AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054000 MtrunA17_Chr1g0150551 85.213 399 14 3 1 399 2 355 0.0 615
Msa0054000 MtrunA17_Chr4g0018381 59.375 224 45 4 68 290 16 194 2.79e-87 263
Msa0054000 MtrunA17_Chr3g0089671 27.097 155 102 2 58 212 34 177 1.32e-11 65.5
Msa0054000 MtrunA17_Chr3g0143441 28.931 159 102 4 58 216 63 210 4.51e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054000 AT1G64970.1 64.350 331 73 2 65 393 60 347 1.29e-150 430
Msa0054000 AT3G18000.1 40.000 90 52 1 131 220 284 371 1.50e-12 69.3
Msa0054000 AT1G73600.1 38.889 90 53 1 131 220 283 370 4.34e-12 68.2
Msa0054000 AT1G73600.2 38.889 90 53 1 131 220 297 384 4.57e-12 67.8
Msa0054000 AT1G48600.2 38.889 90 53 1 131 220 284 371 7.17e-12 67.4
Msa0054000 AT1G48600.1 38.889 90 53 1 131 220 268 355 7.80e-12 67.0
Msa0054000 AT5G13710.1 25.806 155 104 2 58 212 34 177 9.15e-11 63.2
Msa0054000 AT5G13710.2 25.806 155 104 2 58 212 34 177 9.15e-11 63.2

Find 139 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTTTGTTGCTCCATTT+TGG 0.111682 1_2:-8542668 Msa0054000:CDS
GAAATTCTATGTGGCACTTT+TGG 0.142526 1_2:-8541022 Msa0054000:three_prime_UTR
CTGGTATATGGGAGAATATT+TGG 0.153591 1_2:-8546594 Msa0054000:CDS
AAATGCTTTCACAATTTATT+TGG 0.191484 1_2:-8540954 None:intergenic
AGGTACCTGGCCAAGAAATT+TGG 0.197026 1_2:-8543981 Msa0054000:CDS
ACAACTTGCCCCAAATTTCT+TGG 0.230657 1_2:+8543971 None:intergenic
ACACCATGTTACTATTATTA+TGG 0.233170 1_2:+8543213 None:intergenic
ATGATGAGTCTTCTGGTATA+TGG 0.237023 1_2:-8546606 Msa0054000:CDS
TACTATTAAATCATAATTCT+AGG 0.238975 1_2:+8546930 None:intergenic
TTTATGATTGGACAACTTAT+AGG 0.248341 1_2:+8547079 None:intergenic
GAGATTGATTACAACTTTAC+TGG 0.277224 1_2:+8543312 None:intergenic
TGTTACTGTACTACATTATA+TGG 0.282565 1_2:-8547044 Msa0054000:five_prime_UTR
TGGTATATGGGAGAATATTT+GGG 0.285510 1_2:-8546593 Msa0054000:CDS
CGTATCACTGCTGGCCAAAA+TGG 0.295543 1_2:+8542654 None:intergenic
GGTACCTGGCCAAGAAATTT+GGG 0.302133 1_2:-8543980 Msa0054000:CDS
TAATAGTAACATGGTGTCAT+AGG 0.305812 1_2:-8543207 Msa0054000:CDS
GCTATGCCATTGATGATAGA+AGG 0.319042 1_2:-8542010 Msa0054000:CDS
GTTGATGTTGGGTGTGGCAT+AGG 0.327476 1_2:-8544014 Msa0054000:CDS
ATTGAGCAATAACATGTTCT+TGG 0.335515 1_2:-8541262 Msa0054000:three_prime_UTR
TTGATGTTGGGTGTGGCATA+GGG 0.339110 1_2:-8544013 Msa0054000:CDS
GTGAGACGGCAAAAGAAATT+AGG 0.344649 1_2:+8543380 None:intergenic
AGGCTTTCGACATGTGATAA+TGG 0.352068 1_2:+8541961 None:intergenic
CATTGATGATAGAAGGATTC+AGG 0.353317 1_2:-8542003 Msa0054000:CDS
TTAAGAACAAAGTGAGTGTT+TGG 0.356229 1_2:-8541202 Msa0054000:three_prime_UTR
GGCCATTGTGGATGGATTGT+GGG 0.358426 1_2:-8541241 Msa0054000:three_prime_UTR
ACTTGAAACCATGTCCCTTC+AGG 0.364722 1_2:-8543071 Msa0054000:intron
GACATTGGAGAAAACTCTAA+TGG 0.364929 1_2:-8541366 Msa0054000:intron
TTCAGCAGTAGAAGAAGAAA+AGG 0.367968 1_2:-8546724 Msa0054000:CDS
TTAGCTCTTTCAGCTTGAAC+AGG 0.369380 1_2:+8543930 None:intergenic
GATCCTTCTCCCATTGTTGT+AGG 0.391437 1_2:+8543161 None:intergenic
TGTTGTAGGGATTCTTCATC+CGG 0.397769 1_2:+8543175 None:intergenic
TCTAATTTGTGTTATAGCAT+TGG 0.403101 1_2:-8540977 Msa0054000:three_prime_UTR
ATTAGGACCTTCGGTTTGTT+AGG 0.405320 1_2:+8543397 None:intergenic
CCAACATCAACTACACTCTT+TGG 0.405985 1_2:+8544026 None:intergenic
TTTCTTCTTCTACTGCTGAA+TGG 0.407358 1_2:+8546727 None:intergenic
GTTAGCTCGGGTAGCAGCAC+CGG 0.413058 1_2:-8543242 Msa0054000:CDS
ACATTGGAGAAAACTCTAAT+GGG 0.414727 1_2:-8541365 Msa0054000:intron
ACATTGAAGATGCTGATTAT+CGG 0.417492 1_2:+8541340 None:intergenic
ACTAGATCAAGCTGGCCGTC+AGG 0.419331 1_2:+8543448 None:intergenic
TTTCATGTCTGACGTGTGTT+TGG 0.429326 1_2:+8546992 None:intergenic
TGGCCATTGTGGATGGATTG+TGG 0.429897 1_2:-8541242 Msa0054000:three_prime_UTR
GAAACAGAAACAGTAGAATC+AGG 0.439311 1_2:+8546541 None:intergenic
TGATGAGTCTTCTGGTATAT+GGG 0.439939 1_2:-8546605 Msa0054000:CDS
AGTTTGTTGGTGAGTTAGCT+CGG 0.441726 1_2:-8543255 Msa0054000:CDS
GCTCAGATGATCCATCAAAA+TGG 0.445713 1_2:-8544049 Msa0054000:intron
TCTGCCATGTCAGATCCTAC+TGG 0.451759 1_2:-8541836 Msa0054000:three_prime_UTR
GCAAAAGAAATTAGGACCTT+CGG 0.459185 1_2:+8543388 None:intergenic
CTGCCATGTCAGATCCTACT+GGG 0.471569 1_2:-8541835 Msa0054000:three_prime_UTR
TGTGGACGCCGGTCGGTGAA+TGG 0.476581 1_2:+8541171 None:intergenic
CTTACCACTTCGCAAAATTG+AGG 0.479825 1_2:+8542605 None:intergenic
TGTCTGACGTGTGTTTGGTT+TGG 0.482358 1_2:+8546997 None:intergenic
ATCCTTCTCCCATTGTTGTA+GGG 0.488458 1_2:+8543162 None:intergenic
TGCTCAAGGATTAGCTGATA+AGG 0.488710 1_2:-8543895 Msa0054000:intron
CTGAATCCTTCTATCATCAA+TGG 0.489050 1_2:+8542004 None:intergenic
TGAAGAATCCCTACAACAAT+GGG 0.491464 1_2:-8543170 Msa0054000:CDS
GAAAGAAGCGATGGTGGTAA+TGG 0.494033 1_2:-8546674 Msa0054000:CDS
AGGGTCGTTGCGTCTATCAA+TGG 0.500135 1_2:-8546704 Msa0054000:CDS
CGCCGGTCGGTGAATGGATG+TGG 0.505409 1_2:+8541177 None:intergenic
TTGCCCCAAATTTCTTGGCC+AGG 0.505728 1_2:+8543976 None:intergenic
TGGGGTGATCATATGCATCA+TGG 0.511664 1_2:-8546574 Msa0054000:CDS
AGAGAAGAAGAAACTTCAGT+TGG 0.512900 1_2:-8546644 Msa0054000:CDS
AATGCTCTGGCTGCTGCTCA+AGG 0.516953 1_2:-8543909 Msa0054000:CDS
ATGAAGAATCCCTACAACAA+TGG 0.518562 1_2:-8543171 Msa0054000:CDS
CGTTCAGCATTAACATGGAA+GGG 0.521906 1_2:-8542633 Msa0054000:CDS
AGATTCTTAACTATCTCTTG+TGG 0.523094 1_2:+8540997 None:intergenic
AGGACATCAAATCAGCAGAT+TGG 0.524852 1_2:-8542692 Msa0054000:CDS
AATAGTAACATGGTGTCATA+GGG 0.525266 1_2:-8543206 Msa0054000:CDS
TCAAGCTGGCCGTCAGGGAA+TGG 0.527365 1_2:+8543454 None:intergenic
TATCAAAATAAATGACATGT+AGG 0.527639 1_2:+8541899 None:intergenic
GATGTTGGGTGTGGCATAGG+GGG 0.529490 1_2:-8544011 Msa0054000:CDS
CCAAAGAGTGTAGTTGATGT+TGG 0.533283 1_2:-8544026 Msa0054000:CDS
TGATGTTGGGTGTGGCATAG+GGG 0.537744 1_2:-8544012 Msa0054000:CDS
AGCTGAAAGAGCTAATGCTC+TGG 0.537978 1_2:-8543922 Msa0054000:CDS
ATGTTCTTGGCCATTGTGGA+TGG 0.538737 1_2:-8541249 Msa0054000:three_prime_UTR
GAGAAGAAGAAACTTCAGTT+GGG 0.540045 1_2:-8546643 Msa0054000:CDS
CAAAGAGTGTAGTTGATGTT+GGG 0.545229 1_2:-8544025 Msa0054000:CDS
AAATTTGGGGCAAGTTGTGT+AGG 0.545845 1_2:-8543966 Msa0054000:CDS
CTAGATCAAGCTGGCCGTCA+GGG 0.547245 1_2:+8543449 None:intergenic
ATTCACCGACCGGCGTCCAC+AGG 0.547491 1_2:-8541169 Msa0054000:three_prime_UTR
TCAGCAGTTGAGCACCACTC+TGG 0.547647 1_2:+8543106 None:intergenic
GCCATTGTGGATGGATTGTG+GGG 0.548971 1_2:-8541240 Msa0054000:three_prime_UTR
GCTTGATCTAGTGTGGTCAA+TGG 0.550035 1_2:-8543437 Msa0054000:CDS
GGCCAAAATGGAGCAACAAA+GGG 0.551098 1_2:+8542666 None:intergenic
AAGAACATGTTATTGCTCAA+TGG 0.553595 1_2:+8541264 None:intergenic
TGGCCAAAATGGAGCAACAA+AGG 0.554035 1_2:+8542665 None:intergenic
TTAGCTCGGGTAGCAGCACC+GGG 0.554922 1_2:-8543241 Msa0054000:CDS
TTCCACATCCATTCACCGAC+CGG 0.556466 1_2:-8541179 Msa0054000:three_prime_UTR
GATTGAATAAGTGATATTGA+AGG 0.558484 1_2:-8541813 Msa0054000:three_prime_UTR
ACGTTCAGCATTAACATGGA+AGG 0.559901 1_2:-8542634 Msa0054000:CDS
GTGTCATAGGGATCTTCGCC+CGG 0.561869 1_2:-8543194 Msa0054000:CDS
ACTATTATTATGGTGCCACC+CGG 0.564921 1_2:+8543223 None:intergenic
GTTTGTTGGTGAGTTAGCTC+GGG 0.570314 1_2:-8543254 Msa0054000:CDS
ATTAACTACCTGAAGGGACA+TGG 0.576544 1_2:+8543063 None:intergenic
ATCCCTACAACAATGGGAGA+AGG 0.577935 1_2:-8543164 Msa0054000:CDS
TCAGCAGTAGAAGAAGAAAA+GGG 0.587307 1_2:-8546723 Msa0054000:CDS
GTTGTAGGGATTCTTCATCC+GGG 0.587651 1_2:+8543176 None:intergenic
TCTAGGTACACACGAAACTA+CGG 0.588897 1_2:+8546947 None:intergenic
AATGCTGAACGTATCACTGC+TGG 0.591367 1_2:+8542645 None:intergenic
ATTGGACAACTTATAGGTGT+AGG 0.594411 1_2:+8547085 None:intergenic
GGCGGCGGTGAAAGAAGCGA+TGG 0.597232 1_2:-8546683 Msa0054000:CDS
TAGCTCTTTCAGCTTGAACA+GGG 0.597928 1_2:+8543931 None:intergenic
TAACATGTTCTTGGCCATTG+TGG 0.598975 1_2:-8541253 Msa0054000:three_prime_UTR
GAAAGCCTGTGGACGCCGGT+CGG 0.600869 1_2:+8541164 None:intergenic
TAGAGCGTCAGCAACTTGAA+AGG 0.605316 1_2:+8543483 None:intergenic
GTTGCGTCTATCAATGGCGG+CGG 0.607850 1_2:-8546698 Msa0054000:CDS
AGCGCGTGTACCGTTGCAAG+TGG 0.608895 1_2:-8546863 Msa0054000:five_prime_UTR
AGTGTAGTTGATGTTGGGTG+TGG 0.612189 1_2:-8544020 Msa0054000:CDS
ATATTAATTAACTACCTGAA+GGG 0.613275 1_2:+8543057 None:intergenic
AGTAGAAAGCCTGTGGACGC+CGG 0.615810 1_2:+8541160 None:intergenic
TCGAAAGCCTGAAAACGCAG+AGG 0.616363 1_2:-8541948 Msa0054000:CDS
TAGGTGTAGGACGCTATGAT+CGG 0.617514 1_2:+8547098 None:intergenic
CTTTCACAGTAGAAAGCCTG+TGG 0.617713 1_2:+8541153 None:intergenic
GGCGGTGAAAGAAGCGATGG+TGG 0.621331 1_2:-8546680 Msa0054000:CDS
TGATACGTTCAGCATTAACA+TGG 0.622052 1_2:-8542638 Msa0054000:CDS
GGTATATGGGAGAATATTTG+GGG 0.625495 1_2:-8546592 Msa0054000:CDS
TTGTGTGTTACCACTTGCAA+CGG 0.629244 1_2:+8546853 None:intergenic
GATGATAGAAGGATTCAGGA+AGG 0.633554 1_2:-8541999 Msa0054000:CDS
ATGATAGAAGGATTCAGGAA+GGG 0.634567 1_2:-8541998 Msa0054000:CDS
GTCGTTGCGTCTATCAATGG+CGG 0.635150 1_2:-8546701 Msa0054000:CDS
TGTAGCACTGGAGTATGATG+TGG 0.635922 1_2:-8541290 Msa0054000:three_prime_UTR
ATAGTATCTCTGTGGTGCTG+AGG 0.637618 1_2:+8546769 None:intergenic
ACGGCCAGCTTGATCTAGTG+TGG 0.643111 1_2:-8543444 Msa0054000:CDS
TTGACCACACTAGATCAAGC+TGG 0.643676 1_2:+8543440 None:intergenic
CGAAAGCCTGAAAACGCAGA+GGG 0.662434 1_2:-8541947 Msa0054000:CDS
GTACCTGGCCAAGAAATTTG+GGG 0.663725 1_2:-8543979 Msa0054000:CDS
GCATATGCCTAACAAACCGA+AGG 0.666822 1_2:-8543404 Msa0054000:CDS
ATCACTTATTCAATCCCAGT+AGG 0.671400 1_2:+8541821 None:intergenic
AATCCCAGTAGGATCTGACA+TGG 0.675840 1_2:+8541832 None:intergenic
GCTCGGGTAGCAGCACCGGG+TGG 0.679718 1_2:-8543238 Msa0054000:CDS
CATTGGAGAAAACTCTAATG+GGG 0.681431 1_2:-8541364 Msa0054000:intron
ACCCCACAATCCATCCACAA+TGG 0.682695 1_2:+8541239 None:intergenic
GGTAACACACAACACAACAA+TGG 0.682999 1_2:-8546842 Msa0054000:exon
AGCACTGGAGTATGATGTGG+CGG 0.683510 1_2:-8541287 Msa0054000:three_prime_UTR
GCACCATAATAATAGTAACA+TGG 0.689337 1_2:-8543216 Msa0054000:CDS
AGTGCAGTATGCAAGTGAGA+CGG 0.690366 1_2:+8543366 None:intergenic
CTAGAACAACCATTCCCTGA+CGG 0.703190 1_2:-8543463 Msa0054000:CDS
CTAGTGTGGTCAATGGAGAG+CGG 0.706985 1_2:-8543430 Msa0054000:CDS
TAGTAATGATAGTATCTCTG+TGG 0.714916 1_2:+8546761 None:intergenic
ATAGAAACTCATCAAACGTG+CGG 0.723256 1_2:+8541098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTTTTTATGAT+TGG + chr1_2:8540989-8541008 None:intergenic 10.0%
!!! TTTTATACAATTTCTTATAT+TGG - chr1_2:8545142-8545161 Msa0054000:intron 10.0%
!! TACTATTAAATCATAATTCT+AGG + chr1_2:8541126-8541145 None:intergenic 15.0%
!!! TATATGTTCTTAGTTTTTAT+AGG + chr1_2:8541887-8541906 None:intergenic 15.0%
!! AAAAACTAAGAACATATATA+TGG - chr1_2:8541889-8541908 Msa0054000:three_prime_UTR 15.0%
!! AAAACTAAGAACATATATAT+GGG - chr1_2:8541890-8541909 Msa0054000:three_prime_UTR 15.0%
!! TGTAAAAAAATAGATGATAA+AGG + chr1_2:8544206-8544225 None:intergenic 15.0%
!!! AAACAATTTTTGTATGAAAT+AGG + chr1_2:8544777-8544796 None:intergenic 15.0%
!!! TAGTATACTTTGTTTTGTTT+CGG - chr1_2:8541693-8541712 Msa0054000:intron 20.0%
!! AAACTAAGAACATATATATG+GGG - chr1_2:8541891-8541910 Msa0054000:three_prime_UTR 20.0%
!!! AAACTATCTTTGAAAACTTA+TGG + chr1_2:8542326-8542345 None:intergenic 20.0%
!! ACATTAGTGTTTATAATGAT+AGG - chr1_2:8542397-8542416 Msa0054000:intron 20.0%
!!! AATCTTCATTTTTTCATCTA+AGG + chr1_2:8542468-8542487 None:intergenic 20.0%
!! AATCATTAATTTATCACGTT+TGG - chr1_2:8542491-8542510 Msa0054000:intron 20.0%
!! ATCATTAATTTATCACGTTT+GGG - chr1_2:8542492-8542511 Msa0054000:intron 20.0%
!!! TATCGTAATTTTGATACATT+TGG + chr1_2:8542590-8542609 None:intergenic 20.0%
!! CAATAAACATATTTAACTCT+GGG + chr1_2:8542858-8542877 None:intergenic 20.0%
!!! TTTTTTTCTTCATTTTTTGC+TGG - chr1_2:8543921-8543940 Msa0054000:CDS 20.0%
!!! TTTGCTGGTAAATTTTATTT+TGG - chr1_2:8543936-8543955 Msa0054000:CDS 20.0%
!! ATATTAATTAACTACCTGAA+GGG + chr1_2:8544999-8545018 None:intergenic 20.0%
!! TATATTAATTAACTACCTGA+AGG + chr1_2:8545000-8545019 None:intergenic 20.0%
!! TGAACACTTATATTAGTATT+TGG - chr1_2:8545094-8545113 Msa0054000:intron 20.0%
!! TTTCCATATCAATAAGTTTA+CGG + chr1_2:8545213-8545232 None:intergenic 20.0%
!! TATTGATATGGAAAAACTTA+AGG - chr1_2:8545219-8545238 Msa0054000:intron 20.0%
!!! TATTGTTAGTATTTTGTTGA+GGG - chr1_2:8545623-8545642 Msa0054000:intron 20.0%
!! GGAGTATATAACATTAATTT+GGG + chr1_2:8545777-8545796 None:intergenic 20.0%
!! TGGAGTATATAACATTAATT+TGG + chr1_2:8545778-8545797 None:intergenic 20.0%
!!! TAAATTGATAATGATCTTGT+TGG - chr1_2:8545947-8545966 Msa0054000:intron 20.0%
!! TATCAAAATAAATGACATGT+AGG + chr1_2:8546157-8546176 None:intergenic 20.0%
!!! TAAAACTTGTTTTACTATCT+AGG + chr1_2:8546621-8546640 None:intergenic 20.0%
!!! TTTAATATTTTTTGTAGCAC+TGG - chr1_2:8546751-8546770 Msa0054000:CDS 20.0%
!!! ATAAGTTTTGAAATTCTATG+TGG - chr1_2:8547022-8547041 Msa0054000:five_prime_UTR 20.0%
! TTTATGATTGGACAACTTAT+AGG + chr1_2:8540977-8540996 None:intergenic 25.0%
! TGTTACTGTACTACATTATA+TGG - chr1_2:8541009-8541028 Msa0054000:three_prime_UTR 25.0%
!! TCAAAGAGTTTTCAATCATA+CGG + chr1_2:8541559-8541578 None:intergenic 25.0%
!!! GATTGATTTGATTGATTACT+AGG - chr1_2:8541917-8541936 Msa0054000:three_prime_UTR 25.0%
!! AAAAAAGAGAGCATATATGT+AGG - chr1_2:8542228-8542247 Msa0054000:intron 25.0%
!! AAAAAGAGAGCATATATGTA+GGG - chr1_2:8542229-8542248 Msa0054000:intron 25.0%
! TCAGATAATTCAATCAAATC+AGG + chr1_2:8542255-8542274 None:intergenic 25.0%
! ATTAAGATGTATATCCAAAC+AGG - chr1_2:8542441-8542460 Msa0054000:intron 25.0%
! TTAAGATGTATATCCAAACA+GGG - chr1_2:8542442-8542461 Msa0054000:intron 25.0%
! TCATTAATTTATCACGTTTG+GGG - chr1_2:8542493-8542512 Msa0054000:intron 25.0%
!!! TCTTTGGTTAGTTTTGTTAT+CGG - chr1_2:8542661-8542680 Msa0054000:CDS 25.0%
! GTGTCTTTCATTAATCAATT+TGG - chr1_2:8542686-8542705 Msa0054000:CDS 25.0%
! GTCTTATGTTAGTAATTTCA+TGG + chr1_2:8542713-8542732 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG + chr1_2:8542790-8542809 None:intergenic 25.0%
! CCAATAAACATATTTAACTC+TGG + chr1_2:8542859-8542878 None:intergenic 25.0%
! CCAGAGTTAAATATGTTTAT+TGG - chr1_2:8542856-8542875 Msa0054000:intron 25.0%
!!! ATTGGAGTAAATTGTCATTT+TGG - chr1_2:8542874-8542893 Msa0054000:intron 25.0%
!!! AATCATTTTAGTCCCTAAAT+GGG + chr1_2:8543035-8543054 None:intergenic 25.0%
!!! TAATCATTTTAGTCCCTAAA+TGG + chr1_2:8543036-8543055 None:intergenic 25.0%
! ATATTTAAACCGTGTAACTT+GGG + chr1_2:8543127-8543146 None:intergenic 25.0%
! TTACACGGTTTAAATATCTT+GGG - chr1_2:8543130-8543149 Msa0054000:CDS 25.0%
!!! CTGGTAAATTTTATTTTGGT+TGG - chr1_2:8543940-8543959 Msa0054000:CDS 25.0%
!!! AAATTTTATTTTGGTTGGAC+TGG - chr1_2:8543945-8543964 Msa0054000:CDS 25.0%
! TATTATAATGAATCTCACCA+AGG - chr1_2:8544263-8544282 Msa0054000:intron 25.0%
! ATTATAATGAATCTCACCAA+GGG - chr1_2:8544264-8544283 Msa0054000:intron 25.0%
!! ATATGATACGTGTTTTCTAT+CGG + chr1_2:8544350-8544369 None:intergenic 25.0%
! CAAAAATTGTTTCAGTTTGT+TGG - chr1_2:8544785-8544804 Msa0054000:intron 25.0%
! ACACCATGTTACTATTATTA+TGG + chr1_2:8544843-8544862 None:intergenic 25.0%
! TAACCGTAAACTTATTGATA+TGG - chr1_2:8545207-8545226 Msa0054000:intron 25.0%
!! GTATTGTTAGTATTTTGTTG+AGG - chr1_2:8545622-8545641 Msa0054000:intron 25.0%
! TCATATAAACCATTAACTGT+TGG + chr1_2:8545821-8545840 None:intergenic 25.0%
! ATTTCACACATATTCAGAAA+AGG + chr1_2:8545884-8545903 None:intergenic 25.0%
! TATCAATTTATGTACTCCTT+CGG + chr1_2:8545937-8545956 None:intergenic 25.0%
! GATTGAATAAGTGATATTGA+AGG - chr1_2:8546240-8546259 Msa0054000:intron 25.0%
! AATTGAACTGACATTTCATT+TGG + chr1_2:8546298-8546317 None:intergenic 25.0%
! TGGAAAAAATGTGTTAGAAT+GGG + chr1_2:8546440-8546459 None:intergenic 25.0%
! ATGGAAAAAATGTGTTAGAA+TGG + chr1_2:8546441-8546460 None:intergenic 25.0%
!!! GCAAACTTATTTTACTATCA+AGG - chr1_2:8546477-8546496 Msa0054000:CDS 25.0%
!! TCAGTAAGAGTTTTTCTTTT+TGG - chr1_2:8546507-8546526 Msa0054000:CDS 25.0%
! ACAAACTAGTTATATGACTA+GGG + chr1_2:8546567-8546586 None:intergenic 25.0%
! TACAAACTAGTTATATGACT+AGG + chr1_2:8546568-8546587 None:intergenic 25.0%
!! TTTTACTGAGATTCTTGTAT+GGG - chr1_2:8546636-8546655 Msa0054000:CDS 25.0%
!! TCTAATTTGTGTTATAGCAT+TGG - chr1_2:8547076-8547095 Msa0054000:five_prime_UTR 25.0%
! AAACAAGGCATAATTTTTGC+TGG + chr1_2:8541159-8541178 None:intergenic 30.0%
CGCTATACAACAAAAAAACA+AGG + chr1_2:8541174-8541193 None:intergenic 30.0%
TAGTAATGATAGTATCTCTG+TGG + chr1_2:8541295-8541314 None:intergenic 30.0%
TGGTATATGGGAGAATATTT+GGG - chr1_2:8541460-8541479 Msa0054000:intron 30.0%
TTTATGGGTGGAATAATTCT+TGG - chr1_2:8541789-8541808 Msa0054000:intron 30.0%
TGAACAGTAAGAAGAGAAAA+CGG + chr1_2:8541944-8541963 None:intergenic 30.0%
TTACTGTTCACTATTGTACT+AGG - chr1_2:8541954-8541973 Msa0054000:CDS 30.0%
GGACATAGTCAAATTCAAAA+CGG + chr1_2:8542044-8542063 None:intergenic 30.0%
GTTAATGAGTTCTACAGTAA+TGG - chr1_2:8542095-8542114 Msa0054000:intron 30.0%
AACCTATGAGTTAAATTGTC+AGG - chr1_2:8542525-8542544 Msa0054000:intron 30.0%
AACCTGACAATTTAACTCAT+AGG + chr1_2:8542530-8542549 None:intergenic 30.0%
ATGAGTTAAATTGTCAGGTT+TGG - chr1_2:8542530-8542549 Msa0054000:intron 30.0%
!!! CTCTGCTTCATAACTTTTTT+TGG + chr1_2:8542807-8542826 None:intergenic 30.0%
GCATCAAAATTACAAACCAA+AGG - chr1_2:8542937-8542956 Msa0054000:intron 30.0%
TATTTAAACCGTGTAACTTG+GGG + chr1_2:8543126-8543145 None:intergenic 30.0%
GATATTTAAACCGTGTAACT+TGG + chr1_2:8543128-8543147 None:intergenic 30.0%
GTTACACGGTTTAAATATCT+TGG - chr1_2:8543129-8543148 Msa0054000:CDS 30.0%
TAAATCATCGTATTCAAGCT+GGG - chr1_2:8543190-8543209 Msa0054000:CDS 30.0%
! TTTTCCACCAACTTTTCTAT+AGG + chr1_2:8543462-8543481 None:intergenic 30.0%
!! TAGAAAAGTTGGTGGAAAAT+AGG - chr1_2:8543463-8543482 Msa0054000:CDS 30.0%
TTGATCTACTCTTCTAACAA+CGG + chr1_2:8543529-8543548 None:intergenic 30.0%
TAGAAGAGTAGATCAAATAG+AGG - chr1_2:8543533-8543552 Msa0054000:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr1_2:8543588-8543607 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG + chr1_2:8543598-8543617 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG - chr1_2:8543596-8543615 Msa0054000:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr1_2:8543605-8543624 Msa0054000:intron 30.0%
! TTGGATCCAAATATGGTTTT+TGG - chr1_2:8543636-8543655 Msa0054000:intron 30.0%
GTGATTGAATATAACCACAT+AGG - chr1_2:8543760-8543779 Msa0054000:intron 30.0%
ATACATGCATCAATAACAAC+AGG + chr1_2:8543984-8544003 None:intergenic 30.0%
ATACAAGTTCTTAATACCCT+TGG + chr1_2:8544283-8544302 None:intergenic 30.0%
GAATAGAATCTACTCATATG+TGG - chr1_2:8544304-8544323 Msa0054000:intron 30.0%
TTGCATTGCATAAACAGTAA+AGG + chr1_2:8544535-8544554 None:intergenic 30.0%
GAGATTGATTACAACTTTAC+TGG + chr1_2:8544744-8544763 None:intergenic 30.0%
GCACCATAATAATAGTAACA+TGG - chr1_2:8544837-8544856 Msa0054000:intron 30.0%
!! TAATAGTAACATGGTGTCAT+AGG - chr1_2:8544846-8544865 Msa0054000:intron 30.0%
!! AATAGTAACATGGTGTCATA+GGG - chr1_2:8544847-8544866 Msa0054000:intron 30.0%
TGCAACTATCTCATTTGAAT+AGG + chr1_2:8545255-8545274 None:intergenic 30.0%
TGTTTGATTGCTATCTATCT+AGG - chr1_2:8545341-8545360 Msa0054000:intron 30.0%
! TTTTCCTAAACAACAAATGC+TGG - chr1_2:8545600-8545619 Msa0054000:intron 30.0%
!! AATACCAGCATTTGTTGTTT+AGG + chr1_2:8545607-8545626 None:intergenic 30.0%
TAATGCAACACGGATATATA+AGG + chr1_2:8545716-8545735 None:intergenic 30.0%
ATCAAACATGTAATGCAACA+CGG + chr1_2:8545726-8545745 None:intergenic 30.0%
CCATTATCATAAATGCATAC+TGG + chr1_2:8545798-8545817 None:intergenic 30.0%
CCAGTATGCATTTATGATAA+TGG - chr1_2:8545795-8545814 Msa0054000:intron 30.0%
!!! TCATTTTTGTTATTGTGTGC+AGG - chr1_2:8545995-8546014 Msa0054000:intron 30.0%
GCAGGTCTAAAAACTATAAA+AGG - chr1_2:8546013-8546032 Msa0054000:intron 30.0%
!! AGTTTGCTGACATTCTTATA+TGG + chr1_2:8546464-8546483 None:intergenic 30.0%
TGTGTAATCAAAACAACTTG+TGG + chr1_2:8546535-8546554 None:intergenic 30.0%
! GTTTTACTGAGATTCTTGTA+TGG - chr1_2:8546635-8546654 Msa0054000:CDS 30.0%
ATGTCTATGCAATCAACAAA+TGG + chr1_2:8546672-8546691 None:intergenic 30.0%
! TTTGTTGATTGCATAGACAT+TGG - chr1_2:8546672-8546691 Msa0054000:CDS 30.0%
ACATTGGAGAAAACTCTAAT+GGG - chr1_2:8546688-8546707 Msa0054000:CDS 30.0%
! ACATTGAAGATGCTGATTAT+CGG + chr1_2:8546716-8546735 None:intergenic 30.0%
AAGAACATGTTATTGCTCAA+TGG + chr1_2:8546792-8546811 None:intergenic 30.0%
ATTGAGCAATAACATGTTCT+TGG - chr1_2:8546791-8546810 Msa0054000:CDS 30.0%
TTAAGAACAAAGTGAGTGTT+TGG - chr1_2:8546851-8546870 Msa0054000:five_prime_UTR 30.0%
AACACGCTAAAAATTGAGTT+CGG - chr1_2:8546988-8547007 Msa0054000:five_prime_UTR 30.0%
! AAATTCTATGTGGCACTTTT+GGG - chr1_2:8547032-8547051 Msa0054000:five_prime_UTR 30.0%
AGATTCTTAACTATCTCTTG+TGG + chr1_2:8547059-8547078 None:intergenic 30.0%
ATTGGACAACTTATAGGTGT+AGG + chr1_2:8540971-8540990 None:intergenic 35.0%
TTTCTTCTTCTACTGCTGAA+TGG + chr1_2:8541329-8541348 None:intergenic 35.0%
TTCAGCAGTAGAAGAAGAAA+AGG - chr1_2:8541329-8541348 Msa0054000:three_prime_UTR 35.0%
TCAGCAGTAGAAGAAGAAAA+GGG - chr1_2:8541330-8541349 Msa0054000:three_prime_UTR 35.0%
AGAGAAGAAGAAACTTCAGT+TGG - chr1_2:8541409-8541428 Msa0054000:intron 35.0%
GAGAAGAAGAAACTTCAGTT+GGG - chr1_2:8541410-8541429 Msa0054000:intron 35.0%
!! GAGTTTTATGATGAGTCTTC+TGG - chr1_2:8541440-8541459 Msa0054000:intron 35.0%
ATGATGAGTCTTCTGGTATA+TGG - chr1_2:8541447-8541466 Msa0054000:intron 35.0%
TGATGAGTCTTCTGGTATAT+GGG - chr1_2:8541448-8541467 Msa0054000:intron 35.0%
CTGGTATATGGGAGAATATT+TGG - chr1_2:8541459-8541478 Msa0054000:intron 35.0%
GGTATATGGGAGAATATTTG+GGG - chr1_2:8541461-8541480 Msa0054000:intron 35.0%
GAAACAGAAACAGTAGAATC+AGG + chr1_2:8541515-8541534 None:intergenic 35.0%
!!! TGTTTTGTTTCGGTTCGAAT+TGG - chr1_2:8541703-8541722 Msa0054000:intron 35.0%
! CTGACTTGAGTTCGATTTAT+GGG - chr1_2:8541774-8541793 Msa0054000:intron 35.0%
! TTTTATAGGTGTTAACGCTC+CGG + chr1_2:8541873-8541892 None:intergenic 35.0%
TGTCCAAATCAAGTTCACTA+CGG - chr1_2:8542059-8542078 Msa0054000:intron 35.0%
TCGATTGGTGAAACAATTCT+TGG - chr1_2:8542139-8542158 Msa0054000:intron 35.0%
TGTGTTAACCCTTCGATAAT+GGG + chr1_2:8542208-8542227 None:intergenic 35.0%
TTGTGTTAACCCTTCGATAA+TGG + chr1_2:8542209-8542228 None:intergenic 35.0%
GTCTTGTATGTGTCTTTCTT+TGG - chr1_2:8542645-8542664 Msa0054000:CDS 35.0%
ATATCATACCCCAAGTTACA+CGG - chr1_2:8543115-8543134 Msa0054000:CDS 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG + chr1_2:8543157-8543176 None:intergenic 35.0%
GTAAATCATCGTATTCAAGC+TGG - chr1_2:8543189-8543208 Msa0054000:CDS 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr1_2:8543255-8543274 Msa0054000:CDS 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr1_2:8543264-8543283 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr1_2:8543268-8543287 Msa0054000:CDS 35.0%
AGACTAGATAGGATAGGATT+AGG - chr1_2:8543403-8543422 Msa0054000:CDS 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_2:8543477-8543496 Msa0054000:CDS 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr1_2:8543610-8543629 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_2:8543629-8543648 Msa0054000:intron 35.0%
ATGACGCCAAAAACCATATT+TGG + chr1_2:8543645-8543664 None:intergenic 35.0%
CATCAGATTGAAGATGTAGT+TGG + chr1_2:8543802-8543821 None:intergenic 35.0%
ACATCTTCAATCTGATGTCT+TGG - chr1_2:8543805-8543824 Msa0054000:intron 35.0%
!! CTTGGTGCTACATAGAAAAA+AGG - chr1_2:8543823-8543842 Msa0054000:intron 35.0%
! CAAAGAGTGTAGTTGATGTT+GGG - chr1_2:8544028-8544047 Msa0054000:CDS 35.0%
ATCAATGTCAGTATCGTGTT+TGG - chr1_2:8544459-8544478 Msa0054000:intron 35.0%
ATGCAATGCAATGCAATTGT+AGG - chr1_2:8544544-8544563 Msa0054000:intron 35.0%
GCAAAAGAAATTAGGACCTT+CGG + chr1_2:8544668-8544687 None:intergenic 35.0%
ATGAAGAATCCCTACAACAA+TGG - chr1_2:8544882-8544901 Msa0054000:intron 35.0%
TGAAGAATCCCTACAACAAT+GGG - chr1_2:8544883-8544902 Msa0054000:intron 35.0%
TCACTATGTGCTATCAAGTT+AGG - chr1_2:8545307-8545326 Msa0054000:intron 35.0%
TGATACGTTCAGCATTAACA+TGG - chr1_2:8545415-8545434 Msa0054000:intron 35.0%
! AGACTAGTGATTTGAGACAA+GGG + chr1_2:8545506-8545525 None:intergenic 35.0%
! AAGACTAGTGATTTGAGACA+AGG + chr1_2:8545507-8545526 None:intergenic 35.0%
! TGTTAGTATTTTGTTGAGGG+TGG - chr1_2:8545626-8545645 Msa0054000:intron 35.0%
AGGAATGATAAGGAGATTGA+GGG + chr1_2:8545660-8545679 None:intergenic 35.0%
AGTTTAGGAGAGGAATGATA+AGG + chr1_2:8545670-8545689 None:intergenic 35.0%
!! TGATAATGGCCAACAGTTAA+TGG - chr1_2:8545809-8545828 Msa0054000:intron 35.0%
CTGAATCCTTCTATCATCAA+TGG + chr1_2:8546052-8546071 None:intergenic 35.0%
! CATTGATGATAGAAGGATTC+AGG - chr1_2:8546050-8546069 Msa0054000:intron 35.0%
ATGATAGAAGGATTCAGGAA+GGG - chr1_2:8546055-8546074 Msa0054000:intron 35.0%
ATCACTTATTCAATCCCAGT+AGG + chr1_2:8546235-8546254 None:intergenic 35.0%
TGAACTGACATTTCATTTGG+AGG + chr1_2:8546295-8546314 None:intergenic 35.0%
ACAGAAGCAATATTGAACAG+AGG + chr1_2:8546323-8546342 None:intergenic 35.0%
TGCTGACATTCTTATATGGA+TGG + chr1_2:8546460-8546479 None:intergenic 35.0%
GACATTGGAGAAAACTCTAA+TGG - chr1_2:8546687-8546706 Msa0054000:CDS 35.0%
CATTGGAGAAAACTCTAATG+GGG - chr1_2:8546689-8546708 Msa0054000:CDS 35.0%
ATAGAAACTCATCAAACGTG+CGG + chr1_2:8546958-8546977 None:intergenic 35.0%
! GAAATTCTATGTGGCACTTT+TGG - chr1_2:8547031-8547050 Msa0054000:five_prime_UTR 35.0%
TTTCATGTCTGACGTGTGTT+TGG + chr1_2:8541064-8541083 None:intergenic 40.0%
TCTAGGTACACACGAAACTA+CGG + chr1_2:8541109-8541128 None:intergenic 40.0%
TTGTGTGTTACCACTTGCAA+CGG + chr1_2:8541203-8541222 None:intergenic 40.0%
GGTAACACACAACACAACAA+TGG - chr1_2:8541211-8541230 Msa0054000:three_prime_UTR 40.0%
! ACTTTTGCTTCTCTTTCGAC+TGG - chr1_2:8541578-8541597 Msa0054000:intron 40.0%
CCATAAATCGAACTCAAGTC+AGG + chr1_2:8541776-8541795 None:intergenic 40.0%
! CCTGACTTGAGTTCGATTTA+TGG - chr1_2:8541773-8541792 Msa0054000:intron 40.0%
ACTTGAGTTCGATTTATGGG+TGG - chr1_2:8541777-8541796 Msa0054000:intron 40.0%
GCCATACTTTCCTTACCTTT+CGG - chr1_2:8541811-8541830 Msa0054000:three_prime_UTR 40.0%
CAACCGTAGTGAACTTGATT+TGG + chr1_2:8542065-8542084 None:intergenic 40.0%
CAAATCAAGTTCACTACGGT+TGG - chr1_2:8542063-8542082 Msa0054000:intron 40.0%
CAGATAGACTTGAGTTCGAT+TGG - chr1_2:8542124-8542143 Msa0054000:intron 40.0%
TTAGCAGAACCCATTATCGA+AGG - chr1_2:8542196-8542215 Msa0054000:intron 40.0%
TAGCAGAACCCATTATCGAA+GGG - chr1_2:8542197-8542216 Msa0054000:intron 40.0%
!! TTTTCATCTAAGGCCCTGTT+TGG + chr1_2:8542458-8542477 None:intergenic 40.0%
AGTCGCTGTCATTATAGTCT+CGG - chr1_2:8542911-8542930 Msa0054000:intron 40.0%
TGACATTTCCTCACCCATTT+AGG - chr1_2:8543019-8543038 Msa0054000:intron 40.0%
GACATTTCCTCACCCATTTA+GGG - chr1_2:8543020-8543039 Msa0054000:intron 40.0%
! TTTTAGTCCCTAAATGGGTG+AGG + chr1_2:8543030-8543049 None:intergenic 40.0%
AAAGCTATGAAGCAGAGACA+TGG - chr1_2:8543059-8543078 Msa0054000:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG - chr1_2:8543150-8543169 Msa0054000:CDS 40.0%
ATCGGCAATGTTGTATGGTA+CGG - chr1_2:8543302-8543321 Msa0054000:CDS 40.0%
GATGAGTGGTAAGACTAGAT+AGG - chr1_2:8543392-8543411 Msa0054000:CDS 40.0%
GTGGTAAGACTAGATAGGAT+AGG - chr1_2:8543397-8543416 Msa0054000:CDS 40.0%
TGACACCATTAGAGAAAGAG+TGG - chr1_2:8543428-8543447 Msa0054000:CDS 40.0%
GACACCATTAGAGAAAGAGT+GGG - chr1_2:8543429-8543448 Msa0054000:CDS 40.0%
ACACCATTAGAGAAAGAGTG+GGG - chr1_2:8543430-8543449 Msa0054000:CDS 40.0%
GGTAGCACCTATAGAAAAGT+TGG - chr1_2:8543452-8543471 Msa0054000:CDS 40.0%
AGCACCTATAGAAAAGTTGG+TGG - chr1_2:8543455-8543474 Msa0054000:CDS 40.0%
TGGTGGAAAATAGGCTTAGA+TGG - chr1_2:8543472-8543491 Msa0054000:CDS 40.0%
AGATCAAATAGAGGAGAGTC+AGG - chr1_2:8543542-8543561 Msa0054000:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_2:8543558-8543577 Msa0054000:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr1_2:8543617-8543636 Msa0054000:intron 40.0%
TTACACGACATCAACCTATG+TGG + chr1_2:8543777-8543796 None:intergenic 40.0%
GCTCAGATGATCCATCAAAA+TGG - chr1_2:8544004-8544023 Msa0054000:CDS 40.0%
!! ACACTCTTTGGCCATTTTGA+TGG + chr1_2:8544018-8544037 None:intergenic 40.0%
CCAACATCAACTACACTCTT+TGG + chr1_2:8544030-8544049 None:intergenic 40.0%
! CCAAAGAGTGTAGTTGATGT+TGG - chr1_2:8544027-8544046 Msa0054000:CDS 40.0%
ACAACTTGCCCCAAATTTCT+TGG + chr1_2:8544085-8544104 None:intergenic 40.0%
! AAATTTGGGGCAAGTTGTGT+AGG - chr1_2:8544087-8544106 Msa0054000:intron 40.0%
TAGCTCTTTCAGCTTGAACA+GGG + chr1_2:8544125-8544144 None:intergenic 40.0%
! TTAGCTCTTTCAGCTTGAAC+AGG + chr1_2:8544126-8544145 None:intergenic 40.0%
!! TGCTCAAGGATTAGCTGATA+AGG - chr1_2:8544158-8544177 Msa0054000:intron 40.0%
! TGATACGTGTTTTCTATCGG+AGG + chr1_2:8544347-8544366 None:intergenic 40.0%
! ATTAGGACCTTCGGTTTGTT+AGG + chr1_2:8544659-8544678 None:intergenic 40.0%
GTGAGACGGCAAAAGAAATT+AGG + chr1_2:8544676-8544695 None:intergenic 40.0%
!! AGTTTGTTGGTGAGTTAGCT+CGG - chr1_2:8544798-8544817 Msa0054000:intron 40.0%
!! ACTATTATTATGGTGCCACC+CGG + chr1_2:8544833-8544852 None:intergenic 40.0%
TGTTGTAGGGATTCTTCATC+CGG + chr1_2:8544881-8544900 None:intergenic 40.0%
ATCCTTCTCCCATTGTTGTA+GGG + chr1_2:8544894-8544913 None:intergenic 40.0%
ATTAACTACCTGAAGGGACA+TGG + chr1_2:8544993-8545012 None:intergenic 40.0%
AGGACATCAAATCAGCAGAT+TGG - chr1_2:8545361-8545380 Msa0054000:intron 40.0%
ACGTTCAGCATTAACATGGA+AGG - chr1_2:8545419-8545438 Msa0054000:intron 40.0%
CGTTCAGCATTAACATGGAA+GGG - chr1_2:8545420-8545439 Msa0054000:intron 40.0%
! TTCACCTCAATTTTGCGAAG+TGG - chr1_2:8545444-8545463 Msa0054000:intron 40.0%
CTTACCACTTCGCAAAATTG+AGG + chr1_2:8545451-8545470 None:intergenic 40.0%
ACGTGACACTCAATATAGGA+CGG + chr1_2:8545542-8545561 None:intergenic 40.0%
GCTAACGTGACACTCAATAT+AGG + chr1_2:8545546-8545565 None:intergenic 40.0%
TTGAGTGTCACGTTAGCAAA+AGG - chr1_2:8545549-8545568 Msa0054000:intron 40.0%
GAGGAATGATAAGGAGATTG+AGG + chr1_2:8545661-8545680 None:intergenic 40.0%
!! ATAAGGTTGGCTTGGTAGTT+GGG + chr1_2:8545699-8545718 None:intergenic 40.0%
!! TATAAGGTTGGCTTGGTAGT+TGG + chr1_2:8545700-8545719 None:intergenic 40.0%
! ACGGATATATAAGGTTGGCT+TGG + chr1_2:8545707-8545726 None:intergenic 40.0%
GCAACACGGATATATAAGGT+TGG + chr1_2:8545712-8545731 None:intergenic 40.0%
! GCTATGCCATTGATGATAGA+AGG - chr1_2:8546043-8546062 Msa0054000:intron 40.0%
GATGATAGAAGGATTCAGGA+AGG - chr1_2:8546054-8546073 Msa0054000:intron 40.0%
AGGCTTTCGACATGTGATAA+TGG + chr1_2:8546095-8546114 None:intergenic 40.0%
! TGTCGTTGACTAATCTCAGT+TGG - chr1_2:8546383-8546402 Msa0054000:intron 40.0%
! CTTGATTGGCCACCTTTAAT+GGG - chr1_2:8546410-8546429 Msa0054000:intron 40.0%
AGAATGGGAGATCCCATTAA+AGG + chr1_2:8546425-8546444 None:intergenic 40.0%
TAACATGTTCTTGGCCATTG+TGG - chr1_2:8546800-8546819 Msa0054000:CDS 40.0%
TAGGTGTAGGACGCTATGAT+CGG + chr1_2:8540958-8540977 None:intergenic 45.0%
TGTCTGACGTGTGTTTGGTT+TGG + chr1_2:8541059-8541078 None:intergenic 45.0%
! ATAGTATCTCTGTGGTGCTG+AGG + chr1_2:8541287-8541306 None:intergenic 45.0%
! GAAAGAAGCGATGGTGGTAA+TGG - chr1_2:8541379-8541398 Msa0054000:intron 45.0%
TGGGGTGATCATATGCATCA+TGG - chr1_2:8541479-8541498 Msa0054000:intron 45.0%
GGTTCGAATTGGACTCAAAG+TGG - chr1_2:8541714-8541733 Msa0054000:intron 45.0%
GCCGAAAGGTAAGGAAAGTA+TGG + chr1_2:8541815-8541834 None:intergenic 45.0%
GAAAAAGGGCCCTAGTAATC+TGG + chr1_2:8541844-8541863 None:intergenic 45.0%
! AGGGCCCTTTTTCTGATAAC+CGG - chr1_2:8541851-8541870 Msa0054000:three_prime_UTR 45.0%
CGCTCCGGTTATCAGAAAAA+GGG + chr1_2:8541858-8541877 None:intergenic 45.0%
ACGCTCCGGTTATCAGAAAA+AGG + chr1_2:8541859-8541878 None:intergenic 45.0%
GGTTCTGCTAATCCAGAGTT+CGG + chr1_2:8542187-8542206 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG - chr1_2:8543193-8543212 Msa0054000:CDS 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr1_2:8543202-8543221 Msa0054000:CDS 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - chr1_2:8543216-8543235 Msa0054000:CDS 45.0%
CTTATCGCACAAAACACCTG+AGG + chr1_2:8543235-8543254 None:intergenic 45.0%
GTCAGATCGGCAATGTTGTA+TGG - chr1_2:8543297-8543316 Msa0054000:CDS 45.0%
CACTTACTTTCCTCTCGTGT+TGG + chr1_2:8543347-8543366 None:intergenic 45.0%
CGAGAGGAAAGTAAGTGTAG+CGG - chr1_2:8543350-8543369 Msa0054000:CDS 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - chr1_2:8543358-8543377 Msa0054000:CDS 45.0%
AGGATGTTGTGTTGGATGAG+TGG - chr1_2:8543378-8543397 Msa0054000:CDS 45.0%
CACCATTAGAGAAAGAGTGG+GGG - chr1_2:8543431-8543450 Msa0054000:CDS 45.0%
TACCCCCACTCTTTCTCTAA+TGG + chr1_2:8543436-8543455 None:intergenic 45.0%
CTTCTAACAACGGCATCTAC+AGG + chr1_2:8543519-8543538 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_2:8543552-8543571 Msa0054000:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_2:8543685-8543704 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_2:8543686-8543705 None:intergenic 45.0%
! AGTGTAGTTGATGTTGGGTG+TGG - chr1_2:8544033-8544052 Msa0054000:CDS 45.0%
TTGATGTTGGGTGTGGCATA+GGG - chr1_2:8544040-8544059 Msa0054000:CDS 45.0%
AGGTACCTGGCCAAGAAATT+TGG - chr1_2:8544072-8544091 Msa0054000:intron 45.0%
GGTACCTGGCCAAGAAATTT+GGG - chr1_2:8544073-8544092 Msa0054000:intron 45.0%
GTACCTGGCCAAGAAATTTG+GGG - chr1_2:8544074-8544093 Msa0054000:intron 45.0%
AGCTGAAAGAGCTAATGCTC+TGG - chr1_2:8544131-8544150 Msa0054000:intron 45.0%
! TAGAGCGTCAGCAACTTGAA+AGG + chr1_2:8544573-8544592 None:intergenic 45.0%
CTAGAACAACCATTCCCTGA+CGG - chr1_2:8544590-8544609 Msa0054000:intron 45.0%
TTGACCACACTAGATCAAGC+TGG + chr1_2:8544616-8544635 None:intergenic 45.0%
GCTTGATCTAGTGTGGTCAA+TGG - chr1_2:8544616-8544635 Msa0054000:intron 45.0%
GCATATGCCTAACAAACCGA+AGG - chr1_2:8544649-8544668 Msa0054000:intron 45.0%
AGTGCAGTATGCAAGTGAGA+CGG + chr1_2:8544690-8544709 None:intergenic 45.0%
! GTTTGTTGGTGAGTTAGCTC+GGG - chr1_2:8544799-8544818 Msa0054000:intron 45.0%
GTTGTAGGGATTCTTCATCC+GGG + chr1_2:8544880-8544899 None:intergenic 45.0%
ATCCCTACAACAATGGGAGA+AGG - chr1_2:8544889-8544908 Msa0054000:intron 45.0%
GATCCTTCTCCCATTGTTGT+AGG + chr1_2:8544895-8544914 None:intergenic 45.0%
ACTTGAAACCATGTCCCTTC+AGG - chr1_2:8544982-8545001 Msa0054000:intron 45.0%
! CTCCCTTTGTTGCTCCATTT+TGG - chr1_2:8545385-8545404 Msa0054000:intron 45.0%
GGCCAAAATGGAGCAACAAA+GGG + chr1_2:8545390-8545409 None:intergenic 45.0%
TGGCCAAAATGGAGCAACAA+AGG + chr1_2:8545391-8545410 None:intergenic 45.0%
AATGCTGAACGTATCACTGC+TGG + chr1_2:8545411-8545430 None:intergenic 45.0%
AATCCCAGTAGGATCTGACA+TGG + chr1_2:8546224-8546243 None:intergenic 45.0%
TCTCAGTTGGAGAGCTTGAT+TGG - chr1_2:8546396-8546415 Msa0054000:intron 45.0%
! GCTTGATTGGCCACCTTTAA+TGG - chr1_2:8546409-8546428 Msa0054000:intron 45.0%
ATGGGAGATCCCATTAAAGG+TGG + chr1_2:8546422-8546441 None:intergenic 45.0%
GGTCACAATGTGTACAACCA+GGG + chr1_2:8546600-8546619 None:intergenic 45.0%
AGGTCACAATGTGTACAACC+AGG + chr1_2:8546601-8546620 None:intergenic 45.0%
! TGTAGCACTGGAGTATGATG+TGG - chr1_2:8546763-8546782 Msa0054000:CDS 45.0%
ATGTTCTTGGCCATTGTGGA+TGG - chr1_2:8546804-8546823 Msa0054000:CDS 45.0%
CTTTCACAGTAGAAAGCCTG+TGG + chr1_2:8546903-8546922 None:intergenic 45.0%
!!! TCATTATTTAAAATTATTAT+TGG - chr1_2:8544427-8544446 Msa0054000:intron 5.0%
AGGGTCGTTGCGTCTATCAA+TGG - chr1_2:8541349-8541368 Msa0054000:three_prime_UTR 50.0%
GTCGTTGCGTCTATCAATGG+CGG - chr1_2:8541352-8541371 Msa0054000:three_prime_UTR 50.0%
! TAATCTGGAGCTCAGCCGAA+AGG + chr1_2:8541829-8541848 None:intergenic 50.0%
GGCTGAGCTCCAGATTACTA+GGG - chr1_2:8541832-8541851 Msa0054000:three_prime_UTR 50.0%
TCACTACGGTTGGACTCAAG+TGG - chr1_2:8542073-8542092 Msa0054000:intron 50.0%
CTTACTGTCTAGCCGAACTC+TGG - chr1_2:8542172-8542191 Msa0054000:intron 50.0%
TGAGTCTTCGAGTGTGCCTT+TGG + chr1_2:8542956-8542975 None:intergenic 50.0%
TCCAACTTTCACCTCGTCGT+GGG + chr1_2:8543091-8543110 None:intergenic 50.0%
CTATCGGACAGCAGTCAGAT+CGG - chr1_2:8543284-8543303 Msa0054000:CDS 50.0%
TGTTGTATGGTACGGAGTGC+TGG - chr1_2:8543310-8543329 Msa0054000:CDS 50.0%
! GTTGTATGGTACGGAGTGCT+GGG - chr1_2:8543311-8543330 Msa0054000:CDS 50.0%
CGGAGATGAGGATGTTGTGT+TGG - chr1_2:8543370-8543389 Msa0054000:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_2:8543681-8543700 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_2:8543687-8543706 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_2:8543684-8543703 Msa0054000:intron 50.0%
GTTGATGTTGGGTGTGGCAT+AGG - chr1_2:8544039-8544058 Msa0054000:CDS 50.0%
TGATGTTGGGTGTGGCATAG+GGG - chr1_2:8544041-8544060 Msa0054000:CDS 50.0%
TTGCCCCAAATTTCTTGGCC+AGG + chr1_2:8544080-8544099 None:intergenic 50.0%
GTCTGACTGCAACGTGATAC+TGG - chr1_2:8544379-8544398 Msa0054000:intron 50.0%
TATGTCAGTGCTTCATCGCG+TGG - chr1_2:8544494-8544513 Msa0054000:intron 50.0%
CTAGTGTGGTCAATGGAGAG+CGG - chr1_2:8544623-8544642 Msa0054000:intron 50.0%
CGTATCACTGCTGGCCAAAA+TGG + chr1_2:8545402-8545421 None:intergenic 50.0%
TCGAAAGCCTGAAAACGCAG+AGG - chr1_2:8546105-8546124 Msa0054000:intron 50.0%
CGAAAGCCTGAAAACGCAGA+GGG - chr1_2:8546106-8546125 Msa0054000:intron 50.0%
! CATTGACCCTCTGCGTTTTC+AGG + chr1_2:8546115-8546134 None:intergenic 50.0%
TCTGCCATGTCAGATCCTAC+TGG - chr1_2:8546217-8546236 Msa0054000:intron 50.0%
CTGCCATGTCAGATCCTACT+GGG - chr1_2:8546218-8546237 Msa0054000:intron 50.0%
AGTTTGTACACACTGTGCCC+TGG - chr1_2:8546580-8546599 Msa0054000:CDS 50.0%
! AGCACTGGAGTATGATGTGG+CGG - chr1_2:8546766-8546785 Msa0054000:CDS 50.0%
!! TGGCCATTGTGGATGGATTG+TGG - chr1_2:8546811-8546830 Msa0054000:CDS 50.0%
!! GGCCATTGTGGATGGATTGT+GGG - chr1_2:8546812-8546831 Msa0054000:CDS 50.0%
!! GCCATTGTGGATGGATTGTG+GGG - chr1_2:8546813-8546832 Msa0054000:CDS 50.0%
ACCCCACAATCCATCCACAA+TGG + chr1_2:8546817-8546836 None:intergenic 50.0%
TTCCACATCCATTCACCGAC+CGG - chr1_2:8546874-8546893 Msa0054000:five_prime_UTR 50.0%
GTTGCGTCTATCAATGGCGG+CGG - chr1_2:8541355-8541374 Msa0054000:three_prime_UTR 55.0%
TGGAGCTCAGCCGAAAGGTA+AGG + chr1_2:8541824-8541843 None:intergenic 55.0%
CGGCTGAGCTCCAGATTACT+AGG - chr1_2:8541831-8541850 Msa0054000:three_prime_UTR 55.0%
CATGGACATTTCCCACGACG+AGG - chr1_2:8543077-8543096 Msa0054000:CDS 55.0%
TCCCACGACGAGGTGAAAGT+TGG - chr1_2:8543087-8543106 Msa0054000:CDS 55.0%
CTCCAACTTTCACCTCGTCG+TGG + chr1_2:8543092-8543111 None:intergenic 55.0%
CGGTTAAGAGCCAACACGAG+AGG - chr1_2:8543334-8543353 Msa0054000:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_2:8543673-8543692 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_2:8543672-8543691 Msa0054000:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_2:8543673-8543692 Msa0054000:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_2:8543679-8543698 Msa0054000:intron 55.0%
GATGTTGGGTGTGGCATAGG+GGG - chr1_2:8544042-8544061 Msa0054000:CDS 55.0%
GTGGCATAGGGGGAAGTTCA+AGG - chr1_2:8544052-8544071 Msa0054000:intron 55.0%
! AGGGGGAAGTTCAAGGTACC+TGG - chr1_2:8544059-8544078 Msa0054000:intron 55.0%
AATGCTCTGGCTGCTGCTCA+AGG - chr1_2:8544144-8544163 Msa0054000:intron 55.0%
CTAGATCAAGCTGGCCGTCA+GGG + chr1_2:8544607-8544626 None:intergenic 55.0%
ACTAGATCAAGCTGGCCGTC+AGG + chr1_2:8544608-8544627 None:intergenic 55.0%
ACGGCCAGCTTGATCTAGTG+TGG - chr1_2:8544609-8544628 Msa0054000:intron 55.0%
GTGTCATAGGGATCTTCGCC+CGG - chr1_2:8544859-8544878 Msa0054000:intron 55.0%
GTAGTTGGGTGGGGGAGTTT+AGG + chr1_2:8545685-8545704 None:intergenic 55.0%
!! TTGGCTTGGTAGTTGGGTGG+GGG + chr1_2:8545693-8545712 None:intergenic 55.0%
!! GTTGGCTTGGTAGTTGGGTG+GGG + chr1_2:8545694-8545713 None:intergenic 55.0%
!! GGTTGGCTTGGTAGTTGGGT+GGG + chr1_2:8545695-8545714 None:intergenic 55.0%
!! AGGTTGGCTTGGTAGTTGGG+TGG + chr1_2:8545696-8545715 None:intergenic 55.0%
GACGCTCGATATGTGACCGA+AGG - chr1_2:8545918-8545937 Msa0054000:intron 55.0%
AGTAGAAAGCCTGTGGACGC+CGG + chr1_2:8546896-8546915 None:intergenic 55.0%
AGCGCGTGTACCGTTGCAAG+TGG - chr1_2:8541190-8541209 Msa0054000:three_prime_UTR 60.0%
GGCGGTGAAAGAAGCGATGG+TGG - chr1_2:8541373-8541392 Msa0054000:intron 60.0%
!! GTATGGTACGGAGTGCTGGG+CGG - chr1_2:8543314-8543333 Msa0054000:CDS 60.0%
!! CGGAGGTGTCAGTGCTGCAT+AGG + chr1_2:8544330-8544349 None:intergenic 60.0%
TCAAGCTGGCCGTCAGGGAA+TGG + chr1_2:8544602-8544621 None:intergenic 60.0%
GTTAGCTCGGGTAGCAGCAC+CGG - chr1_2:8544811-8544830 Msa0054000:intron 60.0%
TTAGCTCGGGTAGCAGCACC+GGG - chr1_2:8544812-8544831 Msa0054000:intron 60.0%
TGGGTGGGGGAGTTTAGGAG+AGG + chr1_2:8545680-8545699 None:intergenic 60.0%
GGCGGCGGTGAAAGAAGCGA+TGG - chr1_2:8541370-8541389 Msa0054000:intron 65.0%
CGCCGGTCGGTGAATGGATG+TGG + chr1_2:8546879-8546898 None:intergenic 65.0%
TGTGGACGCCGGTCGGTGAA+TGG + chr1_2:8546885-8546904 None:intergenic 65.0%
ATTCACCGACCGGCGTCCAC+AGG - chr1_2:8546884-8546903 Msa0054000:five_prime_UTR 65.0%
GAAAGCCTGTGGACGCCGGT+CGG + chr1_2:8546892-8546911 None:intergenic 65.0%
! GCTCGGGTAGCAGCACCGGG+TGG - chr1_2:8544815-8544834 Msa0054000:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8540955 8547120 8540955 ID=Msa0054000;Name=Msa0054000
chr1_2 mRNA 8540955 8547120 8540955 ID=Msa0054000-mRNA-1;Parent=Msa0054000;Name=Msa0054000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=275|1|0.83|1|0.8|0.66|6|575|399
chr1_2 exon 8540955 8541381 8540955 ID=Msa0054000-mRNA-1:exon:3064;Parent=Msa0054000-mRNA-1
chr1_2 exon 8541792 8542058 8541792 ID=Msa0054000-mRNA-1:exon:3063;Parent=Msa0054000-mRNA-1
chr1_2 exon 8542610 8542712 8542610 ID=Msa0054000-mRNA-1:exon:3062;Parent=Msa0054000-mRNA-1
chr1_2 exon 8543072 8543509 8543072 ID=Msa0054000-mRNA-1:exon:3061;Parent=Msa0054000-mRNA-1
chr1_2 exon 8543896 8544065 8543896 ID=Msa0054000-mRNA-1:exon:3060;Parent=Msa0054000-mRNA-1
chr1_2 exon 8546476 8547120 8546476 ID=Msa0054000-mRNA-1:exon:3059;Parent=Msa0054000-mRNA-1
chr1_2 five_prime_UTR 8546846 8547120 8546846 ID=Msa0054000-mRNA-1:five_prime_utr;Parent=Msa0054000-mRNA-1
chr1_2 CDS 8546476 8546845 8546476 ID=Msa0054000-mRNA-1:cds;Parent=Msa0054000-mRNA-1
chr1_2 CDS 8543896 8544065 8543896 ID=Msa0054000-mRNA-1:cds;Parent=Msa0054000-mRNA-1
chr1_2 CDS 8543072 8543509 8543072 ID=Msa0054000-mRNA-1:cds;Parent=Msa0054000-mRNA-1
chr1_2 CDS 8542610 8542712 8542610 ID=Msa0054000-mRNA-1:cds;Parent=Msa0054000-mRNA-1
chr1_2 CDS 8541940 8542058 8541940 ID=Msa0054000-mRNA-1:cds;Parent=Msa0054000-mRNA-1
chr1_2 three_prime_UTR 8541792 8541939 8541792 ID=Msa0054000-mRNA-1:three_prime_utr;Parent=Msa0054000-mRNA-1
chr1_2 three_prime_UTR 8540955 8541381 8540955 ID=Msa0054000-mRNA-1:three_prime_utr;Parent=Msa0054000-mRNA-1
Gene Sequence

>Msa0054000

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACACACACATTTCCTCAGCACCACAGAGATACTATCATTACTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCGTTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGCTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGCTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCGAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCTCGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTCGCCCGGATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATTTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAACGCAGAGGGTCAATGA
Protein sequence

>Msa0054000

MVTTARISSSLLHCTHTFPQHHRDTIITTTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAAAQGLADKVSFQVADALEQPFPDGQLDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLRPDEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*