AlfalfaGEDB | Msa0058110

M. sativa cultivar zhongmu-4 / Msa0058110

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058110	XP_003589472.1	94.928	414	10	2	1	414	1	403	0.0	797

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058110	G7I760	94.928	414	10	2	1	414	1	403	0.0	797

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TFs/TRs:

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Gene ID	Type	Classification
Msa0058110	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0058110	Msa0147100	0.816801	4.584697e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058110	MtrunA17_Chr1g0156521	94.928	414	10	2	1	414	1	403	0.0	797
Msa0058110	MtrunA17_Chr3g0114991	60.584	274	85	8	155	411	183	450	1.24e-108	327
Msa0058110	MtrunA17_Chr4g0042091	50.833	240	105	3	182	411	200	436	1.26e-70	229
Msa0058110	MtrunA17_Chr3g0104431	44.151	265	121	10	167	412	133	389	1.61e-59	198
Msa0058110	MtrunA17_Chr2g0280501	34.127	378	223	10	51	411	8	376	1.38e-52	180
Msa0058110	MtrunA17_Chr5g0399041	40.097	207	100	7	209	412	105	290	7.95e-38	138
Msa0058110	MtrunA17_Chr4g0056461	40.609	197	86	6	220	412	106	275	9.08e-38	138
Msa0058110	MtrunA17_Chr8g0376191	38.596	171	90	4	251	412	2	166	1.02e-30	115
Msa0058110	MtrunA17_Chr2g0280521	48.113	106	55	0	216	321	10	115	5.12e-25	99.4
Msa0058110	MtrunA17_Chr5g0445321	32.642	193	113	7	225	410	1	183	5.71e-25	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058110	AT1G75710.1	60.991	464	126	14	1	413	1	460	2.59e-167	478
Msa0058110	AT4G27240.1	39.486	428	196	12	32	411	18	430	1.79e-74	239
Msa0058110	AT5G54630.1	49.388	245	98	5	187	411	233	471	4.48e-69	226
Msa0058110	AT4G27240.2	38.557	402	184	12	32	385	18	404	5.87e-62	206
Msa0058110	AT2G29660.1	42.972	249	116	7	187	412	128	373	2.79e-54	184
Msa0058110	AT1G11490.2	37.109	256	137	7	176	411	113	364	5.32e-41	149
Msa0058110	AT1G11490.1	37.109	256	137	7	176	411	113	364	5.32e-41	149
Msa0058110	AT4G12450.1	35.160	219	100	5	204	412	91	277	3.32e-32	123
Msa0058110	AT4G22560.1	37.981	208	90	6	209	412	92	264	6.65e-31	119
Msa0058110	AT1G62520.1	36.585	205	104	7	210	412	100	280	1.82e-29	116

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Find 120 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTATTCTCTCTTTCA+TGG	0.342333	1_2:+14374032	None:intergenic
AAACAAGGAAGAATAGCTCT+TGG	0.523135	1_2:+14369826	None:intergenic
AAACATTATGTTAACCTGCT+AGG	0.471824	1_2:+14373461	None:intergenic
AAATGTATTCTCTCTTTCAT+GGG	0.462519	1_2:+14374033	None:intergenic
AACATCTCTAAAGCTACAAA+TGG	0.420366	1_2:+14373724	None:intergenic
AACATTATGTTAACCTGCTA+GGG	0.496126	1_2:+14373462	None:intergenic
AATAATGGTTACTCAAAATT+AGG	0.218019	1_2:-14373761	Msa0058110:CDS
AATCCCCGGTGTGCCGCAGA+TGG	0.542426	1_2:-14370198	Msa0058110:CDS
AATGTATTCTCTCTTTCATG+GGG	0.602466	1_2:+14374034	None:intergenic
ACACACAACGAACAATCCAA+CGG	0.693116	1_2:-14370275	Msa0058110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTATTCTCTCTTTCATG+GGG	+	chr1_2:14369568-14369587	None:intergenic	30.0%
AACATTATGTTAACCTGCTA+GGG	+	chr1_2:14370140-14370159	None:intergenic	30.0%
AAACATTATGTTAACCTGCT+AGG	+	chr1_2:14370141-14370160	None:intergenic	30.0%
CTTCTATTCCAATTAATGCA+CGG	-	chr1_2:14371149-14371168	Msa0058110:intron	30.0%
CTAAAATTGAATCATGTGTG+TGG	-	chr1_2:14371283-14371302	Msa0058110:intron	30.0%
AAAATTGAATCATGTGTGTG+GGG	-	chr1_2:14371285-14371304	Msa0058110:intron	30.0%
TACTAAGATAATGACATGCA+CGG	+	chr1_2:14371371-14371390	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr1_2:14371476-14371495	None:intergenic	30.0%
AAAAACAATGGAGAGAGAAA+AGG	-	chr1_2:14371526-14371545	Msa0058110:intron	30.0%
AAAACAATGGAGAGAGAAAA+GGG	-	chr1_2:14371527-14371546	Msa0058110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	14369499	14374122	14369499	ID=Msa0058110;Name=Msa0058110
chr1_2	mRNA	14369499	14374122	14369499	ID=Msa0058110-mRNA-1;Parent=Msa0058110;Name=Msa0058110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120\|1\|1\|1\|1\|1\|3\|296\|415
chr1_2	exon	14369499	14370414	14369499	ID=Msa0058110-mRNA-1:exon:5730;Parent=Msa0058110-mRNA-1
chr1_2	exon	14372713	14372813	14372713	ID=Msa0058110-mRNA-1:exon:5729;Parent=Msa0058110-mRNA-1
chr1_2	exon	14373476	14374122	14373476	ID=Msa0058110-mRNA-1:exon:5728;Parent=Msa0058110-mRNA-1
chr1_2	five_prime_UTR	14374003	14374122	14374003	ID=Msa0058110-mRNA-1:five_prime_utr;Parent=Msa0058110-mRNA-1
chr1_2	CDS	14373476	14374002	14373476	ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1
chr1_2	CDS	14372713	14372813	14372713	ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1
chr1_2	CDS	14369795	14370414	14369795	ID=Msa0058110-mRNA-1:cds;Parent=Msa0058110-mRNA-1
chr1_2	three_prime_UTR	14369499	14369794	14369499	ID=Msa0058110-mRNA-1:three_prime_utr;Parent=Msa0058110-mRNA-1

Gene Sequence

>Msa0058110

ATGGCTCTTCTTAATTCCTTGCCTGAACAATCCCACCCCAAAACCGAAAAAACACTCCCAAAACACAAACAAAAGAACCAAAAACAACAGAAACAAAAACCAAAACCAAAACCAAAACCAAAACAAAAACCACCTTCATCATGGGACCAAATAAAAAACCTCCTAACATGCAAACAGATCGAAGGTTCAAGAGTTCATGATCCTTCAAAACCAAACAACAATAATGGTTACTCAAAATTAGGTTCTTCTTGTAGCTCCATTTGTAGCTTTAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCATAGGTCTGATAATTCATCACCAGAGAGTAGTATCTTGGGTCAAGAAACAAGTTTACTCAAAAGAAAACCTATTACTGCTTCATCAACTCGTTCTGCATCATGTTCTGGGAAATCATCCAACGGTGGAGGAAACTACACATCATCATCATCATCTTCAAGAGGAATGCAGTTTAGGAAGCTATCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTACCAATTCCTAGAAGCACATTATGTCGTTGTGATCAGTGTGGAGAGGTCTTCCCTAAGATTGAAAGCTTGGAACTTCATCAAGCTGTTCGACATGCAGTTTCGGAGCTGGGTCCAGAGGATTCAGGCAGAAACATAGTAGAGATAATCTTCAAATCTAGCTGGTTAAAGAGAGAGACTCCAATGTGCAAGATTGAACGGATACTAAAAGTCCACAACACACAACGAACAATCCAACGGTTCGAGGAATGCAGAGACGCGGTAAAATCCCGTGCATCCAACACCACCAAGAAAAATCCCCGGTGTGCCGCAGATGGCAACGAACTCCTCCGTTTCCACAGCACATCGCTATCGTGTGCACTCGGTGCAAGTGGTTCCTCCACCCTTTGCGCTGTGCCTGGATGCGGAGTTTGCAACATCATCCGGCACGGTTTTCAAAAGAAAGGTGGAGTCAAGACCAATGCTAGTAGTGGTAGGGCCCACGACAATTCGGTTGGAGAAGATTCTAAAAGGGCAATGCTTGTGTGCCGCGTAATTGCCGGGAAAGTGAAGCGCGTGGCGGAGGAAGGTGCACCGGTGGTGTCGGAGGAGGAAATGGTGTGTTTTGATTCCATTGCGGGGAATGCTGGGAGTTACTCTAATCTCGAAGATTTAACTGTTTTCAATCCAAGAGCTATTCTTCCTTGTTTCGTAGTTATTTACAAAGTGCTTCCGTGTTGA

Protein sequence

>Msa0058110

MALLNSLPEQSHPKTEKTLPKHKQKNQKQQKQKPKPKPKPKQKPPSSWDQIKNLLTCKQIEGSRVHDPSKPNNNNGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPITASSTRSASCSGKSSNGGGNYTSSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTLCRCDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRETPMCKIERILKVHNTQRTIQRFEECRDAVKSRASNTTKKNPRCAADGNELLRFHSTSLSCALGASGSSTLCAVPGCGVCNIIRHGFQKKGGVKTNASSGRAHDNSVGEDSKRAMLVCRVIAGKVKRVAEEGAPVVSEEEMVCFDSIAGNAGSYSNLEDLTVFNPRAILPCFVVIYKVLPC*