Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147100 | G7I760 | 95.146 | 412 | 11 | 2 | 1 | 412 | 1 | 403 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0147100 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058110 | Msa0147100 | 0.816801 | 4.584697e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147100 | MtrunA17_Chr1g0156521 | 95.146 | 412 | 11 | 2 | 1 | 412 | 1 | 403 | 0.0 | 794 |
| Msa0147100 | MtrunA17_Chr3g0114991 | 60.584 | 274 | 85 | 8 | 153 | 409 | 183 | 450 | 1.49e-108 | 327 |
| Msa0147100 | MtrunA17_Chr4g0042091 | 50.833 | 240 | 105 | 3 | 180 | 409 | 200 | 436 | 1.41e-70 | 228 |
| Msa0147100 | MtrunA17_Chr3g0104431 | 44.151 | 265 | 121 | 10 | 165 | 410 | 133 | 389 | 1.66e-59 | 198 |
| Msa0147100 | MtrunA17_Chr2g0280501 | 34.127 | 378 | 223 | 10 | 49 | 409 | 8 | 376 | 3.76e-52 | 179 |
| Msa0147100 | MtrunA17_Chr5g0399041 | 40.097 | 207 | 100 | 7 | 207 | 410 | 105 | 290 | 6.34e-38 | 139 |
| Msa0147100 | MtrunA17_Chr4g0056461 | 40.609 | 197 | 86 | 6 | 218 | 410 | 106 | 275 | 1.39e-37 | 137 |
| Msa0147100 | MtrunA17_Chr8g0376191 | 38.596 | 171 | 90 | 4 | 249 | 410 | 2 | 166 | 9.94e-31 | 115 |
| Msa0147100 | MtrunA17_Chr5g0445321 | 32.642 | 193 | 113 | 7 | 223 | 408 | 1 | 183 | 4.61e-25 | 101 |
| Msa0147100 | MtrunA17_Chr2g0280521 | 48.113 | 106 | 55 | 0 | 214 | 319 | 10 | 115 | 5.50e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147100 | AT1G75710.1 | 60.560 | 464 | 126 | 14 | 1 | 411 | 1 | 460 | 4.48e-166 | 474 |
| Msa0147100 | AT4G27240.1 | 39.252 | 428 | 197 | 12 | 30 | 409 | 18 | 430 | 1.38e-74 | 239 |
| Msa0147100 | AT5G54630.1 | 49.388 | 245 | 98 | 5 | 185 | 409 | 233 | 471 | 5.63e-69 | 226 |
| Msa0147100 | AT4G27240.2 | 38.308 | 402 | 185 | 12 | 30 | 383 | 18 | 404 | 3.49e-62 | 207 |
| Msa0147100 | AT2G29660.1 | 42.972 | 249 | 116 | 7 | 185 | 410 | 128 | 373 | 4.68e-54 | 184 |
| Msa0147100 | AT1G11490.2 | 37.109 | 256 | 137 | 7 | 174 | 409 | 113 | 364 | 5.65e-41 | 149 |
| Msa0147100 | AT1G11490.1 | 37.109 | 256 | 137 | 7 | 174 | 409 | 113 | 364 | 5.65e-41 | 149 |
| Msa0147100 | AT4G12450.1 | 35.160 | 219 | 100 | 5 | 202 | 410 | 91 | 277 | 2.22e-32 | 124 |
| Msa0147100 | AT4G22560.1 | 37.981 | 208 | 90 | 6 | 207 | 410 | 92 | 264 | 7.44e-31 | 119 |
| Msa0147100 | AT1G62520.1 | 36.585 | 205 | 104 | 7 | 208 | 410 | 100 | 280 | 1.66e-29 | 116 |
Find 115 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1_4:-6966412 | None:intergenic |
| CATTCCACTACATTATTTAT+AGG | 0.173790 | 1_4:-6969504 | None:intergenic |
| GAGATTGAGGTTGAAGAAAA+AGG | 0.207404 | 1_4:-6965092 | None:intergenic |
| AATAATGGTTACTCAAAATT+AGG | 0.218019 | 1_4:+6965389 | Msa0147100:CDS |
| TCATAAACAATTTGTAAGTT+TGG | 0.232831 | 1_4:-6969348 | None:intergenic |
| CTTCGATCAGTTTGCATGTT+AGG | 0.247545 | 1_4:-6965331 | None:intergenic |
| ACTCGTTCTGCATCATGTTC+TGG | 0.262275 | 1_4:+6965560 | Msa0147100:CDS |
| CGGTTGGAGAAGATTCTAAA+AGG | 0.273622 | 1_4:+6969034 | Msa0147100:CDS |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1_4:-6966367 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1_4:+6965627 | Msa0147100:CDS |
| TCCGCCCTTTGCGCTGTGCC+TGG | 0.318882 | 1_4:+6968922 | Msa0147100:CDS |
| GATTCCATTGCGGGGAATGC+TGG | 0.326389 | 1_4:+6969150 | Msa0147100:CDS |
| CGAGTTGATGAAGCAGTAAC+AGG | 0.341073 | 1_4:-6965542 | None:intergenic |
| AAAATGTATTCTCTCTTTCA+TGG | 0.342333 | 1_4:-6965121 | None:intergenic |
| AGCTTTAGAGATGTTGTTCA+TGG | 0.351657 | 1_4:+6965434 | Msa0147100:CDS |
| GTTTATGATTGTCTTGGATT+TGG | 0.353171 | 1_4:+6969363 | Msa0147100:three_prime_UTR |
| GAGTAACCATTATTGTTGTT+TGG | 0.358892 | 1_4:-6965380 | None:intergenic |
| ATTAGATCTCGTATCAAGAT+TGG | 0.379130 | 1_4:-6969452 | None:intergenic |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1_4:-6966361 | None:intergenic |
| TCAAAACCAAACAACAATAA+TGG | 0.382878 | 1_4:+6965374 | Msa0147100:CDS |
| CAAATTGTTTATGATTGTCT+TGG | 0.385266 | 1_4:+6969357 | Msa0147100:three_prime_UTR |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1_4:+6965490 | Msa0147100:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1_4:-6969082 | None:intergenic |
| CTCGTTCTGCATCATGTTCT+GGG | 0.404522 | 1_4:+6965561 | Msa0147100:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1_4:+6965638 | Msa0147100:CDS |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1_4:-6966411 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1_4:+6966408 | Msa0147100:CDS |
| AACATCTCTAAAGCTACAAA+TGG | 0.420366 | 1_4:-6965426 | None:intergenic |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1_4:+6968649 | Msa0147100:CDS |
| TTAGATCTCGTATCAAGATT+GGG | 0.428870 | 1_4:-6969451 | None:intergenic |
| CTTGTGTGCCGCGTAATTGC+CGG | 0.434569 | 1_4:+6969063 | Msa0147100:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1_4:+6968633 | Msa0147100:intron |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1_4:-6968658 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1_4:+6968634 | Msa0147100:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1_4:-6968777 | None:intergenic |
| GGTGGTGTCGGAGGAGGAAA+TGG | 0.447453 | 1_4:+6969119 | Msa0147100:CDS |
| TTTATTTGGTCCCATGATGA+AGG | 0.458813 | 1_4:-6965302 | None:intergenic |
| AAATGTATTCTCTCTTTCAT+GGG | 0.462519 | 1_4:-6965120 | None:intergenic |
| AGGCACAGCGCAAAGGGCGG+AGG | 0.464910 | 1_4:-6968920 | None:intergenic |
| GCGGAGTTTGCAACATCATC+CGG | 0.466040 | 1_4:+6968947 | Msa0147100:CDS |
| TGCACCGGTGGTGTCGGAGG+AGG | 0.468864 | 1_4:+6969113 | Msa0147100:CDS |
| GCATCCAGGCACAGCGCAAA+GGG | 0.469397 | 1_4:-6968926 | None:intergenic |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1_4:-6965689 | None:intergenic |
| GGAAGGTGCACCGGTGGTGT+CGG | 0.478428 | 1_4:+6969107 | Msa0147100:CDS |
| CTTTGCGCTGTGCCTGGATG+CGG | 0.480876 | 1_4:+6968928 | Msa0147100:CDS |
| ATTCCATTGCGGGGAATGCT+GGG | 0.485252 | 1_4:+6969151 | Msa0147100:CDS |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1_4:+6965491 | Msa0147100:CDS |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1_4:+6968768 | Msa0147100:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1_4:-6968812 | None:intergenic |
| TGGTAGGGCCCACGACAATT+CGG | 0.496075 | 1_4:+6969014 | Msa0147100:CDS |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1_4:-6965688 | None:intergenic |
| CGCATCCAGGCACAGCGCAA+AGG | 0.497238 | 1_4:-6968927 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1_4:+6969086 | Msa0147100:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1_4:-6968813 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1_4:+6965675 | Msa0147100:CDS |
| CATTAAGAAAATAGCTAGAA+TGG | 0.500498 | 1_4:-6965156 | None:intergenic |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1_4:+6966436 | Msa0147100:CDS |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1_4:-6968873 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1_4:+6965456 | Msa0147100:CDS |
| AGGTGCACCGGTGGTGTCGG+AGG | 0.521522 | 1_4:+6969110 | Msa0147100:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1_4:-6969210 | None:intergenic |
| CGATCAGTTTGCATGTTAGG+AGG | 0.535301 | 1_4:-6965328 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1_4:+6969090 | Msa0147100:CDS |
| GGTTGGAGAAGATTCTAAAA+GGG | 0.542282 | 1_4:+6969035 | Msa0147100:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1_4:-6968756 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.550457 | 1_4:-6968940 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1_4:+6965581 | Msa0147100:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1_4:+6968686 | Msa0147100:CDS |
| ATTTGGTCCCATGATGAAGG+TGG | 0.555839 | 1_4:-6965299 | None:intergenic |
| AGACCAATGCTAGTAGTGGT+AGG | 0.560855 | 1_4:+6968998 | Msa0147100:CDS |
| AATCCACGGTGTGCCGCGGA+CGG | 0.561977 | 1_4:+6968838 | Msa0147100:CDS |
| TTGTGTGCCGCGTAATTGCC+GGG | 0.563188 | 1_4:+6969064 | Msa0147100:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1_4:-6965591 | None:intergenic |
| TCACTTTCCCGGCAATTACG+CGG | 0.565013 | 1_4:-6969071 | None:intergenic |
| GGCCCTACCACTACTAGCAT+TGG | 0.565787 | 1_4:-6969001 | None:intergenic |
| ATTTCCTCCTCCGACACCAC+CGG | 0.566681 | 1_4:-6969117 | None:intergenic |
| TTCTCCAACCGAATTGTCGT+GGG | 0.568898 | 1_4:-6969022 | None:intergenic |
| TTGGATTGAGAATTAATGAG+AGG | 0.569672 | 1_4:+6969545 | Msa0147100:three_prime_UTR |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1_4:-6965494 | None:intergenic |
| ACTCCCAGCATTCCCCGCAA+TGG | 0.570065 | 1_4:-6969154 | None:intergenic |
| TCCAGGCACAGCGCAAAGGG+CGG | 0.570368 | 1_4:-6968923 | None:intergenic |
| GAGGAGTTCGTTGCCGTCCG+CGG | 0.571453 | 1_4:-6968851 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1_4:+6969101 | Msa0147100:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1_4:+6968722 | Msa0147100:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.577528 | 1_4:+6968999 | Msa0147100:CDS |
| GGGGTGGGATTGTTCAGGCA+AGG | 0.579076 | 1_4:-6965192 | None:intergenic |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1_4:-6968724 | None:intergenic |
| AGGGCCCACGACAATTCGGT+TGG | 0.586441 | 1_4:+6969018 | Msa0147100:CDS |
| ATCACCTATAAATAATGTAG+TGG | 0.587833 | 1_4:+6969500 | Msa0147100:three_prime_UTR |
| CTTCTCCAACCGAATTGTCG+TGG | 0.589666 | 1_4:-6969023 | None:intergenic |
| TTGCCGTCCGCGGCACACCG+TGG | 0.592005 | 1_4:-6968841 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1_4:+6968642 | Msa0147100:intron |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1_4:+6968895 | Msa0147100:CDS |
| AATGTATTCTCTCTTTCATG+GGG | 0.602466 | 1_4:-6965119 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1_4:+6969098 | Msa0147100:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1_4:+6968886 | Msa0147100:CDS |
| TCATCATCATCATCTTCAAG+AGG | 0.611489 | 1_4:+6965614 | Msa0147100:CDS |
| TAGATCTCGTATCAAGATTG+GGG | 0.619094 | 1_4:-6969450 | None:intergenic |
| GTCAAGACCAATGCTAGTAG+TGG | 0.621391 | 1_4:+6968994 | Msa0147100:CDS |
| CTAACATGCAAACTGATCGA+AGG | 0.646222 | 1_4:+6965332 | Msa0147100:CDS |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1_4:-6969225 | None:intergenic |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1_4:+6969083 | Msa0147100:CDS |
| GTTTGCAACATCATCCGGCA+CGG | 0.666115 | 1_4:+6968952 | Msa0147100:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1_4:+6965575 | Msa0147100:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1_4:-6968879 | None:intergenic |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.677049 | 1_4:+6969080 | Msa0147100:CDS |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1_4:-6968870 | None:intergenic |
| ACTGTGATATCAAACATGCA+AGG | 0.682678 | 1_4:-6969271 | None:intergenic |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1_4:+6968761 | Msa0147100:CDS |
| TCGTTGTGATCAGTGTGGAG+AGG | 0.714771 | 1_4:+6966384 | Msa0147100:CDS |
| ATGTATTCTCTCTTTCATGG+GGG | 0.720417 | 1_4:-6965118 | None:intergenic |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1_4:+6968783 | Msa0147100:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1_4:+6965578 | Msa0147100:CDS |
| TGCAAGGTATTCGATCAACA+CGG | 0.737085 | 1_4:-6969255 | None:intergenic |
| TTATGTCGTTGTGATCAGTG+TGG | 0.816235 | 1_4:+6966379 | Msa0147100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTATAATTATATTT+AGG | + | chr1_4:6965794-6965813 | Msa0147100:intron | 0.0% |
| !! | AAATATTATTTATTATTATT+AGG | + | chr1_4:6968128-6968147 | Msa0147100:intron | 0.0% |
| !!! | ATTTTTTTTTGACAAAATTT+AGG | + | chr1_4:6965824-6965843 | Msa0147100:intron | 10.0% |
| !!! | GTTTTTAAAAATTTGATATA+TGG | + | chr1_4:6965869-6965888 | Msa0147100:intron | 10.0% |
| !!! | ACATAATAATTTTATTCAAT+TGG | - | chr1_4:6967274-6967293 | None:intergenic | 10.0% |
| !!! | GATTTTTATTTCTATTTTAT+TGG | + | chr1_4:6969526-6969545 | Msa0147100:three_prime_UTR | 10.0% |
| !! | AAAGTTATAATTGAAAAATG+TGG | - | chr1_4:6966121-6966140 | None:intergenic | 15.0% |
| !! | GTGAATTATTGTTTAAATTT+AGG | + | chr1_4:6967414-6967433 | Msa0147100:intron | 15.0% |
| !! | ATTATTGTTTAAATTTAGGT+TGG | + | chr1_4:6967418-6967437 | Msa0147100:intron | 15.0% |
| !! | AACTATATAATTATACTAGT+AGG | - | chr1_4:6968362-6968381 | None:intergenic | 15.0% |
| !! | TAATTATGTATAGAGTTTAA+TGG | + | chr1_4:6968396-6968415 | Msa0147100:intron | 15.0% |
| !!! | CATTTTCAACAAATTTTTGA+AGG | - | chr1_4:6965058-6965077 | None:intergenic | 20.0% |
| !!! | CTTCAAAAATTTGTTGAAAA+TGG | + | chr1_4:6965056-6965075 | Msa0147100:five_prime_UTR | 20.0% |
| !! | AATAATGGTTACTCAAAATT+AGG | + | chr1_4:6965389-6965408 | Msa0147100:CDS | 20.0% |
| !! | TTGCTCATAAAATAAGATAT+TGG | - | chr1_4:6966046-6966065 | None:intergenic | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | - | chr1_4:6966089-6966108 | None:intergenic | 20.0% |
| !! | TATAATTGAAAAATGTGGTT+GGG | - | chr1_4:6966116-6966135 | None:intergenic | 20.0% |
| !! | TTATAATTGAAAAATGTGGT+TGG | - | chr1_4:6966117-6966136 | None:intergenic | 20.0% |
| !!! | TTTAAGTCTTTTCATTTCTA+AGG | + | chr1_4:6966259-6966278 | Msa0147100:intron | 20.0% |
| !!! | GCTAAGTAATTAATTTTCAT+AGG | - | chr1_4:6966306-6966325 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTTTTCATACTC+AGG | + | chr1_4:6966335-6966354 | Msa0147100:intron | 20.0% |
| !! | ATCATACTTTCACTTATATA+TGG | + | chr1_4:6966624-6966643 | Msa0147100:intron | 20.0% |
| !! | TCTCATCAAAAATATCTTTA+TGG | + | chr1_4:6966792-6966811 | Msa0147100:intron | 20.0% |
| !! | CTCATCAAAAATATCTTTAT+GGG | + | chr1_4:6966793-6966812 | Msa0147100:intron | 20.0% |
| !!! | TCTTTTAATTAGAATACAAG+AGG | - | chr1_4:6967070-6967089 | None:intergenic | 20.0% |
| !! | TTTAGTATAAATATACTCGT+TGG | + | chr1_4:6967116-6967135 | Msa0147100:intron | 20.0% |
| !! | TGATAAATTGTGAATGTAAT+CGG | - | chr1_4:6967614-6967633 | None:intergenic | 20.0% |
| !!! | TAGGAATCTAATTCTTTTTA+TGG | + | chr1_4:6968035-6968054 | Msa0147100:intron | 20.0% |
| !! | AAGTATACTTATAGATTCTT+AGG | + | chr1_4:6968560-6968579 | Msa0147100:intron | 20.0% |
| !!! | TAGGAATATTCTTATTTTCT+TGG | + | chr1_4:6968579-6968598 | Msa0147100:intron | 20.0% |
| !! | TCATAAACAATTTGTAAGTT+TGG | - | chr1_4:6969351-6969370 | None:intergenic | 20.0% |
| ! | AAATGTATTCTCTCTTTCAT+GGG | - | chr1_4:6965123-6965142 | None:intergenic | 25.0% |
| ! | AAAATGTATTCTCTCTTTCA+TGG | - | chr1_4:6965124-6965143 | None:intergenic | 25.0% |
| ! | CATTAAGAAAATAGCTAGAA+TGG | - | chr1_4:6965159-6965178 | None:intergenic | 25.0% |
| !!! | CATTCTAGCTATTTTCTTAA+TGG | + | chr1_4:6965157-6965176 | Msa0147100:exon | 25.0% |
| !!! | GTTTTTGTTTCTGTTGTTTT+TGG | - | chr1_4:6965256-6965275 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGGTTTTGGTTT+TGG | - | chr1_4:6965278-6965297 | None:intergenic | 25.0% |
| !!! | ATGTTAGGAGGTTTTTTATT+TGG | - | chr1_4:6965319-6965338 | None:intergenic | 25.0% |
| !!! | TTATTGTTGTTTGGTTTTGA+AGG | - | chr1_4:6965374-6965393 | None:intergenic | 25.0% |
| ! | TCAAAACCAAACAACAATAA+TGG | + | chr1_4:6965374-6965393 | Msa0147100:CDS | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | + | chr1_4:6965914-6965933 | Msa0147100:intron | 25.0% |
| !! | ATTTTATGAGCAATCTACTT+TGG | + | chr1_4:6966053-6966072 | Msa0147100:intron | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | - | chr1_4:6966546-6966565 | None:intergenic | 25.0% |
| ! | TATAGTAAATGTGATACGAA+AGG | - | chr1_4:6966584-6966603 | None:intergenic | 25.0% |
| ! | GAATAGAAGAGTTAATATGT+TGG | - | chr1_4:6966687-6966706 | None:intergenic | 25.0% |
| ! | AACTAACAAGAATTTAGATG+TGG | + | chr1_4:6966722-6966741 | Msa0147100:intron | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | - | chr1_4:6966826-6966845 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | - | chr1_4:6966827-6966846 | None:intergenic | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | + | chr1_4:6966833-6966852 | Msa0147100:intron | 25.0% |
| !!! | TTTTCTAGTTATCTTCTTCT+TGG | + | chr1_4:6966969-6966988 | Msa0147100:intron | 25.0% |
| ! | GTGTCTAAATTATCTTTAAC+CGG | + | chr1_4:6967035-6967054 | Msa0147100:intron | 25.0% |
| !! | AACAAACTCTTTTCATTAGT+TGG | - | chr1_4:6967307-6967326 | None:intergenic | 25.0% |
| ! | GTGTTACAAAATGTATTGTT+AGG | + | chr1_4:6967336-6967355 | Msa0147100:intron | 25.0% |
| ! | TTGTTAGGACAAATTAACAT+CGG | + | chr1_4:6967351-6967370 | Msa0147100:intron | 25.0% |
| !! | TAGTTTTCTATCGTATGATA+TGG | - | chr1_4:6967900-6967919 | None:intergenic | 25.0% |
| ! | TGAGCATGCATAAAAAAAAT+TGG | - | chr1_4:6968539-6968558 | None:intergenic | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | - | chr1_4:6969228-6969247 | None:intergenic | 25.0% |
| ! | CAAATTGTTTATGATTGTCT+TGG | + | chr1_4:6969357-6969376 | Msa0147100:three_prime_UTR | 25.0% |
| ! | ATCACCTATAAATAATGTAG+TGG | + | chr1_4:6969500-6969519 | Msa0147100:three_prime_UTR | 25.0% |
| ! | CATTCCACTACATTATTTAT+AGG | - | chr1_4:6969507-6969526 | None:intergenic | 25.0% |
| AATGTATTCTCTCTTTCATG+GGG | - | chr1_4:6965122-6965141 | None:intergenic | 30.0% | |
| !! | GGTTCTTTTGTTTGTGTTTT+GGG | - | chr1_4:6965235-6965254 | None:intergenic | 30.0% |
| !! | TGGTTCTTTTGTTTGTGTTT+TGG | - | chr1_4:6965236-6965255 | None:intergenic | 30.0% |
| ! | GAGTAACCATTATTGTTGTT+TGG | - | chr1_4:6965383-6965402 | None:intergenic | 30.0% |
| !! | AACATCTCTAAAGCTACAAA+TGG | - | chr1_4:6965429-6965448 | None:intergenic | 30.0% |
| AACATTATGTTAACCTGCTA+GGG | - | chr1_4:6965691-6965710 | None:intergenic | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | - | chr1_4:6965692-6965711 | None:intergenic | 30.0% | |
| CTTCTATTCCAATTAATGCA+CGG | + | chr1_4:6966698-6966717 | Msa0147100:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | + | chr1_4:6966832-6966851 | Msa0147100:intron | 30.0% | |
| AAAATTGAATCATGTGTGTG+GGG | + | chr1_4:6966834-6966853 | Msa0147100:intron | 30.0% | |
| ! | CATCTTCGAAATTTGAAACA+AGG | + | chr1_4:6966874-6966893 | Msa0147100:intron | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | + | chr1_4:6966878-6966897 | Msa0147100:intron | 30.0% |
| TACTAAGATAATGACATGCA+CGG | - | chr1_4:6966920-6966939 | None:intergenic | 30.0% | |
| AAATATCTTCTAGTACTGCT+GGG | + | chr1_4:6967148-6967167 | Msa0147100:intron | 30.0% | |
| !! | GTTTAAATTTAGGTTGGTAG+AGG | + | chr1_4:6967424-6967443 | Msa0147100:intron | 30.0% |
| ! | CATAACAAATGCACTTGTTT+TGG | - | chr1_4:6967649-6967668 | None:intergenic | 30.0% |
| !! | AAACAAGTGCATTTGTTATG+AGG | + | chr1_4:6967649-6967668 | Msa0147100:intron | 30.0% |
| !!! | TTTTTTGGGTGAATGAAACA+GGG | - | chr1_4:6967700-6967719 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGGTGAATGAAAC+AGG | - | chr1_4:6967701-6967720 | None:intergenic | 30.0% |
| TAGTGTCAGTTTCTTATATG+TGG | - | chr1_4:6967833-6967852 | None:intergenic | 30.0% | |
| CAAATACACTACTACTACAA+TGG | + | chr1_4:6967867-6967886 | Msa0147100:intron | 30.0% | |
| ! | CCTTGGTTTGAATTTCTATA+TGG | - | chr1_4:6967997-6968016 | None:intergenic | 30.0% |
| CCATATAGAAATTCAAACCA+AGG | + | chr1_4:6967994-6968013 | Msa0147100:intron | 30.0% | |
| ATTAATTCACCTTGTTACGA+TGG | - | chr1_4:6968172-6968191 | None:intergenic | 30.0% | |
| ! | TTGTACTTGTTGAACAGTTT+CGG | + | chr1_4:6968627-6968646 | Msa0147100:intron | 30.0% |
| AGATAATCTTCAAATCTAGC+TGG | + | chr1_4:6968686-6968705 | Msa0147100:CDS | 30.0% | |
| GTTTATGATTGTCTTGGATT+TGG | + | chr1_4:6969363-6969382 | Msa0147100:three_prime_UTR | 30.0% | |
| TTAGATCTCGTATCAAGATT+GGG | - | chr1_4:6969454-6969473 | None:intergenic | 30.0% | |
| ATTAGATCTCGTATCAAGAT+TGG | - | chr1_4:6969455-6969474 | None:intergenic | 30.0% | |
| TTGGATTGAGAATTAATGAG+AGG | + | chr1_4:6969545-6969564 | Msa0147100:three_prime_UTR | 30.0% | |
| TTGAGGTTGAAGAAAAAGGT+TGG | - | chr1_4:6965091-6965110 | None:intergenic | 35.0% | |
| GAGATTGAGGTTGAAGAAAA+AGG | - | chr1_4:6965095-6965114 | None:intergenic | 35.0% | |
| ATGTATTCTCTCTTTCATGG+GGG | - | chr1_4:6965121-6965140 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGGAGTGTTTTTT+CGG | - | chr1_4:6965222-6965241 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTTGTTTTGGTTT+TGG | - | chr1_4:6965284-6965303 | None:intergenic | 35.0% |
| !! | GATGAAGGTGGTTTTTGTTT+TGG | - | chr1_4:6965290-6965309 | None:intergenic | 35.0% |
| AACAAAAACCACCTTCATCA+TGG | + | chr1_4:6965291-6965310 | Msa0147100:CDS | 35.0% | |
| ACAAAAACCACCTTCATCAT+GGG | + | chr1_4:6965292-6965311 | Msa0147100:CDS | 35.0% | |
| TTTATTTGGTCCCATGATGA+AGG | - | chr1_4:6965305-6965324 | None:intergenic | 35.0% | |
| !! | AGCTTTAGAGATGTTGTTCA+TGG | + | chr1_4:6965434-6965453 | Msa0147100:CDS | 35.0% |
| GAAACACTAGAGTTGTTCAT+AGG | + | chr1_4:6965456-6965475 | Msa0147100:CDS | 35.0% | |
| TCATCATCATCATCTTCAAG+AGG | + | chr1_4:6965614-6965633 | Msa0147100:CDS | 35.0% | |
| ! | CATAATGTGCTTCTAGGAAT+TGG | - | chr1_4:6966364-6966383 | None:intergenic | 35.0% |
| GTTCCAAGCTTTCAATCTTA+GGG | - | chr1_4:6966414-6966433 | None:intergenic | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | - | chr1_4:6966415-6966434 | None:intergenic | 35.0% | |
| !! | AACATTAGCTTTGCTAGTAG+TGG | - | chr1_4:6966651-6966670 | None:intergenic | 35.0% |
| GTTAGTTACCGTGCATTAAT+TGG | - | chr1_4:6966709-6966728 | None:intergenic | 35.0% | |
| ! | CTTCGAAATTTGAAACAAGG+AGG | + | chr1_4:6966877-6966896 | Msa0147100:intron | 35.0% |
| CAGTACTTGTAAAGCAACTA+GGG | - | chr1_4:6966945-6966964 | None:intergenic | 35.0% | |
| ACAGTACTTGTAAAGCAACT+AGG | - | chr1_4:6966946-6966965 | None:intergenic | 35.0% | |
| GATAATTTAGACACCCCAAA+GGG | - | chr1_4:6967029-6967048 | None:intergenic | 35.0% | |
| AGATAATTTAGACACCCCAA+AGG | - | chr1_4:6967030-6967049 | None:intergenic | 35.0% | |
| !! | ATACAAGAGGTACTCTAATC+CGG | - | chr1_4:6967057-6967076 | None:intergenic | 35.0% |
| CAAATATCTTCTAGTACTGC+TGG | + | chr1_4:6967147-6967166 | Msa0147100:intron | 35.0% | |
| ! | ATCGGTTGAGTTTTGCAAAA+TGG | + | chr1_4:6967369-6967388 | Msa0147100:intron | 35.0% |
| !!! | AACAAATGCACTTGTTTTGG+TGG | - | chr1_4:6967646-6967665 | None:intergenic | 35.0% |
| GTCAGTTTCTTATATGTGGA+TGG | - | chr1_4:6967829-6967848 | None:intergenic | 35.0% | |
| TGTCAACTTAATGTAGTGTC+TGG | - | chr1_4:6967953-6967972 | None:intergenic | 35.0% | |
| ! | GGTTGGAGAAGATTCTAAAA+GGG | + | chr1_4:6969035-6969054 | Msa0147100:CDS | 35.0% |
| AAACAAGGAAGAATAGCTCT+TGG | - | chr1_4:6969213-6969232 | None:intergenic | 35.0% | |
| ACTGTGATATCAAACATGCA+AGG | - | chr1_4:6969274-6969293 | None:intergenic | 35.0% | |
| TAGATCTCGTATCAAGATTG+GGG | - | chr1_4:6969453-6969472 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTCGGTTTTGGGGT+GGG | - | chr1_4:6965210-6965229 | None:intergenic | 40.0% |
| !!! | GGAGTGTTTTTTCGGTTTTG+GGG | - | chr1_4:6965214-6965233 | None:intergenic | 40.0% |
| !!! | GGGAGTGTTTTTTCGGTTTT+GGG | - | chr1_4:6965215-6965234 | None:intergenic | 40.0% |
| !!! | TGGGAGTGTTTTTTCGGTTT+TGG | - | chr1_4:6965216-6965235 | None:intergenic | 40.0% |
| CTTCGATCAGTTTGCATGTT+AGG | - | chr1_4:6965334-6965353 | None:intergenic | 40.0% | |
| CTAACATGCAAACTGATCGA+AGG | + | chr1_4:6965332-6965351 | Msa0147100:CDS | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | + | chr1_4:6965490-6965509 | Msa0147100:CDS | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | + | chr1_4:6965491-6965510 | Msa0147100:CDS | 40.0% | |
| !! | TGTTCTGGGAAATCATCCAA+CGG | + | chr1_4:6965575-6965594 | Msa0147100:CDS | 40.0% |
| CTTCAAGAGGAATGCAGTTT+AGG | + | chr1_4:6965627-6965646 | Msa0147100:CDS | 40.0% | |
| ATGCAGTTTAGGAAGCTATC+TGG | + | chr1_4:6965638-6965657 | Msa0147100:CDS | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | - | chr1_4:6966370-6966389 | None:intergenic | 40.0% | |
| TTATGTCGTTGTGATCAGTG+TGG | + | chr1_4:6966379-6966398 | Msa0147100:CDS | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | + | chr1_4:6966408-6966427 | Msa0147100:CDS | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | + | chr1_4:6966886-6966905 | Msa0147100:intron | 40.0% | |
| AAGATAATGACATGCACGGA+TGG | - | chr1_4:6966916-6966935 | None:intergenic | 40.0% | |
| ! | GGTTTTTCATTTCGACCTCT+TGG | + | chr1_4:6966990-6967009 | Msa0147100:intron | 40.0% |
| TTCATTTCGACCTCTTGGAT+TGG | + | chr1_4:6966995-6967014 | Msa0147100:intron | 40.0% | |
| ! | GATTGGTTATGTAGCCCTTT+GGG | + | chr1_4:6967012-6967031 | Msa0147100:intron | 40.0% |
| ATTGGTTATGTAGCCCTTTG+GGG | + | chr1_4:6967013-6967032 | Msa0147100:intron | 40.0% | |
| AATCAAGAGTTGTCACGTTG+TGG | - | chr1_4:6967798-6967817 | None:intergenic | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | + | chr1_4:6967800-6967819 | Msa0147100:intron | 40.0% | |
| GTGTCTGGCTAATGATAACT+TGG | - | chr1_4:6967938-6967957 | None:intergenic | 40.0% | |
| AGTATCACTCCATCGTAACA+AGG | + | chr1_4:6968160-6968179 | Msa0147100:intron | 40.0% | |
| CTCCAATGTGCAAGATTGAA+CGG | + | chr1_4:6968722-6968741 | Msa0147100:CDS | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | - | chr1_4:6968727-6968746 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | + | chr1_4:6968761-6968780 | Msa0147100:CDS | 40.0% | |
| !!! | TGGATTTTTCTTGGTGGTGT+TGG | - | chr1_4:6968824-6968843 | None:intergenic | 40.0% |
| ACACCACCAAGAAAAATCCA+CGG | + | chr1_4:6968824-6968843 | Msa0147100:CDS | 40.0% | |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | - | chr1_4:6968969-6968988 | None:intergenic | 40.0% |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | + | chr1_4:6968970-6968989 | Msa0147100:CDS | 40.0% |
| CGGTTGGAGAAGATTCTAAA+AGG | + | chr1_4:6969034-6969053 | Msa0147100:CDS | 40.0% | |
| !!! | GGTGTGTTTTGATTCCATTG+CGG | + | chr1_4:6969140-6969159 | Msa0147100:CDS | 40.0% |
| !!! | GTGTGTTTTGATTCCATTGC+GGG | + | chr1_4:6969141-6969160 | Msa0147100:CDS | 40.0% |
| !!! | TGTGTTTTGATTCCATTGCG+GGG | + | chr1_4:6969142-6969161 | Msa0147100:CDS | 40.0% |
| ! | TGCAAGGTATTCGATCAACA+CGG | - | chr1_4:6969258-6969277 | None:intergenic | 40.0% |
| !!! | GTGTTTTTTCGGTTTTGGGG+TGG | - | chr1_4:6965211-6965230 | None:intergenic | 45.0% |
| ATTTGGTCCCATGATGAAGG+TGG | - | chr1_4:6965302-6965321 | None:intergenic | 45.0% | |
| CGATCAGTTTGCATGTTAGG+AGG | - | chr1_4:6965331-6965350 | None:intergenic | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | - | chr1_4:6965497-6965516 | None:intergenic | 45.0% | |
| !! | CGAGTTGATGAAGCAGTAAC+AGG | - | chr1_4:6965545-6965564 | None:intergenic | 45.0% |
| ACTCGTTCTGCATCATGTTC+TGG | + | chr1_4:6965560-6965579 | Msa0147100:CDS | 45.0% | |
| CTCGTTCTGCATCATGTTCT+GGG | + | chr1_4:6965561-6965580 | Msa0147100:CDS | 45.0% | |
| ATAATGACATGCACGGATGG+TGG | - | chr1_4:6966913-6966932 | None:intergenic | 45.0% | |
| GGCTACATAACCAATCCAAG+AGG | - | chr1_4:6967008-6967027 | None:intergenic | 45.0% | |
| !! | GGATTGGTTATGTAGCCCTT+TGG | + | chr1_4:6967011-6967030 | Msa0147100:intron | 45.0% |
| TACGTACGAGATATCACAGC+TGG | + | chr1_4:6967743-6967762 | Msa0147100:intron | 45.0% | |
| TACGAGATATCACAGCTGGA+TGG | + | chr1_4:6967747-6967766 | Msa0147100:intron | 45.0% | |
| GATTCCTAGTCCCTACAACT+CGG | - | chr1_4:6968023-6968042 | None:intergenic | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | + | chr1_4:6968633-6968652 | Msa0147100:intron | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | + | chr1_4:6968634-6968653 | Msa0147100:intron | 45.0% | |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | - | chr1_4:6968661-6968680 | None:intergenic | 45.0% |
| GGATTGTTCGTTGTGTGTTG+TGG | - | chr1_4:6968759-6968778 | None:intergenic | 45.0% | |
| ! | ACACCGTGGATTTTTCTTGG+TGG | - | chr1_4:6968830-6968849 | None:intergenic | 45.0% |
| ATAGCGATGTGCTGTGGAAA+CGG | - | chr1_4:6968876-6968895 | None:intergenic | 45.0% | |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | + | chr1_4:6968967-6968986 | Msa0147100:CDS | 45.0% |
| GTCAAGACCAATGCTAGTAG+TGG | + | chr1_4:6968994-6969013 | Msa0147100:CDS | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | + | chr1_4:6968998-6969017 | Msa0147100:CDS | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | + | chr1_4:6968999-6969018 | Msa0147100:CDS | 45.0% | |
| TTCTCCAACCGAATTGTCGT+GGG | - | chr1_4:6969025-6969044 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTAACAATATTAT+TGG | + | chr1_4:6966006-6966025 | Msa0147100:intron | 5.0% |
| !!! | TAAAACATTTTTATTTTTTT+GGG | - | chr1_4:6967714-6967733 | None:intergenic | 5.0% |
| !!! | TTAAAACATTTTTATTTTTT+TGG | - | chr1_4:6967715-6967734 | None:intergenic | 5.0% |
| TTCATGGGGGAGAGAGATTG+AGG | - | chr1_4:6965108-6965127 | None:intergenic | 50.0% | |
| !!! | GTTTTGGGGTGGGATTGTTC+AGG | - | chr1_4:6965200-6965219 | None:intergenic | 50.0% |
| TCTGGGAAATCATCCAACGG+TGG | + | chr1_4:6965578-6965597 | Msa0147100:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | - | chr1_4:6965594-6965613 | None:intergenic | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | + | chr1_4:6965675-6965694 | Msa0147100:CDS | 50.0% | |
| TCGTTGTGATCAGTGTGGAG+AGG | + | chr1_4:6966384-6966403 | Msa0147100:CDS | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | + | chr1_4:6966436-6966455 | Msa0147100:CDS | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | - | chr1_4:6967795-6967814 | None:intergenic | 50.0% | |
| AACCAAGGTAGCCGAGTTGT+AGG | + | chr1_4:6968009-6968028 | Msa0147100:intron | 50.0% | |
| ACCAAGGTAGCCGAGTTGTA+GGG | + | chr1_4:6968010-6968029 | Msa0147100:intron | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | + | chr1_4:6968768-6968787 | Msa0147100:CDS | 50.0% | |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | - | chr1_4:6968816-6968835 | None:intergenic | 50.0% |
| ! | GGCACACCGTGGATTTTTCT+TGG | - | chr1_4:6968833-6968852 | None:intergenic | 50.0% |
| ACATCGCTATCGTGTGCACT+CGG | + | chr1_4:6968886-6968905 | Msa0147100:CDS | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | - | chr1_4:6968943-6968962 | None:intergenic | 50.0% | |
| GCGGAGTTTGCAACATCATC+CGG | + | chr1_4:6968947-6968966 | Msa0147100:CDS | 50.0% | |
| GTTTGCAACATCATCCGGCA+CGG | + | chr1_4:6968952-6968971 | Msa0147100:CDS | 50.0% | |
| CTTCTCCAACCGAATTGTCG+TGG | - | chr1_4:6969026-6969045 | None:intergenic | 50.0% | |
| TCACTTTCCCGGCAATTACG+CGG | - | chr1_4:6969074-6969093 | None:intergenic | 50.0% | |
| ATTCCATTGCGGGGAATGCT+GGG | + | chr1_4:6969151-6969170 | Msa0147100:CDS | 50.0% | |
| GGGAAATCATCCAACGGTGG+AGG | + | chr1_4:6965581-6965600 | Msa0147100:CDS | 55.0% | |
| AGTTGTCACGTTGTGGAGGC+AGG | - | chr1_4:6967791-6967810 | None:intergenic | 55.0% | |
| TCCCTACAACTCGGCTACCT+TGG | - | chr1_4:6968014-6968033 | None:intergenic | 55.0% | |
| GTAGCCGAGTTGTAGGGACT+AGG | + | chr1_4:6968016-6968035 | Msa0147100:intron | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | - | chr1_4:6968780-6968799 | None:intergenic | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | + | chr1_4:6968783-6968802 | Msa0147100:CDS | 55.0% | |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | - | chr1_4:6968815-6968834 | None:intergenic | 55.0% |
| GAAAAATCCACGGTGTGCCG+CGG | + | chr1_4:6968834-6968853 | Msa0147100:CDS | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | - | chr1_4:6968882-6968901 | None:intergenic | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | - | chr1_4:6969004-6969023 | None:intergenic | 55.0% | |
| TGGTAGGGCCCACGACAATT+CGG | + | chr1_4:6969014-6969033 | Msa0147100:CDS | 55.0% | |
| CTTGTGTGCCGCGTAATTGC+CGG | + | chr1_4:6969063-6969082 | Msa0147100:CDS | 55.0% | |
| TTGTGTGCCGCGTAATTGCC+GGG | + | chr1_4:6969064-6969083 | Msa0147100:CDS | 55.0% | |
| ATTTCCTCCTCCGACACCAC+CGG | - | chr1_4:6969120-6969139 | None:intergenic | 55.0% | |
| GATTCCATTGCGGGGAATGC+TGG | + | chr1_4:6969150-6969169 | Msa0147100:CDS | 55.0% | |
| GGGGTGGGATTGTTCAGGCA+AGG | - | chr1_4:6965195-6965214 | None:intergenic | 60.0% | |
| AGTTTCGGAGCTGGGTCCAG+AGG | + | chr1_4:6968642-6968661 | Msa0147100:intron | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | + | chr1_4:6968649-6968668 | Msa0147100:CDS | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | - | chr1_4:6968873-6968892 | None:intergenic | 60.0% | |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | + | chr1_4:6968895-6968914 | Msa0147100:CDS | 60.0% |
| GCATCCAGGCACAGCGCAAA+GGG | - | chr1_4:6968929-6968948 | None:intergenic | 60.0% | |
| CTTTGCGCTGTGCCTGGATG+CGG | + | chr1_4:6968928-6968947 | Msa0147100:CDS | 60.0% | |
| AGGGCCCACGACAATTCGGT+TGG | + | chr1_4:6969018-6969037 | Msa0147100:CDS | 60.0% | |
| ! | GGTGGTGTCGGAGGAGGAAA+TGG | + | chr1_4:6969119-6969138 | Msa0147100:CDS | 60.0% |
| ACTCCCAGCATTCCCCGCAA+TGG | - | chr1_4:6969157-6969176 | None:intergenic | 60.0% | |
| AATCCACGGTGTGCCGCGGA+CGG | + | chr1_4:6968838-6968857 | Msa0147100:CDS | 65.0% | |
| GAGGAGTTCGTTGCCGTCCG+CGG | - | chr1_4:6968854-6968873 | None:intergenic | 65.0% | |
| TCCAGGCACAGCGCAAAGGG+CGG | - | chr1_4:6968926-6968945 | None:intergenic | 65.0% | |
| CGCATCCAGGCACAGCGCAA+AGG | - | chr1_4:6968930-6968949 | None:intergenic | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | + | chr1_4:6969080-6969099 | Msa0147100:CDS | 65.0% | |
| CGCCACGCGCTTCACTTTCC+CGG | - | chr1_4:6969085-6969104 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | + | chr1_4:6969083-6969102 | Msa0147100:CDS | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | + | chr1_4:6969086-6969105 | Msa0147100:CDS | 65.0% | |
| ! | GGAAGGTGCACCGGTGGTGT+CGG | + | chr1_4:6969107-6969126 | Msa0147100:CDS | 65.0% |
| AGGCACAGCGCAAAGGGCGG+AGG | - | chr1_4:6968923-6968942 | None:intergenic | 70.0% | |
| TCCGCCCTTTGCGCTGTGCC+TGG | + | chr1_4:6968922-6968941 | Msa0147100:CDS | 70.0% | |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | + | chr1_4:6969090-6969109 | Msa0147100:CDS | 70.0% |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | + | chr1_4:6969098-6969117 | Msa0147100:CDS | 70.0% |
| ! | AGGTGCACCGGTGGTGTCGG+AGG | + | chr1_4:6969110-6969129 | Msa0147100:CDS | 70.0% |
| ! | TGCACCGGTGGTGTCGGAGG+AGG | + | chr1_4:6969113-6969132 | Msa0147100:CDS | 70.0% |
| TTGCCGTCCGCGGCACACCG+TGG | - | chr1_4:6968844-6968863 | None:intergenic | 75.0% | |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | + | chr1_4:6969101-6969120 | Msa0147100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6965053 | 6969572 | 6965053 | ID=Msa0147100;Name=Msa0147100 |
| chr1_4 | mRNA | 6965053 | 6969572 | 6965053 | ID=Msa0147100-mRNA-1;Parent=Msa0147100;Name=Msa0147100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|1|1|1|1|3|309|413 |
| chr1_4 | exon | 6965053 | 6965696 | 6965053 | ID=Msa0147100-mRNA-1:exon:3006;Parent=Msa0147100-mRNA-1 |
| chr1_4 | exon | 6966357 | 6966457 | 6966357 | ID=Msa0147100-mRNA-1:exon:3007;Parent=Msa0147100-mRNA-1 |
| chr1_4 | exon | 6968644 | 6969572 | 6968644 | ID=Msa0147100-mRNA-1:exon:3008;Parent=Msa0147100-mRNA-1 |
| chr1_4 | five_prime_UTR | 6965053 | 6965175 | 6965053 | ID=Msa0147100-mRNA-1:five_prime_utr;Parent=Msa0147100-mRNA-1 |
| chr1_4 | CDS | 6965176 | 6965696 | 6965176 | ID=Msa0147100-mRNA-1:cds;Parent=Msa0147100-mRNA-1 |
| chr1_4 | CDS | 6966357 | 6966457 | 6966357 | ID=Msa0147100-mRNA-1:cds;Parent=Msa0147100-mRNA-1 |
| chr1_4 | CDS | 6968644 | 6969263 | 6968644 | ID=Msa0147100-mRNA-1:cds;Parent=Msa0147100-mRNA-1 |
| chr1_4 | three_prime_UTR | 6969264 | 6969572 | 6969264 | ID=Msa0147100-mRNA-1:three_prime_utr;Parent=Msa0147100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
