Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144880 | XP_003589169.1 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144880 | sp|Q9LDD1|BRG3_ARATH | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 7.49e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144880 | G7I3I5 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051900 | Msa0144880 | 0.896308 | 4.180087e-76 | -8.615850e-47 |
| Msa0144880 | Msa0860820 | 0.806251 | 9.005321e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144880 | MtrunA17_Chr1g0153261 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 701 |
| Msa0144880 | MtrunA17_Chr5g0400041 | 32.627 | 236 | 142 | 4 | 118 | 340 | 103 | 334 | 1.09e-33 | 127 |
| Msa0144880 | MtrunA17_Chr2g0311981 | 27.941 | 340 | 196 | 10 | 38 | 340 | 38 | 365 | 4.08e-33 | 125 |
| Msa0144880 | MtrunA17_Chr4g0055201 | 30.980 | 255 | 149 | 5 | 106 | 340 | 84 | 331 | 1.84e-25 | 104 |
| Msa0144880 | MtrunA17_Chr8g0358261 | 26.606 | 218 | 139 | 3 | 142 | 338 | 90 | 307 | 5.69e-22 | 94.4 |
| Msa0144880 | MtrunA17_Chr2g0291661 | 29.851 | 201 | 112 | 3 | 145 | 330 | 122 | 308 | 6.05e-22 | 94.7 |
| Msa0144880 | MtrunA17_Chr4g0043501 | 30.052 | 193 | 124 | 4 | 141 | 330 | 98 | 282 | 9.16e-20 | 88.2 |
| Msa0144880 | MtrunA17_Chr3g0145641 | 32.386 | 176 | 95 | 4 | 153 | 328 | 19 | 170 | 8.09e-19 | 82.8 |
| Msa0144880 | MtrunA17_Chr4g0018631 | 29.050 | 179 | 114 | 4 | 150 | 328 | 34 | 199 | 1.19e-17 | 80.5 |
| Msa0144880 | MtrunA17_Chr2g0319361 | 26.842 | 190 | 114 | 6 | 151 | 332 | 72 | 244 | 4.37e-13 | 68.2 |
| Msa0144880 | MtrunA17_Chr4g0017931 | 24.257 | 202 | 134 | 4 | 137 | 338 | 66 | 248 | 4.34e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144880 | AT1G45976.1 | 65.635 | 323 | 100 | 3 | 22 | 340 | 10 | 325 | 3.40e-155 | 438 |
| Msa0144880 | AT1G60610.2 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa0144880 | AT1G60610.4 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa0144880 | AT1G60610.1 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa0144880 | AT1G60610.5 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa0144880 | AT1G60610.3 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa0144880 | AT1G10650.2 | 35.565 | 239 | 134 | 3 | 118 | 340 | 48 | 282 | 3.51e-40 | 143 |
| Msa0144880 | AT1G10650.1 | 34.701 | 268 | 153 | 4 | 91 | 340 | 75 | 338 | 4.86e-40 | 144 |
| Msa0144880 | AT3G12920.1 | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 7.62e-29 | 114 |
| Msa0144880 | AT5G47050.1 | 32.618 | 233 | 139 | 5 | 115 | 339 | 76 | 298 | 1.23e-27 | 110 |
| Msa0144880 | AT1G32740.3 | 35.398 | 226 | 112 | 8 | 118 | 328 | 49 | 255 | 3.82e-27 | 108 |
| Msa0144880 | AT1G32740.2 | 35.398 | 226 | 112 | 8 | 118 | 328 | 49 | 255 | 3.82e-27 | 108 |
| Msa0144880 | AT1G32740.1 | 35.398 | 226 | 112 | 8 | 118 | 328 | 93 | 299 | 4.31e-27 | 108 |
| Msa0144880 | AT1G32740.4 | 35.398 | 226 | 112 | 8 | 118 | 328 | 82 | 288 | 5.81e-27 | 108 |
| Msa0144880 | AT4G17680.2 | 31.405 | 242 | 143 | 5 | 107 | 338 | 12 | 240 | 3.59e-26 | 104 |
| Msa0144880 | AT4G17680.1 | 31.405 | 242 | 143 | 5 | 107 | 338 | 84 | 312 | 6.57e-26 | 105 |
| Msa0144880 | AT1G79110.2 | 32.365 | 241 | 139 | 4 | 124 | 340 | 113 | 353 | 8.33e-26 | 106 |
| Msa0144880 | AT1G79110.3 | 32.365 | 241 | 139 | 4 | 124 | 340 | 91 | 331 | 1.08e-25 | 105 |
| Msa0144880 | AT4G35070.1 | 35.294 | 187 | 110 | 5 | 150 | 332 | 77 | 256 | 2.93e-25 | 102 |
| Msa0144880 | AT4G35070.2 | 35.294 | 187 | 110 | 5 | 150 | 332 | 22 | 201 | 5.06e-25 | 100 |
| Msa0144880 | AT1G79110.1 | 32.377 | 244 | 138 | 5 | 124 | 340 | 113 | 356 | 2.59e-24 | 102 |
| Msa0144880 | AT5G45100.2 | 29.954 | 217 | 115 | 5 | 141 | 340 | 69 | 265 | 4.13e-20 | 89.0 |
| Msa0144880 | AT5G45100.1 | 29.954 | 217 | 115 | 5 | 141 | 340 | 96 | 292 | 5.49e-20 | 89.0 |
| Msa0144880 | AT4G17680.3 | 31.892 | 185 | 109 | 3 | 162 | 338 | 13 | 188 | 7.49e-20 | 86.3 |
| Msa0144880 | AT4G19700.1 | 27.305 | 282 | 164 | 8 | 57 | 328 | 40 | 290 | 1.13e-16 | 79.7 |
Find 90 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCAAAAGCTTATGCTTT+TGG | 0.226187 | 1_4:-4453528 | None:intergenic |
| TGTCCAAAAGCATAAGCTTT+TGG | 0.257102 | 1_4:+4453525 | Msa0144880:three_prime_UTR |
| TTTCATCAAGTCTTTCATAT+TGG | 0.300589 | 1_4:-4453127 | None:intergenic |
| AACCACAAACCAAATCTTTC+AGG | 0.323593 | 1_4:+4451022 | Msa0144880:CDS |
| GTTGAGGTTGTGGTTGTTGC+TGG | 0.326770 | 1_4:-4451002 | None:intergenic |
| GTTGATTTGCATTGGAATTT+CGG | 0.328434 | 1_4:+4451849 | Msa0144880:CDS |
| CGATCTGTGTCCACGGGGTT+AGG | 0.331116 | 1_4:+4451957 | Msa0144880:CDS |
| AAACATCAACAAGAGGAATA+TGG | 0.343288 | 1_4:+4452882 | Msa0144880:CDS |
| CTCCATGCCGATGAATTTAG+AGG | 0.351654 | 1_4:-4453259 | None:intergenic |
| AAAGATTTGGTTTGTGGTTG+AGG | 0.373807 | 1_4:-4451018 | None:intergenic |
| TAGTAATTACCTGAAAGATT+TGG | 0.385861 | 1_4:-4451031 | None:intergenic |
| TCGGCTTTATTGTCTCTCAT+AGG | 0.391703 | 1_4:+4452020 | Msa0144880:CDS |
| TGCTCCGGGTCCTGTCATTC+CGG | 0.393035 | 1_4:+4451806 | Msa0144880:CDS |
| CATGGAGGTCTACATGTAAC+TGG | 0.398646 | 1_4:+4453275 | Msa0144880:exon |
| AACACTCGCCTGGCGTCAAC+AGG | 0.404733 | 1_4:+4451993 | Msa0144880:CDS |
| GCTGGTAGTGGCGTTGAAAC+TGG | 0.406582 | 1_4:-4450984 | None:intergenic |
| AGAAATTTACAAACAATTGA+AGG | 0.413418 | 1_4:+4451211 | Msa0144880:intron |
| TTGGTTTGTGGTTGAGGTTG+TGG | 0.413733 | 1_4:-4451012 | None:intergenic |
| CGGCTTTATTGTCTCTCATA+GGG | 0.421365 | 1_4:+4452021 | Msa0144880:CDS |
| TTCTTCTTCCTCCTCCTCCA+TGG | 0.436021 | 1_4:+4450948 | Msa0144880:exon |
| TATGGAACTTGAAGATCAAA+TGG | 0.436027 | 1_4:+4452900 | Msa0144880:CDS |
| GAGGAAAAGACTAAAAGAAC+AGG | 0.439039 | 1_4:+4451884 | Msa0144880:CDS |
| TTTGCATTGGAATTTCGGTT+TGG | 0.453573 | 1_4:+4451854 | Msa0144880:CDS |
| CTTCTTTACTGTCCCTACCT+TGG | 0.456069 | 1_4:-4453020 | None:intergenic |
| TGCATACATGGAGGAATGTA+AGG | 0.466674 | 1_4:-4451298 | None:intergenic |
| GAAAGACTTGATGAAATGTA+AGG | 0.468795 | 1_4:+4453134 | Msa0144880:CDS |
| GGTCCTGTCATTCCGGCTGA+TGG | 0.469575 | 1_4:+4451813 | Msa0144880:CDS |
| CAACCTCGATCTGTGTCCAC+GGG | 0.471862 | 1_4:+4451951 | Msa0144880:CDS |
| GATACAGCTTCTTGCTGTAA+TGG | 0.478491 | 1_4:+4453066 | Msa0144880:CDS |
| GTTGTGGTTGTTGCTGGTAG+TGG | 0.484704 | 1_4:-4450996 | None:intergenic |
| TACCTGAAAGATTTGGTTTG+TGG | 0.491471 | 1_4:-4451024 | None:intergenic |
| CTTCCATCAGCCGGAATGAC+AGG | 0.496376 | 1_4:-4451816 | None:intergenic |
| CAAGGTAGGGACAGTAAAGA+AGG | 0.497061 | 1_4:+4453021 | Msa0144880:CDS |
| CCGAGTCTCCTGTTGACGCC+AGG | 0.501876 | 1_4:-4452001 | None:intergenic |
| AAGAAAAGCCATGGAGGAGG+AGG | 0.503001 | 1_4:-4450956 | None:intergenic |
| TGATCGTGAGTTACAGCAGC+AGG | 0.505797 | 1_4:+4452052 | Msa0144880:CDS |
| GCAACCTCGATCTGTGTCCA+CGG | 0.508164 | 1_4:+4451950 | Msa0144880:CDS |
| AATTTAGAGGATTGACATAG+AGG | 0.508849 | 1_4:-4453246 | None:intergenic |
| TCTCAAGTTTAACCTCCAAC+AGG | 0.509968 | 1_4:+4452990 | Msa0144880:CDS |
| ATGGTGGTGTTGATTTGCAT+TGG | 0.512381 | 1_4:+4451841 | Msa0144880:CDS |
| GTCGCTTGATAACACTCGCC+TGG | 0.520085 | 1_4:+4451983 | Msa0144880:CDS |
| CTCTCGAGGGAATGTGTGAA+TGG | 0.520596 | 1_4:-4450896 | None:intergenic |
| AAAACTTCGCGAGAAAGAAA+CGG | 0.522431 | 1_4:+4452852 | Msa0144880:CDS |
| GGACAGATTTCTCAAACTGC+AGG | 0.527660 | 1_4:+4452085 | Msa0144880:CDS |
| TACCTTGGAGATATGCCTGT+TGG | 0.532431 | 1_4:-4453005 | None:intergenic |
| ATCCTCTAAATTCATCGGCA+TGG | 0.537187 | 1_4:+4453257 | Msa0144880:CDS |
| AGGTCAGATGTCGCAGCAGA+TGG | 0.539736 | 1_4:+4451231 | Msa0144880:CDS |
| CTTGGAGATATGCCTGTTGG+AGG | 0.541227 | 1_4:-4453002 | None:intergenic |
| CAGAGGCAAAGATGCTTGCA+AGG | 0.548296 | 1_4:-4453192 | None:intergenic |
| AAAGGAAAGAGGGGTAAGTG+TGG | 0.548972 | 1_4:+4450837 | None:intergenic |
| TGTCAATCCTCTAAATTCAT+CGG | 0.564430 | 1_4:+4453252 | Msa0144880:CDS |
| GACTGATCTTGCAAATCAGT+AGG | 0.565941 | 1_4:-4451265 | None:intergenic |
| AGGGACAGTAAAGAAGGGTG+TGG | 0.567717 | 1_4:+4453027 | Msa0144880:CDS |
| CCACCATCACTTCCATCAGC+CGG | 0.574524 | 1_4:-4451825 | None:intergenic |
| CCTGGCGTCAACAGGAGACT+CGG | 0.578852 | 1_4:+4452001 | Msa0144880:CDS |
| AACAGGCATATCTCCAAGGT+AGG | 0.579800 | 1_4:+4453007 | Msa0144880:CDS |
| TAATTCTCAGATATCTTCTG+TGG | 0.580087 | 1_4:+4451920 | Msa0144880:CDS |
| TCAGCCGGAATGACAGGACC+CGG | 0.584748 | 1_4:-4451810 | None:intergenic |
| TTGAAGAAAAGCCATGGAGG+AGG | 0.587815 | 1_4:-4450959 | None:intergenic |
| CTGGTCTTGAAGAAAAGCCA+TGG | 0.589502 | 1_4:-4450965 | None:intergenic |
| GAACAGCTAAGTGTAGAAGC+AGG | 0.592248 | 1_4:+4452922 | Msa0144880:CDS |
| TCTAATAGGGTGAACAATTG+CGG | 0.596973 | 1_4:+4452758 | Msa0144880:intron |
| ACAGCAGCAGGATTTAGAGA+TGG | 0.603378 | 1_4:+4452064 | Msa0144880:CDS |
| TAAGTGTAGAAGCAGGCGCA+TGG | 0.605128 | 1_4:+4452929 | Msa0144880:CDS |
| TGTTTCAATCATTGAAGACA+AGG | 0.609124 | 1_4:+4452822 | Msa0144880:CDS |
| GAGAAGAGAGAAGTCTCTCG+AGG | 0.610894 | 1_4:-4450910 | None:intergenic |
| ACTGATCTTGCAAATCAGTA+GGG | 0.612381 | 1_4:-4451264 | None:intergenic |
| CTCCAACAGGCATATCTCCA+AGG | 0.619146 | 1_4:+4453003 | Msa0144880:CDS |
| AGAAGAGAGAAGTCTCTCGA+GGG | 0.619491 | 1_4:-4450909 | None:intergenic |
| TACTTTCACAATCTTTACAG+AGG | 0.619763 | 1_4:-4453209 | None:intergenic |
| ACAGGCATATCTCCAAGGTA+GGG | 0.623265 | 1_4:+4453008 | Msa0144880:CDS |
| CCGGCTGATGGAAGTGATGG+TGG | 0.631778 | 1_4:+4451825 | Msa0144880:CDS |
| AGGTAGAAAACATCAACAAG+AGG | 0.632388 | 1_4:+4452875 | Msa0144880:CDS |
| CAGAGTCAACGAAGTGACGA+TGG | 0.636128 | 1_4:+4453161 | Msa0144880:CDS |
| CTCTAAATTCATCGGCATGG+AGG | 0.640451 | 1_4:+4453260 | Msa0144880:CDS |
| ATTCCGGCTGATGGAAGTGA+TGG | 0.641493 | 1_4:+4451822 | Msa0144880:CDS |
| GGCTTTATTGTCTCTCATAG+GGG | 0.643215 | 1_4:+4452022 | Msa0144880:CDS |
| AAGGTAGGGACAGTAAAGAA+GGG | 0.646022 | 1_4:+4453022 | Msa0144880:CDS |
| AAACTAGTTACAATGTGTCA+CGG | 0.649683 | 1_4:-4453410 | None:intergenic |
| TGTCACGGTACTTGTTACAA+TGG | 0.651312 | 1_4:-4453395 | None:intergenic |
| AACCCCGTGGACACAGATCG+AGG | 0.671438 | 1_4:-4451954 | None:intergenic |
| ATTTCGGTTTGGAACCAGAG+AGG | 0.674088 | 1_4:+4451865 | Msa0144880:CDS |
| GTCTTGAAGAAAAGCCATGG+AGG | 0.676482 | 1_4:-4450962 | None:intergenic |
| AACCTCGATCTGTGTCCACG+GGG | 0.677662 | 1_4:+4451952 | Msa0144880:CDS |
| ACTATGATAAGCAACAACAC+AGG | 0.683625 | 1_4:-4453350 | None:intergenic |
| AGAAGGGTGTGGTGACAGCG+AGG | 0.695907 | 1_4:+4453038 | Msa0144880:CDS |
| AAGCGACAATCCTAACCCCG+TGG | 0.716176 | 1_4:-4451967 | None:intergenic |
| ACTTCGCGAGAAAGAAACGG+AGG | 0.727027 | 1_4:+4452855 | Msa0144880:CDS |
| GGAATGTGTGAATGGCGATG+AGG | 0.734844 | 1_4:-4450888 | None:intergenic |
| ATACATGGAGGAATGTAAGG+TGG | 0.751566 | 1_4:-4451295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAAAATATGAATTTTT+AGG | + | chr1_4:4451407-4451426 | Msa0144880:intron | 10.0% |
| !!! | TATTTTGTTTTTGATTTTTT+TGG | + | chr1_4:4451759-4451778 | Msa0144880:intron | 10.0% |
| !!! | ATTTTGTTTTTGATTTTTTT+GGG | + | chr1_4:4451760-4451779 | Msa0144880:intron | 10.0% |
| !! | TGTGTAAATATTAAATAATA+TGG | - | chr1_4:4452241-4452260 | None:intergenic | 10.0% |
| !!! | ATTATTTTGGAATATTAAGA+GGG | - | chr1_4:4451064-4451083 | None:intergenic | 15.0% |
| !!! | AATTATTTTGGAATATTAAG+AGG | - | chr1_4:4451065-4451084 | None:intergenic | 15.0% |
| !!! | CACTAATCTTAATTAATTTT+TGG | + | chr1_4:4451180-4451199 | Msa0144880:intron | 15.0% |
| !!! | ATATGAATTTTTAGGTTTTT+TGG | + | chr1_4:4451415-4451434 | Msa0144880:intron | 15.0% |
| !! | TTAATTCAAAATAACCAAAA+GGG | - | chr1_4:4451581-4451600 | None:intergenic | 15.0% |
| !! | TTTAATTCAAAATAACCAAA+AGG | - | chr1_4:4451582-4451601 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTGATTTTTTTG+GGG | + | chr1_4:4451761-4451780 | Msa0144880:intron | 15.0% |
| !!! | TAATTAATTTTCTCTCTAAT+AGG | + | chr1_4:4452744-4452763 | Msa0144880:intron | 15.0% |
| !!! | AATTAATTTTCTCTCTAATA+GGG | + | chr1_4:4452745-4452764 | Msa0144880:intron | 15.0% |
| !!! | TATTCAGTTTTAGTAAATTT+TGG | + | chr1_4:4453470-4453489 | Msa0144880:three_prime_UTR | 15.0% |
| !!! | TTATTTTGGAATATTAAGAG+GGG | - | chr1_4:4451063-4451082 | None:intergenic | 20.0% |
| !!! | GAAAGAAATTGGAATTATTT+TGG | - | chr1_4:4451077-4451096 | None:intergenic | 20.0% |
| !! | AGAGAGATTAAAAAAATGTT+TGG | - | chr1_4:4451114-4451133 | None:intergenic | 20.0% |
| !! | AGTGAGAAATAGATAATTAA+AGG | - | chr1_4:4451164-4451183 | None:intergenic | 20.0% |
| !! | AGAAATTTACAAACAATTGA+AGG | + | chr1_4:4451211-4451230 | Msa0144880:intron | 20.0% |
| !!! | GTCTATTTAGTATTTTCTTT+AGG | + | chr1_4:4451524-4451543 | Msa0144880:intron | 20.0% |
| !!! | ATTTTCTTTAGGTTTTTCTT+AGG | + | chr1_4:4451535-4451554 | Msa0144880:intron | 20.0% |
| !!! | TTTTCTTTAGGTTTTTCTTA+GGG | + | chr1_4:4451536-4451555 | Msa0144880:intron | 20.0% |
| !!! | TTTCTTTAGCATTTTATTGA+AGG | + | chr1_4:4451671-4451690 | Msa0144880:intron | 20.0% |
| !!! | TTCTTTAGCATTTTATTGAA+GGG | + | chr1_4:4451672-4451691 | Msa0144880:intron | 20.0% |
| !!! | GGGTTTTTAGATTTAATTTT+GGG | + | chr1_4:4451693-4451712 | Msa0144880:intron | 20.0% |
| !!! | TTTGTTTTTGATTTTTTTGG+GGG | + | chr1_4:4451762-4451781 | Msa0144880:intron | 20.0% |
| !! | AAATGTAAATTCATCATGAT+CGG | + | chr1_4:4452207-4452226 | Msa0144880:intron | 20.0% |
| !!! | TTTCATATTGGAATTTTCAT+TGG | - | chr1_4:4453118-4453137 | None:intergenic | 20.0% |
| !!! | AACTGGATATTTTATTTCAA+CGG | + | chr1_4:4453292-4453311 | Msa0144880:exon | 20.0% |
| ! | TAGTAATTACCTGAAAGATT+TGG | - | chr1_4:4451034-4451053 | None:intergenic | 25.0% |
| ! | AAAATGTTTGGTAAAGTGAA+AGG | - | chr1_4:4451102-4451121 | None:intergenic | 25.0% |
| ! | AAATCATTCTACAACACAAA+AGG | - | chr1_4:4451477-4451496 | None:intergenic | 25.0% |
| !!! | TTTCTTTAGGTTTTTCTTAG+GGG | + | chr1_4:4451537-4451556 | Msa0144880:intron | 25.0% |
| !! | TCTTTAGCATTTTATTGAAG+GGG | + | chr1_4:4451673-4451692 | Msa0144880:intron | 25.0% |
| !!! | GGGGTTTTTAGATTTAATTT+TGG | + | chr1_4:4451692-4451711 | Msa0144880:intron | 25.0% |
| !!! | ACTAAAAGAACAGGATTTTT+TGG | + | chr1_4:4451893-4451912 | Msa0144880:CDS | 25.0% |
| !!! | TTTAGCATCTTATTGGTTTA+TGG | + | chr1_4:4452132-4452151 | Msa0144880:intron | 25.0% |
| !!! | TTAGCATCTTATTGGTTTAT+GGG | + | chr1_4:4452133-4452152 | Msa0144880:intron | 25.0% |
| ! | TTCTTCATAGATGCTAAATT+AGG | - | chr1_4:4452689-4452708 | None:intergenic | 25.0% |
| !!! | AACAATTTTAGAGAAAGTTC+AGG | + | chr1_4:4452783-4452802 | Msa0144880:CDS | 25.0% |
| !! | AATCATGTTTTCGTTATATC+TGG | - | chr1_4:4452965-4452984 | None:intergenic | 25.0% |
| ! | TTTCATCAAGTCTTTCATAT+TGG | - | chr1_4:4453130-4453149 | None:intergenic | 25.0% |
| !!! | CAGTTTTAGTAAATTTTGGA+AGG | + | chr1_4:4453474-4453493 | Msa0144880:three_prime_UTR | 25.0% |
| AGTGAAAGGTAGAAAGAAAT+TGG | - | chr1_4:4451088-4451107 | None:intergenic | 30.0% | |
| AGATGAAGAATTTGCATACA+TGG | - | chr1_4:4451313-4451332 | None:intergenic | 30.0% | |
| TTGACTCAAAATGACCAAAA+GGG | - | chr1_4:4451447-4451466 | None:intergenic | 30.0% | |
| TTTGACTCAAAATGACCAAA+AGG | - | chr1_4:4451448-4451467 | None:intergenic | 30.0% | |
| TCACAACACATGAAAATGTA+GGG | - | chr1_4:4451738-4451757 | None:intergenic | 30.0% | |
| !! | GTTGATTTGCATTGGAATTT+CGG | + | chr1_4:4451849-4451868 | Msa0144880:CDS | 30.0% |
| TAATTCTCAGATATCTTCTG+TGG | + | chr1_4:4451920-4451939 | Msa0144880:CDS | 30.0% | |
| ! | TGTCTAGTTTAGCATCTTAT+TGG | + | chr1_4:4452125-4452144 | Msa0144880:intron | 30.0% |
| !! | TTTTTGTGCTTGTTAGACAA+TGG | + | chr1_4:4452389-4452408 | Msa0144880:intron | 30.0% |
| ! | TTTTCTCTATCTTTGGACAA+TGG | - | chr1_4:4452440-4452459 | None:intergenic | 30.0% |
| ! | CACAATCTTTTCTCTATCTT+TGG | - | chr1_4:4452447-4452466 | None:intergenic | 30.0% |
| ! | TGATTTGTGAAGTAATCGAT+TGG | - | chr1_4:4452551-4452570 | None:intergenic | 30.0% |
| TGTTTCAATCATTGAAGACA+AGG | + | chr1_4:4452822-4452841 | Msa0144880:CDS | 30.0% | |
| AAACATCAACAAGAGGAATA+TGG | + | chr1_4:4452882-4452901 | Msa0144880:CDS | 30.0% | |
| TATGGAACTTGAAGATCAAA+TGG | + | chr1_4:4452900-4452919 | Msa0144880:CDS | 30.0% | |
| GAAAGACTTGATGAAATGTA+AGG | + | chr1_4:4453134-4453153 | Msa0144880:CDS | 30.0% | |
| TACTTTCACAATCTTTACAG+AGG | - | chr1_4:4453212-4453231 | None:intergenic | 30.0% | |
| AATTTAGAGGATTGACATAG+AGG | - | chr1_4:4453249-4453268 | None:intergenic | 30.0% | |
| TGTCAATCCTCTAAATTCAT+CGG | + | chr1_4:4453252-4453271 | Msa0144880:CDS | 30.0% | |
| AAACTAGTTACAATGTGTCA+CGG | - | chr1_4:4453413-4453432 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr1_4:4450937-4450956 | None:intergenic | 35.0% | |
| !! | AAAGATTTGGTTTGTGGTTG+AGG | - | chr1_4:4451021-4451040 | None:intergenic | 35.0% |
| AACCACAAACCAAATCTTTC+AGG | + | chr1_4:4451022-4451041 | Msa0144880:CDS | 35.0% | |
| !! | TACCTGAAAGATTTGGTTTG+TGG | - | chr1_4:4451027-4451046 | None:intergenic | 35.0% |
| ACTGATCTTGCAAATCAGTA+GGG | - | chr1_4:4451267-4451286 | None:intergenic | 35.0% | |
| TGAAGAATTTGCATACATGG+AGG | - | chr1_4:4451310-4451329 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTAGCTACCCTTT+TGG | + | chr1_4:4451430-4451449 | Msa0144880:intron | 35.0% |
| ! | GTAGATATAAGCTACCCTTT+TGG | + | chr1_4:4451564-4451583 | Msa0144880:intron | 35.0% |
| GTCACAACACATGAAAATGT+AGG | - | chr1_4:4451739-4451758 | None:intergenic | 35.0% | |
| TTTGCATTGGAATTTCGGTT+TGG | + | chr1_4:4451854-4451873 | Msa0144880:CDS | 35.0% | |
| !! | TCTTTTAGTCTTTTCCTCTC+TGG | - | chr1_4:4451882-4451901 | None:intergenic | 35.0% |
| GAGGAAAAGACTAAAAGAAC+AGG | + | chr1_4:4451884-4451903 | Msa0144880:CDS | 35.0% | |
| AATTCATCATGATCGGTAAC+TGG | + | chr1_4:4452214-4452233 | Msa0144880:intron | 35.0% | |
| ! | GTATGCTGATGATTTGTAAG+TGG | + | chr1_4:4452274-4452293 | Msa0144880:intron | 35.0% |
| GGTTAGAATGCATCACAATA+CGG | - | chr1_4:4452645-4452664 | None:intergenic | 35.0% | |
| CTCTTACGAGTACAATATAC+AGG | - | chr1_4:4452666-4452685 | None:intergenic | 35.0% | |
| TCTAATAGGGTGAACAATTG+CGG | + | chr1_4:4452758-4452777 | Msa0144880:intron | 35.0% | |
| ! | TTTCTTTCTCGCGAAGTTTT+TGG | - | chr1_4:4452852-4452871 | None:intergenic | 35.0% |
| AAAACTTCGCGAGAAAGAAA+CGG | + | chr1_4:4452852-4452871 | Msa0144880:CDS | 35.0% | |
| AGGTAGAAAACATCAACAAG+AGG | + | chr1_4:4452875-4452894 | Msa0144880:CDS | 35.0% | |
| ACTATGATAAGCAACAACAC+AGG | - | chr1_4:4453353-4453372 | None:intergenic | 35.0% | |
| !! | TGTCCAAAAGCATAAGCTTT+TGG | + | chr1_4:4453525-4453544 | Msa0144880:three_prime_UTR | 35.0% |
| !! | GTCCAAAAGCATAAGCTTTT+GGG | + | chr1_4:4453526-4453545 | Msa0144880:three_prime_UTR | 35.0% |
| ! | ATCCCAAAAGCTTATGCTTT+TGG | - | chr1_4:4453531-4453550 | None:intergenic | 35.0% |
| GACTGATCTTGCAAATCAGT+AGG | - | chr1_4:4451268-4451287 | None:intergenic | 40.0% | |
| ATACATGGAGGAATGTAAGG+TGG | - | chr1_4:4451298-4451317 | None:intergenic | 40.0% | |
| TGCATACATGGAGGAATGTA+AGG | - | chr1_4:4451301-4451320 | None:intergenic | 40.0% | |
| !!! | TCATGTAGTTGGTTTTGCTC+CGG | + | chr1_4:4451791-4451810 | Msa0144880:CDS | 40.0% |
| !! | ATGGTGGTGTTGATTTGCAT+TGG | + | chr1_4:4451841-4451860 | Msa0144880:CDS | 40.0% |
| !! | TCGGCTTTATTGTCTCTCAT+AGG | + | chr1_4:4452020-4452039 | Msa0144880:CDS | 40.0% |
| !! | CGGCTTTATTGTCTCTCATA+GGG | + | chr1_4:4452021-4452040 | Msa0144880:CDS | 40.0% |
| !! | GGCTTTATTGTCTCTCATAG+GGG | + | chr1_4:4452022-4452041 | Msa0144880:CDS | 40.0% |
| TCTCAAGTTTAACCTCCAAC+AGG | + | chr1_4:4452990-4453009 | Msa0144880:CDS | 40.0% | |
| AAGGTAGGGACAGTAAAGAA+GGG | + | chr1_4:4453022-4453041 | Msa0144880:CDS | 40.0% | |
| ! | GATACAGCTTCTTGCTGTAA+TGG | + | chr1_4:4453066-4453085 | Msa0144880:CDS | 40.0% |
| ATCCTCTAAATTCATCGGCA+TGG | + | chr1_4:4453257-4453276 | Msa0144880:CDS | 40.0% | |
| ! | TGTCACGGTACTTGTTACAA+TGG | - | chr1_4:4453398-4453417 | None:intergenic | 40.0% |
| AGAAGAGAGAAGTCTCTCGA+GGG | - | chr1_4:4450912-4450931 | None:intergenic | 45.0% | |
| TTGAAGAAAAGCCATGGAGG+AGG | - | chr1_4:4450962-4450981 | None:intergenic | 45.0% | |
| GTCTTGAAGAAAAGCCATGG+AGG | - | chr1_4:4450965-4450984 | None:intergenic | 45.0% | |
| !! | CTGGTCTTGAAGAAAAGCCA+TGG | - | chr1_4:4450968-4450987 | None:intergenic | 45.0% |
| !! | TTGGTTTGTGGTTGAGGTTG+TGG | - | chr1_4:4451015-4451034 | None:intergenic | 45.0% |
| ! | GGGGGTTTAGTTCATGTAGT+TGG | + | chr1_4:4451780-4451799 | Msa0144880:intron | 45.0% |
| !!! | CATGTAGTTGGTTTTGCTCC+GGG | + | chr1_4:4451792-4451811 | Msa0144880:CDS | 45.0% |
| !! | ATTTCGGTTTGGAACCAGAG+AGG | + | chr1_4:4451865-4451884 | Msa0144880:CDS | 45.0% |
| ACAGCAGCAGGATTTAGAGA+TGG | + | chr1_4:4452064-4452083 | Msa0144880:CDS | 45.0% | |
| GGACAGATTTCTCAAACTGC+AGG | + | chr1_4:4452085-4452104 | Msa0144880:CDS | 45.0% | |
| !! | CTTTCTCGCGAAGTTTTTGG+AGG | - | chr1_4:4452849-4452868 | None:intergenic | 45.0% |
| GAACAGCTAAGTGTAGAAGC+AGG | + | chr1_4:4452922-4452941 | Msa0144880:CDS | 45.0% | |
| TACCTTGGAGATATGCCTGT+TGG | - | chr1_4:4453008-4453027 | None:intergenic | 45.0% | |
| AACAGGCATATCTCCAAGGT+AGG | + | chr1_4:4453007-4453026 | Msa0144880:CDS | 45.0% | |
| ACAGGCATATCTCCAAGGTA+GGG | + | chr1_4:4453008-4453027 | Msa0144880:CDS | 45.0% | |
| CTTCTTTACTGTCCCTACCT+TGG | - | chr1_4:4453023-4453042 | None:intergenic | 45.0% | |
| CAAGGTAGGGACAGTAAAGA+AGG | + | chr1_4:4453021-4453040 | Msa0144880:CDS | 45.0% | |
| CTCCATGCCGATGAATTTAG+AGG | - | chr1_4:4453262-4453281 | None:intergenic | 45.0% | |
| CTCTAAATTCATCGGCATGG+AGG | + | chr1_4:4453260-4453279 | Msa0144880:CDS | 45.0% | |
| CATGGAGGTCTACATGTAAC+TGG | + | chr1_4:4453275-4453294 | Msa0144880:exon | 45.0% | |
| GGAATGTGTGAATGGCGATG+AGG | - | chr1_4:4450891-4450910 | None:intergenic | 50.0% | |
| CTCTCGAGGGAATGTGTGAA+TGG | - | chr1_4:4450899-4450918 | None:intergenic | 50.0% | |
| GAGAAGAGAGAAGTCTCTCG+AGG | - | chr1_4:4450913-4450932 | None:intergenic | 50.0% | |
| TTCTTCTTCCTCCTCCTCCA+TGG | + | chr1_4:4450948-4450967 | Msa0144880:exon | 50.0% | |
| AAGAAAAGCCATGGAGGAGG+AGG | - | chr1_4:4450959-4450978 | None:intergenic | 50.0% | |
| GTTGTGGTTGTTGCTGGTAG+TGG | - | chr1_4:4450999-4451018 | None:intergenic | 50.0% | |
| GTTGAGGTTGTGGTTGTTGC+TGG | - | chr1_4:4451005-4451024 | None:intergenic | 50.0% | |
| ATTCCGGCTGATGGAAGTGA+TGG | + | chr1_4:4451822-4451841 | Msa0144880:CDS | 50.0% | |
| TGATCGTGAGTTACAGCAGC+AGG | + | chr1_4:4452052-4452071 | Msa0144880:CDS | 50.0% | |
| ! | CTCAAACTGCAGGTTAGCTC+AGG | + | chr1_4:4452095-4452114 | Msa0144880:intron | 50.0% |
| ACTTCGCGAGAAAGAAACGG+AGG | + | chr1_4:4452855-4452874 | Msa0144880:CDS | 50.0% | |
| TAAGTGTAGAAGCAGGCGCA+TGG | + | chr1_4:4452929-4452948 | Msa0144880:CDS | 50.0% | |
| CTTGGAGATATGCCTGTTGG+AGG | - | chr1_4:4453005-4453024 | None:intergenic | 50.0% | |
| CTCCAACAGGCATATCTCCA+AGG | + | chr1_4:4453003-4453022 | Msa0144880:CDS | 50.0% | |
| AGGGACAGTAAAGAAGGGTG+TGG | + | chr1_4:4453027-4453046 | Msa0144880:CDS | 50.0% | |
| CAGAGTCAACGAAGTGACGA+TGG | + | chr1_4:4453161-4453180 | Msa0144880:CDS | 50.0% | |
| CAGAGGCAAAGATGCTTGCA+AGG | - | chr1_4:4453195-4453214 | None:intergenic | 50.0% | |
| !! | GCTGGTAGTGGCGTTGAAAC+TGG | - | chr1_4:4450987-4451006 | None:intergenic | 55.0% |
| AGGTCAGATGTCGCAGCAGA+TGG | + | chr1_4:4451231-4451250 | Msa0144880:CDS | 55.0% | |
| CTTCCATCAGCCGGAATGAC+AGG | - | chr1_4:4451819-4451838 | None:intergenic | 55.0% | |
| CCACCATCACTTCCATCAGC+CGG | - | chr1_4:4451828-4451847 | None:intergenic | 55.0% | |
| GCAACCTCGATCTGTGTCCA+CGG | + | chr1_4:4451950-4451969 | Msa0144880:CDS | 55.0% | |
| CAACCTCGATCTGTGTCCAC+GGG | + | chr1_4:4451951-4451970 | Msa0144880:CDS | 55.0% | |
| AACCTCGATCTGTGTCCACG+GGG | + | chr1_4:4451952-4451971 | Msa0144880:CDS | 55.0% | |
| AAGCGACAATCCTAACCCCG+TGG | - | chr1_4:4451970-4451989 | None:intergenic | 55.0% | |
| ! | GTCGCTTGATAACACTCGCC+TGG | + | chr1_4:4451983-4452002 | Msa0144880:CDS | 55.0% |
| TGCTCCGGGTCCTGTCATTC+CGG | + | chr1_4:4451806-4451825 | Msa0144880:CDS | 60.0% | |
| TCAGCCGGAATGACAGGACC+CGG | - | chr1_4:4451813-4451832 | None:intergenic | 60.0% | |
| GGTCCTGTCATTCCGGCTGA+TGG | + | chr1_4:4451813-4451832 | Msa0144880:CDS | 60.0% | |
| CCGGCTGATGGAAGTGATGG+TGG | + | chr1_4:4451825-4451844 | Msa0144880:CDS | 60.0% | |
| AACCCCGTGGACACAGATCG+AGG | - | chr1_4:4451957-4451976 | None:intergenic | 60.0% | |
| CGATCTGTGTCCACGGGGTT+AGG | + | chr1_4:4451957-4451976 | Msa0144880:CDS | 60.0% | |
| AACACTCGCCTGGCGTCAAC+AGG | + | chr1_4:4451993-4452012 | Msa0144880:CDS | 60.0% | |
| CCTGGCGTCAACAGGAGACT+CGG | + | chr1_4:4452001-4452020 | Msa0144880:CDS | 60.0% | |
| ! | AGAAGGGTGTGGTGACAGCG+AGG | + | chr1_4:4453038-4453057 | Msa0144880:CDS | 60.0% |
| CCGAGTCTCCTGTTGACGCC+AGG | - | chr1_4:4452004-4452023 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4450848 | 4453569 | 4450848 | ID=Msa0144880;Name=Msa0144880 |
| chr1_4 | mRNA | 4450848 | 4453569 | 4450848 | ID=Msa0144880-mRNA-1;Parent=Msa0144880;Name=Msa0144880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=119|1|1|1|1|1|4|276|340 |
| chr1_4 | exon | 4450848 | 4451043 | 4450848 | ID=Msa0144880-mRNA-1:exon:1875;Parent=Msa0144880-mRNA-1 |
| chr1_4 | exon | 4451213 | 4451313 | 4451213 | ID=Msa0144880-mRNA-1:exon:1876;Parent=Msa0144880-mRNA-1 |
| chr1_4 | exon | 4451790 | 4452106 | 4451790 | ID=Msa0144880-mRNA-1:exon:1877;Parent=Msa0144880-mRNA-1 |
| chr1_4 | exon | 4452766 | 4453569 | 4452766 | ID=Msa0144880-mRNA-1:exon:1878;Parent=Msa0144880-mRNA-1 |
| chr1_4 | five_prime_UTR | 4450848 | 4450966 | 4450848 | ID=Msa0144880-mRNA-1:five_prime_utr;Parent=Msa0144880-mRNA-1 |
| chr1_4 | CDS | 4450967 | 4451043 | 4450967 | ID=Msa0144880-mRNA-1:cds;Parent=Msa0144880-mRNA-1 |
| chr1_4 | CDS | 4451213 | 4451313 | 4451213 | ID=Msa0144880-mRNA-1:cds;Parent=Msa0144880-mRNA-1 |
| chr1_4 | CDS | 4451790 | 4452106 | 4451790 | ID=Msa0144880-mRNA-1:cds;Parent=Msa0144880-mRNA-1 |
| chr1_4 | CDS | 4452766 | 4453293 | 4452766 | ID=Msa0144880-mRNA-1:cds;Parent=Msa0144880-mRNA-1 |
| chr1_4 | three_prime_UTR | 4453294 | 4453569 | 4453294 | ID=Msa0144880-mRNA-1:three_prime_utr;Parent=Msa0144880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
