACTTGGTGGTTTGGGGG+AGG - chr8_4:49553099-49553118 Msa1330410:intron 60.0%
CCGGCAGACCGATCCTACGT+AGG - chr8_4:49546551-49546570 Msa1330410:intron 65.0%
CCCGTCCCACGCAACATCAC+CGG + chr8_4:49549254-49549273 None:intergenic 65.0%
CCGGTGATGTTGCGTGGGAC+GGG - chr8_4:49549251-49549270 Msa1330410:intron 65.0%
CGGTGATGTTGCGTGGGACG+GGG - chr8_4:49549252-49549271 Msa1330410:intron 65.0%
GATGTTGCGTGGGACGGGGA+CGG - chr8_4:49549256-49549275 Msa1330410:intron 65.0%
!! GGACGGGGACGGAGTGTTGT+GGG - chr8_4:49549267-49549286 Msa1330410:intron 65.0%
!! GACGGGGACGGAGTGTTGTG+GGG - chr8_4:49549268-49549287 Msa1330410:intron 65.0%
!! ACGGGGACGGAGTGTTGTGG+GGG - chr8_4:49549269-49549288 Msa1330410:intron 65.0%
CCGCACCATTACTGCTGGGG+TGG - chr8_4:49549508-49549527 Msa1330410:intron 65.0%
GAGCCCCACCCCAGCAGTAA+TGG + chr8_4:49549516-49549535 None:intergenic 65.0%
GTCAAATCCCGGACAGCGGC+CGG + chr8_4:49549758-49549777 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr8_4:49552253-49552272 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr8_4:49552268-49552287 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr8_4:49552272-49552291 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr8_4:49552273-49552292 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr8_4:49552284-49552303 Msa1330410:intron 65.0%
CAGTCACGGTGGCGTATGGG+TGG + chr8_4:49553828-49553847 None:intergenic 65.0%
!! GGGACGGGGACGGAGTGTTG+TGG - chr8_4:49549266-49549285 Msa1330410:intron 70.0%
!! CGGGGACGGAGTGTTGTGGG+GGG - chr8_4:49549270-49549289 Msa1330410:intron 70.0%
!! GGGGACGGAGTGTTGTGGGG+GGG - chr8_4:49549271-49549290 Msa1330410:intron 70.0%
!! GGGACGGAGTGTTGTGGGGG+GGG - chr8_4:49549272-49549291 Msa1330410:intron 70.0%
!! GGACGGAGTGTTGTGGGGGG+GGG - chr8_4:49549273-49549292 Msa1330410:intron 70.0%
!! GACGGAGTGTTGTGGGGGGG+GGG - chr8_4:49549274-49549293 Msa1330410:intron 70.0%
!! ACGGAGTGTTGTGGGGGGGG+GGG - chr8_4:49549275-49549294 Msa1330410:intron 70.0%
CAGCGGCCGGCCCCAAAAGT+GGG + chr8_4:49549745-49549764 None:intergenic 70.0%
ACAGCGGCCGGCCCCAAAAG+TGG + chr8_4:49549746-49549765 None:intergenic 70.0%
!!! TTTTGGGGCCGGCCGCTGTC+CGG - chr8_4:49549747-49549766 Msa1330410:intron 70.0%
!! CGGAGTGTTGTGGGGGGGGG+GGG - chr8_4:49549276-49549295 Msa1330410:intron 75.0%
!! GGAGTGTTGTGGGGGGGGGG+GGG - chr8_4:49549277-49549296 Msa1330410:intron 75.0%
! GAGTGTTGTGGGGGGGGGGG+GGG - chr8_4:49549278-49549297 Msa1330410:intron 75.0%
AGTGTTGTGGGGGGGGGGGG+GGG - chr8_4:49549279-49549298 Msa1330410:intron 75.0%
! TTTGGGGCCGGCCGCTGTCC+GGG - chr8_4:49549748-49549767 Msa1330410:intron 75.0%
! GTGTTGTGGGGGGGGGGGGG+GGG - chr8_4:49549280-49549299 Msa1330410:intron 80.0%
! TGTTGTGGGGGGGGGGGGGG+GGG - chr8_4:49549281-49549300 Msa1330410:intron 80.0%
! GTTGTGGGGGGGGGGGGGGG+GGG - chr8_4:49549282-49549301 Msa1330410:intron 85.0%
! TTGTGGGGGGGGGGGGGGGG+GGG - chr8_4:49549283-49549302 Msa1330410:intron 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549284-49549303 Msa1330410:intron 90.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549285-49549304 Msa1330410:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr8_4:49549286-49549305 Msa1330410:intron 95.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49544847 49553915 49544847 ID=Msa1330410;Name=Msa1330410
chr8_4 mRNA 49544847 49553915 49544847 ID=Msa1330410-mRNA-1;Parent=Msa1330410;Name=Msa1330410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=271|1|0.92|1|1|1|14|307|331
chr8_4 exon 49544847 49545267 49544847 ID=Msa1330410-mRNA-1:exon:14385;Parent=Msa1330410-mRNA-1
chr8_4 exon 49545913 49545980 49545913 ID=Msa1330410-mRNA-1:exon:14384;Parent=Msa1330410-mRNA-1
chr8_4 exon 49546805 49546874 49546805 ID=Msa1330410-mRNA-1:exon:14383;Parent=Msa1330410-mRNA-1
chr8_4 exon 49547184 49547345 49547184 ID=Msa1330410-mRNA-1:exon:14382;Parent=Msa1330410-mRNA-1
chr8_4 exon 49548861 49548914 49548861 ID=Msa1330410-mRNA-1:exon:14381;Parent=Msa1330410-mRNA-1
chr8_4 exon 49549758 49549805 49549758 ID=Msa1330410-mRNA-1:exon:14380;Parent=Msa1330410-mRNA-1
chr8_4 exon 49551434 49551511 49551434 ID=Msa1330410-mRNA-1:exon:14379;Parent=Msa1330410-mRNA-1
chr8_4 exon 49551614 49551678 49551614 ID=Msa1330410-mRNA-1:exon:14378;Parent=Msa1330410-mRNA-1
chr8_4 exon 49551813 49551900 49551813 ID=Msa1330410-mRNA-1:exon:14377;Parent=Msa1330410-mRNA-1
chr8_4 exon 49553028 49553064 49553028 ID=Msa1330410-mRNA-1:exon:14376;Parent=Msa1330410-mRNA-1
chr8_4 exon 49553168 49553238 49553168 ID=Msa1330410-mRNA-1:exon:14375;Parent=Msa1330410-mRNA-1
chr8_4 exon 49553335 49553408 49553335 ID=Msa1330410-mRNA-1:exon:14374;Parent=Msa1330410-mRNA-1
chr8_4 exon 49553499 49553541 49553499 ID=Msa1330410-mRNA-1:exon:14373;Parent=Msa1330410-mRNA-1
chr8_4 exon 49553621 49553915 49553621 ID=Msa1330410-mRNA-1:exon:14372;Parent=Msa1330410-mRNA-1
chr8_4 five_prime_UTR 49553645 49553915 49553645 ID=Msa1330410-mRNA-1:five_prime_utr;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49553621 49553644 49553621 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49553499 49553541 49553499 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49553335 49553408 49553335 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49553168 49553238 49553168 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49553028 49553064 49553028 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49551813 49551900 49551813 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49551614 49551678 49551614 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49551434 49551511 49551434 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49549758 49549805 49549758 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49548861 49548914 49548861 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49547184 49547345 49547184 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49546805 49546874 49546805 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49545913 49545980 49545913 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 CDS 49545154 49545267 49545154 ID=Msa1330410-mRNA-1:cds;Parent=Msa1330410-mRNA-1
chr8_4 three_prime_UTR 49544847 49545153 49544847 ID=Msa1330410-mRNA-1:three_prime_utr;Parent=Msa1330410-mRNA-1
Gene Sequence

>Msa1330410

ATGTCTTCCCCAACTCTCGACGACCAGGAATTTGATTTCGGAGAACGATTTACCGGAACACGTTCAGATACTGTAAGTCATAAGAGGTCTTCTGCTGAATTTGATGATGGAAATTTTGATAATGATCCTTACGGAAAGAAGGCCAAAACGACAGCTGAAGTAGAAGCTGCTTCTGGTGTTACAACCGGAATGATTTTGTCTCTTCGCGAGAGTCTTCAAGACTGTAAGGAAACGCTTGATTCGTGCTTGAATGAACTTGAGGATGCACAATACGAGATTCAGAATTGGCGCTCTGCATTTCAAAATGCACCATTCATACCTGCTGGGACCACACCAGTACCCAAATTGGTGATTAATTACCTTCAAGCACTGAAATCATCAGTAGAGTCCTTAGCGGATCAGCTTGAAAAGGCAAAGAAAAAGGAAGTTGCATTCATTGTGACATTTGCTAAACGTGAGCAAGAGATAGCAAAGCTGAAGTCTGCTGTACGGGACCTCAAAGCTCAACTCAAGCCAACATCAATGCAGGCAAGAAGGTTCTTATTAGATCCAGTAATCCATGAAGAGTTTACACGGTTAAAGAATTTAGTTGCGGAAAAGGACACAAGACTAAAGGAGTTGCAAGATCAAATGTCTGCTGTAAAATTTACTTCCCAAAGCAAGATGGGGAAGTTGCTAATGGCTAAATGTAAAACTCTGCAAGAGGAAAATGAAGAGATTGGGCTTCAAGCTTCTGAGGGAAAGATGCATGAATTAGCAATGAAACTTTCATTGCAGAAAGATCAGAATTCAGAGCTCAGAAATCAATTTGAAGCATTTTCTACAGAGTTGCAGAAACATATGGATGGATTGACCAATGATGTGGAAAGATCAAATGAAACGGTTTTCATGCTGCAAGGTAAATTAGACGAGAAGGATTTAGAGATTGAAAGACTGAAAGATGAGTTGCAACAAAAAAAGCTCCAGAGAGAACGGGAGAGCAAATGCAGCACGTAA

Protein sequence

>Msa1330410

MSSPTLDDQEFDFGERFTGTRSDTVSHKRSSAEFDDGNFDNDPYGKKAKTTAEVEAASGVTTGMILSLRESLQDCKETLDSCLNELEDAQYEIQNWRSAFQNAPFIPAGTTPVPKLVINYLQALKSSVESLADQLEKAKKKEVAFIVTFAKREQEIAKLKSAVRDLKAQLKPTSMQARRFLLDPVIHEEFTRLKNLVAEKDTRLKELQDQMSAVKFTSQSKMGKLLMAKCKTLQEENEEIGLQASEGKMHELAMKLSLQKDQNSELRNQFEAFSTELQKHMDGLTNDVERSNETVFMLQGKLDEKDLEIERLKDELQQKKLQRERESKCST*