Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053510 | sp|Q67XZ3|INV3_ARATH | 53.803 | 539 | 238 | 5 | 17 | 545 | 36 | 573 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053510 | G7I9W8 | 92.922 | 551 | 39 | 0 | 1 | 551 | 1 | 551 | 0.0 | 1083 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053510 | Msa0758520 | 0.801763 | 7.722481e-49 | -8.615850e-47 |
| Msa0053510 | Msa0758570 | 0.801934 | 7.121469e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053510 | MtrunA17_Chr1g0151301 | 92.922 | 551 | 39 | 0 | 1 | 551 | 1 | 551 | 0.0 | 1083 |
| Msa0053510 | MtrunA17_Chr1g0151321 | 81.081 | 555 | 94 | 6 | 1 | 548 | 1 | 551 | 0.0 | 912 |
| Msa0053510 | MtrunA17_Chr1g0151241 | 74.259 | 540 | 137 | 2 | 13 | 551 | 39 | 577 | 0.0 | 849 |
| Msa0053510 | MtrunA17_Chr2g0330151 | 52.239 | 536 | 249 | 4 | 14 | 545 | 42 | 574 | 0.0 | 580 |
| Msa0053510 | MtrunA17_Chr8g0342491 | 52.622 | 534 | 246 | 4 | 16 | 545 | 44 | 574 | 0.0 | 572 |
| Msa0053510 | MtrunA17_Chr7g0266641 | 48.794 | 539 | 272 | 3 | 9 | 545 | 37 | 573 | 0.0 | 547 |
| Msa0053510 | MtrunA17_Chr1g0178391 | 49.242 | 528 | 260 | 5 | 19 | 543 | 43 | 565 | 0.0 | 537 |
| Msa0053510 | MtrunA17_Chr4g0056501 | 44.068 | 531 | 280 | 8 | 20 | 543 | 112 | 632 | 3.64e-144 | 430 |
| Msa0053510 | MtrunA17_Chr3g0079291 | 43.536 | 526 | 287 | 5 | 20 | 543 | 104 | 621 | 5.09e-143 | 426 |
| Msa0053510 | MtrunA17_Chr1g0151281 | 94.359 | 195 | 11 | 0 | 49 | 243 | 76 | 270 | 3.54e-138 | 401 |
| Msa0053510 | MtrunA17_Chr5g0427521 | 51.507 | 365 | 165 | 6 | 37 | 389 | 11 | 375 | 2.99e-135 | 398 |
| Msa0053510 | MtrunA17_Chr1g0151271 | 82.547 | 212 | 37 | 0 | 340 | 551 | 1 | 212 | 2.47e-121 | 355 |
| Msa0053510 | MtrunA17_Chr5g0427511 | 47.059 | 170 | 88 | 2 | 378 | 545 | 20 | 189 | 1.05e-43 | 154 |
| Msa0053510 | MtrunA17_Chr1g0151251 | 60.811 | 74 | 28 | 1 | 251 | 324 | 34 | 106 | 3.67e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053510 | AT1G55120.1 | 53.803 | 539 | 238 | 5 | 17 | 545 | 36 | 573 | 0.0 | 595 |
| Msa0053510 | AT3G13790.1 | 54.647 | 538 | 232 | 6 | 17 | 545 | 49 | 583 | 0.0 | 594 |
| Msa0053510 | AT3G13790.2 | 54.647 | 538 | 229 | 7 | 17 | 545 | 49 | 580 | 0.0 | 590 |
| Msa0053510 | AT5G11920.1 | 52.908 | 533 | 243 | 6 | 20 | 547 | 17 | 546 | 0.0 | 574 |
| Msa0053510 | AT3G13784.4 | 52.110 | 545 | 249 | 7 | 7 | 543 | 31 | 571 | 0.0 | 570 |
| Msa0053510 | AT3G13784.2 | 51.927 | 545 | 250 | 7 | 7 | 543 | 31 | 571 | 0.0 | 569 |
| Msa0053510 | AT3G13784.1 | 51.927 | 545 | 247 | 8 | 7 | 543 | 31 | 568 | 0.0 | 565 |
| Msa0053510 | AT1G55120.3 | 52.682 | 522 | 236 | 5 | 34 | 545 | 38 | 558 | 0.0 | 562 |
| Msa0053510 | AT1G55120.2 | 52.692 | 520 | 235 | 5 | 36 | 545 | 16 | 534 | 0.0 | 560 |
| Msa0053510 | AT1G55120.4 | 52.794 | 519 | 234 | 5 | 37 | 545 | 16 | 533 | 0.0 | 560 |
| Msa0053510 | AT3G13790.5 | 53.876 | 516 | 226 | 6 | 39 | 545 | 1 | 513 | 0.0 | 558 |
| Msa0053510 | AT3G13790.4 | 53.876 | 516 | 226 | 6 | 39 | 545 | 1 | 513 | 0.0 | 558 |
| Msa0053510 | AT3G13790.3 | 53.876 | 516 | 226 | 6 | 39 | 545 | 1 | 513 | 0.0 | 558 |
| Msa0053510 | AT5G11920.3 | 52.918 | 514 | 234 | 6 | 39 | 547 | 1 | 511 | 0.0 | 549 |
| Msa0053510 | AT3G13784.3 | 51.262 | 515 | 240 | 6 | 37 | 543 | 7 | 518 | 0.0 | 534 |
| Msa0053510 | AT3G52600.1 | 47.890 | 545 | 268 | 7 | 12 | 542 | 39 | 581 | 1.17e-174 | 506 |
| Msa0053510 | AT2G36190.1 | 47.761 | 536 | 266 | 5 | 19 | 542 | 49 | 582 | 4.03e-172 | 500 |
| Msa0053510 | AT3G52600.3 | 47.977 | 519 | 255 | 6 | 37 | 542 | 11 | 527 | 4.46e-167 | 485 |
| Msa0053510 | AT3G52600.2 | 47.969 | 517 | 254 | 6 | 39 | 542 | 1 | 515 | 4.15e-166 | 482 |
| Msa0053510 | AT5G11920.2 | 54.731 | 391 | 170 | 5 | 20 | 405 | 17 | 405 | 4.17e-151 | 440 |
| Msa0053510 | AT1G12240.1 | 41.220 | 541 | 304 | 9 | 11 | 543 | 114 | 648 | 8.97e-135 | 407 |
| Msa0053510 | AT1G62660.1 | 40.111 | 541 | 309 | 10 | 11 | 543 | 99 | 632 | 4.18e-126 | 384 |
| Msa0053510 | AT1G62660.2 | 39.223 | 515 | 300 | 9 | 37 | 543 | 25 | 534 | 7.14e-118 | 359 |
| Msa0053510 | AT1G62660.4 | 37.446 | 462 | 278 | 8 | 90 | 543 | 8 | 466 | 7.22e-96 | 300 |
| Msa0053510 | AT1G62660.3 | 37.446 | 462 | 278 | 8 | 90 | 543 | 8 | 466 | 7.22e-96 | 300 |
Find 113 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCACGACTATTACTTTAT+TGG | 0.116104 | 1_2:+7928673 | Msa0053510:CDS |
| AGTCAATTCCAAGGAAATTT+TGG | 0.183368 | 1_2:+7929299 | Msa0053510:intron |
| CAAGAACTAGATTGGAAATA+TGG | 0.237271 | 1_2:-7926976 | None:intergenic |
| ATTCCTGATGTAAAATTTAC+AGG | 0.237883 | 1_2:+7928724 | Msa0053510:CDS |
| ATCTTTATCTGTAGCAAATA+AGG | 0.240361 | 1_2:-7930443 | None:intergenic |
| TATCAAATGATCTCATAAAT+TGG | 0.252820 | 1_2:+7928131 | Msa0053510:CDS |
| GGTTATATTGATAGAATAAA+TGG | 0.289550 | 1_2:-7928060 | None:intergenic |
| GTTCAGAATTGATACTGTTT+GGG | 0.304121 | 1_2:-7927056 | None:intergenic |
| AAAAGGATGGGCTGGTCTTC+AGG | 0.306686 | 1_2:+7928876 | Msa0053510:CDS |
| TGACCAAATGTTGCAGCATC+AGG | 0.310444 | 1_2:-7928082 | None:intergenic |
| AGTGAAGATGACATTGAAAA+AGG | 0.310795 | 1_2:+7928859 | Msa0053510:CDS |
| CTAAGAACAGGAGAATATTA+TGG | 0.318622 | 1_2:+7928812 | Msa0053510:CDS |
| GGATCAACTCTTGAAGTAAA+AGG | 0.319526 | 1_2:+7929421 | Msa0053510:CDS |
| GGAAAATGGAGGGTAATTAT+TGG | 0.320865 | 1_2:+7928433 | Msa0053510:CDS |
| CGGTCCATTATAGAGAGTTT+TGG | 0.323425 | 1_2:+7930382 | Msa0053510:CDS |
| ATCTCCAAAACTCTCTATAA+TGG | 0.332421 | 1_2:-7930386 | None:intergenic |
| GTAATTATTGGTGCGCAAAA+TGG | 0.348483 | 1_2:+7928445 | Msa0053510:CDS |
| AAAACCTGCTATGTTGTATA+CGG | 0.350314 | 1_2:+7928240 | Msa0053510:CDS |
| AAGGAATTGAGATTTGACTA+TGG | 0.364788 | 1_2:+7928754 | Msa0053510:CDS |
| GGCAAGGAAAGGATGGAAAA+TGG | 0.368723 | 1_2:+7928419 | Msa0053510:CDS |
| ATCTATCTGATCCTTACTTA+AGG | 0.376390 | 1_2:+7928311 | Msa0053510:CDS |
| TGTTCAGAATTGATACTGTT+TGG | 0.377203 | 1_2:-7927057 | None:intergenic |
| AACCCTGATGCTGCAACATT+TGG | 0.380638 | 1_2:+7928079 | Msa0053510:CDS |
| TTTCCTTGCCATGCAGTTGA+AGG | 0.383252 | 1_2:-7928406 | None:intergenic |
| AGCATGAAGCAAGCAGAGTT+TGG | 0.386544 | 1_2:+7930529 | Msa0053510:CDS |
| GCATCAAGAAAAGGCATGAT+AGG | 0.394897 | 1_2:+7929648 | Msa0053510:CDS |
| GTCAAAGATAGTTGCATATG+AGG | 0.396052 | 1_2:-7930225 | None:intergenic |
| ACTAGATTGGAAATATGGTT+TGG | 0.399507 | 1_2:-7926971 | None:intergenic |
| CATCGCCGACTCTATATATT+CGG | 0.402483 | 1_2:-7929731 | None:intergenic |
| AACTATTTCACTTAGAAGCT+TGG | 0.408959 | 1_2:+7930265 | Msa0053510:CDS |
| AACATTTATTATTTAAGATA+AGG | 0.412284 | 1_2:+7930596 | Msa0053510:three_prime_UTR |
| CACTCAGCACTTTGTAGATC+GGG | 0.418999 | 1_2:-7929576 | None:intergenic |
| CTTCAAGAGTTGATCCACTT+TGG | 0.419393 | 1_2:-7929414 | None:intergenic |
| AAAGGCATGATAGGACCATT+TGG | 0.425039 | 1_2:+7929657 | Msa0053510:CDS |
| TCATCAAGCCAAAATTTCCT+TGG | 0.431085 | 1_2:-7929307 | None:intergenic |
| ACAGGACCAATGTACTATAA+AGG | 0.433459 | 1_2:+7928031 | Msa0053510:CDS |
| TAAGAACAGGAGAATATTAT+GGG | 0.436477 | 1_2:+7928813 | Msa0053510:CDS |
| ACTTTACAGGTCTTCATTGC+GGG | 0.436951 | 1_2:+7930187 | Msa0053510:intron |
| AAAGTCAGCAAGAACTAGAT+TGG | 0.440499 | 1_2:-7926984 | None:intergenic |
| TGGAAAATATGTATCTGATC+AGG | 0.445267 | 1_2:+7928693 | Msa0053510:CDS |
| CTGAACAGCCATACAGAACT+TGG | 0.447033 | 1_2:+7927073 | Msa0053510:CDS |
| GACATAAACAGTTGTTGGTC+AGG | 0.447820 | 1_2:+7928193 | Msa0053510:CDS |
| TTCTTTGCAACAGATGGTAC+TGG | 0.449332 | 1_2:+7928535 | Msa0053510:CDS |
| GCAACATTTATTGATTGTCT+TGG | 0.450622 | 1_2:-7930817 | None:intergenic |
| TCTATCTGATCCTTACTTAA+GGG | 0.453904 | 1_2:+7928312 | Msa0053510:CDS |
| GTGTATATCAATAACACAAA+TGG | 0.454605 | 1_2:+7928586 | Msa0053510:CDS |
| AATATGGTTTGGTTTGATCA+AGG | 0.457419 | 1_2:-7926960 | None:intergenic |
| TCTTTATCTGTAGCAAATAA+GGG | 0.458589 | 1_2:-7930442 | None:intergenic |
| AAAAGGTATCACTGCATCTC+AGG | 0.460368 | 1_2:+7929438 | Msa0053510:CDS |
| TTCCTTGCCATGCAGTTGAA+GGG | 0.466764 | 1_2:-7928405 | None:intergenic |
| TAAGGATCAGATAGATTCTT+CGG | 0.468247 | 1_2:-7928304 | None:intergenic |
| GGCAATCAAATCAATATCAC+TGG | 0.474720 | 1_2:+7929382 | Msa0053510:CDS |
| TGATCCTTACTTAAGGGAAT+GGG | 0.475429 | 1_2:+7928318 | Msa0053510:CDS |
| TCTGTTGCAAAGAAAGGTAT+AGG | 0.475934 | 1_2:-7928526 | None:intergenic |
| AGCAAGTGAAGTTGATCCTC+AGG | 0.476578 | 1_2:+7929605 | Msa0053510:CDS |
| CTGATCCTTACTTAAGGGAA+TGG | 0.477383 | 1_2:+7928317 | Msa0053510:CDS |
| ATGTAAAATTTACAGGAACT+TGG | 0.482891 | 1_2:+7928731 | Msa0053510:CDS |
| TTTATGTCACCAGGTATAGT+TGG | 0.486080 | 1_2:-7928178 | None:intergenic |
| GTACCATCTGTTGCAAAGAA+AGG | 0.493447 | 1_2:-7928532 | None:intergenic |
| GAACAATATGCATCAAGAAA+AGG | 0.506692 | 1_2:+7929639 | Msa0053510:CDS |
| GGTGCGCAAAATGGCGATGA+AGG | 0.507859 | 1_2:+7928454 | Msa0053510:CDS |
| ATACCTTTCTTTGCAACAGA+TGG | 0.509617 | 1_2:+7928529 | Msa0053510:CDS |
| CTGGTGACATAAACAGTTGT+TGG | 0.512139 | 1_2:+7928188 | Msa0053510:CDS |
| ACACTCAGCACTTTGTAGAT+CGG | 0.519705 | 1_2:-7929577 | None:intergenic |
| TTACAATGTAGTCAATTCCA+AGG | 0.522368 | 1_2:+7929290 | Msa0053510:intron |
| GCTAAAGCTTGCAAACCAAA+TGG | 0.523341 | 1_2:-7929672 | None:intergenic |
| GTTCTGAGATAACCACACTT+TGG | 0.525542 | 1_2:-7930495 | None:intergenic |
| TTATCTCAGAACTGAATGCT+TGG | 0.526377 | 1_2:+7930506 | Msa0053510:CDS |
| ATATGGTTTGGTTTGATCAA+GGG | 0.527642 | 1_2:-7926959 | None:intergenic |
| TAATCTTGGCTCTATCATCA+TGG | 0.529744 | 1_2:+7927011 | Msa0053510:exon |
| CATCATGGAAAACATTAGAA+AGG | 0.533219 | 1_2:+7927026 | Msa0053510:exon |
| AAACCTGCTATGTTGTATAC+GGG | 0.534939 | 1_2:+7928241 | Msa0053510:CDS |
| ACAGGAGAATATTATGGGCA+TGG | 0.535196 | 1_2:+7928818 | Msa0053510:CDS |
| AATGTCATCTTCACTAGAGT+CGG | 0.542310 | 1_2:-7928851 | None:intergenic |
| ATTGAGATTTGACTATGGAA+AGG | 0.547063 | 1_2:+7928759 | Msa0053510:CDS |
| ACTGCATGGCAAGGAAAGGA+TGG | 0.547669 | 1_2:+7928412 | Msa0053510:CDS |
| CAACAACTGTTTATGTCACC+AGG | 0.549416 | 1_2:-7928187 | None:intergenic |
| AAATGGTACCAAGTTCTGTA+TGG | 0.557618 | 1_2:-7927081 | None:intergenic |
| ATATTCTCCTGTTCTTAGCA+TGG | 0.560528 | 1_2:-7928807 | None:intergenic |
| CAGGAGAATATTATGGGCAT+GGG | 0.561703 | 1_2:+7928819 | Msa0053510:CDS |
| CCACTAGGTGGAGTCATCAA+AGG | 0.562008 | 1_2:-7928358 | None:intergenic |
| AATTATTCTTTGCAAAAGTG+AGG | 0.562097 | 1_2:+7928480 | Msa0053510:CDS |
| GGCTCAGCCACTATACTCCC+AGG | 0.563694 | 1_2:+7928214 | Msa0053510:CDS |
| CAAAACTCTCTATAATGGAC+CGG | 0.564376 | 1_2:-7930381 | None:intergenic |
| TTTGTGTTATTGATATACAC+AGG | 0.571855 | 1_2:-7928583 | None:intergenic |
| GAGAATATTATGGGCATGGG+CGG | 0.571936 | 1_2:+7928822 | Msa0053510:CDS |
| TGATGATAAGTGACCAGACC+AGG | 0.572252 | 1_2:+7929766 | Msa0053510:CDS |
| TTCAACTGCATGGCAAGGAA+AGG | 0.576038 | 1_2:+7928408 | Msa0053510:CDS |
| AAAATTTACAGGAACTTGGA+AGG | 0.576790 | 1_2:+7928735 | Msa0053510:CDS |
| CACTTTACAGGTCTTCATTG+CGG | 0.577082 | 1_2:+7930186 | Msa0053510:intron |
| ATTCCCGTATACAACATAGC+AGG | 0.578896 | 1_2:-7928244 | None:intergenic |
| GACCCTTCAACTGCATGGCA+AGG | 0.579815 | 1_2:+7928403 | Msa0053510:CDS |
| ATATTGTAGTCCTCTCTGCT+TGG | 0.581622 | 1_2:-7929704 | None:intergenic |
| GTGGGAAGCGATTACTGCAA+TGG | 0.589720 | 1_2:+7929332 | Msa0053510:CDS |
| TAAACACCTTTATAGTACAT+TGG | 0.590232 | 1_2:-7928037 | None:intergenic |
| GGTGGTATATGCAGATTGAC+CGG | 0.592274 | 1_2:+7930362 | Msa0053510:intron |
| TTCAGAATTGATACTGTTTG+GGG | 0.601400 | 1_2:-7927055 | None:intergenic |
| GACCAAATGTTGCAGCATCA+GGG | 0.603384 | 1_2:-7928081 | None:intergenic |
| ATCAGATAGATTCTTCGGCA+TGG | 0.603732 | 1_2:-7928299 | None:intergenic |
| TCACCGACTTCAACTCCACT+AGG | 0.605450 | 1_2:-7928373 | None:intergenic |
| TCAGAGACCCTTCAACTGCA+TGG | 0.615717 | 1_2:+7928398 | Msa0053510:CDS |
| CCACCTAGTGGAGTTGAAGT+CGG | 0.629703 | 1_2:+7928370 | Msa0053510:CDS |
| ACTGGAGAAACACTCCAAAG+TGG | 0.631213 | 1_2:+7929400 | Msa0053510:CDS |
| TGTTCTTTAGAGAGTTCCTG+AGG | 0.633683 | 1_2:-7929621 | None:intergenic |
| AGGAAAGGATGGAAAATGGA+GGG | 0.634970 | 1_2:+7928423 | Msa0053510:CDS |
| AAGGAAAGGATGGAAAATGG+AGG | 0.637804 | 1_2:+7928422 | Msa0053510:CDS |
| GCTATTGTACCAACTATACC+TGG | 0.641138 | 1_2:+7928169 | Msa0053510:CDS |
| CCTTTGATGACTCCACCTAG+TGG | 0.641854 | 1_2:+7928358 | Msa0053510:CDS |
| CAATGATGGAAGCCAAAGTG+TGG | 0.652023 | 1_2:+7930483 | Msa0053510:CDS |
| TCTTTCCGAATATATAGAGT+CGG | 0.652476 | 1_2:+7929726 | Msa0053510:CDS |
| AAATGGAGTTGATACGACAA+TGG | 0.658643 | 1_2:+7928603 | Msa0053510:CDS |
| CCGACTTCAACTCCACTAGG+TGG | 0.683686 | 1_2:-7928370 | None:intergenic |
| CATCAAAAGACCAAGCAGAG+AGG | 0.711358 | 1_2:+7929694 | Msa0053510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGAAAATATTTTTTACA+AGG | - | chr1_2:7927832-7927851 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTAAACTTTTCA+AGG | + | chr1_2:7929527-7929546 | Msa0053510:intron | 10.0% |
| !!! | AACATTTATTATTTAAGATA+AGG | + | chr1_2:7930596-7930615 | Msa0053510:three_prime_UTR | 10.0% |
| !!! | TAATTTTATTGTGTTAATTT+TGG | + | chr1_2:7930669-7930688 | Msa0053510:three_prime_UTR | 10.0% |
| !!! | GTTATTACAATATATTTTTC+AGG | - | chr1_2:7927597-7927616 | None:intergenic | 15.0% |
| !! | AAATATATTGTAATAACTAC+TGG | + | chr1_2:7927600-7927619 | Msa0053510:intron | 15.0% |
| !! | TTAAAATGAATACATACTTT+AGG | - | chr1_2:7927862-7927881 | None:intergenic | 15.0% |
| !!! | TATTATTTTAGTTTCATGAT+AGG | + | chr1_2:7928899-7928918 | Msa0053510:intron | 15.0% |
| !!! | ATTTTGTTATAATTTGCTTT+AGG | + | chr1_2:7928927-7928946 | Msa0053510:intron | 15.0% |
| !!! | TTTTGTTATAATTTGCTTTA+GGG | + | chr1_2:7928928-7928947 | Msa0053510:intron | 15.0% |
| !! | TAATATAGCTAAAAAGAATT+TGG | + | chr1_2:7930563-7930582 | Msa0053510:exon | 15.0% |
| !! | ATACATATGTAGTATATACT+AGG | - | chr1_2:7927339-7927358 | None:intergenic | 20.0% |
| !! | AGTATATACTACATATGTAT+AGG | + | chr1_2:7927339-7927358 | Msa0053510:intron | 20.0% |
| !! | GTATATACTACATATGTATA+GGG | + | chr1_2:7927340-7927359 | Msa0053510:intron | 20.0% |
| !! | TATATACTACATATGTATAG+GGG | + | chr1_2:7927341-7927360 | Msa0053510:intron | 20.0% |
| !! | CAAATTCTTCAAATTTCATA+TGG | - | chr1_2:7927388-7927407 | None:intergenic | 20.0% |
| !! | ATGAAATTTGAAGAATTTGA+TGG | + | chr1_2:7927389-7927408 | Msa0053510:intron | 20.0% |
| !! | TGAAATTTGAAGAATTTGAT+GGG | + | chr1_2:7927390-7927409 | Msa0053510:intron | 20.0% |
| !!! | TCTAAAATAGTTTGAAAATG+AGG | + | chr1_2:7927749-7927768 | Msa0053510:intron | 20.0% |
| !!! | AATATTTTTTACAAGGTGAA+CGG | - | chr1_2:7927825-7927844 | None:intergenic | 20.0% |
| !! | GGTTATATTGATAGAATAAA+TGG | - | chr1_2:7928063-7928082 | None:intergenic | 20.0% |
| !! | TATCAAATGATCTCATAAAT+TGG | + | chr1_2:7928131-7928150 | Msa0053510:CDS | 20.0% |
| !!! | ATTTACCGACATTTTTAAAA+AGG | + | chr1_2:7928951-7928970 | Msa0053510:intron | 20.0% |
| !! | CAAGGTTTAAAAAAATGTTT+GGG | + | chr1_2:7929045-7929064 | Msa0053510:intron | 20.0% |
| !! | TAGACATAAAAATCCTTTAT+TGG | - | chr1_2:7929084-7929103 | None:intergenic | 20.0% |
| !! | GTTATAATATATCTGTGTAA+CGG | - | chr1_2:7929223-7929242 | None:intergenic | 20.0% |
| !! | ATGTGACAATTAAAAAGTAA+CGG | - | chr1_2:7930779-7930798 | None:intergenic | 20.0% |
| !!! | GTTTTGATGTTTTCACTAAA+TGG | + | chr1_2:7926898-7926917 | Msa0053510:five_prime_UTR | 25.0% |
| !!! | ACCATTCATCCAATTTTTTA+GGG | - | chr1_2:7927112-7927131 | None:intergenic | 25.0% |
| !!! | TACCATTCATCCAATTTTTT+AGG | - | chr1_2:7927113-7927132 | None:intergenic | 25.0% |
| !!! | AAGATGATGGTTTTCAATTT+TGG | - | chr1_2:7927231-7927250 | None:intergenic | 25.0% |
| !!! | TATATTTTTCAGGATCTGTT+TGG | - | chr1_2:7927587-7927606 | None:intergenic | 25.0% |
| !!! | ATATTTTTTACAAGGTGAAC+GGG | - | chr1_2:7927824-7927843 | None:intergenic | 25.0% |
| ! | AAATAGTTGGATTATCTAAC+AGG | - | chr1_2:7927960-7927979 | None:intergenic | 25.0% |
| ! | TAAACACCTTTATAGTACAT+TGG | - | chr1_2:7928040-7928059 | None:intergenic | 25.0% |
| ! | TTGGTCATGAAAAAATGATA+TGG | + | chr1_2:7928098-7928117 | Msa0053510:CDS | 25.0% |
| ! | TGGTCATGAAAAAATGATAT+GGG | + | chr1_2:7928099-7928118 | Msa0053510:CDS | 25.0% |
| ! | AATTATTCTTTGCAAAAGTG+AGG | + | chr1_2:7928480-7928499 | Msa0053510:CDS | 25.0% |
| ! | ATATACACAGGAAAAAAATC+TGG | - | chr1_2:7928574-7928593 | None:intergenic | 25.0% |
| !! | TTTGTGTTATTGATATACAC+AGG | - | chr1_2:7928586-7928605 | None:intergenic | 25.0% |
| ! | GTGTATATCAATAACACAAA+TGG | + | chr1_2:7928586-7928605 | Msa0053510:CDS | 25.0% |
| ! | ATTCCTGATGTAAAATTTAC+AGG | + | chr1_2:7928724-7928743 | Msa0053510:CDS | 25.0% |
| ! | ATGTAAAATTTACAGGAACT+TGG | + | chr1_2:7928731-7928750 | Msa0053510:CDS | 25.0% |
| ! | TAAGAACAGGAGAATATTAT+GGG | + | chr1_2:7928813-7928832 | Msa0053510:CDS | 25.0% |
| !!! | GCATACCTTTTTAAAAATGT+CGG | - | chr1_2:7928959-7928978 | None:intergenic | 25.0% |
| ! | GCGATACTAAAGATTAAAAA+AGG | + | chr1_2:7928995-7929014 | Msa0053510:intron | 25.0% |
| !!! | CCAAACATTTTTTTAAACCT+TGG | - | chr1_2:7929047-7929066 | None:intergenic | 25.0% |
| ! | CCAAGGTTTAAAAAAATGTT+TGG | + | chr1_2:7929044-7929063 | Msa0053510:intron | 25.0% |
| ! | CTATTCGCAATATTAAGAAT+TGG | + | chr1_2:7929160-7929179 | Msa0053510:intron | 25.0% |
| ! | GTATAGTGTAAAAAATAACC+TGG | - | chr1_2:7929787-7929806 | None:intergenic | 25.0% |
| !!! | CACTATACGAACTTATTTTA+CGG | + | chr1_2:7929799-7929818 | Msa0053510:intron | 25.0% |
| !! | AATAACAGAAAAGCATAGAA+AGG | + | chr1_2:7929922-7929941 | Msa0053510:intron | 25.0% |
| !! | ATAACAGAAAAGCATAGAAA+GGG | + | chr1_2:7929923-7929942 | Msa0053510:intron | 25.0% |
| !!! | TAGAACGTTGATTTTATCAA+AGG | + | chr1_2:7929974-7929993 | Msa0053510:intron | 25.0% |
| !!! | AGAACGTTGATTTTATCAAA+GGG | + | chr1_2:7929975-7929994 | Msa0053510:intron | 25.0% |
| ! | TGTAAAAGTTCGATAAAAGT+TGG | - | chr1_2:7930039-7930058 | None:intergenic | 25.0% |
| !!! | TTTTACATTCTCTTGTTTGA+GGG | + | chr1_2:7930052-7930071 | Msa0053510:intron | 25.0% |
| ! | GATTATATCTCATCAAATGA+TGG | + | chr1_2:7930133-7930152 | Msa0053510:intron | 25.0% |
| ! | TTAAATTGTGTACACTTTAC+AGG | + | chr1_2:7930174-7930193 | Msa0053510:intron | 25.0% |
| !!! | AGTGAAATAGTTTTGAGATT+GGG | - | chr1_2:7930257-7930276 | None:intergenic | 25.0% |
| !!! | AAGTGAAATAGTTTTGAGAT+TGG | - | chr1_2:7930258-7930277 | None:intergenic | 25.0% |
| ! | TTCCTAGTTTGATACATATA+AGG | + | chr1_2:7930338-7930357 | Msa0053510:intron | 25.0% |
| ! | TCTTTATCTGTAGCAAATAA+GGG | - | chr1_2:7930445-7930464 | None:intergenic | 25.0% |
| ! | ATCTTTATCTGTAGCAAATA+AGG | - | chr1_2:7930446-7930465 | None:intergenic | 25.0% |
| !! | CATCTTTTTGTATTCAATGA+TGG | + | chr1_2:7930469-7930488 | Msa0053510:CDS | 25.0% |
| !! | ATATGGTTTGGTTTGATCAA+GGG | - | chr1_2:7926962-7926981 | None:intergenic | 30.0% |
| !! | AATATGGTTTGGTTTGATCA+AGG | - | chr1_2:7926963-7926982 | None:intergenic | 30.0% |
| ACTAGATTGGAAATATGGTT+TGG | - | chr1_2:7926974-7926993 | None:intergenic | 30.0% | |
| CAAGAACTAGATTGGAAATA+TGG | - | chr1_2:7926979-7926998 | None:intergenic | 30.0% | |
| !!! | TGCTGACTTTTCAATAATCT+TGG | + | chr1_2:7926997-7927016 | Msa0053510:five_prime_UTR | 30.0% |
| CATCATGGAAAACATTAGAA+AGG | + | chr1_2:7927026-7927045 | Msa0053510:exon | 30.0% | |
| TTCAGAATTGATACTGTTTG+GGG | - | chr1_2:7927058-7927077 | None:intergenic | 30.0% | |
| GTTCAGAATTGATACTGTTT+GGG | - | chr1_2:7927059-7927078 | None:intergenic | 30.0% | |
| TGTTCAGAATTGATACTGTT+TGG | - | chr1_2:7927060-7927079 | None:intergenic | 30.0% | |
| !!! | AATTTTTTAGGGGCTGAAAA+TGG | - | chr1_2:7927101-7927120 | None:intergenic | 30.0% |
| ! | ATTTTCAGCCCCTAAAAAAT+TGG | + | chr1_2:7927100-7927119 | Msa0053510:CDS | 30.0% |
| !!! | CCATTCATCCAATTTTTTAG+GGG | - | chr1_2:7927111-7927130 | None:intergenic | 30.0% |
| TGCAAAAAGTAAATGGACAA+TGG | - | chr1_2:7927153-7927172 | None:intergenic | 30.0% | |
| ACACATGTGCAAAAAGTAAA+TGG | - | chr1_2:7927160-7927179 | None:intergenic | 30.0% | |
| AATTTGAAGAATTTGATGGG+AGG | + | chr1_2:7927393-7927412 | Msa0053510:intron | 30.0% | |
| !!! | ATGGGAGGTATTTTTAATTG+AGG | + | chr1_2:7927408-7927427 | Msa0053510:intron | 30.0% |
| !!! | TGGGAGGTATTTTTAATTGA+GGG | + | chr1_2:7927409-7927428 | Msa0053510:intron | 30.0% |
| TGTTACTATGTCATGTTAGT+AGG | - | chr1_2:7927793-7927812 | None:intergenic | 30.0% | |
| GAGCACATTAAAGAAATAGT+TGG | - | chr1_2:7927973-7927992 | None:intergenic | 30.0% | |
| GGTCATGAAAAAATGATATG+GGG | + | chr1_2:7928100-7928119 | Msa0053510:CDS | 30.0% | |
| AAAACCTGCTATGTTGTATA+CGG | + | chr1_2:7928240-7928259 | Msa0053510:CDS | 30.0% | |
| TAAGGATCAGATAGATTCTT+CGG | - | chr1_2:7928307-7928326 | None:intergenic | 30.0% | |
| ATCTATCTGATCCTTACTTA+AGG | + | chr1_2:7928311-7928330 | Msa0053510:CDS | 30.0% | |
| TCTATCTGATCCTTACTTAA+GGG | + | chr1_2:7928312-7928331 | Msa0053510:CDS | 30.0% | |
| ! | AAAGTGAGGATTTTGTTAAG+TGG | + | chr1_2:7928494-7928513 | Msa0053510:CDS | 30.0% |
| ! | GGATTTTGTTAAGTGGATAT+TGG | + | chr1_2:7928501-7928520 | Msa0053510:CDS | 30.0% |
| TGGAAAATATGTATCTGATC+AGG | + | chr1_2:7928693-7928712 | Msa0053510:CDS | 30.0% | |
| ! | GTTCCTGTAAATTTTACATC+AGG | - | chr1_2:7928730-7928749 | None:intergenic | 30.0% |
| AAAATTTACAGGAACTTGGA+AGG | + | chr1_2:7928735-7928754 | Msa0053510:CDS | 30.0% | |
| AAGGAATTGAGATTTGACTA+TGG | + | chr1_2:7928754-7928773 | Msa0053510:CDS | 30.0% | |
| ATTGAGATTTGACTATGGAA+AGG | + | chr1_2:7928759-7928778 | Msa0053510:CDS | 30.0% | |
| CTAAGAACAGGAGAATATTA+TGG | + | chr1_2:7928812-7928831 | Msa0053510:CDS | 30.0% | |
| AGTGAAGATGACATTGAAAA+AGG | + | chr1_2:7928859-7928878 | Msa0053510:CDS | 30.0% | |
| AAGATGACATTGAAAAAGGA+TGG | + | chr1_2:7928863-7928882 | Msa0053510:CDS | 30.0% | |
| AGATGACATTGAAAAAGGAT+GGG | + | chr1_2:7928864-7928883 | Msa0053510:CDS | 30.0% | |
| ATCTCGATTTAGACCAATAA+AGG | + | chr1_2:7929068-7929087 | Msa0053510:intron | 30.0% | |
| TTACAATGTAGTCAATTCCA+AGG | + | chr1_2:7929290-7929309 | Msa0053510:intron | 30.0% | |
| ! | AGTCAATTCCAAGGAAATTT+TGG | + | chr1_2:7929299-7929318 | Msa0053510:intron | 30.0% |
| !!! | AAATTTTGGCTTGATGAAAG+TGG | + | chr1_2:7929313-7929332 | Msa0053510:CDS | 30.0% |
| !!! | AATTTTGGCTTGATGAAAGT+GGG | + | chr1_2:7929314-7929333 | Msa0053510:CDS | 30.0% |
| ! | AGTTTTTCTAACTCTTCGAT+TGG | - | chr1_2:7929358-7929377 | None:intergenic | 30.0% |
| GAACAATATGCATCAAGAAA+AGG | + | chr1_2:7929639-7929658 | Msa0053510:CDS | 30.0% | |
| TCTTTCCGAATATATAGAGT+CGG | + | chr1_2:7929726-7929745 | Msa0053510:CDS | 30.0% | |
| GTCGATATTACAATTCTAGA+TGG | + | chr1_2:7929891-7929910 | Msa0053510:intron | 30.0% | |
| !! | CTTTTACATTCTCTTGTTTG+AGG | + | chr1_2:7930051-7930070 | Msa0053510:intron | 30.0% |
| ! | TTTACATTCTCTTGTTTGAG+GGG | + | chr1_2:7930053-7930072 | Msa0053510:intron | 30.0% |
| ACATCTATAATAGTCGATCT+CGG | + | chr1_2:7930090-7930109 | Msa0053510:intron | 30.0% | |
| ! | ATCATTCAAGCTTTATCTGA+TGG | - | chr1_2:7930116-7930135 | None:intergenic | 30.0% |
| AACTATTTCACTTAGAAGCT+TGG | + | chr1_2:7930265-7930284 | Msa0053510:CDS | 30.0% | |
| CACCTTATATGTATCAAACT+AGG | - | chr1_2:7930343-7930362 | None:intergenic | 30.0% | |
| CTAGTTTGATACATATAAGG+TGG | + | chr1_2:7930341-7930360 | Msa0053510:intron | 30.0% | |
| ATCTCCAAAACTCTCTATAA+TGG | - | chr1_2:7930389-7930408 | None:intergenic | 30.0% | |
| !!! | ATTATAGAGAGTTTTGGAGA+TGG | + | chr1_2:7930388-7930407 | Msa0053510:CDS | 30.0% |
| TGACAATTAAAAAGTAACGG+AGG | - | chr1_2:7930776-7930795 | None:intergenic | 30.0% | |
| AAAGTCAGCAAGAACTAGAT+TGG | - | chr1_2:7926987-7927006 | None:intergenic | 35.0% | |
| !! | TAATCTTGGCTCTATCATCA+TGG | + | chr1_2:7927011-7927030 | Msa0053510:exon | 35.0% |
| AAATGGTACCAAGTTCTGTA+TGG | - | chr1_2:7927084-7927103 | None:intergenic | 35.0% | |
| CCCCTAAAAAATTGGATGAA+TGG | + | chr1_2:7927108-7927127 | Msa0053510:CDS | 35.0% | |
| AGAGTATGAAGCATACCATT+AGG | - | chr1_2:7927266-7927285 | None:intergenic | 35.0% | |
| GTAGTATATACTAGGATGTG+AGG | - | chr1_2:7927331-7927350 | None:intergenic | 35.0% | |
| !!! | GGGAGGTATTTTTAATTGAG+GGG | + | chr1_2:7927410-7927429 | Msa0053510:intron | 35.0% |
| !!! | GGAGGTATTTTTAATTGAGG+GGG | + | chr1_2:7927411-7927430 | Msa0053510:intron | 35.0% |
| AACGACTTAAGTTATGCTTG+GGG | - | chr1_2:7927718-7927737 | None:intergenic | 35.0% | |
| CAACGACTTAAGTTATGCTT+GGG | - | chr1_2:7927719-7927738 | None:intergenic | 35.0% | |
| TCAACGACTTAAGTTATGCT+TGG | - | chr1_2:7927720-7927739 | None:intergenic | 35.0% | |
| ! | TGAGGTCTCATTTTCAAACA+CGG | + | chr1_2:7927767-7927786 | Msa0053510:intron | 35.0% |
| TTGAAACCAGAACACACATT+AGG | + | chr1_2:7927908-7927927 | Msa0053510:intron | 35.0% | |
| CTATAATGTCACCCTTCAAT+TGG | + | chr1_2:7927933-7927952 | Msa0053510:intron | 35.0% | |
| ATCTAACAGGTCCAATTGAA+GGG | - | chr1_2:7927947-7927966 | None:intergenic | 35.0% | |
| TATCTAACAGGTCCAATTGA+AGG | - | chr1_2:7927948-7927967 | None:intergenic | 35.0% | |
| ACAGGACCAATGTACTATAA+AGG | + | chr1_2:7928031-7928050 | Msa0053510:CDS | 35.0% | |
| TTTATGTCACCAGGTATAGT+TGG | - | chr1_2:7928181-7928200 | None:intergenic | 35.0% | |
| AAACCTGCTATGTTGTATAC+GGG | + | chr1_2:7928241-7928260 | Msa0053510:CDS | 35.0% | |
| ! | GCATGGCTAAATTTTGAACT+TGG | - | chr1_2:7928285-7928304 | None:intergenic | 35.0% |
| TGATCCTTACTTAAGGGAAT+GGG | + | chr1_2:7928318-7928337 | Msa0053510:CDS | 35.0% | |
| ! | TTTTCCCATTCCCTTAAGTA+AGG | - | chr1_2:7928325-7928344 | None:intergenic | 35.0% |
| ! | GAGTCATCAAAGGATTTTGA+GGG | - | chr1_2:7928351-7928370 | None:intergenic | 35.0% |
| GGAAAATGGAGGGTAATTAT+TGG | + | chr1_2:7928433-7928452 | Msa0053510:CDS | 35.0% | |
| GTAATTATTGGTGCGCAAAA+TGG | + | chr1_2:7928445-7928464 | Msa0053510:CDS | 35.0% | |
| ! | TCTGTTGCAAAGAAAGGTAT+AGG | - | chr1_2:7928529-7928548 | None:intergenic | 35.0% |
| ATACCTTTCTTTGCAACAGA+TGG | + | chr1_2:7928529-7928548 | Msa0053510:CDS | 35.0% | |
| !! | AAATGGAGTTGATACGACAA+TGG | + | chr1_2:7928603-7928622 | Msa0053510:CDS | 35.0% |
| CGTCACGACTATTACTTTAT+TGG | + | chr1_2:7928673-7928692 | Msa0053510:CDS | 35.0% | |
| ! | TTTTTGACCATGCTAAGAAC+AGG | + | chr1_2:7928800-7928819 | Msa0053510:CDS | 35.0% |
| ATATTCTCCTGTTCTTAGCA+TGG | - | chr1_2:7928810-7928829 | None:intergenic | 35.0% | |
| AATGTCATCTTCACTAGAGT+CGG | - | chr1_2:7928854-7928873 | None:intergenic | 35.0% | |
| ! | AAAGGTATGCAATCTTGATC+TGG | + | chr1_2:7928969-7928988 | Msa0053510:intron | 35.0% |
| CGAATAGCTGTAATCAAATG+CGG | - | chr1_2:7929147-7929166 | None:intergenic | 35.0% | |
| TCATCAAGCCAAAATTTCCT+TGG | - | chr1_2:7929310-7929329 | None:intergenic | 35.0% | |
| GAAGAGTTAGAAAAACTTCG+TGG | + | chr1_2:7929361-7929380 | Msa0053510:CDS | 35.0% | |
| GGCAATCAAATCAATATCAC+TGG | + | chr1_2:7929382-7929401 | Msa0053510:CDS | 35.0% | |
| GGATCAACTCTTGAAGTAAA+AGG | + | chr1_2:7929421-7929440 | Msa0053510:CDS | 35.0% | |
| !! | TAAACTTTTCAAGGCTGATG+TGG | + | chr1_2:7929536-7929555 | Msa0053510:intron | 35.0% |
| GTGTAAAAAATAACCTGGTC+TGG | - | chr1_2:7929782-7929801 | None:intergenic | 35.0% | |
| GAATTGTAATATCGACAACG+TGG | - | chr1_2:7929887-7929906 | None:intergenic | 35.0% | |
| ! | TCGATAAAAGTTGGTTGTTC+TGG | - | chr1_2:7930030-7930049 | None:intergenic | 35.0% |
| GTCAAAGATAGTTGCATATG+AGG | - | chr1_2:7930228-7930247 | None:intergenic | 35.0% | |
| GTTTGATACATATAAGGTGG+TGG | + | chr1_2:7930344-7930363 | Msa0053510:intron | 35.0% | |
| !! | CAAAACTCTCTATAATGGAC+CGG | - | chr1_2:7930384-7930403 | None:intergenic | 35.0% |
| TTATCTCAGAACTGAATGCT+TGG | + | chr1_2:7930506-7930525 | Msa0053510:CDS | 35.0% | |
| GATCTGCATGATGAAGATGA+TGG | - | chr1_2:7927244-7927263 | None:intergenic | 40.0% | |
| CTTCATCATGCAGATCCTAA+TGG | + | chr1_2:7927248-7927267 | Msa0053510:intron | 40.0% | |
| ATAGTGCCTAATGTGTGTTC+TGG | - | chr1_2:7927917-7927936 | None:intergenic | 40.0% | |
| !!! | TCCTCATTCCCTCTCTTTTT+TGG | + | chr1_2:7928003-7928022 | Msa0053510:intron | 40.0% |
| TGTCACAGCCAAAAAAGAGA+GGG | - | chr1_2:7928014-7928033 | None:intergenic | 40.0% | |
| GCTATTGTACCAACTATACC+TGG | + | chr1_2:7928169-7928188 | Msa0053510:CDS | 40.0% | |
| CAACAACTGTTTATGTCACC+AGG | - | chr1_2:7928190-7928209 | None:intergenic | 40.0% | |
| CTGGTGACATAAACAGTTGT+TGG | + | chr1_2:7928188-7928207 | Msa0053510:CDS | 40.0% | |
| GACATAAACAGTTGTTGGTC+AGG | + | chr1_2:7928193-7928212 | Msa0053510:CDS | 40.0% | |
| !! | TTTTTCACCTGGGAGTATAG+TGG | - | chr1_2:7928224-7928243 | None:intergenic | 40.0% |
| ! | ACATAGCAGGTTTTTCACCT+GGG | - | chr1_2:7928234-7928253 | None:intergenic | 40.0% |
| ! | AACATAGCAGGTTTTTCACC+TGG | - | chr1_2:7928235-7928254 | None:intergenic | 40.0% |
| ATTCCCGTATACAACATAGC+AGG | - | chr1_2:7928247-7928266 | None:intergenic | 40.0% | |
| ATCAGATAGATTCTTCGGCA+TGG | - | chr1_2:7928302-7928321 | None:intergenic | 40.0% | |
| CTGATCCTTACTTAAGGGAA+TGG | + | chr1_2:7928317-7928336 | Msa0053510:CDS | 40.0% | |
| ! | GGAGTCATCAAAGGATTTTG+AGG | - | chr1_2:7928352-7928371 | None:intergenic | 40.0% |
| AAGGAAAGGATGGAAAATGG+AGG | + | chr1_2:7928422-7928441 | Msa0053510:CDS | 40.0% | |
| AGGAAAGGATGGAAAATGGA+GGG | + | chr1_2:7928423-7928442 | Msa0053510:CDS | 40.0% | |
| GTACCATCTGTTGCAAAGAA+AGG | - | chr1_2:7928535-7928554 | None:intergenic | 40.0% | |
| TTCTTTGCAACAGATGGTAC+TGG | + | chr1_2:7928535-7928554 | Msa0053510:CDS | 40.0% | |
| ACAGGAGAATATTATGGGCA+TGG | + | chr1_2:7928818-7928837 | Msa0053510:CDS | 40.0% | |
| CAGGAGAATATTATGGGCAT+GGG | + | chr1_2:7928819-7928838 | Msa0053510:CDS | 40.0% | |
| TCATCTAGACTGCAATACCA+AGG | + | chr1_2:7929027-7929046 | Msa0053510:intron | 40.0% | |
| ! | CTTCAAGAGTTGATCCACTT+TGG | - | chr1_2:7929417-7929436 | None:intergenic | 40.0% |
| !! | AAAAGGTATCACTGCATCTC+AGG | + | chr1_2:7929438-7929457 | Msa0053510:CDS | 40.0% |
| ACACTCAGCACTTTGTAGAT+CGG | - | chr1_2:7929580-7929599 | None:intergenic | 40.0% | |
| ! | TGTTCTTTAGAGAGTTCCTG+AGG | - | chr1_2:7929624-7929643 | None:intergenic | 40.0% |
| ! | GCATCAAGAAAAGGCATGAT+AGG | + | chr1_2:7929648-7929667 | Msa0053510:CDS | 40.0% |
| ! | AAAGGCATGATAGGACCATT+TGG | + | chr1_2:7929657-7929676 | Msa0053510:CDS | 40.0% |
| GCTAAAGCTTGCAAACCAAA+TGG | - | chr1_2:7929675-7929694 | None:intergenic | 40.0% | |
| ATATTGTAGTCCTCTCTGCT+TGG | - | chr1_2:7929707-7929726 | None:intergenic | 40.0% | |
| !! | CATCGCCGACTCTATATATT+CGG | - | chr1_2:7929734-7929753 | None:intergenic | 40.0% |
| CACTTTACAGGTCTTCATTG+CGG | + | chr1_2:7930186-7930205 | Msa0053510:intron | 40.0% | |
| ACTTTACAGGTCTTCATTGC+GGG | + | chr1_2:7930187-7930206 | Msa0053510:intron | 40.0% | |
| ! | CGGTCCATTATAGAGAGTTT+TGG | + | chr1_2:7930382-7930401 | Msa0053510:CDS | 40.0% |
| !!! | ATAGAGAGTTTTGGAGATGG+AGG | + | chr1_2:7930391-7930410 | Msa0053510:CDS | 40.0% |
| !!! | TAGAGAGTTTTGGAGATGGA+GGG | + | chr1_2:7930392-7930411 | Msa0053510:CDS | 40.0% |
| !! | GTTCTGAGATAACCACACTT+TGG | - | chr1_2:7930498-7930517 | None:intergenic | 40.0% |
| CTGAACAGCCATACAGAACT+TGG | + | chr1_2:7927073-7927092 | Msa0053510:CDS | 45.0% | |
| GCCAAAAAAGAGAGGGAATG+AGG | - | chr1_2:7928007-7928026 | None:intergenic | 45.0% | |
| CTGTCACAGCCAAAAAAGAG+AGG | - | chr1_2:7928015-7928034 | None:intergenic | 45.0% | |
| !!! | CTCTCTTTTTTGGCTGTGAC+AGG | + | chr1_2:7928013-7928032 | Msa0053510:intron | 45.0% |
| AACCCTGATGCTGCAACATT+TGG | + | chr1_2:7928079-7928098 | Msa0053510:CDS | 45.0% | |
| GACCAAATGTTGCAGCATCA+GGG | - | chr1_2:7928084-7928103 | None:intergenic | 45.0% | |
| TGACCAAATGTTGCAGCATC+AGG | - | chr1_2:7928085-7928104 | None:intergenic | 45.0% | |
| TTCCTTGCCATGCAGTTGAA+GGG | - | chr1_2:7928408-7928427 | None:intergenic | 45.0% | |
| TTTCCTTGCCATGCAGTTGA+AGG | - | chr1_2:7928409-7928428 | None:intergenic | 45.0% | |
| TTCAACTGCATGGCAAGGAA+AGG | + | chr1_2:7928408-7928427 | Msa0053510:CDS | 45.0% | |
| GGCAAGGAAAGGATGGAAAA+TGG | + | chr1_2:7928419-7928438 | Msa0053510:CDS | 45.0% | |
| GAGAATATTATGGGCATGGG+CGG | + | chr1_2:7928822-7928841 | Msa0053510:CDS | 45.0% | |
| GACATTGAAAAAGGATGGGC+TGG | + | chr1_2:7928868-7928887 | Msa0053510:CDS | 45.0% | |
| ACTGGAGAAACACTCCAAAG+TGG | + | chr1_2:7929400-7929419 | Msa0053510:CDS | 45.0% | |
| CACTCAGCACTTTGTAGATC+GGG | - | chr1_2:7929579-7929598 | None:intergenic | 45.0% | |
| ! | AGCAAGTGAAGTTGATCCTC+AGG | + | chr1_2:7929605-7929624 | Msa0053510:CDS | 45.0% |
| CATCAAAAGACCAAGCAGAG+AGG | + | chr1_2:7929694-7929713 | Msa0053510:CDS | 45.0% | |
| TGATGATAAGTGACCAGACC+AGG | + | chr1_2:7929766-7929785 | Msa0053510:CDS | 45.0% | |
| GGTGGTATATGCAGATTGAC+CGG | + | chr1_2:7930362-7930381 | Msa0053510:intron | 45.0% | |
| ! | CAATGATGGAAGCCAAAGTG+TGG | + | chr1_2:7930483-7930502 | Msa0053510:CDS | 45.0% |
| AGCATGAAGCAAGCAGAGTT+TGG | + | chr1_2:7930529-7930548 | Msa0053510:CDS | 45.0% | |
| CCACTAGGTGGAGTCATCAA+AGG | - | chr1_2:7928361-7928380 | None:intergenic | 50.0% | |
| ! | CCTTTGATGACTCCACCTAG+TGG | + | chr1_2:7928358-7928377 | Msa0053510:CDS | 50.0% |
| CCACCTAGTGGAGTTGAAGT+CGG | + | chr1_2:7928370-7928389 | Msa0053510:CDS | 50.0% | |
| !! | TCACCGACTTCAACTCCACT+AGG | - | chr1_2:7928376-7928395 | None:intergenic | 50.0% |
| TCAGAGACCCTTCAACTGCA+TGG | + | chr1_2:7928398-7928417 | Msa0053510:CDS | 50.0% | |
| ACTGCATGGCAAGGAAAGGA+TGG | + | chr1_2:7928412-7928431 | Msa0053510:CDS | 50.0% | |
| !! | AAAAGGATGGGCTGGTCTTC+AGG | + | chr1_2:7928876-7928895 | Msa0053510:CDS | 50.0% |
| !! | TCTGTGTAACGGATAGCGCA+AGG | - | chr1_2:7929212-7929231 | None:intergenic | 50.0% |
| GTGGGAAGCGATTACTGCAA+TGG | + | chr1_2:7929332-7929351 | Msa0053510:CDS | 50.0% | |
| CCGACTTCAACTCCACTAGG+TGG | - | chr1_2:7928373-7928392 | None:intergenic | 55.0% | |
| GACCCTTCAACTGCATGGCA+AGG | + | chr1_2:7928403-7928422 | Msa0053510:CDS | 55.0% | |
| GGTGCGCAAAATGGCGATGA+AGG | + | chr1_2:7928454-7928473 | Msa0053510:CDS | 55.0% | |
| GGCTCAGCCACTATACTCCC+AGG | + | chr1_2:7928214-7928233 | Msa0053510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7926889 | 7930835 | 7926889 | ID=Msa0053510;Name=Msa0053510 |
| chr1_2 | mRNA | 7926889 | 7930835 | 7926889 | ID=Msa0053510-mRNA-1;Parent=Msa0053510;Name=Msa0053510-mRNA-1;_AED=0.40;_eAED=0.40;_QI=141|1|1|1|0.8|0.66|6|265|551 |
| chr1_2 | exon | 7926889 | 7927129 | 7926889 | ID=Msa0053510-mRNA-1:exon:2803;Parent=Msa0053510-mRNA-1 |
| chr1_2 | exon | 7928026 | 7928897 | 7928026 | ID=Msa0053510-mRNA-1:exon:2804;Parent=Msa0053510-mRNA-1 |
| chr1_2 | exon | 7929301 | 7929459 | 7929301 | ID=Msa0053510-mRNA-1:exon:2805;Parent=Msa0053510-mRNA-1 |
| chr1_2 | exon | 7929549 | 7929787 | 7929549 | ID=Msa0053510-mRNA-1:exon:2806;Parent=Msa0053510-mRNA-1 |
| chr1_2 | exon | 7930196 | 7930286 | 7930196 | ID=Msa0053510-mRNA-1:exon:2807;Parent=Msa0053510-mRNA-1 |
| chr1_2 | exon | 7930376 | 7930835 | 7930376 | ID=Msa0053510-mRNA-1:exon:2808;Parent=Msa0053510-mRNA-1 |
| chr1_2 | five_prime_UTR | 7926889 | 7927029 | 7926889 | ID=Msa0053510-mRNA-1:five_prime_utr;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7927030 | 7927129 | 7927030 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7928026 | 7928897 | 7928026 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7929301 | 7929459 | 7929301 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7929549 | 7929787 | 7929549 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7930196 | 7930286 | 7930196 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | CDS | 7930376 | 7930570 | 7930376 | ID=Msa0053510-mRNA-1:cds;Parent=Msa0053510-mRNA-1 |
| chr1_2 | three_prime_UTR | 7930571 | 7930835 | 7930571 | ID=Msa0053510-mRNA-1:three_prime_utr;Parent=Msa0053510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
