Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055050 | XP_013465818.1 | 90.000 | 240 | 5 | 2 | 1 | 240 | 1 | 221 | 2.66e-151 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055050 | sp|Q9LE16|BRX11_ARATH | 70.124 | 241 | 48 | 4 | 1 | 240 | 1 | 218 | 5.66e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055050 | A0A072VCY8 | 90.000 | 240 | 5 | 2 | 1 | 240 | 1 | 221 | 1.27e-151 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006430 | Msa0055050 | 0.811013 | 8.658051e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055050 | MtrunA17_Chr1g0149671 | 90.000 | 240 | 5 | 2 | 1 | 240 | 1 | 221 | 2.45e-155 | 434 |
| Msa0055050 | MtrunA17_Chr7g0242911 | 88.333 | 240 | 7 | 2 | 1 | 240 | 1 | 219 | 7.24e-152 | 425 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055050 | AT3G15460.1 | 70.124 | 241 | 48 | 4 | 1 | 240 | 1 | 218 | 5.76e-117 | 337 |
| Msa0055050 | AT1G52930.1 | 69.295 | 241 | 54 | 3 | 1 | 240 | 1 | 222 | 3.75e-116 | 335 |
Find 67 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCTTCTATGCACTATTT+TGG | 0.160931 | 1_2:+9856859 | Msa0055050:CDS |
| TTTCTCTTCCCCATGTTATT+TGG | 0.215344 | 1_2:-9855283 | None:intergenic |
| GAGATGCTGTTACAAGTATT+TGG | 0.225546 | 1_2:+9856830 | Msa0055050:CDS |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 1_2:+9857396 | Msa0055050:CDS |
| GCTCTAGGCGTATTGTTTAC+AGG | 0.279178 | 1_2:+9855482 | Msa0055050:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 1_2:+9856728 | Msa0055050:CDS |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 1_2:+9855363 | Msa0055050:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 1_2:-9857409 | None:intergenic |
| ATCGCCGGCTATGGAGGTTT+TGG | 0.338605 | 1_2:-9854541 | None:intergenic |
| CTTACTGGGAACCACCTAAA+AGG | 0.340476 | 1_2:+9856743 | Msa0055050:CDS |
| AAACACAAACCTGGTAATTT+CGG | 0.347713 | 1_2:-9857421 | None:intergenic |
| TGAGAATGAAGTTGAAGTTA+AGG | 0.350478 | 1_2:+9855408 | Msa0055050:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 1_2:-9855445 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 1_2:+9855434 | Msa0055050:CDS |
| GGAAAGGCTTGGCCTTTCTA+TGG | 0.363818 | 1_2:-9857352 | None:intergenic |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 1_2:+9855860 | Msa0055050:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 1_2:-9855358 | None:intergenic |
| AATTTAACAGACGGGCCGTT+GGG | 0.387269 | 1_2:-9856503 | None:intergenic |
| CCGACATTTGATGTTGAACT+TGG | 0.401652 | 1_2:+9855833 | Msa0055050:CDS |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 1_2:+9855453 | Msa0055050:CDS |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 1_2:+9855324 | Msa0055050:CDS |
| TTGGCCTTTCTATGGTCCTT+CGG | 0.429083 | 1_2:-9857344 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 1_2:-9855919 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 1_2:-9855378 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 1_2:+9856468 | Msa0055050:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.486922 | 1_2:-9856773 | None:intergenic |
| AGGTGGATAATCGCCGGCTA+TGG | 0.497615 | 1_2:-9854550 | None:intergenic |
| TGGAAAACGGAATCAAAGAA+AGG | 0.501511 | 1_2:-9854508 | None:intergenic |
| GCAGAGGAAGGAGGTGAAGG+TGG | 0.505317 | 1_2:-9854567 | None:intergenic |
| TGATTTGTAGCCAAATAACA+TGG | 0.511138 | 1_2:+9855273 | Msa0055050:intron |
| ATTGCAGAGGAAGGAGGTGA+AGG | 0.516014 | 1_2:-9854570 | None:intergenic |
| AAATTTAACAGACGGGCCGT+TGG | 0.517299 | 1_2:-9856504 | None:intergenic |
| GCCACCAAAACCTCCATAGC+CGG | 0.519032 | 1_2:+9854537 | Msa0055050:five_prime_UTR |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 1_2:+9857412 | Msa0055050:CDS |
| GAAGTTGAAGTTAAGGAGAA+TGG | 0.527506 | 1_2:+9855415 | Msa0055050:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 1_2:-9855377 | None:intergenic |
| GGAAAACGGAATCAAAGAAA+GGG | 0.537513 | 1_2:-9854507 | None:intergenic |
| TGGTGGCGATGAATGGAAAA+CGG | 0.538494 | 1_2:-9854521 | None:intergenic |
| ATGAAAATGTCAAAAGAGGA+CGG | 0.546674 | 1_2:-9856769 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 1_2:-9855367 | None:intergenic |
| TGGAGGAATTGAAGCTTACT+GGG | 0.555656 | 1_2:+9856729 | Msa0055050:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 1_2:+9855297 | Msa0055050:CDS |
| TGGATAATCGCCGGCTATGG+AGG | 0.567956 | 1_2:-9854547 | None:intergenic |
| ACCTAGGTGATTGCAGAGGA+AGG | 0.568891 | 1_2:-9854579 | None:intergenic |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 1_2:+9856472 | Msa0055050:CDS |
| TGAAAATGTCAAAAGAGGAC+GGG | 0.576450 | 1_2:-9856768 | None:intergenic |
| ATTTAACAGACGGGCCGTTG+GGG | 0.581078 | 1_2:-9856502 | None:intergenic |
| GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 1_2:+9855891 | Msa0055050:CDS |
| AGGTGAAGGTGGATAATCGC+CGG | 0.593486 | 1_2:-9854556 | None:intergenic |
| TGCAAATGAAAACACAAACC+TGG | 0.597808 | 1_2:-9857430 | None:intergenic |
| AACACCGAAGGACCATAGAA+AGG | 0.600443 | 1_2:+9857340 | Msa0055050:CDS |
| AACATGGTCATGGAAAGGCT+TGG | 0.604292 | 1_2:-9857363 | None:intergenic |
| GATTTGTAGCCAAATAACAT+GGG | 0.607660 | 1_2:+9855274 | Msa0055050:intron |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 1_2:+9855309 | Msa0055050:CDS |
| TGCATACTGGAAATTGCTGA+AGG | 0.612381 | 1_2:+9856808 | Msa0055050:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.618112 | 1_2:+9856488 | Msa0055050:CDS |
| CTGCTTTCCAGTGCACACAA+TGG | 0.626669 | 1_2:+9856709 | Msa0055050:intron |
| CTTTCCAGTGCACACAATGG+AGG | 0.635931 | 1_2:+9856712 | Msa0055050:intron |
| CCAAGTTCAACATCAAATGT+CGG | 0.645758 | 1_2:-9855833 | None:intergenic |
| ATTTGTAGCCAAATAACATG+GGG | 0.646994 | 1_2:+9855275 | Msa0055050:intron |
| ATGCGAATTTCAGTGCAGGA+AGG | 0.662895 | 1_2:+9856448 | Msa0055050:intron |
| TCCTTCCTCTGCAATCACCT+AGG | 0.668735 | 1_2:+9854578 | Msa0055050:five_prime_UTR |
| CCAGATATTTGAAACACCGA+AGG | 0.677611 | 1_2:+9857328 | Msa0055050:intron |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 1_2:-9855916 | None:intergenic |
| TAGGTGATTGCAGAGGAAGG+AGG | 0.689100 | 1_2:-9854576 | None:intergenic |
| AGGTACCTAGGTGATTGCAG+AGG | 0.693878 | 1_2:-9854583 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 1_2:+9855353 | Msa0055050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACAACAAAATATATTT+GGG | - | chr1_2:9855522-9855541 | None:intergenic | 10.0% |
| !!! | TATTATTTTTTATGATATCA+AGG | + | chr1_2:9855973-9855992 | Msa0055050:intron | 10.0% |
| !!! | AATGTTATTTTGAACAAAAA+TGG | + | chr1_2:9854754-9854773 | Msa0055050:intron | 15.0% |
| !! | GTGAATAAAAATTAAACTTT+GGG | - | chr1_2:9855077-9855096 | None:intergenic | 15.0% |
| !! | AGTGAATAAAAATTAAACTT+TGG | - | chr1_2:9855078-9855097 | None:intergenic | 15.0% |
| !! | CAAATACAACAAAATATATT+TGG | - | chr1_2:9855523-9855542 | None:intergenic | 15.0% |
| !! | AATTTAAATTGAGTAGAATT+TGG | + | chr1_2:9857118-9857137 | Msa0055050:intron | 15.0% |
| !! | ATTTAAATTGAGTAGAATTT+GGG | + | chr1_2:9857119-9857138 | Msa0055050:intron | 15.0% |
| !! | TTTGAGAACTTATGAAAATA+AGG | + | chr1_2:9854945-9854964 | Msa0055050:intron | 20.0% |
| !! | TAACTGATAGAACATTAAAA+AGG | - | chr1_2:9855171-9855190 | None:intergenic | 20.0% |
| !! | CAGATTAAATTAATGTCAAA+TGG | + | chr1_2:9855660-9855679 | Msa0055050:intron | 20.0% |
| !!! | GGTTTATTAGTTTTTGAATA+TGG | + | chr1_2:9855784-9855803 | Msa0055050:intron | 20.0% |
| !! | ATTGATCATAAACTTATTAC+AGG | + | chr1_2:9855808-9855827 | Msa0055050:intron | 20.0% |
| !! | GAAAATTCATTGTTTGTTTA+TGG | + | chr1_2:9856055-9856074 | Msa0055050:intron | 20.0% |
| !!! | CGACACTTTAAAATTTAAAA+TGG | - | chr1_2:9856238-9856257 | None:intergenic | 20.0% |
| !! | ATACATAGAAAAACCAATTT+GGG | - | chr1_2:9856287-9856306 | None:intergenic | 20.0% |
| !! | AATACATAGAAAAACCAATT+TGG | - | chr1_2:9856288-9856307 | None:intergenic | 20.0% |
| !!! | CAGTTTACTTATTTTAAATC+TGG | + | chr1_2:9856312-9856331 | Msa0055050:intron | 20.0% |
| !! | TAACTAAAAATTTAACAGAC+GGG | - | chr1_2:9856514-9856533 | None:intergenic | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr1_2:9856515-9856534 | None:intergenic | 20.0% |
| !! | AATACTATATAATCATAGCA+AGG | - | chr1_2:9856593-9856612 | None:intergenic | 20.0% |
| !! | CTATGATTATATAGTATTCT+AGG | + | chr1_2:9856595-9856614 | Msa0055050:intron | 20.0% |
| !! | TAAAAAATAGAATTCAGAAC+TGG | - | chr1_2:9856630-9856649 | None:intergenic | 20.0% |
| !! | TAAAAGAGAAACTAGTAAAA+TGG | - | chr1_2:9856683-9856702 | None:intergenic | 20.0% |
| !!! | TATTTTGGATTCAAAAGTTA+AGG | + | chr1_2:9856874-9856893 | Msa0055050:CDS | 20.0% |
| !! | AAGTCTATAAATGTTATGTT+TGG | + | chr1_2:9857078-9857097 | Msa0055050:intron | 20.0% |
| ! | ATACATATATACAGTAACAG+CGG | - | chr1_2:9854684-9854703 | None:intergenic | 25.0% |
| !! | CTAAATCTTATCTTTTTCCA+TGG | - | chr1_2:9854880-9854899 | None:intergenic | 25.0% |
| ! | GTAATAACTCTTTACACTAA+CGG | + | chr1_2:9855206-9855225 | Msa0055050:intron | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | - | chr1_2:9855514-9855533 | None:intergenic | 25.0% |
| !!! | GAGTTTGGATTTGTTTATTT+TGG | + | chr1_2:9855562-9855581 | Msa0055050:intron | 25.0% |
| ! | TACAACTTAACTAAGTTGTT+AGG | - | chr1_2:9855597-9855616 | None:intergenic | 25.0% |
| !! | AACAACTTAGTTAAGTTGTA+AGG | + | chr1_2:9855597-9855616 | Msa0055050:intron | 25.0% |
| !! | ACAACTTAGTTAAGTTGTAA+GGG | + | chr1_2:9855598-9855617 | Msa0055050:intron | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | + | chr1_2:9855763-9855782 | Msa0055050:intron | 25.0% |
| ! | AACTAATAAACCGCAATAAA+AGG | - | chr1_2:9855776-9855795 | None:intergenic | 25.0% |
| !!! | TTCTTCGTGTTTATTTTTTG+AGG | + | chr1_2:9855950-9855969 | Msa0055050:CDS | 25.0% |
| ! | CTAATGCAAAATGTTATTGT+TGG | + | chr1_2:9856134-9856153 | Msa0055050:intron | 25.0% |
| ! | TTAAATGGAAAATGTTGTCT+CGG | - | chr1_2:9856341-9856360 | None:intergenic | 25.0% |
| ! | TCTATTCTATTTGTGACATT+TGG | + | chr1_2:9856398-9856417 | Msa0055050:intron | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr1_2:9856518-9856537 | Msa0055050:CDS | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr1_2:9856586-9856605 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr1_2:9856776-9856795 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr1_2:9856795-9856814 | Msa0055050:CDS | 25.0% |
| ! | TCAATAAAACCATCTTAGTT+TGG | + | chr1_2:9856902-9856921 | Msa0055050:intron | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | + | chr1_2:9857191-9857210 | Msa0055050:intron | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | + | chr1_2:9857192-9857211 | Msa0055050:intron | 25.0% |
| ! | CAATTGAGAAAACAAAAACA+TGG | - | chr1_2:9857382-9857401 | None:intergenic | 25.0% |
| TCTTACCTGAAGAAATCAAA+AGG | + | chr1_2:9854720-9854739 | Msa0055050:intron | 30.0% | |
| CTTACCTGAAGAAATCAAAA+GGG | + | chr1_2:9854721-9854740 | Msa0055050:intron | 30.0% | |
| ACATAAGATAAAACCCTGTT+TGG | + | chr1_2:9854818-9854837 | Msa0055050:intron | 30.0% | |
| CATAAGATAAAACCCTGTTT+GGG | + | chr1_2:9854819-9854838 | Msa0055050:intron | 30.0% | |
| ! | AAGTTTCTATGAGACTGTTT+TGG | - | chr1_2:9855016-9855035 | None:intergenic | 30.0% |
| AAATTAAACTTTGGGTCGTT+TGG | - | chr1_2:9855069-9855088 | None:intergenic | 30.0% | |
| ! | TGATTTGTAGCCAAATAACA+TGG | + | chr1_2:9855273-9855292 | Msa0055050:intron | 30.0% |
| GATTTGTAGCCAAATAACAT+GGG | + | chr1_2:9855274-9855293 | Msa0055050:intron | 30.0% | |
| ATTTGTAGCCAAATAACATG+GGG | + | chr1_2:9855275-9855294 | Msa0055050:intron | 30.0% | |
| TGAGAATGAAGTTGAAGTTA+AGG | + | chr1_2:9855408-9855427 | Msa0055050:CDS | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | + | chr1_2:9855891-9855910 | Msa0055050:CDS | 30.0% | |
| !!! | ATCTCTTTCCTTTTTTGTGA+TGG | + | chr1_2:9856172-9856191 | Msa0055050:intron | 30.0% |
| ATAGAAAAACCAATTTGGGA+GGG | - | chr1_2:9856283-9856302 | None:intergenic | 30.0% | |
| ! | TTTTCCATTTAATCTCGAGT+TGG | + | chr1_2:9856349-9856368 | Msa0055050:intron | 30.0% |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr1_2:9856472-9856491 | Msa0055050:CDS | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | - | chr1_2:9856540-9856559 | None:intergenic | 30.0% | |
| !! | CTCATCTGTTTGTTATCTTA+AGG | + | chr1_2:9856548-9856567 | Msa0055050:intron | 30.0% |
| ATGAAAATGTCAAAAGAGGA+CGG | - | chr1_2:9856772-9856791 | None:intergenic | 30.0% | |
| ! | TACTCTTCTATGCACTATTT+TGG | + | chr1_2:9856859-9856878 | Msa0055050:CDS | 30.0% |
| ! | ATAAAACCATCTTAGTTTGG+TGG | + | chr1_2:9856905-9856924 | Msa0055050:intron | 30.0% |
| !! | TTCACAATTTTCTCTGGTTT+TGG | + | chr1_2:9857159-9857178 | Msa0055050:intron | 30.0% |
| CCTATTCAAATACATAACTC+AGG | - | chr1_2:9857193-9857212 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | + | chr1_2:9857190-9857209 | Msa0055050:intron | 30.0% | |
| !!! | GTGCTTTTTTCTTTCTTTCT+TGG | + | chr1_2:9857241-9857260 | Msa0055050:intron | 30.0% |
| AGAAAACAAAAACATGGTCA+TGG | - | chr1_2:9857376-9857395 | None:intergenic | 30.0% | |
| !! | CAATTGTTGATGACCATATA+TGG | + | chr1_2:9857396-9857415 | Msa0055050:CDS | 30.0% |
| AAACACAAACCTGGTAATTT+CGG | - | chr1_2:9857424-9857443 | None:intergenic | 30.0% | |
| ! | GTTTGTGTTTTCATTTGCAA+TGG | + | chr1_2:9857434-9857453 | Msa0055050:CDS | 30.0% |
| GGAAAACGGAATCAAAGAAA+GGG | - | chr1_2:9854510-9854529 | None:intergenic | 35.0% | |
| TGGAAAACGGAATCAAAGAA+AGG | - | chr1_2:9854511-9854530 | None:intergenic | 35.0% | |
| !!! | ATGACCCTTTTGATTTCTTC+AGG | - | chr1_2:9854728-9854747 | None:intergenic | 35.0% |
| ! | GGCAAATTTTTGTAGCTAAG+TGG | + | chr1_2:9854775-9854794 | Msa0055050:intron | 35.0% |
| ATAAGCAGTTTACCCAAACA+GGG | - | chr1_2:9854834-9854853 | None:intergenic | 35.0% | |
| AATAAGCAGTTTACCCAAAC+AGG | - | chr1_2:9854835-9854854 | None:intergenic | 35.0% | |
| ! | CTATGTGTAAGCTATTTCCA+TGG | + | chr1_2:9854860-9854879 | Msa0055050:intron | 35.0% |
| CTTATGAATACATCAGAAGC+TGG | + | chr1_2:9854977-9854996 | Msa0055050:intron | 35.0% | |
| CTTCAAAAGTCACACATGAT+TGG | - | chr1_2:9855128-9855147 | None:intergenic | 35.0% | |
| TTTCTCTTCCCCATGTTATT+TGG | - | chr1_2:9855286-9855305 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTAAGGAGAA+TGG | + | chr1_2:9855415-9855434 | Msa0055050:CDS | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr1_2:9855448-9855467 | None:intergenic | 35.0% | |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr1_2:9855453-9855472 | Msa0055050:CDS | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr1_2:9855467-9855486 | Msa0055050:CDS | 35.0% |
| !!! | GTTTGTGCTTGTTTTGAGTT+TGG | + | chr1_2:9855547-9855566 | Msa0055050:intron | 35.0% |
| ! | GTTCTTTTACTGCACACAAA+GGG | - | chr1_2:9855705-9855724 | None:intergenic | 35.0% |
| ! | AGTTCTTTTACTGCACACAA+AGG | - | chr1_2:9855706-9855725 | None:intergenic | 35.0% |
| CCAAGTTCAACATCAAATGT+CGG | - | chr1_2:9855836-9855855 | None:intergenic | 35.0% | |
| ! | TTGTTGTCCTTTTTGCAATG+AGG | - | chr1_2:9855870-9855889 | None:intergenic | 35.0% |
| TCATTGCAAAAAGGACAACA+AGG | + | chr1_2:9855869-9855888 | Msa0055050:CDS | 35.0% | |
| GATGTGATCCATCACAAAAA+AGG | - | chr1_2:9856183-9856202 | None:intergenic | 35.0% | |
| TAGAAAAACCAATTTGGGAG+GGG | - | chr1_2:9856282-9856301 | None:intergenic | 35.0% | |
| CATAGAAAAACCAATTTGGG+AGG | - | chr1_2:9856284-9856303 | None:intergenic | 35.0% | |
| AACTCCAACTCGAGATTAAA+TGG | - | chr1_2:9856356-9856375 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr1_2:9856468-9856487 | Msa0055050:CDS | 35.0% | |
| AGAAACTAGTAAAATGGCCT+CGG | - | chr1_2:9856677-9856696 | None:intergenic | 35.0% | |
| TGAAAATGTCAAAAGAGGAC+GGG | - | chr1_2:9856771-9856790 | None:intergenic | 35.0% | |
| GAGATGCTGTTACAAGTATT+TGG | + | chr1_2:9856830-9856849 | Msa0055050:CDS | 35.0% | |
| TGTGAACAGGAATAAATGCT+TGG | - | chr1_2:9857145-9857164 | None:intergenic | 35.0% | |
| ! | TTCCTGTTCACAATTTTCTC+TGG | + | chr1_2:9857153-9857172 | Msa0055050:intron | 35.0% |
| AACCAGAGAAAATTGTGAAC+AGG | - | chr1_2:9857158-9857177 | None:intergenic | 35.0% | |
| TATGTATTTGAATAGGGGTG+TGG | + | chr1_2:9857197-9857216 | Msa0055050:intron | 35.0% | |
| ACAAAAACATGGTCATGGAA+AGG | - | chr1_2:9857371-9857390 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr1_2:9857412-9857431 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr1_2:9857412-9857431 | Msa0055050:CDS | 35.0% | |
| TGCAAATGAAAACACAAACC+TGG | - | chr1_2:9857433-9857452 | None:intergenic | 35.0% | |
| AGAAAACAGATGTCGAGAGA+AGG | - | chr1_2:9854610-9854629 | None:intergenic | 40.0% | |
| CATATATACAGTAACAGCGG+TGG | - | chr1_2:9854681-9854700 | None:intergenic | 40.0% | |
| AAACTTTGGGTCGTTTGGAT+TGG | - | chr1_2:9855064-9855083 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | + | chr1_2:9855297-9855316 | Msa0055050:CDS | 40.0% | |
| ! | GGAGCAACATCTTCCTTTTT+GGG | - | chr1_2:9855340-9855359 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | - | chr1_2:9855341-9855360 | None:intergenic | 40.0% |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr1_2:9855380-9855399 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr1_2:9855381-9855400 | None:intergenic | 40.0% | |
| CCGACATTTGATGTTGAACT+TGG | + | chr1_2:9855833-9855852 | Msa0055050:CDS | 40.0% | |
| ACTTGCTCGAGATTAAGAAC+TGG | - | chr1_2:9856379-9856398 | None:intergenic | 40.0% | |
| CTGAAATTCGCATACACAGA+AGG | - | chr1_2:9856441-9856460 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr1_2:9856728-9856747 | Msa0055050:CDS | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr1_2:9856729-9856748 | Msa0055050:CDS | 40.0% | |
| TGCATACTGGAAATTGCTGA+AGG | + | chr1_2:9856808-9856827 | Msa0055050:CDS | 40.0% | |
| ! | AAAGCACCACCAAACTAAGA+TGG | - | chr1_2:9856914-9856933 | None:intergenic | 40.0% |
| !! | ATCTTAGTTTGGTGGTGCTT+TGG | + | chr1_2:9856913-9856932 | Msa0055050:intron | 40.0% |
| !! | TCTTAGTTTGGTGGTGCTTT+GGG | + | chr1_2:9856914-9856933 | Msa0055050:intron | 40.0% |
| !! | CCTTCGGTGTTTCAAATATC+TGG | - | chr1_2:9857331-9857350 | None:intergenic | 40.0% |
| ! | CCAGATATTTGAAACACCGA+AGG | + | chr1_2:9857328-9857347 | Msa0055050:intron | 40.0% |
| ! | TGGTGGCGATGAATGGAAAA+CGG | - | chr1_2:9854524-9854543 | None:intergenic | 45.0% |
| AACAGATGTCGAGAGAAGGA+AGG | - | chr1_2:9854606-9854625 | None:intergenic | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr1_2:9855434-9855453 | Msa0055050:CDS | 45.0% | |
| ! | GCTCTAGGCGTATTGTTTAC+AGG | + | chr1_2:9855482-9855501 | Msa0055050:CDS | 45.0% |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr1_2:9855860-9855879 | Msa0055050:CDS | 45.0% | |
| CAATTTGGGAGGGGAAACAA+AGG | - | chr1_2:9856273-9856292 | None:intergenic | 45.0% | |
| ! | CTTTGTTTCCCCTCCCAAAT+TGG | + | chr1_2:9856271-9856290 | Msa0055050:intron | 45.0% |
| GTGTATGCGAATTTCAGTGC+AGG | + | chr1_2:9856444-9856463 | Msa0055050:intron | 45.0% | |
| ATGCGAATTTCAGTGCAGGA+AGG | + | chr1_2:9856448-9856467 | Msa0055050:intron | 45.0% | |
| AATTTAACAGACGGGCCGTT+GGG | - | chr1_2:9856506-9856525 | None:intergenic | 45.0% | |
| AAATTTAACAGACGGGCCGT+TGG | - | chr1_2:9856507-9856526 | None:intergenic | 45.0% | |
| AATTCCTCCATTGTGTGCAC+TGG | - | chr1_2:9856719-9856738 | None:intergenic | 45.0% | |
| CTTACTGGGAACCACCTAAA+AGG | + | chr1_2:9856743-9856762 | Msa0055050:CDS | 45.0% | |
| !! | CTTAGTTTGGTGGTGCTTTG+GGG | + | chr1_2:9856915-9856934 | Msa0055050:intron | 45.0% |
| !! | TTAGTTTGGTGGTGCTTTGG+GGG | + | chr1_2:9856916-9856935 | Msa0055050:intron | 45.0% |
| AACACCGAAGGACCATAGAA+AGG | + | chr1_2:9857340-9857359 | Msa0055050:CDS | 45.0% | |
| ! | TTGGCCTTTCTATGGTCCTT+CGG | - | chr1_2:9857347-9857366 | None:intergenic | 45.0% |
| AACATGGTCATGGAAAGGCT+TGG | - | chr1_2:9857366-9857385 | None:intergenic | 45.0% | |
| !!! | GAGGTTTTGGTGGCGATGAA+TGG | - | chr1_2:9854531-9854550 | None:intergenic | 50.0% |
| AGGTGAAGGTGGATAATCGC+CGG | - | chr1_2:9854559-9854578 | None:intergenic | 50.0% | |
| ATTGCAGAGGAAGGAGGTGA+AGG | - | chr1_2:9854573-9854592 | None:intergenic | 50.0% | |
| TAGGTGATTGCAGAGGAAGG+AGG | - | chr1_2:9854579-9854598 | None:intergenic | 50.0% | |
| TCCTTCCTCTGCAATCACCT+AGG | + | chr1_2:9854578-9854597 | Msa0055050:five_prime_UTR | 50.0% | |
| ACCTAGGTGATTGCAGAGGA+AGG | - | chr1_2:9854582-9854601 | None:intergenic | 50.0% | |
| AGGTACCTAGGTGATTGCAG+AGG | - | chr1_2:9854586-9854605 | None:intergenic | 50.0% | |
| !! | TCGAGAGAAGGAAGGTACCT+AGG | - | chr1_2:9854598-9854617 | None:intergenic | 50.0% |
| GAGCAACACAAGCATGCAAG+AGG | - | chr1_2:9854653-9854672 | None:intergenic | 50.0% | |
| AAGCGAAAAGGCTGAAGCTG+TGG | + | chr1_2:9855309-9855328 | Msa0055050:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr1_2:9855364-9855383 | Msa0055050:CDS | 50.0% |
| ! | CTGCACACAAAGGGCTTGTT+TGG | - | chr1_2:9855696-9855715 | None:intergenic | 50.0% |
| CTCAACAAGCTCGTTCAAGG+TGG | - | chr1_2:9855919-9855938 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | - | chr1_2:9855922-9855941 | None:intergenic | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr1_2:9856488-9856507 | Msa0055050:CDS | 50.0% | |
| ATTTAACAGACGGGCCGTTG+GGG | - | chr1_2:9856505-9856524 | None:intergenic | 50.0% | |
| TGTGCACTGGAAAGCAGTGA+AGG | - | chr1_2:9856706-9856725 | None:intergenic | 50.0% | |
| CTGCTTTCCAGTGCACACAA+TGG | + | chr1_2:9856709-9856728 | Msa0055050:intron | 50.0% | |
| CTTTCCAGTGCACACAATGG+AGG | + | chr1_2:9856712-9856731 | Msa0055050:intron | 50.0% | |
| ! | AAAGAGGACGGGAGCCTTTT+AGG | - | chr1_2:9856760-9856779 | None:intergenic | 50.0% |
| ! | GGAAAGGCTTGGCCTTTCTA+TGG | - | chr1_2:9857355-9857374 | None:intergenic | 50.0% |
| GCCACCAAAACCTCCATAGC+CGG | + | chr1_2:9854537-9854556 | Msa0055050:five_prime_UTR | 55.0% | |
| !! | ATCGCCGGCTATGGAGGTTT+TGG | - | chr1_2:9854544-9854563 | None:intergenic | 55.0% |
| ! | TGGATAATCGCCGGCTATGG+AGG | - | chr1_2:9854550-9854569 | None:intergenic | 55.0% |
| ! | AGGTGGATAATCGCCGGCTA+TGG | - | chr1_2:9854553-9854572 | None:intergenic | 55.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | + | chr1_2:9855324-9855343 | Msa0055050:CDS | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr1_2:9855353-9855372 | Msa0055050:CDS | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr1_2:9855363-9855382 | Msa0055050:CDS | 55.0% |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr1_2:9855370-9855389 | None:intergenic | 55.0% | |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr1_2:9855368-9855387 | Msa0055050:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr1_2:9855372-9855391 | Msa0055050:CDS | 55.0% |
| ACCGTCTCTCTTTCTCTCCG+AGG | + | chr1_2:9856657-9856676 | Msa0055050:intron | 55.0% | |
| GCCTCGGAGAGAAAGAGAGA+CGG | - | chr1_2:9856661-9856680 | None:intergenic | 55.0% | |
| !! | GCCGGCTATGGAGGTTTTGG+TGG | - | chr1_2:9854541-9854560 | None:intergenic | 60.0% |
| GCAGAGGAAGGAGGTGAAGG+TGG | - | chr1_2:9854570-9854589 | None:intergenic | 60.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr1_2:9855361-9855380 | None:intergenic | 60.0% |
| ! | GAGGACGGGAGCCTTTTAGG+TGG | - | chr1_2:9856757-9856776 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9854501 | 9857466 | 9854501 | ID=Msa0055050;Name=Msa0055050 |
| chr1_2 | mRNA | 9854501 | 9857466 | 9854501 | ID=Msa0055050-mRNA-1;Parent=Msa0055050;Name=Msa0055050-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|0.8|0.66|1|0.6|0.33|6|0|247 |
| chr1_2 | exon | 9854501 | 9854599 | 9854501 | ID=Msa0055050-mRNA-1:exon:3672;Parent=Msa0055050-mRNA-1 |
| chr1_2 | exon | 9855283 | 9855503 | 9855283 | ID=Msa0055050-mRNA-1:exon:3673;Parent=Msa0055050-mRNA-1 |
| chr1_2 | exon | 9855830 | 9855971 | 9855830 | ID=Msa0055050-mRNA-1:exon:3674;Parent=Msa0055050-mRNA-1 |
| chr1_2 | exon | 9856461 | 9856539 | 9856461 | ID=Msa0055050-mRNA-1:exon:3675;Parent=Msa0055050-mRNA-1 |
| chr1_2 | exon | 9856720 | 9856895 | 9856720 | ID=Msa0055050-mRNA-1:exon:3676;Parent=Msa0055050-mRNA-1 |
| chr1_2 | exon | 9857332 | 9857466 | 9857332 | ID=Msa0055050-mRNA-1:exon:3677;Parent=Msa0055050-mRNA-1 |
| chr1_2 | five_prime_UTR | 9854501 | 9854599 | 9854501 | ID=Msa0055050-mRNA-1:five_prime_utr;Parent=Msa0055050-mRNA-1 |
| chr1_2 | five_prime_UTR | 9855283 | 9855291 | 9855283 | ID=Msa0055050-mRNA-1:five_prime_utr;Parent=Msa0055050-mRNA-1 |
| chr1_2 | CDS | 9855292 | 9855503 | 9855292 | ID=Msa0055050-mRNA-1:cds;Parent=Msa0055050-mRNA-1 |
| chr1_2 | CDS | 9855830 | 9855971 | 9855830 | ID=Msa0055050-mRNA-1:cds;Parent=Msa0055050-mRNA-1 |
| chr1_2 | CDS | 9856461 | 9856539 | 9856461 | ID=Msa0055050-mRNA-1:cds;Parent=Msa0055050-mRNA-1 |
| chr1_2 | CDS | 9856720 | 9856895 | 9856720 | ID=Msa0055050-mRNA-1:cds;Parent=Msa0055050-mRNA-1 |
| chr1_2 | CDS | 9857332 | 9857466 | 9857332 | ID=Msa0055050-mRNA-1:cds;Parent=Msa0055050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
