Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059250 | RHN77729.1 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 1.13e-97 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059250 | A0A396JHM6 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 5.41e-98 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009390 | Msa0059250 | 0.835948 | 1.246147e-56 | -8.615850e-47 |
| Msa0059190 | Msa0059250 | 0.873699 | 1.200724e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059250 | MtrunA17_Chr1g0157891 | 74.146 | 205 | 23 | 2 | 1 | 175 | 59 | 263 | 1.04e-101 | 294 |
| Msa0059250 | MtrunA17_Chr1g0157871 | 73.399 | 203 | 24 | 2 | 10 | 182 | 25 | 227 | 1.09e-94 | 286 |
| Msa0059250 | MtrunA17_Chr1g0157941 | 56.098 | 205 | 50 | 5 | 1 | 171 | 16 | 214 | 7.19e-63 | 204 |
| Msa0059250 | MtrunA17_Chr1g0158711 | 37.788 | 217 | 91 | 10 | 3 | 182 | 18 | 227 | 5.61e-32 | 120 |
| Msa0059250 | MtrunA17_Chr1g0158361 | 37.097 | 186 | 77 | 6 | 4 | 155 | 22 | 201 | 5.56e-28 | 107 |
| Msa0059250 | MtrunA17_Chr1g0158391 | 36.538 | 208 | 91 | 8 | 9 | 182 | 23 | 223 | 1.30e-27 | 108 |
| Msa0059250 | MtrunA17_Chr6g0467681 | 35.981 | 214 | 82 | 7 | 1 | 170 | 16 | 218 | 2.19e-26 | 105 |
| Msa0059250 | MtrunA17_Chr6g0467661 | 35.514 | 214 | 83 | 7 | 1 | 170 | 16 | 218 | 2.34e-25 | 102 |
| Msa0059250 | MtrunA17_Chr1g0158471 | 32.883 | 222 | 90 | 7 | 11 | 182 | 32 | 244 | 3.46e-25 | 101 |
| Msa0059250 | MtrunA17_Chr3g0088341 | 34.884 | 215 | 96 | 9 | 9 | 188 | 13 | 218 | 4.57e-25 | 101 |
| Msa0059250 | MtrunA17_Chr1g0158511 | 31.364 | 220 | 96 | 5 | 11 | 182 | 32 | 244 | 2.02e-24 | 99.8 |
| Msa0059250 | MtrunA17_Chr1g0158181 | 38.732 | 142 | 55 | 4 | 12 | 121 | 63 | 204 | 3.96e-23 | 95.9 |
| Msa0059250 | MtrunA17_Chr1g0158051 | 31.884 | 207 | 91 | 6 | 16 | 173 | 60 | 265 | 5.41e-20 | 87.0 |
| Msa0059250 | MtrunA17_Chr1g0158101 | 37.097 | 124 | 58 | 1 | 16 | 119 | 61 | 184 | 8.28e-17 | 77.8 |
| Msa0059250 | MtrunA17_Chr1g0157801 | 28.241 | 216 | 106 | 6 | 8 | 175 | 47 | 261 | 1.21e-16 | 77.4 |
| Msa0059250 | MtrunA17_Chr1g0157971 | 34.146 | 123 | 64 | 1 | 16 | 121 | 59 | 181 | 2.28e-15 | 73.6 |
| Msa0059250 | MtrunA17_Chr1g0157781 | 33.065 | 124 | 65 | 2 | 16 | 121 | 60 | 183 | 3.79e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGTTACTAAAATAA+TGG | 0.242903 | 1_2:-15939638 | None:intergenic |
| CTTGTACACCAGGGTTTCTT+TGG | 0.252727 | 1_2:-15939396 | None:intergenic |
| AAAGAAAGTAATGTTGTTGT+AGG | 0.292213 | 1_2:-15939332 | None:intergenic |
| CGCCGAAAGTGTCGTCGAAT+TGG | 0.342706 | 1_2:+15939453 | Msa0059250:CDS |
| TGCAATCTATGTCACTGATA+TGG | 0.357568 | 1_2:-15939210 | None:intergenic |
| GTCCAATTCGACGACACTTT+CGG | 0.373622 | 1_2:-15939455 | None:intergenic |
| TTCTTTAATTGCTCTTCAGT+TGG | 0.394658 | 1_2:+15939349 | Msa0059250:CDS |
| CATGTGTTAGACCTTGTAAA+TGG | 0.412066 | 1_2:+15939082 | None:intergenic |
| CATTGTTCTGACCATTTACA+AGG | 0.414107 | 1_2:-15939093 | None:intergenic |
| AAAACTATTTGTCAATGTAA+TGG | 0.414732 | 1_2:-15941722 | None:intergenic |
| TGAGTTTCTTCTTTGATTTG+TGG | 0.418600 | 1_2:-15939612 | None:intergenic |
| GAGTACACCATCTGAAAAGC+TGG | 0.470583 | 1_2:+15939371 | Msa0059250:CDS |
| GCGGAATCAGTAGCATAAAT+CGG | 0.504091 | 1_2:-15939433 | None:intergenic |
| TTCTAAACATTGACTAGGAA+AGG | 0.509466 | 1_2:-15939575 | None:intergenic |
| AATTGTTGGTTCAACTATGC+TGG | 0.534142 | 1_2:+15939748 | Msa0059250:CDS |
| GAATTTGCAGGAGCAATTGT+TGG | 0.534993 | 1_2:+15939734 | Msa0059250:intron |
| GACAACATGTCTTGTACACC+AGG | 0.539662 | 1_2:-15939406 | None:intergenic |
| CGTGAACAAGATAAACGAAA+GGG | 0.544518 | 1_2:-15939136 | None:intergenic |
| ATAACGAGCTCTACTTGCAT+TGG | 0.570772 | 1_2:+15939542 | Msa0059250:CDS |
| AGCTGGGACCAAAGAAACCC+TGG | 0.590213 | 1_2:+15939388 | Msa0059250:CDS |
| TCATATTCTAAACATTGACT+AGG | 0.617991 | 1_2:-15939580 | None:intergenic |
| ACGTGAACAAGATAAACGAA+AGG | 0.644939 | 1_2:-15939137 | None:intergenic |
| AGTACACCATCTGAAAAGCT+GGG | 0.647717 | 1_2:+15939372 | Msa0059250:CDS |
| CAATTCGACGACACTTTCGG+CGG | 0.663513 | 1_2:-15939452 | None:intergenic |
| GTGAACAAGATAAACGAAAG+GGG | 0.691807 | 1_2:-15939135 | None:intergenic |
| ACAACATGTCTTGTACACCA+GGG | 0.715947 | 1_2:-15939405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTATATATACCTT+AGG | + | chr1_2:15939666-15939685 | Msa0059250:intron | 10.0% |
| !! | TTAGATTAGATTATAGATTA+TGG | + | chr1_2:15940853-15940872 | Msa0059250:intron | 15.0% |
| !!! | TTTTAGAATAAGAAAATTCA+TGG | - | chr1_2:15941128-15941147 | None:intergenic | 15.0% |
| !! | AGAAGGAATATTATTAATAA+CGG | + | chr1_2:15941153-15941172 | Msa0059250:intron | 15.0% |
| !! | AACCATTATTGTATAAAAAA+GGG | + | chr1_2:15941293-15941312 | Msa0059250:intron | 15.0% |
| !! | ATAATAAATTGAATCAATAC+TGG | - | chr1_2:15941475-15941494 | None:intergenic | 15.0% |
| !!! | AAAATGTTAAAATTTTATGG+TGG | - | chr1_2:15941560-15941579 | None:intergenic | 15.0% |
| !!! | TGGAAAATGTTAAAATTTTA+TGG | - | chr1_2:15941563-15941582 | None:intergenic | 15.0% |
| !!! | ATATGGAATTTTTTTGATAC+TGG | - | chr1_2:15939196-15939215 | None:intergenic | 20.0% |
| !! | TAACAGCAAGTTATTATATA+AGG | + | chr1_2:15939518-15939537 | Msa0059250:intron | 20.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_2:15939722-15939741 | Msa0059250:intron | 20.0% |
| !! | ATTCAATCAAAAGAACTAAT+GGG | - | chr1_2:15941081-15941100 | None:intergenic | 20.0% |
| !! | AATTCAATCAAAAGAACTAA+TGG | - | chr1_2:15941082-15941101 | None:intergenic | 20.0% |
| !! | TATACAATAATGGTTGTAAT+TGG | - | chr1_2:15941288-15941307 | None:intergenic | 20.0% |
| !! | CAACCATTATTGTATAAAAA+AGG | + | chr1_2:15941292-15941311 | Msa0059250:intron | 20.0% |
| !! | ACCATTATTGTATAAAAAAG+GGG | + | chr1_2:15941294-15941313 | Msa0059250:intron | 20.0% |
| !! | AATAGAATGATAAATGACAT+TGG | - | chr1_2:15941367-15941386 | None:intergenic | 20.0% |
| !!! | AGACAACTATATTTTTCATT+TGG | - | chr1_2:15941419-15941438 | None:intergenic | 20.0% |
| !!! | CAAAGTAAAAGTATTTTTCT+TGG | - | chr1_2:15941523-15941542 | None:intergenic | 20.0% |
| !!! | CAAGAAAAATACTTTTACTT+TGG | + | chr1_2:15941521-15941540 | Msa0059250:intron | 20.0% |
| !!! | AAAATACTTTTACTTTGGAT+TGG | + | chr1_2:15941526-15941545 | Msa0059250:intron | 20.0% |
| !! | AAAACTATTTGTCAATGTAA+TGG | - | chr1_2:15941725-15941744 | None:intergenic | 20.0% |
| !!! | TACATTGACAAATAGTTTTA+AGG | + | chr1_2:15941726-15941745 | Msa0059250:CDS | 20.0% |
| !!! | ACATTGACAAATAGTTTTAA+GGG | + | chr1_2:15941727-15941746 | Msa0059250:CDS | 20.0% |
| !!! | TTTTTTGATACTGGTTTTGA+GGG | - | chr1_2:15939187-15939206 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACTGGTTTTG+AGG | - | chr1_2:15939188-15939207 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAAAAGAGACT+AGG | - | chr1_2:15939277-15939296 | None:intergenic | 25.0% |
| ! | AAAGAAAGTAATGTTGTTGT+AGG | - | chr1_2:15939335-15939354 | None:intergenic | 25.0% |
| !!! | ATATAATAACTTGCTGTTAC+TGG | - | chr1_2:15939517-15939536 | None:intergenic | 25.0% |
| !! | TCATATTCTAAACATTGACT+AGG | - | chr1_2:15939583-15939602 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_2:15939637-15939656 | Msa0059250:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_2:15939641-15939660 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_2:15939835-15939854 | Msa0059250:intron | 25.0% |
| ! | TAAATTATCGAGTCAAATTC+TGG | + | chr1_2:15939967-15939986 | Msa0059250:intron | 25.0% |
| ! | AGAGAGTTTATAAATGAAGT+GGG | + | chr1_2:15940028-15940047 | Msa0059250:intron | 25.0% |
| ! | TTCATCATGTTAATGTTGTT+TGG | + | chr1_2:15940065-15940084 | Msa0059250:intron | 25.0% |
| ! | ATTCCAAAAATATCAGACTT+CGG | + | chr1_2:15940328-15940347 | Msa0059250:intron | 25.0% |
| !!! | CGATATTGTACTTTGATTTT+TGG | - | chr1_2:15940371-15940390 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTCTCGAAACTTT+GGG | + | chr1_2:15940431-15940450 | Msa0059250:intron | 25.0% |
| ! | AAGAATACTAAAACAACTAC+TGG | + | chr1_2:15940520-15940539 | Msa0059250:intron | 25.0% |
| ! | GTATTTACAGTTCTATTACT+TGG | - | chr1_2:15940790-15940809 | None:intergenic | 25.0% |
| ! | AAATTCATGGAGATTAACAA+AGG | - | chr1_2:15941115-15941134 | None:intergenic | 25.0% |
| !! | CTTATTCTAAAAGTTGAAGA+AGG | + | chr1_2:15941136-15941155 | Msa0059250:intron | 25.0% |
| !!! | ACCCCTTTTTTATACAATAA+TGG | - | chr1_2:15941298-15941317 | None:intergenic | 25.0% |
| ! | AGAAGAAACAAACAACAAAA+TGG | - | chr1_2:15941583-15941602 | None:intergenic | 25.0% |
| TAGGAAAAATCTGATCGAAA+AGG | - | chr1_2:15939316-15939335 | None:intergenic | 30.0% | |
| TTCTTTAATTGCTCTTCAGT+TGG | + | chr1_2:15939349-15939368 | Msa0059250:CDS | 30.0% | |
| ! | TTCTAAACATTGACTAGGAA+AGG | - | chr1_2:15939578-15939597 | None:intergenic | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_2:15939615-15939634 | None:intergenic | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_2:15939685-15939704 | None:intergenic | 30.0% | |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_2:15939878-15939897 | None:intergenic | 30.0% | |
| AAGATGCTTAGTAATACAGA+GGG | + | chr1_2:15939998-15940017 | Msa0059250:intron | 30.0% | |
| GAGAGAGTTTATAAATGAAG+TGG | + | chr1_2:15940027-15940046 | Msa0059250:intron | 30.0% | |
| TATAAATGAAGTGGGAACTA+TGG | + | chr1_2:15940036-15940055 | Msa0059250:intron | 30.0% | |
| ATAAATGAAGTGGGAACTAT+GGG | + | chr1_2:15940037-15940056 | Msa0059250:intron | 30.0% | |
| TAAAGCACGATAAAATCCAT+CGG | - | chr1_2:15940107-15940126 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAACGAACCATT+CGG | - | chr1_2:15940145-15940164 | None:intergenic | 30.0% |
| TTATTGCAACAAATTGCTCT+AGG | + | chr1_2:15940208-15940227 | Msa0059250:intron | 30.0% | |
| ! | AAACCGAAGTCTGATATTTT+TGG | - | chr1_2:15940334-15940353 | None:intergenic | 30.0% |
| AAGTTTCGAGAAAAAACTTC+AGG | - | chr1_2:15940430-15940449 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTTTCTCGAAACTT+TGG | + | chr1_2:15940430-15940449 | Msa0059250:intron | 30.0% |
| AAGTCTGATATATACAGCTA+CGG | + | chr1_2:15940466-15940485 | Msa0059250:intron | 30.0% | |
| AATACTAAAACAACTACTGG+TGG | + | chr1_2:15940523-15940542 | Msa0059250:intron | 30.0% | |
| ATGGCAATATGAATGTTGTA+AGG | + | chr1_2:15940872-15940891 | Msa0059250:intron | 30.0% | |
| GAATGTCATTCAAGAACTAA+TGG | + | chr1_2:15940900-15940919 | Msa0059250:intron | 30.0% | |
| TAACAGTATGTATACTGAGT+TGG | - | chr1_2:15940926-15940945 | None:intergenic | 30.0% | |
| ! | TAGTGATTAGTTGAATGTCT+TGG | + | chr1_2:15940955-15940974 | Msa0059250:intron | 30.0% |
| CCAACTTGCAAAAATAAAAG+TGG | - | chr1_2:15941192-15941211 | None:intergenic | 30.0% | |
| !!! | CCACTTTTATTTTTGCAAGT+TGG | + | chr1_2:15941189-15941208 | Msa0059250:intron | 30.0% |
| ! | TGCAAGTTGGATATTTATGA+AGG | + | chr1_2:15941202-15941221 | Msa0059250:intron | 30.0% |
| ! | TTGGATATTTATGAAGGTGT+TGG | + | chr1_2:15941208-15941227 | Msa0059250:intron | 30.0% |
| TGGTACTAATATATGTAGAG+AGG | - | chr1_2:15941455-15941474 | None:intergenic | 30.0% | |
| CTGCAAATGTAAACTATTCT+TGG | + | chr1_2:15941606-15941625 | Msa0059250:intron | 30.0% | |
| GTGAACAAGATAAACGAAAG+GGG | - | chr1_2:15939138-15939157 | None:intergenic | 35.0% | |
| CGTGAACAAGATAAACGAAA+GGG | - | chr1_2:15939139-15939158 | None:intergenic | 35.0% | |
| ACGTGAACAAGATAAACGAA+AGG | - | chr1_2:15939140-15939159 | None:intergenic | 35.0% | |
| TGCAATCTATGTCACTGATA+TGG | - | chr1_2:15939213-15939232 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_2:15939748-15939767 | Msa0059250:CDS | 35.0% |
| !!! | ACTATGCTGGTTGTTTTGAT+TGG | + | chr1_2:15939761-15939780 | Msa0059250:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_2:15939792-15939811 | Msa0059250:intron | 35.0% |
| GATCAGTTCAAAGAAAAGCT+TGG | + | chr1_2:15939914-15939933 | Msa0059250:intron | 35.0% | |
| GAAGATGCTTAGTAATACAG+AGG | + | chr1_2:15939997-15940016 | Msa0059250:intron | 35.0% | |
| TTAGTAATACAGAGGGAGAT+GGG | + | chr1_2:15940005-15940024 | Msa0059250:intron | 35.0% | |
| ! | GTTAATGTTGTTTGGTTGCT+TGG | + | chr1_2:15940073-15940092 | Msa0059250:intron | 35.0% |
| !! | GTTTATGACTTTTTCCCGAA+TGG | + | chr1_2:15940127-15940146 | Msa0059250:intron | 35.0% |
| ! | AATTTTGCAACGAACCATTC+GGG | - | chr1_2:15940144-15940163 | None:intergenic | 35.0% |
| GTGAAGATACTCAATTCCAT+TGG | - | chr1_2:15940239-15940258 | None:intergenic | 35.0% | |
| GTATTCTTTGATCACAACCT+TGG | - | chr1_2:15940261-15940280 | None:intergenic | 35.0% | |
| TCATCTAACAAGACATTGTG+AGG | - | chr1_2:15940301-15940320 | None:intergenic | 35.0% | |
| ATACATCCCAATTGATGAAG+AGG | + | chr1_2:15940609-15940628 | Msa0059250:intron | 35.0% | |
| AATCTGCCTCTTCATCAATT+GGG | - | chr1_2:15940618-15940637 | None:intergenic | 35.0% | |
| AAATCTGCCTCTTCATCAAT+TGG | - | chr1_2:15940619-15940638 | None:intergenic | 35.0% | |
| GCAAAGAAACTAGCAATTGT+CGG | + | chr1_2:15940646-15940665 | Msa0059250:intron | 35.0% | |
| ! | TGAACCACAGTTTTCATAGA+CGG | - | chr1_2:15940706-15940725 | None:intergenic | 35.0% |
| !! | GAAGCATTGAAAGGATTTGT+GGG | - | chr1_2:15940763-15940782 | None:intergenic | 35.0% |
| !! | TGAAGCATTGAAAGGATTTG+TGG | - | chr1_2:15940764-15940783 | None:intergenic | 35.0% |
| AGAACTGTAAATACTGTTCC+AGG | + | chr1_2:15940796-15940815 | Msa0059250:intron | 35.0% | |
| !! | AGTTCTGAATTCAAACATCC+TGG | - | chr1_2:15940817-15940836 | None:intergenic | 35.0% |
| TGATGAGTTTGCCTTTGTAT+GGG | + | chr1_2:15941325-15941344 | Msa0059250:intron | 35.0% | |
| CTATTCTTGGATATTGAGCT+AGG | + | chr1_2:15941619-15941638 | Msa0059250:intron | 35.0% | |
| !! | GACTAGGAAGACAGTTTTGT+GGG | - | chr1_2:15939261-15939280 | None:intergenic | 40.0% |
| ! | AGACTAGGAAGACAGTTTTG+TGG | - | chr1_2:15939262-15939281 | None:intergenic | 40.0% |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_2:15939372-15939391 | Msa0059250:CDS | 40.0% | |
| ACAACATGTCTTGTACACCA+GGG | - | chr1_2:15939408-15939427 | None:intergenic | 40.0% | |
| GCGGAATCAGTAGCATAAAT+CGG | - | chr1_2:15939436-15939455 | None:intergenic | 40.0% | |
| ATAACGAGCTCTACTTGCAT+TGG | + | chr1_2:15939542-15939561 | Msa0059250:CDS | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_2:15939734-15939753 | Msa0059250:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_2:15939799-15939818 | Msa0059250:intron | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_2:15939800-15939819 | Msa0059250:intron | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_2:15939920-15939939 | Msa0059250:intron | 40.0% | |
| CTTAGTAATACAGAGGGAGA+TGG | + | chr1_2:15940004-15940023 | Msa0059250:intron | 40.0% | |
| ! | AGGAATACATCCTTGTTGTC+GGG | - | chr1_2:15940178-15940197 | None:intergenic | 40.0% |
| ! | GAGGAATACATCCTTGTTGT+CGG | - | chr1_2:15940179-15940198 | None:intergenic | 40.0% |
| GACAACAAGGATGTATTCCT+CGG | + | chr1_2:15940178-15940197 | Msa0059250:intron | 40.0% | |
| GGAATTGAGTATCTTCACCA+AGG | + | chr1_2:15940241-15940260 | Msa0059250:intron | 40.0% | |
| ATGTTGTTACTGGAGATGGT+TGG | + | chr1_2:15940490-15940509 | Msa0059250:intron | 40.0% | |
| TCCAAGTTCTGTATCCAGAT+TGG | + | chr1_2:15940557-15940576 | Msa0059250:intron | 40.0% | |
| TCCAATCTGGATACAGAACT+TGG | - | chr1_2:15940561-15940580 | None:intergenic | 40.0% | |
| AGTAAACCATGGATCCAATC+TGG | - | chr1_2:15940574-15940593 | None:intergenic | 40.0% | |
| TGGATCCATGGTTTACTTGA+AGG | + | chr1_2:15940577-15940596 | Msa0059250:intron | 40.0% | |
| ATCCATGGTTTACTTGAAGG+TGG | + | chr1_2:15940580-15940599 | Msa0059250:intron | 40.0% | |
| AACTAGCAATTGTCGGACTT+TGG | + | chr1_2:15940653-15940672 | Msa0059250:intron | 40.0% | |
| !! | CTTGGTGATGAAGCATTGAA+AGG | - | chr1_2:15940772-15940791 | None:intergenic | 40.0% |
| !! | TTATGAAGGTGTTGGTGTCA+TGG | + | chr1_2:15941216-15941235 | Msa0059250:intron | 40.0% |
| TCTCTCATGTTTACCACATG+TGG | - | chr1_2:15941251-15941270 | None:intergenic | 40.0% | |
| GTGATGAGTTTGCCTTTGTA+TGG | + | chr1_2:15941324-15941343 | Msa0059250:intron | 40.0% | |
| !!! | CTGGTTTTGAGGGAAACTCA+AGG | - | chr1_2:15939177-15939196 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_2:15939371-15939390 | Msa0059250:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_2:15939381-15939400 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_2:15939399-15939418 | None:intergenic | 45.0% | |
| GACAACATGTCTTGTACACC+AGG | - | chr1_2:15939409-15939428 | None:intergenic | 45.0% | |
| GTCCAATTCGACGACACTTT+CGG | - | chr1_2:15939458-15939477 | None:intergenic | 45.0% | |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_2:15939801-15939820 | Msa0059250:intron | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_2:15939944-15939963 | Msa0059250:intron | 45.0% | |
| !! | TTGCTTGGTTTTTGTGCCGA+TGG | + | chr1_2:15940088-15940107 | Msa0059250:intron | 45.0% |
| CATTTCTTCACCCGACAACA+AGG | + | chr1_2:15940165-15940184 | Msa0059250:intron | 45.0% | |
| ! | ATTGCTCTAGGCATTGCCAA+TGG | + | chr1_2:15940220-15940239 | Msa0059250:intron | 45.0% |
| CAGCTACGGTATGTTGTTAC+TGG | + | chr1_2:15940480-15940499 | Msa0059250:intron | 45.0% | |
| CGGTATGTTGTTACTGGAGA+TGG | + | chr1_2:15940486-15940505 | Msa0059250:intron | 45.0% | |
| TTGTTACTGGAGATGGTTGG+AGG | + | chr1_2:15940493-15940512 | Msa0059250:intron | 45.0% | |
| CTGTATCCAGATTGGATCCA+TGG | + | chr1_2:15940565-15940584 | Msa0059250:intron | 45.0% | |
| CTCCACCTTCAAGTAAACCA+TGG | - | chr1_2:15940585-15940604 | None:intergenic | 45.0% | |
| TCGACCGTCTATGAAAACTG+TGG | + | chr1_2:15940699-15940718 | Msa0059250:intron | 45.0% | |
| ACTGTGGTTCAGATGCTACA+AGG | + | chr1_2:15940715-15940734 | Msa0059250:intron | 45.0% | |
| GTTCAGATGCTACAAGGAGA+TGG | + | chr1_2:15940721-15940740 | Msa0059250:intron | 45.0% | |
| !! | GTGTTGGTGTCATGGATAGA+AGG | + | chr1_2:15941224-15941243 | Msa0059250:intron | 45.0% |
| ATGGATAGAAGGACCACATG+TGG | + | chr1_2:15941235-15941254 | Msa0059250:intron | 45.0% | |
| CATCATGCTCTCCCATACAA+AGG | - | chr1_2:15941339-15941358 | None:intergenic | 45.0% | |
| !! | TTAAAGAAAATAATAATATA+TGG | - | chr1_2:15939705-15939724 | None:intergenic | 5.0% |
| CAATTCGACGACACTTTCGG+CGG | - | chr1_2:15939455-15939474 | None:intergenic | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_2:15939802-15939821 | Msa0059250:intron | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_2:15939808-15939827 | None:intergenic | 50.0% | |
| ACAAGGATGTATTCCTCGGC+TGG | + | chr1_2:15940182-15940201 | Msa0059250:intron | 50.0% | |
| CAAGGATGTATTCCTCGGCT+GGG | + | chr1_2:15940183-15940202 | Msa0059250:intron | 50.0% | |
| AATATCGATGACCGCAGCCA+GGG | + | chr1_2:15940384-15940403 | Msa0059250:intron | 50.0% | |
| CATGTACCCTAAAGTTCCCC+TGG | - | chr1_2:15940404-15940423 | None:intergenic | 50.0% | |
| !! | CAGGGGAACTTTAGGGTACA+TGG | + | chr1_2:15940402-15940421 | Msa0059250:intron | 50.0% |
| ! | TCGGACTTTGGTGCATTCAG+TGG | + | chr1_2:15940665-15940684 | Msa0059250:intron | 50.0% |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_2:15939388-15939407 | Msa0059250:CDS | 55.0% | |
| !! | CGCCGAAAGTGTCGTCGAAT+TGG | + | chr1_2:15939453-15939472 | Msa0059250:CDS | 55.0% |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_2:15939929-15939948 | Msa0059250:intron | 55.0% | |
| GTTGCAATAAGTCCCAGCCG+AGG | - | chr1_2:15940198-15940217 | None:intergenic | 55.0% | |
| CAATATCGATGACCGCAGCC+AGG | + | chr1_2:15940383-15940402 | Msa0059250:intron | 55.0% | |
| ATATCGATGACCGCAGCCAG+GGG | + | chr1_2:15940385-15940404 | Msa0059250:intron | 55.0% | |
| ACCGCAGCCAGGGGAACTTT+AGG | + | chr1_2:15940394-15940413 | Msa0059250:intron | 60.0% | |
| CCCTAAAGTTCCCCTGGCTG+CGG | - | chr1_2:15940398-15940417 | None:intergenic | 60.0% | |
| CCGCAGCCAGGGGAACTTTA+GGG | + | chr1_2:15940395-15940414 | Msa0059250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15939094 | 15941783 | 15939094 | ID=Msa0059250;Name=Msa0059250 |
| chr1_2 | mRNA | 15939094 | 15941783 | 15939094 | ID=Msa0059250-mRNA-1;Parent=Msa0059250;Name=Msa0059250-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.25|0|0.8|0.25|0|5|0|194 |
| chr1_2 | exon | 15939094 | 15939277 | 15939094 | ID=Msa0059250-mRNA-1:exon:6463;Parent=Msa0059250-mRNA-1 |
| chr1_2 | exon | 15939326 | 15939497 | 15939326 | ID=Msa0059250-mRNA-1:exon:6464;Parent=Msa0059250-mRNA-1 |
| chr1_2 | exon | 15939540 | 15939658 | 15939540 | ID=Msa0059250-mRNA-1:exon:6465;Parent=Msa0059250-mRNA-1 |
| chr1_2 | exon | 15939744 | 15939782 | 15939744 | ID=Msa0059250-mRNA-1:exon:6466;Parent=Msa0059250-mRNA-1 |
| chr1_2 | exon | 15941716 | 15941783 | 15941716 | ID=Msa0059250-mRNA-1:exon:6467;Parent=Msa0059250-mRNA-1 |
| chr1_2 | CDS | 15939094 | 15939277 | 15939094 | ID=Msa0059250-mRNA-1:cds;Parent=Msa0059250-mRNA-1 |
| chr1_2 | CDS | 15939326 | 15939497 | 15939326 | ID=Msa0059250-mRNA-1:cds;Parent=Msa0059250-mRNA-1 |
| chr1_2 | CDS | 15939540 | 15939658 | 15939540 | ID=Msa0059250-mRNA-1:cds;Parent=Msa0059250-mRNA-1 |
| chr1_2 | CDS | 15939744 | 15939782 | 15939744 | ID=Msa0059250-mRNA-1:cds;Parent=Msa0059250-mRNA-1 |
| chr1_2 | CDS | 15941716 | 15941783 | 15941716 | ID=Msa0059250-mRNA-1:cds;Parent=Msa0059250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
