Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058110 | XP_003589472.1 | 94.928 | 414 | 10 | 2 | 1 | 414 | 1 | 403 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058110 | G7I760 | 94.928 | 414 | 10 | 2 | 1 | 414 | 1 | 403 | 0.0 | 797 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0058110 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058110 | Msa0147100 | 0.816801 | 4.584697e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058110 | MtrunA17_Chr1g0156521 | 94.928 | 414 | 10 | 2 | 1 | 414 | 1 | 403 | 0.0 | 797 |
| Msa0058110 | MtrunA17_Chr3g0114991 | 60.584 | 274 | 85 | 8 | 155 | 411 | 183 | 450 | 1.24e-108 | 327 |
| Msa0058110 | MtrunA17_Chr4g0042091 | 50.833 | 240 | 105 | 3 | 182 | 411 | 200 | 436 | 1.26e-70 | 229 |
| Msa0058110 | MtrunA17_Chr3g0104431 | 44.151 | 265 | 121 | 10 | 167 | 412 | 133 | 389 | 1.61e-59 | 198 |
| Msa0058110 | MtrunA17_Chr2g0280501 | 34.127 | 378 | 223 | 10 | 51 | 411 | 8 | 376 | 1.38e-52 | 180 |
| Msa0058110 | MtrunA17_Chr5g0399041 | 40.097 | 207 | 100 | 7 | 209 | 412 | 105 | 290 | 7.95e-38 | 138 |
| Msa0058110 | MtrunA17_Chr4g0056461 | 40.609 | 197 | 86 | 6 | 220 | 412 | 106 | 275 | 9.08e-38 | 138 |
| Msa0058110 | MtrunA17_Chr8g0376191 | 38.596 | 171 | 90 | 4 | 251 | 412 | 2 | 166 | 1.02e-30 | 115 |
| Msa0058110 | MtrunA17_Chr2g0280521 | 48.113 | 106 | 55 | 0 | 216 | 321 | 10 | 115 | 5.12e-25 | 99.4 |
| Msa0058110 | MtrunA17_Chr5g0445321 | 32.642 | 193 | 113 | 7 | 225 | 410 | 1 | 183 | 5.71e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058110 | AT1G75710.1 | 60.991 | 464 | 126 | 14 | 1 | 413 | 1 | 460 | 2.59e-167 | 478 |
| Msa0058110 | AT4G27240.1 | 39.486 | 428 | 196 | 12 | 32 | 411 | 18 | 430 | 1.79e-74 | 239 |
| Msa0058110 | AT5G54630.1 | 49.388 | 245 | 98 | 5 | 187 | 411 | 233 | 471 | 4.48e-69 | 226 |
| Msa0058110 | AT4G27240.2 | 38.557 | 402 | 184 | 12 | 32 | 385 | 18 | 404 | 5.87e-62 | 206 |
| Msa0058110 | AT2G29660.1 | 42.972 | 249 | 116 | 7 | 187 | 412 | 128 | 373 | 2.79e-54 | 184 |
| Msa0058110 | AT1G11490.2 | 37.109 | 256 | 137 | 7 | 176 | 411 | 113 | 364 | 5.32e-41 | 149 |
| Msa0058110 | AT1G11490.1 | 37.109 | 256 | 137 | 7 | 176 | 411 | 113 | 364 | 5.32e-41 | 149 |
| Msa0058110 | AT4G12450.1 | 35.160 | 219 | 100 | 5 | 204 | 412 | 91 | 277 | 3.32e-32 | 123 |
| Msa0058110 | AT4G22560.1 | 37.981 | 208 | 90 | 6 | 209 | 412 | 92 | 264 | 6.65e-31 | 119 |
| Msa0058110 | AT1G62520.1 | 36.585 | 205 | 104 | 7 | 210 | 412 | 100 | 280 | 1.82e-29 | 116 |
Find 120 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1_2:+14372736 | None:intergenic |
| CATTCCCCTACATTATTTAT+AGG | 0.167661 | 1_2:+14369545 | None:intergenic |
| GAGATTGAGGTTGAAGAAAA+AGG | 0.207404 | 1_2:+14374061 | None:intergenic |
| CTTCGATCTGTTTGCATGTT+AGG | 0.213526 | 1_2:+14373819 | None:intergenic |
| AATAATGGTTACTCAAAATT+AGG | 0.218019 | 1_2:-14373761 | Msa0058110:CDS |
| TCATAAACAATTTGCAAGTT+TGG | 0.222949 | 1_2:+14369688 | None:intergenic |
| ACTCGTTCTGCATCATGTTC+TGG | 0.262275 | 1_2:-14373590 | Msa0058110:CDS |
| CGGTTGGAGAAGATTCTAAA+AGG | 0.273622 | 1_2:-14370002 | Msa0058110:CDS |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1_2:+14372781 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1_2:-14373523 | Msa0058110:CDS |
| GTTTATGATTGTCTTGGATA+TGG | 0.301692 | 1_2:-14369673 | Msa0058110:three_prime_UTR |
| TCCACCCTTTGCGCTGTGCC+TGG | 0.313978 | 1_2:-14370114 | Msa0058110:CDS |
| CGAGTTGATGAAGCAGTAAT+AGG | 0.323514 | 1_2:+14373608 | None:intergenic |
| GATTCCATTGCGGGGAATGC+TGG | 0.326389 | 1_2:-14369886 | Msa0058110:CDS |
| AAAATGTATTCTCTCTTTCA+TGG | 0.342333 | 1_2:+14374032 | None:intergenic |
| AGCTTTAGAGATGTTGTTCA+TGG | 0.351657 | 1_2:-14373716 | Msa0058110:CDS |
| GAGTAACCATTATTGTTGTT+TGG | 0.358892 | 1_2:+14373770 | None:intergenic |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1_2:+14372787 | None:intergenic |
| TCAAAACCAAACAACAATAA+TGG | 0.382878 | 1_2:-14373776 | Msa0058110:CDS |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1_2:-14373660 | Msa0058110:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1_2:+14369954 | None:intergenic |
| CTCGTTCTGCATCATGTTCT+GGG | 0.404522 | 1_2:-14373589 | Msa0058110:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1_2:-14373512 | Msa0058110:CDS |
| ATTAGATCGCGTATCAAGAT+TGG | 0.411310 | 1_2:+14369597 | None:intergenic |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1_2:+14372737 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1_2:-14372740 | Msa0058110:CDS |
| AACATCTCTAAAGCTACAAA+TGG | 0.420366 | 1_2:+14373724 | None:intergenic |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1_2:-14370387 | Msa0058110:CDS |
| TTAGATCGCGTATCAAGATT+GGG | 0.428870 | 1_2:+14369598 | None:intergenic |
| CAAATTGTTTATGATTGTCT+TGG | 0.430902 | 1_2:-14369679 | Msa0058110:three_prime_UTR |
| CTTGTGTGCCGCGTAATTGC+CGG | 0.434569 | 1_2:-14369973 | Msa0058110:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1_2:-14370403 | Msa0058110:intron |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1_2:+14370378 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1_2:-14370402 | Msa0058110:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1_2:+14370259 | None:intergenic |
| GTTGCCATCTGCGGCACACC+GGG | 0.446676 | 1_2:+14370194 | None:intergenic |
| GGTGGTGTCGGAGGAGGAAA+TGG | 0.447453 | 1_2:-14369917 | Msa0058110:CDS |
| TTTATTTGGTCCCATGATGA+AGG | 0.458813 | 1_2:+14373848 | None:intergenic |
| AAATGTATTCTCTCTTTCAT+GGG | 0.462519 | 1_2:+14374033 | None:intergenic |
| CTTTGCGCTGTGCCTGGATG+CGG | 0.464668 | 1_2:-14370108 | Msa0058110:CDS |
| GCGGAGTTTGCAACATCATC+CGG | 0.466040 | 1_2:-14370089 | Msa0058110:CDS |
| TGCACCGGTGGTGTCGGAGG+AGG | 0.468864 | 1_2:-14369923 | Msa0058110:CDS |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1_2:+14373461 | None:intergenic |
| GATCACCTATAAATAATGTA+GGG | 0.475415 | 1_2:-14369550 | Msa0058110:three_prime_UTR |
| TGATCACCTATAAATAATGT+AGG | 0.477586 | 1_2:-14369551 | Msa0058110:three_prime_UTR |
| GGAAGGTGCACCGGTGGTGT+CGG | 0.478428 | 1_2:-14369929 | Msa0058110:CDS |
| ATTCCATTGCGGGGAATGCT+GGG | 0.485252 | 1_2:-14369885 | Msa0058110:CDS |
| AGGCACAGCGCAAAGGGTGG+AGG | 0.488877 | 1_2:+14370116 | None:intergenic |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1_2:-14373659 | Msa0058110:CDS |
| GCATCCAGGCACAGCGCAAA+GGG | 0.492013 | 1_2:+14370110 | None:intergenic |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1_2:-14370268 | Msa0058110:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1_2:+14370224 | None:intergenic |
| TGGTAGGGCCCACGACAATT+CGG | 0.496075 | 1_2:-14370022 | Msa0058110:CDS |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1_2:+14373462 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1_2:-14369950 | Msa0058110:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1_2:+14370223 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1_2:-14373475 | Msa0058110:intron |
| CATTAAGAAAATAGCTAGAA+TGG | 0.500498 | 1_2:+14374000 | None:intergenic |
| CGCATCCAGGCACAGCGCAA+AGG | 0.505355 | 1_2:+14370109 | None:intergenic |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1_2:-14372712 | Msa0058110:intron |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1_2:+14370163 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1_2:-14373694 | Msa0058110:CDS |
| AGGTGCACCGGTGGTGTCGG+AGG | 0.521522 | 1_2:-14369926 | Msa0058110:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1_2:+14369826 | None:intergenic |
| CGTTGCCATCTGCGGCACAC+CGG | 0.527397 | 1_2:+14370193 | None:intergenic |
| CGATCTGTTTGCATGTTAGG+AGG | 0.530379 | 1_2:+14373822 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1_2:-14369946 | Msa0058110:CDS |
| GGTTGGAGAAGATTCTAAAA+GGG | 0.542282 | 1_2:-14370001 | Msa0058110:CDS |
| AATCCCCGGTGTGCCGCAGA+TGG | 0.542426 | 1_2:-14370198 | Msa0058110:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1_2:+14370280 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.550457 | 1_2:+14370096 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1_2:-14373569 | Msa0058110:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1_2:-14370350 | Msa0058110:CDS |
| ATTTGGTCCCATGATGAAGG+TGG | 0.555839 | 1_2:+14373851 | None:intergenic |
| AGACCAATGCTAGTAGTGGT+AGG | 0.560855 | 1_2:-14370038 | Msa0058110:CDS |
| TTGTGTGCCGCGTAATTGCC+GGG | 0.563188 | 1_2:-14369972 | Msa0058110:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1_2:+14373559 | None:intergenic |
| TCACTTTCCCGGCAATTACG+CGG | 0.565013 | 1_2:+14369965 | None:intergenic |
| GGCCCTACCACTACTAGCAT+TGG | 0.565787 | 1_2:+14370035 | None:intergenic |
| ATTTCCTCCTCCGACACCAC+CGG | 0.566681 | 1_2:+14369919 | None:intergenic |
| TTCTCCAACCGAATTGTCGT+GGG | 0.568898 | 1_2:+14370014 | None:intergenic |
| TTGGATTGAGAATTAATGAG+AGG | 0.569672 | 1_2:-14369504 | Msa0058110:three_prime_UTR |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1_2:+14373656 | None:intergenic |
| ACTCCCAGCATTCCCCGCAA+TGG | 0.570065 | 1_2:+14369882 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1_2:-14369935 | Msa0058110:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1_2:-14370314 | Msa0058110:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.577528 | 1_2:-14370037 | Msa0058110:CDS |
| GGGGTGGGATTGTTCAGGCA+AGG | 0.579076 | 1_2:+14373964 | None:intergenic |
| TCCAGGCACAGCGCAAAGGG+TGG | 0.581274 | 1_2:+14370113 | None:intergenic |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1_2:+14370312 | None:intergenic |
| AGGGCCCACGACAATTCGGT+TGG | 0.586441 | 1_2:-14370018 | Msa0058110:CDS |
| CTTCTCCAACCGAATTGTCG+TGG | 0.589666 | 1_2:+14370013 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1_2:-14370394 | Msa0058110:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1_2:-14370141 | Msa0058110:CDS |
| AATGTATTCTCTCTTTCATG+GGG | 0.602466 | 1_2:+14374034 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1_2:-14369938 | Msa0058110:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1_2:-14370150 | Msa0058110:CDS |
| TCATCATCATCATCTTCAAG+AGG | 0.611489 | 1_2:-14373536 | Msa0058110:CDS |
| GTCAAGACCAATGCTAGTAG+TGG | 0.621391 | 1_2:-14370042 | Msa0058110:CDS |
| TGAGAATTAATGAGAGGACG+TGG | 0.624626 | 1_2:-14369498 | None:intergenic |
| ATCACCTATAAATAATGTAG+GGG | 0.629852 | 1_2:-14369549 | Msa0058110:three_prime_UTR |
| GAGGAGTTCGTTGCCATCTG+CGG | 0.630941 | 1_2:+14370185 | None:intergenic |
| TTGCCATCTGCGGCACACCG+GGG | 0.645965 | 1_2:+14370195 | None:intergenic |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1_2:+14369811 | None:intergenic |
| TAGATCGCGTATCAAGATTG+GGG | 0.658256 | 1_2:+14369599 | None:intergenic |
| CTAACATGCAAACAGATCGA+AGG | 0.664448 | 1_2:-14373818 | Msa0058110:CDS |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1_2:-14369953 | Msa0058110:CDS |
| GTTTGCAACATCATCCGGCA+CGG | 0.666115 | 1_2:-14370084 | Msa0058110:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1_2:-14373575 | Msa0058110:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1_2:+14370157 | None:intergenic |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.677049 | 1_2:-14369956 | Msa0058110:CDS |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1_2:+14370166 | None:intergenic |
| ACTGTGATATCAAACATGCA+AGG | 0.682678 | 1_2:+14369765 | None:intergenic |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1_2:-14370275 | Msa0058110:CDS |
| TCGTTGTGATCAGTGTGGAG+AGG | 0.714771 | 1_2:-14372764 | Msa0058110:CDS |
| ATGTATTCTCTCTTTCATGG+GGG | 0.720417 | 1_2:+14374035 | None:intergenic |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1_2:-14370253 | Msa0058110:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1_2:-14373572 | Msa0058110:CDS |
| TGCAAGGTATTCGATCAACA+CGG | 0.737085 | 1_2:+14369781 | None:intergenic |
| TTATGTCGTTGTGATCAGTG+TGG | 0.816235 | 1_2:-14372769 | Msa0058110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTATAATTATATTT+AGG | - | chr1_2:14370243-14370262 | Msa0058110:CDS | 0.0% |
| !! | AAATATTATTTATTATTATT+AGG | - | chr1_2:14372733-14372752 | Msa0058110:CDS | 0.0% |
| !!! | ATTTTTTTTTGACAAAATTT+AGG | - | chr1_2:14370273-14370292 | Msa0058110:CDS | 10.0% |
| !!! | GTTTTTAAAAATTTGATATA+TGG | - | chr1_2:14370318-14370337 | Msa0058110:CDS | 10.0% |
| !!! | ACATAATAATTTTATTCAAT+TGG | + | chr1_2:14371951-14371970 | None:intergenic | 10.0% |
| !!! | GATTTTTATTTGTATTTTAT+TGG | - | chr1_2:14374076-14374095 | Msa0058110:five_prime_UTR | 10.0% |
| !! | AAAGTTATAATTGAAAAATG+TGG | + | chr1_2:14370570-14370589 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTTTTCATACTC+AGG | - | chr1_2:14370786-14370805 | Msa0058110:intron | 15.0% |
| !! | AGAAAAGTTACTTATAAAAA+AGG | - | chr1_2:14371731-14371750 | Msa0058110:intron | 15.0% |
| !! | GTGAATTATTGTTTAAATTT+AGG | - | chr1_2:14372091-14372110 | Msa0058110:intron | 15.0% |
| !! | ATTATTGTTTAAATTTAGGT+TGG | - | chr1_2:14372095-14372114 | Msa0058110:intron | 15.0% |
| !! | AACTATATAATTATACTAGT+AGG | + | chr1_2:14372925-14372944 | None:intergenic | 15.0% |
| !! | TAATTATGTATAGAGTTTAA+TGG | - | chr1_2:14372959-14372978 | Msa0058110:intron | 15.0% |
| !!! | CATTTTCAACAAATTTTTGA+AGG | + | chr1_2:14369504-14369523 | None:intergenic | 20.0% |
| !!! | CTTCAAAAATTTGTTGAAAA+TGG | - | chr1_2:14369502-14369521 | Msa0058110:three_prime_UTR | 20.0% |
| !! | AATAATGGTTACTCAAAATT+AGG | - | chr1_2:14369838-14369857 | Msa0058110:CDS | 20.0% |
| !! | TTGCTCATAAAATAAGATAT+TGG | + | chr1_2:14370495-14370514 | None:intergenic | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | + | chr1_2:14370538-14370557 | None:intergenic | 20.0% |
| !! | TATAATTGAAAAATGTGGTT+GGG | + | chr1_2:14370565-14370584 | None:intergenic | 20.0% |
| !! | TTATAATTGAAAAATGTGGT+TGG | + | chr1_2:14370566-14370585 | None:intergenic | 20.0% |
| !!! | TTAAGTCTTTTCATTTCTAA+AGG | - | chr1_2:14370709-14370728 | Msa0058110:intron | 20.0% |
| !!! | GCTAAGTAATTAATTTTCAT+AGG | + | chr1_2:14370756-14370775 | None:intergenic | 20.0% |
| !! | ATCTTACTTTCACTTATATA+TGG | - | chr1_2:14371075-14371094 | Msa0058110:intron | 20.0% |
| !! | TCTCATCAAAAATATCTTTA+TGG | - | chr1_2:14371243-14371262 | Msa0058110:intron | 20.0% |
| !! | CTCATCAAAAATATCTTTAT+GGG | - | chr1_2:14371244-14371263 | Msa0058110:intron | 20.0% |
| !!! | TCTTTTAATTAGAATACAAG+AGG | + | chr1_2:14371714-14371733 | None:intergenic | 20.0% |
| !! | TTTAGTATAAATATACTCGT+TGG | - | chr1_2:14371760-14371779 | Msa0058110:intron | 20.0% |
| !!! | TAGGAATCTAATTCTTTTTA+TGG | - | chr1_2:14372640-14372659 | Msa0058110:intron | 20.0% |
| !! | AAGTATACTTATAGATTCTT+AGG | - | chr1_2:14373123-14373142 | Msa0058110:intron | 20.0% |
| !!! | TAGGAATATTCTTATTTTCT+TGG | - | chr1_2:14373142-14373161 | Msa0058110:intron | 20.0% |
| ! | AAATGTATTCTCTCTTTCAT+GGG | + | chr1_2:14369569-14369588 | None:intergenic | 25.0% |
| ! | AAAATGTATTCTCTCTTTCA+TGG | + | chr1_2:14369570-14369589 | None:intergenic | 25.0% |
| ! | CATTAAGAAAATAGCTAGAA+TGG | + | chr1_2:14369602-14369621 | None:intergenic | 25.0% |
| !!! | CATTCTAGCTATTTTCTTAA+TGG | - | chr1_2:14369600-14369619 | Msa0058110:three_prime_UTR | 25.0% |
| !!! | GTTTTTGTTTCTGTTGTTTT+TGG | + | chr1_2:14369699-14369718 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGGTTTTGGTTT+TGG | + | chr1_2:14369727-14369746 | None:intergenic | 25.0% |
| !!! | ATGTTAGGAGGTTTTTTATT+TGG | + | chr1_2:14369768-14369787 | None:intergenic | 25.0% |
| !!! | TTATTGTTGTTTGGTTTTGA+AGG | + | chr1_2:14369823-14369842 | None:intergenic | 25.0% |
| ! | TCAAAACCAAACAACAATAA+TGG | - | chr1_2:14369823-14369842 | Msa0058110:CDS | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1_2:14370363-14370382 | Msa0058110:CDS | 25.0% |
| !! | ATTTTATGAGCAATCTACTT+TGG | - | chr1_2:14370502-14370521 | Msa0058110:intron | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1_2:14370997-14371016 | None:intergenic | 25.0% |
| ! | TATAGTAAATGTGATACGAA+AGG | + | chr1_2:14371035-14371054 | None:intergenic | 25.0% |
| ! | GAATAGAAGAGTTAATATGT+TGG | + | chr1_2:14371138-14371157 | None:intergenic | 25.0% |
| ! | AACTAACAAGAATTTAGATG+TGG | - | chr1_2:14371173-14371192 | Msa0058110:intron | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1_2:14371277-14371296 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1_2:14371278-14371297 | None:intergenic | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | - | chr1_2:14371284-14371303 | Msa0058110:intron | 25.0% |
| !!! | TTTTCTAGTTATCTTCTTCT+TGG | - | chr1_2:14371420-14371439 | Msa0058110:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr1_2:14371501-14371520 | Msa0058110:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr1_2:14371514-14371533 | Msa0058110:intron | 25.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | + | chr1_2:14371599-14371618 | None:intergenic | 25.0% |
| ! | GTGTCTAAATTATCTTTAAC+CGG | - | chr1_2:14371679-14371698 | Msa0058110:intron | 25.0% |
| !! | AACAAACTCTTTTCATTAGT+TGG | + | chr1_2:14371984-14372003 | None:intergenic | 25.0% |
| ! | GTGTTACAAAATGTATTGTT+AGG | - | chr1_2:14372013-14372032 | Msa0058110:intron | 25.0% |
| ! | TTGTTAGGACAAATTAACAT+CGG | - | chr1_2:14372028-14372047 | Msa0058110:intron | 25.0% |
| ! | GTGATATATTGTGAATGAAT+CGG | + | chr1_2:14372219-14372238 | None:intergenic | 25.0% |
| !! | TAGTTTTCTATCGTATGATA+TGG | + | chr1_2:14372505-14372524 | None:intergenic | 25.0% |
| ! | TGAGCATGCATAAAAAAAAT+TGG | + | chr1_2:14373102-14373121 | None:intergenic | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | + | chr1_2:14373791-14373810 | None:intergenic | 25.0% |
| ! | TCATAAACAATTTGCAAGTT+TGG | + | chr1_2:14373914-14373933 | None:intergenic | 25.0% |
| ! | CAAATTGTTTATGATTGTCT+TGG | - | chr1_2:14373920-14373939 | Msa0058110:CDS | 25.0% |
| ! | TGATCACCTATAAATAATGT+AGG | - | chr1_2:14374048-14374067 | Msa0058110:five_prime_UTR | 25.0% |
| ! | GATCACCTATAAATAATGTA+GGG | - | chr1_2:14374049-14374068 | Msa0058110:five_prime_UTR | 25.0% |
| ! | ATCACCTATAAATAATGTAG+GGG | - | chr1_2:14374050-14374069 | Msa0058110:five_prime_UTR | 25.0% |
| AATGTATTCTCTCTTTCATG+GGG | + | chr1_2:14369568-14369587 | None:intergenic | 30.0% | |
| !! | GGTTCTTTTGTTTGTGTTTT+GGG | + | chr1_2:14369678-14369697 | None:intergenic | 30.0% |
| !! | TGGTTCTTTTGTTTGTGTTT+TGG | + | chr1_2:14369679-14369698 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTGGTTTTGGTTT+TGG | + | chr1_2:14369715-14369734 | None:intergenic | 30.0% |
| ! | GAGTAACCATTATTGTTGTT+TGG | + | chr1_2:14369832-14369851 | None:intergenic | 30.0% |
| !! | AACATCTCTAAAGCTACAAA+TGG | + | chr1_2:14369878-14369897 | None:intergenic | 30.0% |
| AACATTATGTTAACCTGCTA+GGG | + | chr1_2:14370140-14370159 | None:intergenic | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | + | chr1_2:14370141-14370160 | None:intergenic | 30.0% | |
| CTTCTATTCCAATTAATGCA+CGG | - | chr1_2:14371149-14371168 | Msa0058110:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | - | chr1_2:14371283-14371302 | Msa0058110:intron | 30.0% | |
| AAAATTGAATCATGTGTGTG+GGG | - | chr1_2:14371285-14371304 | Msa0058110:intron | 30.0% | |
| ! | CATCTTCGAAATTTGAAACA+AGG | - | chr1_2:14371325-14371344 | Msa0058110:intron | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1_2:14371329-14371348 | Msa0058110:intron | 30.0% |
| TACTAAGATAATGACATGCA+CGG | + | chr1_2:14371371-14371390 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr1_2:14371476-14371495 | None:intergenic | 30.0% | |
| AAAAACAATGGAGAGAGAAA+AGG | - | chr1_2:14371526-14371545 | Msa0058110:intron | 30.0% | |
| AAAACAATGGAGAGAGAAAA+GGG | - | chr1_2:14371527-14371546 | Msa0058110:intron | 30.0% | |
| GTCCAAAAATTGTCAAAAAG+TGG | - | chr1_2:14371594-14371613 | Msa0058110:intron | 30.0% | |
| AAATATCTTCTAGTACTGCT+GGG | - | chr1_2:14371792-14371811 | Msa0058110:intron | 30.0% | |
| !! | GTTTAAATTTAGGTTGGTAG+AGG | - | chr1_2:14372101-14372120 | Msa0058110:intron | 30.0% |
| ! | ATAACAAATGGCACTTGTTT+TGG | + | chr1_2:14372253-14372272 | None:intergenic | 30.0% |
| TGTATATGCCTCATAACAAA+TGG | + | chr1_2:14372265-14372284 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGGTGAATGAAACA+GGG | + | chr1_2:14372305-14372324 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGGTGAATGAAAC+AGG | + | chr1_2:14372306-14372325 | None:intergenic | 30.0% |
| TAGTGTCAGTTTCTTATATG+TGG | + | chr1_2:14372438-14372457 | None:intergenic | 30.0% | |
| CAAATACACTACTACTACAA+TGG | - | chr1_2:14372472-14372491 | Msa0058110:intron | 30.0% | |
| ! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1_2:14372602-14372621 | None:intergenic | 30.0% |
| CCATATAGAAATTCAAACCA+AGG | - | chr1_2:14372599-14372618 | Msa0058110:intron | 30.0% | |
| ATTAATTCACCTTGTTACGA+TGG | + | chr1_2:14372777-14372796 | None:intergenic | 30.0% | |
| ! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1_2:14373190-14373209 | Msa0058110:intron | 30.0% |
| AGATAATCTTCAAATCTAGC+TGG | - | chr1_2:14373249-14373268 | Msa0058110:intron | 30.0% | |
| GTTTATGATTGTCTTGGATA+TGG | - | chr1_2:14373926-14373945 | Msa0058110:CDS | 30.0% | |
| CATTCCCCTACATTATTTAT+AGG | + | chr1_2:14374057-14374076 | None:intergenic | 30.0% | |
| TTGGATTGAGAATTAATGAG+AGG | - | chr1_2:14374095-14374114 | Msa0058110:five_prime_UTR | 30.0% | |
| TTGAGGTTGAAGAAAAAGGT+TGG | + | chr1_2:14369537-14369556 | None:intergenic | 35.0% | |
| GAGATTGAGGTTGAAGAAAA+AGG | + | chr1_2:14369541-14369560 | None:intergenic | 35.0% | |
| ATGTATTCTCTCTTTCATGG+GGG | + | chr1_2:14369567-14369586 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGGAGTGTTTTTT+CGG | + | chr1_2:14369665-14369684 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTTGTTTTGGTTT+TGG | + | chr1_2:14369733-14369752 | None:intergenic | 35.0% |
| !! | GATGAAGGTGGTTTTTGTTT+TGG | + | chr1_2:14369739-14369758 | None:intergenic | 35.0% |
| AACAAAAACCACCTTCATCA+TGG | - | chr1_2:14369740-14369759 | Msa0058110:three_prime_UTR | 35.0% | |
| ACAAAAACCACCTTCATCAT+GGG | - | chr1_2:14369741-14369760 | Msa0058110:three_prime_UTR | 35.0% | |
| TTTATTTGGTCCCATGATGA+AGG | + | chr1_2:14369754-14369773 | None:intergenic | 35.0% | |
| !! | AGCTTTAGAGATGTTGTTCA+TGG | - | chr1_2:14369883-14369902 | Msa0058110:CDS | 35.0% |
| GAAACACTAGAGTTGTTCAT+AGG | - | chr1_2:14369905-14369924 | Msa0058110:CDS | 35.0% | |
| TCATCATCATCATCTTCAAG+AGG | - | chr1_2:14370063-14370082 | Msa0058110:CDS | 35.0% | |
| ! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1_2:14370815-14370834 | None:intergenic | 35.0% |
| GTTCCAAGCTTTCAATCTTA+GGG | + | chr1_2:14370865-14370884 | None:intergenic | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | + | chr1_2:14370866-14370885 | None:intergenic | 35.0% | |
| !! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1_2:14371102-14371121 | None:intergenic | 35.0% |
| GTTAGTTACCGTGCATTAAT+TGG | + | chr1_2:14371160-14371179 | None:intergenic | 35.0% | |
| ! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1_2:14371328-14371347 | Msa0058110:intron | 35.0% |
| CAGTACTTGTAAAGCAACTA+GGG | + | chr1_2:14371396-14371415 | None:intergenic | 35.0% | |
| ACAGTACTTGTAAAGCAACT+AGG | + | chr1_2:14371397-14371416 | None:intergenic | 35.0% | |
| GATAATTTAGACACCCCAAA+GGG | + | chr1_2:14371673-14371692 | None:intergenic | 35.0% | |
| AGATAATTTAGACACCCCAA+AGG | + | chr1_2:14371674-14371693 | None:intergenic | 35.0% | |
| !! | ATACAAGAGGTACTCTAATC+CGG | + | chr1_2:14371701-14371720 | None:intergenic | 35.0% |
| CAAATATCTTCTAGTACTGC+TGG | - | chr1_2:14371791-14371810 | Msa0058110:intron | 35.0% | |
| ! | ATCGGTTGAGTTTTGCAAAA+TGG | - | chr1_2:14372046-14372065 | Msa0058110:intron | 35.0% |
| !! | AACAAGTGCCATTTGTTATG+AGG | - | chr1_2:14372254-14372273 | Msa0058110:intron | 35.0% |
| GTCAGTTTCTTATATGTGGA+TGG | + | chr1_2:14372434-14372453 | None:intergenic | 35.0% | |
| TGTCAACTTAATGTAGTGTC+TGG | + | chr1_2:14372558-14372577 | None:intergenic | 35.0% | |
| ! | GGTTGGAGAAGATTCTAAAA+GGG | - | chr1_2:14373598-14373617 | Msa0058110:CDS | 35.0% |
| AAACAAGGAAGAATAGCTCT+TGG | + | chr1_2:14373776-14373795 | None:intergenic | 35.0% | |
| ACTGTGATATCAAACATGCA+AGG | + | chr1_2:14373837-14373856 | None:intergenic | 35.0% | |
| TTAGATCGCGTATCAAGATT+GGG | + | chr1_2:14374004-14374023 | None:intergenic | 35.0% | |
| ATTAGATCGCGTATCAAGAT+TGG | + | chr1_2:14374005-14374024 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTCGGTTTTGGGGT+GGG | + | chr1_2:14369653-14369672 | None:intergenic | 40.0% |
| !!! | GGAGTGTTTTTTCGGTTTTG+GGG | + | chr1_2:14369657-14369676 | None:intergenic | 40.0% |
| !!! | GGGAGTGTTTTTTCGGTTTT+GGG | + | chr1_2:14369658-14369677 | None:intergenic | 40.0% |
| !!! | TGGGAGTGTTTTTTCGGTTT+TGG | + | chr1_2:14369659-14369678 | None:intergenic | 40.0% |
| CTTCGATCTGTTTGCATGTT+AGG | + | chr1_2:14369783-14369802 | None:intergenic | 40.0% | |
| CTAACATGCAAACAGATCGA+AGG | - | chr1_2:14369781-14369800 | Msa0058110:exon | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | - | chr1_2:14369939-14369958 | Msa0058110:CDS | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | - | chr1_2:14369940-14369959 | Msa0058110:CDS | 40.0% | |
| !! | CGAGTTGATGAAGCAGTAAT+AGG | + | chr1_2:14369994-14370013 | None:intergenic | 40.0% |
| !! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1_2:14370024-14370043 | Msa0058110:CDS | 40.0% |
| CTTCAAGAGGAATGCAGTTT+AGG | - | chr1_2:14370076-14370095 | Msa0058110:CDS | 40.0% | |
| ATGCAGTTTAGGAAGCTATC+TGG | - | chr1_2:14370087-14370106 | Msa0058110:CDS | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | + | chr1_2:14370821-14370840 | None:intergenic | 40.0% | |
| TTATGTCGTTGTGATCAGTG+TGG | - | chr1_2:14370830-14370849 | Msa0058110:intron | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | - | chr1_2:14370859-14370878 | Msa0058110:intron | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | - | chr1_2:14371337-14371356 | Msa0058110:intron | 40.0% | |
| AAGATAATGACATGCACGGA+TGG | + | chr1_2:14371367-14371386 | None:intergenic | 40.0% | |
| ! | CTCTTTTCATTTCGACCTCT+TGG | - | chr1_2:14371634-14371653 | Msa0058110:intron | 40.0% |
| TTCATTTCGACCTCTTGGAT+TGG | - | chr1_2:14371639-14371658 | Msa0058110:intron | 40.0% | |
| ! | GATTGGTTATGTAGCCCTTT+GGG | - | chr1_2:14371656-14371675 | Msa0058110:intron | 40.0% |
| ATTGGTTATGTAGCCCTTTG+GGG | - | chr1_2:14371657-14371676 | Msa0058110:intron | 40.0% | |
| !!! | ACAAATGGCACTTGTTTTGG+TGG | + | chr1_2:14372250-14372269 | None:intergenic | 40.0% |
| AATCAAGAGTTGTCACGTTG+TGG | + | chr1_2:14372403-14372422 | None:intergenic | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | - | chr1_2:14372405-14372424 | Msa0058110:intron | 40.0% | |
| GTGTCTGGCTAATGATAACT+TGG | + | chr1_2:14372543-14372562 | None:intergenic | 40.0% | |
| AGTATCACTCCATCGTAACA+AGG | - | chr1_2:14372765-14372784 | Msa0058110:CDS | 40.0% | |
| CTCCAATGTGCAAGATTGAA+CGG | - | chr1_2:14373285-14373304 | Msa0058110:intron | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | + | chr1_2:14373290-14373309 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | - | chr1_2:14373324-14373343 | Msa0058110:intron | 40.0% | |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1_2:14373532-14373551 | None:intergenic | 40.0% |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1_2:14373533-14373552 | Msa0058110:CDS | 40.0% |
| CGGTTGGAGAAGATTCTAAA+AGG | - | chr1_2:14373597-14373616 | Msa0058110:CDS | 40.0% | |
| !!! | GGTGTGTTTTGATTCCATTG+CGG | - | chr1_2:14373703-14373722 | Msa0058110:CDS | 40.0% |
| !!! | GTGTGTTTTGATTCCATTGC+GGG | - | chr1_2:14373704-14373723 | Msa0058110:CDS | 40.0% |
| !!! | TGTGTTTTGATTCCATTGCG+GGG | - | chr1_2:14373705-14373724 | Msa0058110:CDS | 40.0% |
| ! | TGCAAGGTATTCGATCAACA+CGG | + | chr1_2:14373821-14373840 | None:intergenic | 40.0% |
| TAGATCGCGTATCAAGATTG+GGG | + | chr1_2:14374003-14374022 | None:intergenic | 40.0% | |
| !!! | GTGTTTTTTCGGTTTTGGGG+TGG | + | chr1_2:14369654-14369673 | None:intergenic | 45.0% |
| ATTTGGTCCCATGATGAAGG+TGG | + | chr1_2:14369751-14369770 | None:intergenic | 45.0% | |
| CGATCTGTTTGCATGTTAGG+AGG | + | chr1_2:14369780-14369799 | None:intergenic | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | + | chr1_2:14369946-14369965 | None:intergenic | 45.0% | |
| ACTCGTTCTGCATCATGTTC+TGG | - | chr1_2:14370009-14370028 | Msa0058110:CDS | 45.0% | |
| CTCGTTCTGCATCATGTTCT+GGG | - | chr1_2:14370010-14370029 | Msa0058110:CDS | 45.0% | |
| ATAATGACATGCACGGATGG+TGG | + | chr1_2:14371364-14371383 | None:intergenic | 45.0% | |
| GGCTACATAACCAATCCAAG+AGG | + | chr1_2:14371652-14371671 | None:intergenic | 45.0% | |
| !! | GGATTGGTTATGTAGCCCTT+TGG | - | chr1_2:14371655-14371674 | Msa0058110:intron | 45.0% |
| TACGTACGAGATATCACAGC+TGG | - | chr1_2:14372348-14372367 | Msa0058110:intron | 45.0% | |
| TACGAGATATCACAGCTGGA+TGG | - | chr1_2:14372352-14372371 | Msa0058110:intron | 45.0% | |
| GATTCCTAGTCCCTACAACT+CGG | + | chr1_2:14372628-14372647 | None:intergenic | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | - | chr1_2:14373196-14373215 | Msa0058110:intron | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | - | chr1_2:14373197-14373216 | Msa0058110:intron | 45.0% | |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1_2:14373224-14373243 | None:intergenic | 45.0% |
| GGATTGTTCGTTGTGTGTTG+TGG | + | chr1_2:14373322-14373341 | None:intergenic | 45.0% | |
| !!! | GGGATTTTTCTTGGTGGTGT+TGG | + | chr1_2:14373387-14373406 | None:intergenic | 45.0% |
| ACACCACCAAGAAAAATCCC+CGG | - | chr1_2:14373387-14373406 | Msa0058110:intron | 45.0% | |
| ATAGCGATGTGCTGTGGAAA+CGG | + | chr1_2:14373439-14373458 | None:intergenic | 45.0% | |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1_2:14373530-14373549 | Msa0058110:CDS | 45.0% |
| GTCAAGACCAATGCTAGTAG+TGG | - | chr1_2:14373557-14373576 | Msa0058110:CDS | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | - | chr1_2:14373561-14373580 | Msa0058110:CDS | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | - | chr1_2:14373562-14373581 | Msa0058110:CDS | 45.0% | |
| TTCTCCAACCGAATTGTCGT+GGG | + | chr1_2:14373588-14373607 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTAACAATATTAT+TGG | - | chr1_2:14370455-14370474 | Msa0058110:intron | 5.0% |
| !!! | TAAAACATTTTTATTTTTTT+GGG | + | chr1_2:14372319-14372338 | None:intergenic | 5.0% |
| !!! | TTAAAACATTTTTATTTTTT+TGG | + | chr1_2:14372320-14372339 | None:intergenic | 5.0% |
| TTCATGGGGGAGAGAGATTG+AGG | + | chr1_2:14369554-14369573 | None:intergenic | 50.0% | |
| !!! | GTTTTGGGGTGGGATTGTTC+AGG | + | chr1_2:14369643-14369662 | None:intergenic | 50.0% |
| TCTGGGAAATCATCCAACGG+TGG | - | chr1_2:14370027-14370046 | Msa0058110:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | + | chr1_2:14370043-14370062 | None:intergenic | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | - | chr1_2:14370124-14370143 | Msa0058110:CDS | 50.0% | |
| TCGTTGTGATCAGTGTGGAG+AGG | - | chr1_2:14370835-14370854 | Msa0058110:intron | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | - | chr1_2:14370887-14370906 | Msa0058110:intron | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | + | chr1_2:14372400-14372419 | None:intergenic | 50.0% | |
| AACCAAGGTAGCCGAGTTGT+AGG | - | chr1_2:14372614-14372633 | Msa0058110:intron | 50.0% | |
| ACCAAGGTAGCCGAGTTGTA+GGG | - | chr1_2:14372615-14372634 | Msa0058110:intron | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | - | chr1_2:14373331-14373350 | Msa0058110:intron | 50.0% | |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1_2:14373379-14373398 | None:intergenic | 50.0% |
| ! | ACACCGGGGATTTTTCTTGG+TGG | + | chr1_2:14373393-14373412 | None:intergenic | 50.0% |
| ACATCGCTATCGTGTGCACT+CGG | - | chr1_2:14373449-14373468 | Msa0058110:intron | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | + | chr1_2:14373506-14373525 | None:intergenic | 50.0% | |
| GCGGAGTTTGCAACATCATC+CGG | - | chr1_2:14373510-14373529 | Msa0058110:CDS | 50.0% | |
| GTTTGCAACATCATCCGGCA+CGG | - | chr1_2:14373515-14373534 | Msa0058110:CDS | 50.0% | |
| CTTCTCCAACCGAATTGTCG+TGG | + | chr1_2:14373589-14373608 | None:intergenic | 50.0% | |
| TCACTTTCCCGGCAATTACG+CGG | + | chr1_2:14373637-14373656 | None:intergenic | 50.0% | |
| ATTCCATTGCGGGGAATGCT+GGG | - | chr1_2:14373714-14373733 | Msa0058110:CDS | 50.0% | |
| GGGAAATCATCCAACGGTGG+AGG | - | chr1_2:14370030-14370049 | Msa0058110:CDS | 55.0% | |
| AGTTGTCACGTTGTGGAGGC+AGG | + | chr1_2:14372396-14372415 | None:intergenic | 55.0% | |
| TCCCTACAACTCGGCTACCT+TGG | + | chr1_2:14372619-14372638 | None:intergenic | 55.0% | |
| GTAGCCGAGTTGTAGGGACT+AGG | - | chr1_2:14372621-14372640 | Msa0058110:intron | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | + | chr1_2:14373343-14373362 | None:intergenic | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | - | chr1_2:14373346-14373365 | Msa0058110:intron | 55.0% | |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1_2:14373378-14373397 | None:intergenic | 55.0% |
| ! | GGCACACCGGGGATTTTTCT+TGG | + | chr1_2:14373396-14373415 | None:intergenic | 55.0% |
| GAGGAGTTCGTTGCCATCTG+CGG | + | chr1_2:14373417-14373436 | None:intergenic | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | + | chr1_2:14373445-14373464 | None:intergenic | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | + | chr1_2:14373567-14373586 | None:intergenic | 55.0% | |
| TGGTAGGGCCCACGACAATT+CGG | - | chr1_2:14373577-14373596 | Msa0058110:CDS | 55.0% | |
| CTTGTGTGCCGCGTAATTGC+CGG | - | chr1_2:14373626-14373645 | Msa0058110:CDS | 55.0% | |
| TTGTGTGCCGCGTAATTGCC+GGG | - | chr1_2:14373627-14373646 | Msa0058110:CDS | 55.0% | |
| ATTTCCTCCTCCGACACCAC+CGG | + | chr1_2:14373683-14373702 | None:intergenic | 55.0% | |
| GATTCCATTGCGGGGAATGC+TGG | - | chr1_2:14373713-14373732 | Msa0058110:CDS | 55.0% | |
| GGGGTGGGATTGTTCAGGCA+AGG | + | chr1_2:14369638-14369657 | None:intergenic | 60.0% | |
| AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1_2:14373205-14373224 | Msa0058110:intron | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | - | chr1_2:14373212-14373231 | Msa0058110:intron | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | + | chr1_2:14373436-14373455 | None:intergenic | 60.0% | |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1_2:14373458-14373477 | Msa0058110:intron | 60.0% |
| GCATCCAGGCACAGCGCAAA+GGG | + | chr1_2:14373492-14373511 | None:intergenic | 60.0% | |
| CTTTGCGCTGTGCCTGGATG+CGG | - | chr1_2:14373491-14373510 | Msa0058110:CDS | 60.0% | |
| AGGGCCCACGACAATTCGGT+TGG | - | chr1_2:14373581-14373600 | Msa0058110:CDS | 60.0% | |
| ! | GGTGGTGTCGGAGGAGGAAA+TGG | - | chr1_2:14373682-14373701 | Msa0058110:CDS | 60.0% |
| ACTCCCAGCATTCCCCGCAA+TGG | + | chr1_2:14373720-14373739 | None:intergenic | 60.0% | |
| AATCCCCGGTGTGCCGCAGA+TGG | - | chr1_2:14373401-14373420 | Msa0058110:intron | 65.0% | |
| TTGCCATCTGCGGCACACCG+GGG | + | chr1_2:14373407-14373426 | None:intergenic | 65.0% | |
| GTTGCCATCTGCGGCACACC+GGG | + | chr1_2:14373408-14373427 | None:intergenic | 65.0% | |
| CGTTGCCATCTGCGGCACAC+CGG | + | chr1_2:14373409-14373428 | None:intergenic | 65.0% | |
| AGGCACAGCGCAAAGGGTGG+AGG | + | chr1_2:14373486-14373505 | None:intergenic | 65.0% | |
| TCCACCCTTTGCGCTGTGCC+TGG | - | chr1_2:14373485-14373504 | Msa0058110:CDS | 65.0% | |
| TCCAGGCACAGCGCAAAGGG+TGG | + | chr1_2:14373489-14373508 | None:intergenic | 65.0% | |
| CGCATCCAGGCACAGCGCAA+AGG | + | chr1_2:14373493-14373512 | None:intergenic | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1_2:14373643-14373662 | Msa0058110:CDS | 65.0% | |
| CGCCACGCGCTTCACTTTCC+CGG | + | chr1_2:14373648-14373667 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1_2:14373646-14373665 | Msa0058110:CDS | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1_2:14373649-14373668 | Msa0058110:CDS | 65.0% | |
| ! | GGAAGGTGCACCGGTGGTGT+CGG | - | chr1_2:14373670-14373689 | Msa0058110:CDS | 65.0% |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1_2:14373653-14373672 | Msa0058110:CDS | 70.0% |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1_2:14373661-14373680 | Msa0058110:CDS | 70.0% |
| ! | AGGTGCACCGGTGGTGTCGG+AGG | - | chr1_2:14373673-14373692 | Msa0058110:CDS | 70.0% |
| ! | TGCACCGGTGGTGTCGGAGG+AGG | - | chr1_2:14373676-14373695 | Msa0058110:CDS | 70.0% |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1_2:14373664-14373683 | Msa0058110:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 14369499 | 14374122 | 14369499 | ID=Msa0058110;Name=Msa0058110 |
| chr1_2 | mRNA | 14369499 | 14374122 | 14369499 | ID=Msa0058110-mRNA-1;Parent=Msa0058110;Name=Msa0058110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|1|1|3|296|415 |
| chr1_2 | exon | 14369499 | 14370414 | 14369499 | ID=Msa0058110-mRNA-1:exon:5730;Parent=Msa0058110-mRNA-1 |
| chr1_2 | exon | 14372713 | 14372813 | 14372713 | ID=Msa0058110-mRNA-1:exon:5729;Parent=Msa0058110-mRNA-1 |
| chr1_2 | exon | 14373476 | 14374122 | 14373476 | ID=Msa0058110-mRNA-1:exon:5728;Parent=Msa0058110-mRNA-1 |
| chr1_2 | five_prime_UTR | 14374003 | 14374122 | 14374003 | ID=Msa0058110-mRNA-1:five_prime_utr;Parent=Msa0058110-mRNA-1 |
| chr1_2 | CDS | 14373476 | 14374002 | 14373476 | ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1 |
| chr1_2 | CDS | 14372713 | 14372813 | 14372713 | ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1 |
| chr1_2 | CDS | 14369795 | 14370414 | 14369795 | ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1 |
| chr1_2 | three_prime_UTR | 14369499 | 14369794 | 14369499 | ID=Msa0058110-mRNA-1:three_prime_utr;Parent=Msa0058110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
