Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051900 | XP_003589169.1 | 99.412 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051900 | sp|Q9LDD1|BRG3_ARATH | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 4.93e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051900 | G7I3I5 | 99.412 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051900 | Msa0144880 | 0.896308 | 4.180087e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051900 | MtrunA17_Chr1g0153261 | 99.412 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 0.0 | 698 |
| Msa0051900 | MtrunA17_Chr5g0400041 | 32.627 | 236 | 142 | 4 | 118 | 340 | 103 | 334 | 4.98e-34 | 127 |
| Msa0051900 | MtrunA17_Chr2g0311981 | 27.941 | 340 | 196 | 10 | 38 | 340 | 38 | 365 | 6.28e-33 | 125 |
| Msa0051900 | MtrunA17_Chr4g0055201 | 31.373 | 255 | 148 | 6 | 106 | 340 | 84 | 331 | 2.27e-25 | 104 |
| Msa0051900 | MtrunA17_Chr8g0358261 | 25.974 | 231 | 124 | 3 | 142 | 338 | 90 | 307 | 5.69e-22 | 94.4 |
| Msa0051900 | MtrunA17_Chr2g0291661 | 29.851 | 201 | 112 | 3 | 145 | 330 | 122 | 308 | 5.87e-22 | 94.7 |
| Msa0051900 | MtrunA17_Chr4g0043501 | 30.052 | 193 | 124 | 4 | 141 | 330 | 98 | 282 | 8.47e-20 | 88.2 |
| Msa0051900 | MtrunA17_Chr3g0145641 | 32.386 | 176 | 95 | 4 | 153 | 328 | 19 | 170 | 8.77e-19 | 82.8 |
| Msa0051900 | MtrunA17_Chr4g0018631 | 29.050 | 179 | 114 | 3 | 150 | 328 | 34 | 199 | 1.67e-17 | 80.1 |
| Msa0051900 | MtrunA17_Chr2g0319361 | 27.027 | 185 | 120 | 5 | 151 | 332 | 72 | 244 | 3.61e-13 | 68.6 |
| Msa0051900 | MtrunA17_Chr4g0017931 | 24.257 | 202 | 134 | 4 | 137 | 338 | 66 | 248 | 4.03e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051900 | AT1G45976.1 | 65.325 | 323 | 101 | 3 | 22 | 340 | 10 | 325 | 1.91e-154 | 436 |
| Msa0051900 | AT1G60610.2 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 5.28e-45 | 157 |
| Msa0051900 | AT1G60610.4 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 5.28e-45 | 157 |
| Msa0051900 | AT1G60610.1 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 5.28e-45 | 157 |
| Msa0051900 | AT1G60610.5 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 5.28e-45 | 157 |
| Msa0051900 | AT1G60610.3 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 5.28e-45 | 157 |
| Msa0051900 | AT1G10650.2 | 35.146 | 239 | 135 | 3 | 118 | 340 | 48 | 282 | 3.74e-40 | 143 |
| Msa0051900 | AT1G10650.1 | 34.328 | 268 | 154 | 4 | 91 | 340 | 75 | 338 | 4.71e-40 | 144 |
| Msa0051900 | AT3G12920.1 | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 5.02e-29 | 114 |
| Msa0051900 | AT5G47050.1 | 31.739 | 230 | 145 | 5 | 115 | 339 | 76 | 298 | 5.67e-28 | 111 |
| Msa0051900 | AT1G32740.3 | 33.778 | 225 | 117 | 6 | 118 | 328 | 49 | 255 | 4.36e-27 | 107 |
| Msa0051900 | AT1G32740.2 | 33.778 | 225 | 117 | 6 | 118 | 328 | 49 | 255 | 4.36e-27 | 107 |
| Msa0051900 | AT1G32740.1 | 33.778 | 225 | 117 | 6 | 118 | 328 | 93 | 299 | 6.81e-27 | 108 |
| Msa0051900 | AT1G32740.4 | 33.778 | 225 | 117 | 6 | 118 | 328 | 82 | 288 | 7.50e-27 | 108 |
| Msa0051900 | AT1G79110.2 | 32.780 | 241 | 138 | 4 | 124 | 340 | 113 | 353 | 1.44e-26 | 108 |
| Msa0051900 | AT1G79110.3 | 32.780 | 241 | 138 | 4 | 124 | 340 | 91 | 331 | 1.77e-26 | 107 |
| Msa0051900 | AT4G17680.2 | 31.405 | 242 | 143 | 5 | 107 | 338 | 12 | 240 | 3.59e-26 | 104 |
| Msa0051900 | AT4G35070.1 | 35.829 | 187 | 109 | 5 | 150 | 332 | 77 | 256 | 5.82e-26 | 104 |
| Msa0051900 | AT4G17680.1 | 31.466 | 232 | 138 | 4 | 115 | 338 | 94 | 312 | 6.70e-26 | 105 |
| Msa0051900 | AT4G35070.2 | 35.829 | 187 | 109 | 5 | 150 | 332 | 22 | 201 | 1.05e-25 | 102 |
| Msa0051900 | AT1G79110.1 | 32.787 | 244 | 137 | 5 | 124 | 340 | 113 | 356 | 4.85e-25 | 104 |
| Msa0051900 | AT5G45100.2 | 29.954 | 217 | 115 | 5 | 141 | 340 | 69 | 265 | 3.56e-20 | 89.0 |
| Msa0051900 | AT5G45100.1 | 29.954 | 217 | 115 | 5 | 141 | 340 | 96 | 292 | 5.12e-20 | 89.0 |
| Msa0051900 | AT4G17680.3 | 31.892 | 185 | 109 | 3 | 162 | 338 | 13 | 188 | 7.88e-20 | 86.3 |
| Msa0051900 | AT4G19700.1 | 27.305 | 282 | 164 | 8 | 57 | 328 | 40 | 290 | 9.51e-17 | 80.1 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCAAAAGCTTATGCTTT+TGG | 0.226187 | 1_2:-6064029 | None:intergenic |
| TGTCCAAAAGCATAAGCTTT+TGG | 0.257102 | 1_2:+6064026 | Msa0051900:three_prime_UTR |
| TTTCATCAAGTCTTTCATAT+TGG | 0.300589 | 1_2:-6063628 | None:intergenic |
| AACCACAAACCAAATCTTTC+AGG | 0.323593 | 1_2:+6061519 | Msa0051900:CDS |
| GTTGAGGTTGTGGTTGTTGC+TGG | 0.326770 | 1_2:-6061499 | None:intergenic |
| GTTGATTTGCATTGGAATTT+CGG | 0.328434 | 1_2:+6062350 | Msa0051900:CDS |
| CGATCTGTGTCCACGGGGTT+AGG | 0.331116 | 1_2:+6062458 | Msa0051900:CDS |
| AAACATCAACAAGAGGAATA+TGG | 0.343288 | 1_2:+6063383 | Msa0051900:CDS |
| CTCCATGCCGATGAATTTAG+AGG | 0.351654 | 1_2:-6063760 | None:intergenic |
| AAAGATTTGGTTTGTGGTTG+AGG | 0.373807 | 1_2:-6061515 | None:intergenic |
| TAGTAATTACCTGAAAGATT+TGG | 0.385861 | 1_2:-6061528 | None:intergenic |
| TCGGCTTTATTGTCTCTCAT+AGG | 0.391703 | 1_2:+6062521 | Msa0051900:CDS |
| TGCTCCGGGTCCTGTCATTC+CGG | 0.393035 | 1_2:+6062307 | Msa0051900:CDS |
| CATGGAGGTCTACATGTAAC+TGG | 0.398646 | 1_2:+6063776 | Msa0051900:exon |
| AACACTCGCCTGGCGTCAAC+AGG | 0.404733 | 1_2:+6062494 | Msa0051900:CDS |
| GCTGGTAGTGGCGTTGAAAC+TGG | 0.406582 | 1_2:-6061481 | None:intergenic |
| AGAAATTTACAAACAATTGA+AGG | 0.413418 | 1_2:+6061708 | Msa0051900:intron |
| TTGGTTTGTGGTTGAGGTTG+TGG | 0.413733 | 1_2:-6061509 | None:intergenic |
| CGGCTTTATTGTCTCTCATA+GGG | 0.421365 | 1_2:+6062522 | Msa0051900:CDS |
| AAAAGCCATGGAGGAGGAGG+AGG | 0.422303 | 1_2:-6061450 | None:intergenic |
| TATGGAACTTGAAGATCAAA+TGG | 0.436027 | 1_2:+6063401 | Msa0051900:CDS |
| GAGGAAAAGACTAAAAGAAC+AGG | 0.439039 | 1_2:+6062385 | Msa0051900:CDS |
| TTTGCATTGGAATTTCGGTT+TGG | 0.453573 | 1_2:+6062355 | Msa0051900:CDS |
| CTTCTTTACTGTCCCTACCT+TGG | 0.456069 | 1_2:-6063521 | None:intergenic |
| TGCATACATGGAGGAATGTA+AGG | 0.466674 | 1_2:-6061795 | None:intergenic |
| GAAAGACTTGATGAAATGTA+AGG | 0.468795 | 1_2:+6063635 | Msa0051900:CDS |
| GGTCCTGTCATTCCGGCTGA+TGG | 0.469575 | 1_2:+6062314 | Msa0051900:CDS |
| CAACCTCGATCTGTGTCCAC+GGG | 0.471862 | 1_2:+6062452 | Msa0051900:CDS |
| GATACAGCTTCTTGCTGTAA+TGG | 0.478491 | 1_2:+6063567 | Msa0051900:CDS |
| GTTGTGGTTGTTGCTGGTAG+TGG | 0.484704 | 1_2:-6061493 | None:intergenic |
| AAGAAAAGCCATGGAGGAGG+AGG | 0.486504 | 1_2:-6061453 | None:intergenic |
| TACCTGAAAGATTTGGTTTG+TGG | 0.491471 | 1_2:-6061521 | None:intergenic |
| CTTCCATCAGCCGGAATGAC+AGG | 0.496376 | 1_2:-6062317 | None:intergenic |
| CAAGGTAGGGACAGTAAAGA+AGG | 0.497061 | 1_2:+6063522 | Msa0051900:CDS |
| CCGAGTCTCCTGTTGACGCC+AGG | 0.501876 | 1_2:-6062502 | None:intergenic |
| TGATCGTGAGTTACAGCAGC+AGG | 0.505797 | 1_2:+6062553 | Msa0051900:CDS |
| GCAACCTCGATCTGTGTCCA+CGG | 0.508164 | 1_2:+6062451 | Msa0051900:CDS |
| AATTTAGAGGATTGACATAG+AGG | 0.508849 | 1_2:-6063747 | None:intergenic |
| TCTCAAGTTTAACCTCCAAC+AGG | 0.509968 | 1_2:+6063491 | Msa0051900:CDS |
| ATGGTGGTGTTGATTTGCAT+TGG | 0.512381 | 1_2:+6062342 | Msa0051900:CDS |
| GTCGCTTGATAACACTCGCC+TGG | 0.520085 | 1_2:+6062484 | Msa0051900:CDS |
| AAAACTTCGCGAGAAAGAAA+CGG | 0.522431 | 1_2:+6063353 | Msa0051900:CDS |
| GGACAGATTTCTCAAACTGC+AGG | 0.527660 | 1_2:+6062586 | Msa0051900:CDS |
| TACCTTGGAGATATGCCTGT+TGG | 0.532431 | 1_2:-6063506 | None:intergenic |
| ATCCTCTAAATTCATCGGCA+TGG | 0.537187 | 1_2:+6063758 | Msa0051900:CDS |
| AGGTCAGATGTCGCAGCAGA+TGG | 0.539736 | 1_2:+6061728 | Msa0051900:CDS |
| CTTGGAGATATGCCTGTTGG+AGG | 0.541227 | 1_2:-6063503 | None:intergenic |
| CAGAGGCAAAGATGCTTGCA+AGG | 0.548296 | 1_2:-6063693 | None:intergenic |
| AAAGGAAAGAGGGGTAAGTG+TGG | 0.548972 | 1_2:+6061330 | None:intergenic |
| CGAGGGAATGTGAATGTGAA+TGG | 0.549634 | 1_2:-6061389 | None:intergenic |
| TGTCAATCCTCTAAATTCAT+CGG | 0.564430 | 1_2:+6063753 | Msa0051900:CDS |
| GACTGATCTTGCAAATCAGT+AGG | 0.565941 | 1_2:-6061762 | None:intergenic |
| AGGGACAGTAAAGAAGGGTG+TGG | 0.567717 | 1_2:+6063528 | Msa0051900:CDS |
| TCTAATAGGGTGAACAATTG+CGG | 0.572853 | 1_2:+6063259 | Msa0051900:intron |
| CCACCATCACTTCCATCAGC+CGG | 0.574524 | 1_2:-6062326 | None:intergenic |
| CCTGGCGTCAACAGGAGACT+CGG | 0.578852 | 1_2:+6062502 | Msa0051900:CDS |
| AACAGGCATATCTCCAAGGT+AGG | 0.579800 | 1_2:+6063508 | Msa0051900:CDS |
| TAATTCTCAGATATCTTCTG+TGG | 0.580087 | 1_2:+6062421 | Msa0051900:CDS |
| TCAGCCGGAATGACAGGACC+CGG | 0.584748 | 1_2:-6062311 | None:intergenic |
| TTGAAGAAAAGCCATGGAGG+AGG | 0.587815 | 1_2:-6061456 | None:intergenic |
| CTGGTCTTGAAGAAAAGCCA+TGG | 0.589502 | 1_2:-6061462 | None:intergenic |
| GAACAGCTAAGTGTAGAAGC+AGG | 0.592248 | 1_2:+6063423 | Msa0051900:CDS |
| ACAGCAGCAGGATTTAGAGA+TGG | 0.603378 | 1_2:+6062565 | Msa0051900:CDS |
| TAAGTGTAGAAGCAGGCGCA+TGG | 0.605128 | 1_2:+6063430 | Msa0051900:CDS |
| TGTTTCAATCATTGAAGACA+AGG | 0.609124 | 1_2:+6063323 | Msa0051900:CDS |
| GAGAAGAGAGAAGTCTCTCG+AGG | 0.610894 | 1_2:-6061407 | None:intergenic |
| ACTGATCTTGCAAATCAGTA+GGG | 0.612381 | 1_2:-6061761 | None:intergenic |
| CTCCAACAGGCATATCTCCA+AGG | 0.619146 | 1_2:+6063504 | Msa0051900:CDS |
| AGAAGAGAGAAGTCTCTCGA+GGG | 0.619491 | 1_2:-6061406 | None:intergenic |
| TACTTTCACAATCTTTACAG+AGG | 0.619763 | 1_2:-6063710 | None:intergenic |
| ACAGGCATATCTCCAAGGTA+GGG | 0.623265 | 1_2:+6063509 | Msa0051900:CDS |
| CCGGCTGATGGAAGTGATGG+TGG | 0.631778 | 1_2:+6062326 | Msa0051900:CDS |
| AGGTAGAAAACATCAACAAG+AGG | 0.632388 | 1_2:+6063376 | Msa0051900:CDS |
| CAGAGTCAACGAAGTGACGA+TGG | 0.636128 | 1_2:+6063662 | Msa0051900:CDS |
| CTCTAAATTCATCGGCATGG+AGG | 0.640451 | 1_2:+6063761 | Msa0051900:CDS |
| ATTCCGGCTGATGGAAGTGA+TGG | 0.641493 | 1_2:+6062323 | Msa0051900:CDS |
| GGCTTTATTGTCTCTCATAG+GGG | 0.643215 | 1_2:+6062523 | Msa0051900:CDS |
| AAGGTAGGGACAGTAAAGAA+GGG | 0.646022 | 1_2:+6063523 | Msa0051900:CDS |
| AAACTAGTTACAATGTGTCA+CGG | 0.649683 | 1_2:-6063911 | None:intergenic |
| TGTCACGGTACTTGTTACAA+TGG | 0.651312 | 1_2:-6063896 | None:intergenic |
| AACCCCGTGGACACAGATCG+AGG | 0.671438 | 1_2:-6062455 | None:intergenic |
| ATTTCGGTTTGGAACCAGAG+AGG | 0.674088 | 1_2:+6062366 | Msa0051900:CDS |
| GTCTTGAAGAAAAGCCATGG+AGG | 0.676482 | 1_2:-6061459 | None:intergenic |
| AACCTCGATCTGTGTCCACG+GGG | 0.677662 | 1_2:+6062453 | Msa0051900:CDS |
| ACTATGATAAGCAACAACAC+AGG | 0.683625 | 1_2:-6063851 | None:intergenic |
| AGAAGGGTGTGGTGACAGCG+AGG | 0.695907 | 1_2:+6063539 | Msa0051900:CDS |
| TGTGAATGTGAATGGCGATG+AGG | 0.706676 | 1_2:-6061381 | None:intergenic |
| AAGCGACAATCCTAACCCCG+TGG | 0.716176 | 1_2:-6062468 | None:intergenic |
| ACTTCGCGAGAAAGAAACGG+AGG | 0.727027 | 1_2:+6063356 | Msa0051900:CDS |
| ATACATGGAGGAATGTAAGG+TGG | 0.751566 | 1_2:-6061792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAAAATATGAATTTTT+AGG | + | chr1_2:6061904-6061923 | Msa0051900:intron | 10.0% |
| !!! | TATTTTGTTTTTGATTTTTT+GGG | + | chr1_2:6062261-6062280 | Msa0051900:intron | 10.0% |
| !! | TGTGTAAATATTAAATAATA+TGG | - | chr1_2:6062742-6062761 | None:intergenic | 10.0% |
| !!! | TAATTAATTTTTTCTCTAAT+AGG | + | chr1_2:6063245-6063264 | Msa0051900:intron | 10.0% |
| !!! | AATTAATTTTTTCTCTAATA+GGG | + | chr1_2:6063246-6063265 | Msa0051900:intron | 10.0% |
| !!! | ATTATTTTGGAATATTAAGA+GGG | - | chr1_2:6061561-6061580 | None:intergenic | 15.0% |
| !!! | AATTATTTTGGAATATTAAG+AGG | - | chr1_2:6061562-6061581 | None:intergenic | 15.0% |
| !!! | CACTAATCTTAATTAATTTT+TGG | + | chr1_2:6061677-6061696 | Msa0051900:intron | 15.0% |
| !!! | ATATGAATTTTTAGGTTTTT+TGG | + | chr1_2:6061912-6061931 | Msa0051900:intron | 15.0% |
| !! | TTAATTCAAAATAACCAAAA+GGG | - | chr1_2:6062078-6062097 | None:intergenic | 15.0% |
| !! | TTTAATTCAAAATAACCAAA+AGG | - | chr1_2:6062079-6062098 | None:intergenic | 15.0% |
| !!! | CTATTTTGTTTTTGATTTTT+TGG | + | chr1_2:6062260-6062279 | Msa0051900:intron | 15.0% |
| !!! | ATTTTGTTTTTGATTTTTTG+GGG | + | chr1_2:6062262-6062281 | Msa0051900:intron | 15.0% |
| !!! | TATTCAGTTTTAGTAAATTT+TGG | + | chr1_2:6063971-6063990 | Msa0051900:three_prime_UTR | 15.0% |
| !!! | TTATTTTGGAATATTAAGAG+GGG | - | chr1_2:6061560-6061579 | None:intergenic | 20.0% |
| !!! | GAAAGAAATTGGAATTATTT+TGG | - | chr1_2:6061574-6061593 | None:intergenic | 20.0% |
| !! | AGAGAGATTAAAAAAATGTT+TGG | - | chr1_2:6061611-6061630 | None:intergenic | 20.0% |
| !! | AGTGAGAAATAGATAATTAA+AGG | - | chr1_2:6061661-6061680 | None:intergenic | 20.0% |
| !! | AGAAATTTACAAACAATTGA+AGG | + | chr1_2:6061708-6061727 | Msa0051900:intron | 20.0% |
| !!! | GTCTATTTAGTATTTTCTTT+AGG | + | chr1_2:6062021-6062040 | Msa0051900:intron | 20.0% |
| !!! | ATTTTCTTTAGGTTTTTCTT+AGG | + | chr1_2:6062032-6062051 | Msa0051900:intron | 20.0% |
| !!! | TTTTCTTTAGGTTTTTCTTA+GGG | + | chr1_2:6062033-6062052 | Msa0051900:intron | 20.0% |
| !!! | TTTCTTTAGCATTTTATTGA+AGG | + | chr1_2:6062173-6062192 | Msa0051900:intron | 20.0% |
| !!! | TTCTTTAGCATTTTATTGAA+GGG | + | chr1_2:6062174-6062193 | Msa0051900:intron | 20.0% |
| !!! | GGGTTTTTAGATTTAATTTT+GGG | + | chr1_2:6062195-6062214 | Msa0051900:intron | 20.0% |
| !!! | TTTTGTTTTTGATTTTTTGG+GGG | + | chr1_2:6062263-6062282 | Msa0051900:intron | 20.0% |
| !! | AAATGTAAATTCATCATGAT+CGG | + | chr1_2:6062708-6062727 | Msa0051900:intron | 20.0% |
| !!! | TTTCATATTGGATTTTTCAT+TGG | - | chr1_2:6063619-6063638 | None:intergenic | 20.0% |
| !!! | AACTGGATATTTTATTTCAA+CGG | + | chr1_2:6063793-6063812 | Msa0051900:exon | 20.0% |
| ! | TAGTAATTACCTGAAAGATT+TGG | - | chr1_2:6061531-6061550 | None:intergenic | 25.0% |
| ! | AAAATGTTTGGTAAAGTGAA+AGG | - | chr1_2:6061599-6061618 | None:intergenic | 25.0% |
| ! | AAATCATTCTACAACACAAA+AGG | - | chr1_2:6061974-6061993 | None:intergenic | 25.0% |
| !!! | TTTCTTTAGGTTTTTCTTAG+GGG | + | chr1_2:6062034-6062053 | Msa0051900:intron | 25.0% |
| !! | TCTTTAGCATTTTATTGAAG+GGG | + | chr1_2:6062175-6062194 | Msa0051900:intron | 25.0% |
| !!! | GGGGTTTTTAGATTTAATTT+TGG | + | chr1_2:6062194-6062213 | Msa0051900:intron | 25.0% |
| !!! | ACTAAAAGAACAGGATTTTT+TGG | + | chr1_2:6062394-6062413 | Msa0051900:CDS | 25.0% |
| !!! | TTTAGCATCTTATTGGTTTA+TGG | + | chr1_2:6062633-6062652 | Msa0051900:intron | 25.0% |
| !!! | TTAGCATCTTATTGGTTTAT+GGG | + | chr1_2:6062634-6062653 | Msa0051900:intron | 25.0% |
| ! | TTCTTCATAGATGCTAAATT+AGG | - | chr1_2:6063190-6063209 | None:intergenic | 25.0% |
| !!! | AACAATTTTAGAGAAAGTTC+AGG | + | chr1_2:6063284-6063303 | Msa0051900:CDS | 25.0% |
| !! | AATCATGTTTTCGTTATATC+TGG | - | chr1_2:6063466-6063485 | None:intergenic | 25.0% |
| ! | TTTCATCAAGTCTTTCATAT+TGG | - | chr1_2:6063631-6063650 | None:intergenic | 25.0% |
| !!! | CAGTTTTAGTAAATTTTGGA+AGG | + | chr1_2:6063975-6063994 | Msa0051900:three_prime_UTR | 25.0% |
| AGTGAAAGGTAGAAAGAAAT+TGG | - | chr1_2:6061585-6061604 | None:intergenic | 30.0% | |
| AGATGAAGAATTTGCATACA+TGG | - | chr1_2:6061810-6061829 | None:intergenic | 30.0% | |
| TTGACTCAAAATGACCAAAA+GGG | - | chr1_2:6061944-6061963 | None:intergenic | 30.0% | |
| TTTGACTCAAAATGACCAAA+AGG | - | chr1_2:6061945-6061964 | None:intergenic | 30.0% | |
| TCACAACACATGAAAATGTA+GGG | - | chr1_2:6062240-6062259 | None:intergenic | 30.0% | |
| !! | GTTGATTTGCATTGGAATTT+CGG | + | chr1_2:6062350-6062369 | Msa0051900:CDS | 30.0% |
| TAATTCTCAGATATCTTCTG+TGG | + | chr1_2:6062421-6062440 | Msa0051900:CDS | 30.0% | |
| ! | TGTCTAGTTTAGCATCTTAT+TGG | + | chr1_2:6062626-6062645 | Msa0051900:intron | 30.0% |
| !! | TTTTTGTGCTTGTTAGACAA+TGG | + | chr1_2:6062890-6062909 | Msa0051900:intron | 30.0% |
| ! | TTTTCTCTATCTTTGGACAA+TGG | - | chr1_2:6062941-6062960 | None:intergenic | 30.0% |
| ! | CACAATCTTTTCTCTATCTT+TGG | - | chr1_2:6062948-6062967 | None:intergenic | 30.0% |
| ! | TGATTTGTGAAGTAATCGAT+TGG | - | chr1_2:6063052-6063071 | None:intergenic | 30.0% |
| TGTTTCAATCATTGAAGACA+AGG | + | chr1_2:6063323-6063342 | Msa0051900:CDS | 30.0% | |
| AAACATCAACAAGAGGAATA+TGG | + | chr1_2:6063383-6063402 | Msa0051900:CDS | 30.0% | |
| TATGGAACTTGAAGATCAAA+TGG | + | chr1_2:6063401-6063420 | Msa0051900:CDS | 30.0% | |
| GAAAGACTTGATGAAATGTA+AGG | + | chr1_2:6063635-6063654 | Msa0051900:CDS | 30.0% | |
| TACTTTCACAATCTTTACAG+AGG | - | chr1_2:6063713-6063732 | None:intergenic | 30.0% | |
| AATTTAGAGGATTGACATAG+AGG | - | chr1_2:6063750-6063769 | None:intergenic | 30.0% | |
| TGTCAATCCTCTAAATTCAT+CGG | + | chr1_2:6063753-6063772 | Msa0051900:CDS | 30.0% | |
| AAACTAGTTACAATGTGTCA+CGG | - | chr1_2:6063914-6063933 | None:intergenic | 30.0% | |
| !! | AAAGATTTGGTTTGTGGTTG+AGG | - | chr1_2:6061518-6061537 | None:intergenic | 35.0% |
| AACCACAAACCAAATCTTTC+AGG | + | chr1_2:6061519-6061538 | Msa0051900:CDS | 35.0% | |
| !! | TACCTGAAAGATTTGGTTTG+TGG | - | chr1_2:6061524-6061543 | None:intergenic | 35.0% |
| ACTGATCTTGCAAATCAGTA+GGG | - | chr1_2:6061764-6061783 | None:intergenic | 35.0% | |
| TGAAGAATTTGCATACATGG+AGG | - | chr1_2:6061807-6061826 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTAGCTACCCTTT+TGG | + | chr1_2:6061927-6061946 | Msa0051900:intron | 35.0% |
| ! | GTAGATATAAGCTACCCTTT+TGG | + | chr1_2:6062061-6062080 | Msa0051900:intron | 35.0% |
| GTCACAACACATGAAAATGT+AGG | - | chr1_2:6062241-6062260 | None:intergenic | 35.0% | |
| TTTGCATTGGAATTTCGGTT+TGG | + | chr1_2:6062355-6062374 | Msa0051900:CDS | 35.0% | |
| !! | TCTTTTAGTCTTTTCCTCTC+TGG | - | chr1_2:6062383-6062402 | None:intergenic | 35.0% |
| GAGGAAAAGACTAAAAGAAC+AGG | + | chr1_2:6062385-6062404 | Msa0051900:CDS | 35.0% | |
| AATTCATCATGATCGGTAAC+TGG | + | chr1_2:6062715-6062734 | Msa0051900:intron | 35.0% | |
| ! | GTATGCTGATGATTTGTAAG+TGG | + | chr1_2:6062775-6062794 | Msa0051900:intron | 35.0% |
| GGTTAGAATGCATCACAATA+CGG | - | chr1_2:6063146-6063165 | None:intergenic | 35.0% | |
| CTCTTACGAGTACAATATAC+AGG | - | chr1_2:6063167-6063186 | None:intergenic | 35.0% | |
| TCTAATAGGGTGAACAATTG+CGG | + | chr1_2:6063259-6063278 | Msa0051900:intron | 35.0% | |
| ! | TTTCTTTCTCGCGAAGTTTT+TGG | - | chr1_2:6063353-6063372 | None:intergenic | 35.0% |
| AAAACTTCGCGAGAAAGAAA+CGG | + | chr1_2:6063353-6063372 | Msa0051900:CDS | 35.0% | |
| AGGTAGAAAACATCAACAAG+AGG | + | chr1_2:6063376-6063395 | Msa0051900:CDS | 35.0% | |
| ACTATGATAAGCAACAACAC+AGG | - | chr1_2:6063854-6063873 | None:intergenic | 35.0% | |
| !! | TGTCCAAAAGCATAAGCTTT+TGG | + | chr1_2:6064026-6064045 | Msa0051900:three_prime_UTR | 35.0% |
| !! | GTCCAAAAGCATAAGCTTTT+GGG | + | chr1_2:6064027-6064046 | Msa0051900:three_prime_UTR | 35.0% |
| ! | ATCCCAAAAGCTTATGCTTT+TGG | - | chr1_2:6064032-6064051 | None:intergenic | 35.0% |
| GAGGAAGAAGAAGAAGAAGA+AGG | - | chr1_2:6061434-6061453 | None:intergenic | 40.0% | |
| GACTGATCTTGCAAATCAGT+AGG | - | chr1_2:6061765-6061784 | None:intergenic | 40.0% | |
| ATACATGGAGGAATGTAAGG+TGG | - | chr1_2:6061795-6061814 | None:intergenic | 40.0% | |
| TGCATACATGGAGGAATGTA+AGG | - | chr1_2:6061798-6061817 | None:intergenic | 40.0% | |
| !!! | TCATGTAGTTGGTTTTGCTC+CGG | + | chr1_2:6062292-6062311 | Msa0051900:CDS | 40.0% |
| !! | ATGGTGGTGTTGATTTGCAT+TGG | + | chr1_2:6062342-6062361 | Msa0051900:CDS | 40.0% |
| !! | TCGGCTTTATTGTCTCTCAT+AGG | + | chr1_2:6062521-6062540 | Msa0051900:CDS | 40.0% |
| !! | CGGCTTTATTGTCTCTCATA+GGG | + | chr1_2:6062522-6062541 | Msa0051900:CDS | 40.0% |
| !! | GGCTTTATTGTCTCTCATAG+GGG | + | chr1_2:6062523-6062542 | Msa0051900:CDS | 40.0% |
| TCTCAAGTTTAACCTCCAAC+AGG | + | chr1_2:6063491-6063510 | Msa0051900:CDS | 40.0% | |
| AAGGTAGGGACAGTAAAGAA+GGG | + | chr1_2:6063523-6063542 | Msa0051900:CDS | 40.0% | |
| ! | GATACAGCTTCTTGCTGTAA+TGG | + | chr1_2:6063567-6063586 | Msa0051900:CDS | 40.0% |
| ATCCTCTAAATTCATCGGCA+TGG | + | chr1_2:6063758-6063777 | Msa0051900:CDS | 40.0% | |
| ! | TGTCACGGTACTTGTTACAA+TGG | - | chr1_2:6063899-6063918 | None:intergenic | 40.0% |
| TGTGAATGTGAATGGCGATG+AGG | - | chr1_2:6061384-6061403 | None:intergenic | 45.0% | |
| CGAGGGAATGTGAATGTGAA+TGG | - | chr1_2:6061392-6061411 | None:intergenic | 45.0% | |
| AGAAGAGAGAAGTCTCTCGA+GGG | - | chr1_2:6061409-6061428 | None:intergenic | 45.0% | |
| TTGAAGAAAAGCCATGGAGG+AGG | - | chr1_2:6061459-6061478 | None:intergenic | 45.0% | |
| GTCTTGAAGAAAAGCCATGG+AGG | - | chr1_2:6061462-6061481 | None:intergenic | 45.0% | |
| !! | CTGGTCTTGAAGAAAAGCCA+TGG | - | chr1_2:6061465-6061484 | None:intergenic | 45.0% |
| !! | TTGGTTTGTGGTTGAGGTTG+TGG | - | chr1_2:6061512-6061531 | None:intergenic | 45.0% |
| ! | GGGGGTTTAGTTCATGTAGT+TGG | + | chr1_2:6062281-6062300 | Msa0051900:intron | 45.0% |
| !!! | CATGTAGTTGGTTTTGCTCC+GGG | + | chr1_2:6062293-6062312 | Msa0051900:CDS | 45.0% |
| !! | ATTTCGGTTTGGAACCAGAG+AGG | + | chr1_2:6062366-6062385 | Msa0051900:CDS | 45.0% |
| ACAGCAGCAGGATTTAGAGA+TGG | + | chr1_2:6062565-6062584 | Msa0051900:CDS | 45.0% | |
| GGACAGATTTCTCAAACTGC+AGG | + | chr1_2:6062586-6062605 | Msa0051900:CDS | 45.0% | |
| !! | CTTTCTCGCGAAGTTTTTGG+AGG | - | chr1_2:6063350-6063369 | None:intergenic | 45.0% |
| GAACAGCTAAGTGTAGAAGC+AGG | + | chr1_2:6063423-6063442 | Msa0051900:CDS | 45.0% | |
| TACCTTGGAGATATGCCTGT+TGG | - | chr1_2:6063509-6063528 | None:intergenic | 45.0% | |
| AACAGGCATATCTCCAAGGT+AGG | + | chr1_2:6063508-6063527 | Msa0051900:CDS | 45.0% | |
| ACAGGCATATCTCCAAGGTA+GGG | + | chr1_2:6063509-6063528 | Msa0051900:CDS | 45.0% | |
| CTTCTTTACTGTCCCTACCT+TGG | - | chr1_2:6063524-6063543 | None:intergenic | 45.0% | |
| CAAGGTAGGGACAGTAAAGA+AGG | + | chr1_2:6063522-6063541 | Msa0051900:CDS | 45.0% | |
| CTCCATGCCGATGAATTTAG+AGG | - | chr1_2:6063763-6063782 | None:intergenic | 45.0% | |
| CTCTAAATTCATCGGCATGG+AGG | + | chr1_2:6063761-6063780 | Msa0051900:CDS | 45.0% | |
| CATGGAGGTCTACATGTAAC+TGG | + | chr1_2:6063776-6063795 | Msa0051900:exon | 45.0% | |
| GAGAAGAGAGAAGTCTCTCG+AGG | - | chr1_2:6061410-6061429 | None:intergenic | 50.0% | |
| AAGAAAAGCCATGGAGGAGG+AGG | - | chr1_2:6061456-6061475 | None:intergenic | 50.0% | |
| GTTGTGGTTGTTGCTGGTAG+TGG | - | chr1_2:6061496-6061515 | None:intergenic | 50.0% | |
| GTTGAGGTTGTGGTTGTTGC+TGG | - | chr1_2:6061502-6061521 | None:intergenic | 50.0% | |
| ATTCCGGCTGATGGAAGTGA+TGG | + | chr1_2:6062323-6062342 | Msa0051900:CDS | 50.0% | |
| TGATCGTGAGTTACAGCAGC+AGG | + | chr1_2:6062553-6062572 | Msa0051900:CDS | 50.0% | |
| ! | CTCAAACTGCAGGTTAGCTC+AGG | + | chr1_2:6062596-6062615 | Msa0051900:intron | 50.0% |
| ACTTCGCGAGAAAGAAACGG+AGG | + | chr1_2:6063356-6063375 | Msa0051900:CDS | 50.0% | |
| TAAGTGTAGAAGCAGGCGCA+TGG | + | chr1_2:6063430-6063449 | Msa0051900:CDS | 50.0% | |
| CTTGGAGATATGCCTGTTGG+AGG | - | chr1_2:6063506-6063525 | None:intergenic | 50.0% | |
| CTCCAACAGGCATATCTCCA+AGG | + | chr1_2:6063504-6063523 | Msa0051900:CDS | 50.0% | |
| AGGGACAGTAAAGAAGGGTG+TGG | + | chr1_2:6063528-6063547 | Msa0051900:CDS | 50.0% | |
| CAGAGTCAACGAAGTGACGA+TGG | + | chr1_2:6063662-6063681 | Msa0051900:CDS | 50.0% | |
| CAGAGGCAAAGATGCTTGCA+AGG | - | chr1_2:6063696-6063715 | None:intergenic | 50.0% | |
| TTCTTCCTCCTCCTCCTCCA+TGG | + | chr1_2:6061445-6061464 | Msa0051900:exon | 55.0% | |
| AAAAGCCATGGAGGAGGAGG+AGG | - | chr1_2:6061453-6061472 | None:intergenic | 55.0% | |
| !! | GCTGGTAGTGGCGTTGAAAC+TGG | - | chr1_2:6061484-6061503 | None:intergenic | 55.0% |
| AGGTCAGATGTCGCAGCAGA+TGG | + | chr1_2:6061728-6061747 | Msa0051900:CDS | 55.0% | |
| CTTCCATCAGCCGGAATGAC+AGG | - | chr1_2:6062320-6062339 | None:intergenic | 55.0% | |
| CCACCATCACTTCCATCAGC+CGG | - | chr1_2:6062329-6062348 | None:intergenic | 55.0% | |
| GCAACCTCGATCTGTGTCCA+CGG | + | chr1_2:6062451-6062470 | Msa0051900:CDS | 55.0% | |
| CAACCTCGATCTGTGTCCAC+GGG | + | chr1_2:6062452-6062471 | Msa0051900:CDS | 55.0% | |
| AACCTCGATCTGTGTCCACG+GGG | + | chr1_2:6062453-6062472 | Msa0051900:CDS | 55.0% | |
| AAGCGACAATCCTAACCCCG+TGG | - | chr1_2:6062471-6062490 | None:intergenic | 55.0% | |
| ! | GTCGCTTGATAACACTCGCC+TGG | + | chr1_2:6062484-6062503 | Msa0051900:CDS | 55.0% |
| TGCTCCGGGTCCTGTCATTC+CGG | + | chr1_2:6062307-6062326 | Msa0051900:CDS | 60.0% | |
| TCAGCCGGAATGACAGGACC+CGG | - | chr1_2:6062314-6062333 | None:intergenic | 60.0% | |
| GGTCCTGTCATTCCGGCTGA+TGG | + | chr1_2:6062314-6062333 | Msa0051900:CDS | 60.0% | |
| CCGGCTGATGGAAGTGATGG+TGG | + | chr1_2:6062326-6062345 | Msa0051900:CDS | 60.0% | |
| AACCCCGTGGACACAGATCG+AGG | - | chr1_2:6062458-6062477 | None:intergenic | 60.0% | |
| CGATCTGTGTCCACGGGGTT+AGG | + | chr1_2:6062458-6062477 | Msa0051900:CDS | 60.0% | |
| AACACTCGCCTGGCGTCAAC+AGG | + | chr1_2:6062494-6062513 | Msa0051900:CDS | 60.0% | |
| CCTGGCGTCAACAGGAGACT+CGG | + | chr1_2:6062502-6062521 | Msa0051900:CDS | 60.0% | |
| ! | AGAAGGGTGTGGTGACAGCG+AGG | + | chr1_2:6063539-6063558 | Msa0051900:CDS | 60.0% |
| CCGAGTCTCCTGTTGACGCC+AGG | - | chr1_2:6062505-6062524 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6061341 | 6064070 | 6061341 | ID=Msa0051900;Name=Msa0051900 |
| chr1_2 | mRNA | 6061341 | 6064070 | 6061341 | ID=Msa0051900-mRNA-1;Parent=Msa0051900;Name=Msa0051900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=123|1|1|1|1|1|4|276|340 |
| chr1_2 | exon | 6061341 | 6061540 | 6061341 | ID=Msa0051900-mRNA-1:exon:1945;Parent=Msa0051900-mRNA-1 |
| chr1_2 | exon | 6061710 | 6061810 | 6061710 | ID=Msa0051900-mRNA-1:exon:1946;Parent=Msa0051900-mRNA-1 |
| chr1_2 | exon | 6062291 | 6062607 | 6062291 | ID=Msa0051900-mRNA-1:exon:1947;Parent=Msa0051900-mRNA-1 |
| chr1_2 | exon | 6063267 | 6064070 | 6063267 | ID=Msa0051900-mRNA-1:exon:1948;Parent=Msa0051900-mRNA-1 |
| chr1_2 | five_prime_UTR | 6061341 | 6061463 | 6061341 | ID=Msa0051900-mRNA-1:five_prime_utr;Parent=Msa0051900-mRNA-1 |
| chr1_2 | CDS | 6061464 | 6061540 | 6061464 | ID=Msa0051900-mRNA-1:cds;Parent=Msa0051900-mRNA-1 |
| chr1_2 | CDS | 6061710 | 6061810 | 6061710 | ID=Msa0051900-mRNA-1:cds;Parent=Msa0051900-mRNA-1 |
| chr1_2 | CDS | 6062291 | 6062607 | 6062291 | ID=Msa0051900-mRNA-1:cds;Parent=Msa0051900-mRNA-1 |
| chr1_2 | CDS | 6063267 | 6063794 | 6063267 | ID=Msa0051900-mRNA-1:cds;Parent=Msa0051900-mRNA-1 |
| chr1_2 | three_prime_UTR | 6063795 | 6064070 | 6063795 | ID=Msa0051900-mRNA-1:three_prime_utr;Parent=Msa0051900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
