Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059190 | RHN77729.1 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 1.13e-97 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059190 | A0A396JHM6 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 5.41e-98 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059190 | Msa0059250 | 0.873699 | 1.200724e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059190 | MtrunA17_Chr1g0157891 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 1.04e-101 | 294 |
| Msa0059190 | MtrunA17_Chr1g0157871 | 73.399 | 203 | 24 | 2 | 10 | 182 | 25 | 227 | 1.09e-94 | 286 |
| Msa0059190 | MtrunA17_Chr1g0157941 | 56.098 | 205 | 50 | 5 | 1 | 171 | 16 | 214 | 7.19e-63 | 204 |
| Msa0059190 | MtrunA17_Chr1g0158711 | 37.788 | 217 | 91 | 10 | 3 | 182 | 18 | 227 | 5.61e-32 | 120 |
| Msa0059190 | MtrunA17_Chr1g0158361 | 37.097 | 186 | 77 | 6 | 4 | 155 | 22 | 201 | 5.56e-28 | 107 |
| Msa0059190 | MtrunA17_Chr1g0158391 | 36.538 | 208 | 91 | 8 | 9 | 182 | 23 | 223 | 1.30e-27 | 108 |
| Msa0059190 | MtrunA17_Chr6g0467681 | 35.981 | 214 | 82 | 7 | 1 | 170 | 16 | 218 | 2.19e-26 | 105 |
| Msa0059190 | MtrunA17_Chr6g0467661 | 35.514 | 214 | 83 | 7 | 1 | 170 | 16 | 218 | 2.34e-25 | 102 |
| Msa0059190 | MtrunA17_Chr1g0158471 | 32.883 | 222 | 90 | 7 | 11 | 182 | 32 | 244 | 3.46e-25 | 101 |
| Msa0059190 | MtrunA17_Chr3g0088341 | 34.884 | 215 | 96 | 9 | 9 | 188 | 13 | 218 | 4.57e-25 | 101 |
| Msa0059190 | MtrunA17_Chr1g0158511 | 31.364 | 220 | 96 | 5 | 11 | 182 | 32 | 244 | 2.02e-24 | 99.8 |
| Msa0059190 | MtrunA17_Chr1g0158181 | 38.732 | 142 | 55 | 4 | 12 | 121 | 63 | 204 | 3.96e-23 | 95.9 |
| Msa0059190 | MtrunA17_Chr1g0158051 | 31.884 | 207 | 91 | 6 | 16 | 173 | 60 | 265 | 5.41e-20 | 87.0 |
| Msa0059190 | MtrunA17_Chr1g0158101 | 37.097 | 124 | 58 | 1 | 16 | 119 | 61 | 184 | 8.28e-17 | 77.8 |
| Msa0059190 | MtrunA17_Chr1g0157801 | 28.241 | 216 | 106 | 6 | 8 | 175 | 47 | 261 | 1.21e-16 | 77.4 |
| Msa0059190 | MtrunA17_Chr1g0157971 | 34.146 | 123 | 64 | 1 | 16 | 121 | 59 | 181 | 2.28e-15 | 73.6 |
| Msa0059190 | MtrunA17_Chr1g0157781 | 33.065 | 124 | 65 | 2 | 16 | 121 | 60 | 183 | 3.79e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGTTACTAAAATAA+TGG | 0.242903 | 1_2:-15883692 | None:intergenic |
| CTTGTACACCAGGGTTTCTT+TGG | 0.252727 | 1_2:-15883450 | None:intergenic |
| AAAGAAAGTAATGTTGTTGT+AGG | 0.292213 | 1_2:-15883386 | None:intergenic |
| CGCCGAAAGTGTCGTCGAAT+TGG | 0.342706 | 1_2:+15883507 | Msa0059190:CDS |
| TGCAATCTATGTCACTGATA+TGG | 0.357568 | 1_2:-15883264 | None:intergenic |
| GTCCAATTCGACGACACTTT+CGG | 0.373622 | 1_2:-15883509 | None:intergenic |
| TTCTTTAATTGCTCTTCAGT+TGG | 0.394658 | 1_2:+15883403 | Msa0059190:CDS |
| CATGTGTTAGACCTTGTAAA+TGG | 0.412066 | 1_2:+15883136 | None:intergenic |
| CATTGTTCTGACCATTTACA+AGG | 0.414107 | 1_2:-15883147 | None:intergenic |
| AAAACTATTTGTCAATGTAA+TGG | 0.414732 | 1_2:-15885777 | None:intergenic |
| TGAGTTTCTTCTTTGATTTG+TGG | 0.418600 | 1_2:-15883666 | None:intergenic |
| GAGTACACCATCTGAAAAGC+TGG | 0.470583 | 1_2:+15883425 | Msa0059190:CDS |
| GCGGAATCAGTAGCATAAAT+CGG | 0.504091 | 1_2:-15883487 | None:intergenic |
| TTCTAAACATTGACTAGGAA+AGG | 0.509466 | 1_2:-15883629 | None:intergenic |
| AATTGTTGGTTCAACTATGC+TGG | 0.534142 | 1_2:+15883802 | Msa0059190:CDS |
| GAATTTGCAGGAGCAATTGT+TGG | 0.534993 | 1_2:+15883788 | Msa0059190:intron |
| GACAACATGTCTTGTACACC+AGG | 0.539662 | 1_2:-15883460 | None:intergenic |
| CGTGAACAAGATAAACGAAA+GGG | 0.544518 | 1_2:-15883190 | None:intergenic |
| ATAACGAGCTCTACTTGCAT+TGG | 0.570772 | 1_2:+15883596 | Msa0059190:CDS |
| AGCTGGGACCAAAGAAACCC+TGG | 0.590213 | 1_2:+15883442 | Msa0059190:CDS |
| TCATATTCTAAACATTGACT+AGG | 0.617991 | 1_2:-15883634 | None:intergenic |
| ACGTGAACAAGATAAACGAA+AGG | 0.644939 | 1_2:-15883191 | None:intergenic |
| AGTACACCATCTGAAAAGCT+GGG | 0.647717 | 1_2:+15883426 | Msa0059190:CDS |
| CAATTCGACGACACTTTCGG+CGG | 0.663513 | 1_2:-15883506 | None:intergenic |
| GTGAACAAGATAAACGAAAG+GGG | 0.691807 | 1_2:-15883189 | None:intergenic |
| ACAACATGTCTTGTACACCA+GGG | 0.715947 | 1_2:-15883459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTATATATACCTT+AGG | + | chr1_2:15883720-15883739 | Msa0059190:intron | 10.0% |
| !! | TTAGATTAGATTATAGATTA+TGG | + | chr1_2:15884907-15884926 | Msa0059190:intron | 15.0% |
| !!! | TTTTAGAATAAGAAAATTCA+TGG | - | chr1_2:15885183-15885202 | None:intergenic | 15.0% |
| !! | AGAAGGAATATTATTAATAA+CGG | + | chr1_2:15885208-15885227 | Msa0059190:intron | 15.0% |
| !! | AACCATTATTGTATAAAAAA+GGG | + | chr1_2:15885348-15885367 | Msa0059190:intron | 15.0% |
| !! | ATAATAAATTGAATCAATAC+TGG | - | chr1_2:15885530-15885549 | None:intergenic | 15.0% |
| !!! | AAAATGTTAAAATTTTATGG+TGG | - | chr1_2:15885615-15885634 | None:intergenic | 15.0% |
| !!! | TGGAAAATGTTAAAATTTTA+TGG | - | chr1_2:15885618-15885637 | None:intergenic | 15.0% |
| !!! | ATATGGAATTTTTTTGATAC+TGG | - | chr1_2:15883250-15883269 | None:intergenic | 20.0% |
| !! | TAACAGCAAGTTATTATATA+AGG | + | chr1_2:15883572-15883591 | Msa0059190:intron | 20.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_2:15883776-15883795 | Msa0059190:intron | 20.0% |
| !! | ATTCAATCAAAAGAACTAAT+GGG | - | chr1_2:15885136-15885155 | None:intergenic | 20.0% |
| !! | AATTCAATCAAAAGAACTAA+TGG | - | chr1_2:15885137-15885156 | None:intergenic | 20.0% |
| !! | TATACAATAATGGTTGTAAT+TGG | - | chr1_2:15885343-15885362 | None:intergenic | 20.0% |
| !! | CAACCATTATTGTATAAAAA+AGG | + | chr1_2:15885347-15885366 | Msa0059190:intron | 20.0% |
| !! | ACCATTATTGTATAAAAAAG+GGG | + | chr1_2:15885349-15885368 | Msa0059190:intron | 20.0% |
| !! | AATAGAATGATAAATGACAT+TGG | - | chr1_2:15885422-15885441 | None:intergenic | 20.0% |
| !!! | AGACAACTATATTTTTCATT+TGG | - | chr1_2:15885474-15885493 | None:intergenic | 20.0% |
| !!! | CAAAGTAAAAGTATTTTTCT+TGG | - | chr1_2:15885578-15885597 | None:intergenic | 20.0% |
| !!! | CAAGAAAAATACTTTTACTT+TGG | + | chr1_2:15885576-15885595 | Msa0059190:intron | 20.0% |
| !!! | AAAATACTTTTACTTTGGAT+TGG | + | chr1_2:15885581-15885600 | Msa0059190:intron | 20.0% |
| !! | AAAACTATTTGTCAATGTAA+TGG | - | chr1_2:15885780-15885799 | None:intergenic | 20.0% |
| !!! | TACATTGACAAATAGTTTTA+AGG | + | chr1_2:15885781-15885800 | Msa0059190:CDS | 20.0% |
| !!! | ACATTGACAAATAGTTTTAA+GGG | + | chr1_2:15885782-15885801 | Msa0059190:CDS | 20.0% |
| !!! | TTTTTTGATACTGGTTTTGA+GGG | - | chr1_2:15883241-15883260 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACTGGTTTTG+AGG | - | chr1_2:15883242-15883261 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAAAAGAGACT+AGG | - | chr1_2:15883331-15883350 | None:intergenic | 25.0% |
| ! | AAAGAAAGTAATGTTGTTGT+AGG | - | chr1_2:15883389-15883408 | None:intergenic | 25.0% |
| !!! | ATATAATAACTTGCTGTTAC+TGG | - | chr1_2:15883571-15883590 | None:intergenic | 25.0% |
| !! | TCATATTCTAAACATTGACT+AGG | - | chr1_2:15883637-15883656 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_2:15883691-15883710 | Msa0059190:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_2:15883695-15883714 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_2:15883889-15883908 | Msa0059190:intron | 25.0% |
| ! | TAAATTATCGAGTCAAATTC+TGG | + | chr1_2:15884021-15884040 | Msa0059190:intron | 25.0% |
| ! | AGAGAGTTTATAAATGAAGT+GGG | + | chr1_2:15884082-15884101 | Msa0059190:intron | 25.0% |
| ! | TTCATCATGTTAATGTTGTT+TGG | + | chr1_2:15884119-15884138 | Msa0059190:intron | 25.0% |
| ! | ATTCCAAAAATATCAGACTT+CGG | + | chr1_2:15884382-15884401 | Msa0059190:intron | 25.0% |
| !!! | CGATATTGTACTTTGATTTT+TGG | - | chr1_2:15884425-15884444 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTCTCGAAACTTT+GGG | + | chr1_2:15884485-15884504 | Msa0059190:intron | 25.0% |
| ! | AAGAATACTAAAACAACTAC+TGG | + | chr1_2:15884574-15884593 | Msa0059190:intron | 25.0% |
| ! | GTATTTACAGTTCTATTACT+TGG | - | chr1_2:15884844-15884863 | None:intergenic | 25.0% |
| ! | AAATTCATGGAGATTAACAA+AGG | - | chr1_2:15885170-15885189 | None:intergenic | 25.0% |
| !! | CTTATTCTAAAAGTTGAAGA+AGG | + | chr1_2:15885191-15885210 | Msa0059190:intron | 25.0% |
| !!! | ACCCCTTTTTTATACAATAA+TGG | - | chr1_2:15885353-15885372 | None:intergenic | 25.0% |
| ! | AGAAGAAACAAACAACAAAA+TGG | - | chr1_2:15885638-15885657 | None:intergenic | 25.0% |
| TAGGAAAAATCTGATCGAAA+AGG | - | chr1_2:15883370-15883389 | None:intergenic | 30.0% | |
| TTCTTTAATTGCTCTTCAGT+TGG | + | chr1_2:15883403-15883422 | Msa0059190:CDS | 30.0% | |
| ! | TTCTAAACATTGACTAGGAA+AGG | - | chr1_2:15883632-15883651 | None:intergenic | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_2:15883669-15883688 | None:intergenic | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_2:15883739-15883758 | None:intergenic | 30.0% | |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_2:15883932-15883951 | None:intergenic | 30.0% | |
| AAGATGCTTAGTAATACAGA+GGG | + | chr1_2:15884052-15884071 | Msa0059190:intron | 30.0% | |
| GAGAGAGTTTATAAATGAAG+TGG | + | chr1_2:15884081-15884100 | Msa0059190:intron | 30.0% | |
| TATAAATGAAGTGGGAACTA+TGG | + | chr1_2:15884090-15884109 | Msa0059190:intron | 30.0% | |
| ATAAATGAAGTGGGAACTAT+GGG | + | chr1_2:15884091-15884110 | Msa0059190:intron | 30.0% | |
| TAAAGCACGATAAAATCCAT+CGG | - | chr1_2:15884161-15884180 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAACGAACCATT+CGG | - | chr1_2:15884199-15884218 | None:intergenic | 30.0% |
| TTATTGCAACAAATTGCTCT+AGG | + | chr1_2:15884262-15884281 | Msa0059190:intron | 30.0% | |
| ! | AAACCGAAGTCTGATATTTT+TGG | - | chr1_2:15884388-15884407 | None:intergenic | 30.0% |
| AAGTTTCGAGAAAAAACTTC+AGG | - | chr1_2:15884484-15884503 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTTTCTCGAAACTT+TGG | + | chr1_2:15884484-15884503 | Msa0059190:intron | 30.0% |
| AAGTCTGATATATACAGCTA+CGG | + | chr1_2:15884520-15884539 | Msa0059190:intron | 30.0% | |
| AATACTAAAACAACTACTGG+TGG | + | chr1_2:15884577-15884596 | Msa0059190:intron | 30.0% | |
| ATGGCAATATGAATGTTGTA+AGG | + | chr1_2:15884926-15884945 | Msa0059190:intron | 30.0% | |
| GAATGTCATTCAAGAACTAA+TGG | + | chr1_2:15884954-15884973 | Msa0059190:intron | 30.0% | |
| TAACAGTATGTATACTGAGT+TGG | - | chr1_2:15884980-15884999 | None:intergenic | 30.0% | |
| ! | TAGTGATTAGTTGAATGTCT+TGG | + | chr1_2:15885009-15885028 | Msa0059190:intron | 30.0% |
| CCAACTTGCAAAAATAAAAG+TGG | - | chr1_2:15885247-15885266 | None:intergenic | 30.0% | |
| !!! | CCACTTTTATTTTTGCAAGT+TGG | + | chr1_2:15885244-15885263 | Msa0059190:intron | 30.0% |
| ! | TGCAAGTTGGATATTTATGA+AGG | + | chr1_2:15885257-15885276 | Msa0059190:intron | 30.0% |
| ! | TTGGATATTTATGAAGGTGT+TGG | + | chr1_2:15885263-15885282 | Msa0059190:intron | 30.0% |
| TGGTACTAATATATGTAGAG+AGG | - | chr1_2:15885510-15885529 | None:intergenic | 30.0% | |
| CTGCAAATGTAAACTATTCT+TGG | + | chr1_2:15885661-15885680 | Msa0059190:intron | 30.0% | |
| GTGAACAAGATAAACGAAAG+GGG | - | chr1_2:15883192-15883211 | None:intergenic | 35.0% | |
| CGTGAACAAGATAAACGAAA+GGG | - | chr1_2:15883193-15883212 | None:intergenic | 35.0% | |
| ACGTGAACAAGATAAACGAA+AGG | - | chr1_2:15883194-15883213 | None:intergenic | 35.0% | |
| TGCAATCTATGTCACTGATA+TGG | - | chr1_2:15883267-15883286 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_2:15883802-15883821 | Msa0059190:CDS | 35.0% |
| !!! | ACTATGCTGGTTGTTTTGAT+TGG | + | chr1_2:15883815-15883834 | Msa0059190:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_2:15883846-15883865 | Msa0059190:intron | 35.0% |
| GATCAGTTCAAAGAAAAGCT+TGG | + | chr1_2:15883968-15883987 | Msa0059190:intron | 35.0% | |
| GAAGATGCTTAGTAATACAG+AGG | + | chr1_2:15884051-15884070 | Msa0059190:intron | 35.0% | |
| TTAGTAATACAGAGGGAGAT+GGG | + | chr1_2:15884059-15884078 | Msa0059190:intron | 35.0% | |
| ! | GTTAATGTTGTTTGGTTGCT+TGG | + | chr1_2:15884127-15884146 | Msa0059190:intron | 35.0% |
| !! | GTTTATGACTTTTTCCCGAA+TGG | + | chr1_2:15884181-15884200 | Msa0059190:intron | 35.0% |
| ! | AATTTTGCAACGAACCATTC+GGG | - | chr1_2:15884198-15884217 | None:intergenic | 35.0% |
| GTGAAGATACTCAATTCCAT+TGG | - | chr1_2:15884293-15884312 | None:intergenic | 35.0% | |
| GTATTCTTTGATCACAACCT+TGG | - | chr1_2:15884315-15884334 | None:intergenic | 35.0% | |
| TCATCTAACAAGACATTGTG+AGG | - | chr1_2:15884355-15884374 | None:intergenic | 35.0% | |
| ATACATCCCAATTGATGAAG+AGG | + | chr1_2:15884663-15884682 | Msa0059190:intron | 35.0% | |
| AATCTGCCTCTTCATCAATT+GGG | - | chr1_2:15884672-15884691 | None:intergenic | 35.0% | |
| AAATCTGCCTCTTCATCAAT+TGG | - | chr1_2:15884673-15884692 | None:intergenic | 35.0% | |
| GCAAAGAAACTAGCAATTGT+CGG | + | chr1_2:15884700-15884719 | Msa0059190:intron | 35.0% | |
| ! | TGAACCACAGTTTTCATAGA+CGG | - | chr1_2:15884760-15884779 | None:intergenic | 35.0% |
| !! | GAAGCATTGAAAGGATTTGT+GGG | - | chr1_2:15884817-15884836 | None:intergenic | 35.0% |
| !! | TGAAGCATTGAAAGGATTTG+TGG | - | chr1_2:15884818-15884837 | None:intergenic | 35.0% |
| AGAACTGTAAATACTGTTCC+AGG | + | chr1_2:15884850-15884869 | Msa0059190:intron | 35.0% | |
| !! | AGTTCTGAATTCAAACATCC+TGG | - | chr1_2:15884871-15884890 | None:intergenic | 35.0% |
| TGATGAGTTTGCCTTTGTAT+GGG | + | chr1_2:15885380-15885399 | Msa0059190:intron | 35.0% | |
| CTATTCTTGGATATTGAGCT+AGG | + | chr1_2:15885674-15885693 | Msa0059190:intron | 35.0% | |
| !! | GACTAGGAAGACAGTTTTGT+GGG | - | chr1_2:15883315-15883334 | None:intergenic | 40.0% |
| ! | AGACTAGGAAGACAGTTTTG+TGG | - | chr1_2:15883316-15883335 | None:intergenic | 40.0% |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_2:15883426-15883445 | Msa0059190:CDS | 40.0% | |
| ACAACATGTCTTGTACACCA+GGG | - | chr1_2:15883462-15883481 | None:intergenic | 40.0% | |
| GCGGAATCAGTAGCATAAAT+CGG | - | chr1_2:15883490-15883509 | None:intergenic | 40.0% | |
| ATAACGAGCTCTACTTGCAT+TGG | + | chr1_2:15883596-15883615 | Msa0059190:CDS | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_2:15883788-15883807 | Msa0059190:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_2:15883853-15883872 | Msa0059190:intron | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_2:15883854-15883873 | Msa0059190:intron | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_2:15883974-15883993 | Msa0059190:intron | 40.0% | |
| CTTAGTAATACAGAGGGAGA+TGG | + | chr1_2:15884058-15884077 | Msa0059190:intron | 40.0% | |
| ! | AGGAATACATCCTTGTTGTC+GGG | - | chr1_2:15884232-15884251 | None:intergenic | 40.0% |
| ! | GAGGAATACATCCTTGTTGT+CGG | - | chr1_2:15884233-15884252 | None:intergenic | 40.0% |
| GACAACAAGGATGTATTCCT+CGG | + | chr1_2:15884232-15884251 | Msa0059190:intron | 40.0% | |
| GGAATTGAGTATCTTCACCA+AGG | + | chr1_2:15884295-15884314 | Msa0059190:intron | 40.0% | |
| ATGTTGTTACTGGAGATGGT+TGG | + | chr1_2:15884544-15884563 | Msa0059190:intron | 40.0% | |
| TCCAAGTTCTGTATCCAGAT+TGG | + | chr1_2:15884611-15884630 | Msa0059190:intron | 40.0% | |
| TCCAATCTGGATACAGAACT+TGG | - | chr1_2:15884615-15884634 | None:intergenic | 40.0% | |
| AGTAAACCATGGATCCAATC+TGG | - | chr1_2:15884628-15884647 | None:intergenic | 40.0% | |
| TGGATCCATGGTTTACTTGA+AGG | + | chr1_2:15884631-15884650 | Msa0059190:intron | 40.0% | |
| ATCCATGGTTTACTTGAAGG+TGG | + | chr1_2:15884634-15884653 | Msa0059190:intron | 40.0% | |
| AACTAGCAATTGTCGGACTT+TGG | + | chr1_2:15884707-15884726 | Msa0059190:intron | 40.0% | |
| !! | CTTGGTGATGAAGCATTGAA+AGG | - | chr1_2:15884826-15884845 | None:intergenic | 40.0% |
| !! | TTATGAAGGTGTTGGTGTCA+TGG | + | chr1_2:15885271-15885290 | Msa0059190:intron | 40.0% |
| TCTCTCATGTTTACCACATG+TGG | - | chr1_2:15885306-15885325 | None:intergenic | 40.0% | |
| GTGATGAGTTTGCCTTTGTA+TGG | + | chr1_2:15885379-15885398 | Msa0059190:intron | 40.0% | |
| !!! | CTGGTTTTGAGGGAAACTCA+AGG | - | chr1_2:15883231-15883250 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_2:15883425-15883444 | Msa0059190:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_2:15883435-15883454 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_2:15883453-15883472 | None:intergenic | 45.0% | |
| GACAACATGTCTTGTACACC+AGG | - | chr1_2:15883463-15883482 | None:intergenic | 45.0% | |
| GTCCAATTCGACGACACTTT+CGG | - | chr1_2:15883512-15883531 | None:intergenic | 45.0% | |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_2:15883855-15883874 | Msa0059190:intron | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_2:15883998-15884017 | Msa0059190:intron | 45.0% | |
| !! | TTGCTTGGTTTTTGTGCCGA+TGG | + | chr1_2:15884142-15884161 | Msa0059190:intron | 45.0% |
| CATTTCTTCACCCGACAACA+AGG | + | chr1_2:15884219-15884238 | Msa0059190:intron | 45.0% | |
| ! | ATTGCTCTAGGCATTGCCAA+TGG | + | chr1_2:15884274-15884293 | Msa0059190:intron | 45.0% |
| CAGCTACGGTATGTTGTTAC+TGG | + | chr1_2:15884534-15884553 | Msa0059190:intron | 45.0% | |
| CGGTATGTTGTTACTGGAGA+TGG | + | chr1_2:15884540-15884559 | Msa0059190:intron | 45.0% | |
| TTGTTACTGGAGATGGTTGG+AGG | + | chr1_2:15884547-15884566 | Msa0059190:intron | 45.0% | |
| CTGTATCCAGATTGGATCCA+TGG | + | chr1_2:15884619-15884638 | Msa0059190:intron | 45.0% | |
| CTCCACCTTCAAGTAAACCA+TGG | - | chr1_2:15884639-15884658 | None:intergenic | 45.0% | |
| TCGACCGTCTATGAAAACTG+TGG | + | chr1_2:15884753-15884772 | Msa0059190:intron | 45.0% | |
| ACTGTGGTTCAGATGCTACA+AGG | + | chr1_2:15884769-15884788 | Msa0059190:intron | 45.0% | |
| GTTCAGATGCTACAAGGAGA+TGG | + | chr1_2:15884775-15884794 | Msa0059190:intron | 45.0% | |
| !! | GTGTTGGTGTCATGGATAGA+AGG | + | chr1_2:15885279-15885298 | Msa0059190:intron | 45.0% |
| ATGGATAGAAGGACCACATG+TGG | + | chr1_2:15885290-15885309 | Msa0059190:intron | 45.0% | |
| CATCATGCTCTCCCATACAA+AGG | - | chr1_2:15885394-15885413 | None:intergenic | 45.0% | |
| !! | TTAAAGAAAATAATAATATA+TGG | - | chr1_2:15883759-15883778 | None:intergenic | 5.0% |
| CAATTCGACGACACTTTCGG+CGG | - | chr1_2:15883509-15883528 | None:intergenic | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_2:15883856-15883875 | Msa0059190:intron | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_2:15883862-15883881 | None:intergenic | 50.0% | |
| ACAAGGATGTATTCCTCGGC+TGG | + | chr1_2:15884236-15884255 | Msa0059190:intron | 50.0% | |
| CAAGGATGTATTCCTCGGCT+GGG | + | chr1_2:15884237-15884256 | Msa0059190:intron | 50.0% | |
| AATATCGATGACCGCAGCCA+GGG | + | chr1_2:15884438-15884457 | Msa0059190:intron | 50.0% | |
| CATGTACCCTAAAGTTCCCC+TGG | - | chr1_2:15884458-15884477 | None:intergenic | 50.0% | |
| !! | CAGGGGAACTTTAGGGTACA+TGG | + | chr1_2:15884456-15884475 | Msa0059190:intron | 50.0% |
| ! | TCGGACTTTGGTGCATTCAG+TGG | + | chr1_2:15884719-15884738 | Msa0059190:intron | 50.0% |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_2:15883442-15883461 | Msa0059190:CDS | 55.0% | |
| !! | CGCCGAAAGTGTCGTCGAAT+TGG | + | chr1_2:15883507-15883526 | Msa0059190:CDS | 55.0% |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_2:15883983-15884002 | Msa0059190:intron | 55.0% | |
| GTTGCAATAAGTCCCAGCCG+AGG | - | chr1_2:15884252-15884271 | None:intergenic | 55.0% | |
| CAATATCGATGACCGCAGCC+AGG | + | chr1_2:15884437-15884456 | Msa0059190:intron | 55.0% | |
| ATATCGATGACCGCAGCCAG+GGG | + | chr1_2:15884439-15884458 | Msa0059190:intron | 55.0% | |
| ACCGCAGCCAGGGGAACTTT+AGG | + | chr1_2:15884448-15884467 | Msa0059190:intron | 60.0% | |
| CCCTAAAGTTCCCCTGGCTG+CGG | - | chr1_2:15884452-15884471 | None:intergenic | 60.0% | |
| CCGCAGCCAGGGGAACTTTA+GGG | + | chr1_2:15884449-15884468 | Msa0059190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15883148 | 15885838 | 15883148 | ID=Msa0059190;Name=Msa0059190 |
| chr1_2 | mRNA | 15883148 | 15885838 | 15883148 | ID=Msa0059190-mRNA-1;Parent=Msa0059190;Name=Msa0059190-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.25|0|0.8|0.25|0|5|0|194 |
| chr1_2 | exon | 15883148 | 15883331 | 15883148 | ID=Msa0059190-mRNA-1:exon:6438;Parent=Msa0059190-mRNA-1 |
| chr1_2 | exon | 15883380 | 15883551 | 15883380 | ID=Msa0059190-mRNA-1:exon:6439;Parent=Msa0059190-mRNA-1 |
| chr1_2 | exon | 15883594 | 15883712 | 15883594 | ID=Msa0059190-mRNA-1:exon:6440;Parent=Msa0059190-mRNA-1 |
| chr1_2 | exon | 15883798 | 15883836 | 15883798 | ID=Msa0059190-mRNA-1:exon:6441;Parent=Msa0059190-mRNA-1 |
| chr1_2 | exon | 15885771 | 15885838 | 15885771 | ID=Msa0059190-mRNA-1:exon:6442;Parent=Msa0059190-mRNA-1 |
| chr1_2 | CDS | 15883148 | 15883331 | 15883148 | ID=Msa0059190-mRNA-1:cds;Parent=Msa0059190-mRNA-1 |
| chr1_2 | CDS | 15883380 | 15883551 | 15883380 | ID=Msa0059190-mRNA-1:cds;Parent=Msa0059190-mRNA-1 |
| chr1_2 | CDS | 15883594 | 15883712 | 15883594 | ID=Msa0059190-mRNA-1:cds;Parent=Msa0059190-mRNA-1 |
| chr1_2 | CDS | 15883798 | 15883836 | 15883798 | ID=Msa0059190-mRNA-1:cds;Parent=Msa0059190-mRNA-1 |
| chr1_2 | CDS | 15885771 | 15885838 | 15885771 | ID=Msa0059190-mRNA-1:cds;Parent=Msa0059190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
