Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059560 | XP_013466362.1 | 90.055 | 362 | 24 | 1 | 1 | 350 | 9 | 370 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059560 | sp|Q94BN2|SPSY_ARATH | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.24e-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059560 | A0A072VG69 | 90.055 | 362 | 24 | 1 | 1 | 350 | 9 | 370 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059560 | Msa0139230 | 0.802166 | 6.382793e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059560 | MtrunA17_Chr1g0158851 | 90.055 | 362 | 24 | 1 | 1 | 350 | 9 | 370 | 0.0 | 636 |
| Msa0059560 | MtrunA17_Chr3g0126551 | 77.364 | 349 | 61 | 3 | 9 | 341 | 11 | 357 | 0.0 | 515 |
| Msa0059560 | MtrunA17_Chr5g0413701 | 66.212 | 293 | 94 | 4 | 49 | 338 | 49 | 339 | 2.18e-147 | 419 |
| Msa0059560 | MtrunA17_Chr8g0365071 | 63.051 | 295 | 106 | 3 | 45 | 337 | 44 | 337 | 8.49e-142 | 405 |
| Msa0059560 | MtrunA17_Chr3g0117881 | 58.419 | 291 | 112 | 5 | 52 | 335 | 41 | 329 | 3.22e-115 | 337 |
| Msa0059560 | MtrunA17_Chr5g0394371 | 32.743 | 226 | 143 | 6 | 75 | 295 | 46 | 267 | 7.10e-30 | 116 |
| Msa0059560 | MtrunA17_Chr1g0150851 | 29.845 | 258 | 173 | 6 | 68 | 319 | 56 | 311 | 1.11e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059560 | AT5G53120.1 | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.39e-176 | 492 |
| Msa0059560 | AT5G53120.4 | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.39e-176 | 492 |
| Msa0059560 | AT5G53120.2 | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.39e-176 | 492 |
| Msa0059560 | AT5G53120.5 | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.39e-176 | 492 |
| Msa0059560 | AT5G53120.3 | 73.276 | 348 | 75 | 2 | 9 | 340 | 11 | 356 | 9.39e-176 | 492 |
| Msa0059560 | AT5G53120.7 | 73.276 | 348 | 75 | 2 | 9 | 340 | 28 | 373 | 1.35e-175 | 493 |
| Msa0059560 | AT5G53120.6 | 65.867 | 375 | 83 | 4 | 9 | 340 | 11 | 383 | 2.84e-171 | 482 |
| Msa0059560 | AT1G23820.1 | 64.286 | 294 | 101 | 3 | 44 | 335 | 36 | 327 | 2.90e-143 | 409 |
| Msa0059560 | AT1G70310.1 | 63.946 | 294 | 104 | 2 | 44 | 335 | 40 | 333 | 5.81e-141 | 403 |
| Msa0059560 | AT1G23820.2 | 65.678 | 236 | 79 | 2 | 44 | 277 | 80 | 315 | 2.56e-116 | 340 |
| Msa0059560 | AT5G19530.2 | 30.222 | 225 | 150 | 5 | 68 | 287 | 40 | 262 | 3.54e-29 | 115 |
| Msa0059560 | AT5G19530.1 | 30.222 | 225 | 150 | 5 | 68 | 287 | 47 | 269 | 4.13e-29 | 115 |
Find 61 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATTCTACTGTTGTTTC+TGG | 0.119691 | 1_2:+16737148 | Msa0059560:CDS |
| AACAAATAACTTAACTGTTT+TGG | 0.140133 | 1_2:-16738277 | None:intergenic |
| GTGGAGATGGTGGAGTTCTA+AGG | 0.279701 | 1_2:+16738805 | Msa0059560:CDS |
| TATTTGTGAGATAGATAAAA+TGG | 0.298775 | 1_2:+16738863 | Msa0059560:CDS |
| GCTTCATACTCACCTTATTC+AGG | 0.325838 | 1_2:+16739878 | Msa0059560:CDS |
| ATCAGATTTCCAAGAGATCT+TGG | 0.332522 | 1_2:+16738049 | Msa0059560:CDS |
| TGACACTTTCCCTCAAGTTC+AGG | 0.351768 | 1_2:-16737130 | None:intergenic |
| ATAGCATCATACTTTCCTTC+AGG | 0.354964 | 1_2:-16739206 | None:intergenic |
| TGGAGATCATGTCCTGAATA+AGG | 0.362663 | 1_2:-16739890 | None:intergenic |
| TTAGTTGTTGGTGGTGGAGA+TGG | 0.363986 | 1_2:+16738792 | Msa0059560:CDS |
| AGCAAATGTTTGTTGACAAA+TGG | 0.374139 | 1_2:-16739910 | None:intergenic |
| TTGGCATGCAGTGGTGTGAT+AGG | 0.401422 | 1_2:+16740051 | Msa0059560:intron |
| AATTCCTTCTTGTTGTTTGA+AGG | 0.410076 | 1_2:+16737093 | Msa0059560:CDS |
| CAACATGAGTCACTGAACTA+TGG | 0.419551 | 1_2:-16738839 | None:intergenic |
| CAATAATACCTTGGATATGT+TGG | 0.427530 | 1_2:-16739960 | None:intergenic |
| GGGAAAGTGCTTGTACTTGA+TGG | 0.430517 | 1_2:+16738174 | Msa0059560:CDS |
| ATCGGGTTTACAAAATCAAC+TGG | 0.444824 | 1_2:-16740102 | None:intergenic |
| TTCTTGTTGTTTGAAGGCTA+AGG | 0.458947 | 1_2:+16737099 | Msa0059560:CDS |
| AGAACTTAGGTTCTATAACT+TGG | 0.463452 | 1_2:+16740167 | Msa0059560:CDS |
| ATTCTACTGTTGTTTCTGGA+TGG | 0.465156 | 1_2:+16737152 | Msa0059560:CDS |
| GTTTCAGTCCCTGAACTTGA+GGG | 0.465362 | 1_2:+16737121 | Msa0059560:CDS |
| GACACTTTCCCTCAAGTTCA+GGG | 0.473362 | 1_2:-16737129 | None:intergenic |
| GTTGTTGGTGGTGGAGATGG+TGG | 0.478081 | 1_2:+16738795 | Msa0059560:CDS |
| AGCGGACTTGAGGTCGGAAC+AGG | 0.483195 | 1_2:+16737037 | Msa0059560:CDS |
| TTCTCTACAAGTTCCTGAGC+AGG | 0.489434 | 1_2:-16739783 | None:intergenic |
| ACTTAGGTTCTATAACTTGG+AGG | 0.500692 | 1_2:+16740170 | Msa0059560:CDS |
| CTTTATCTTATGCTCAAAAG+AGG | 0.509069 | 1_2:+16740074 | Msa0059560:CDS |
| GAATTGAACAAAGTGGGAGA+TGG | 0.510843 | 1_2:-16738248 | None:intergenic |
| TCAAATCCAACAGCTAACTC+TGG | 0.513813 | 1_2:-16739001 | None:intergenic |
| GGTTTCAGTCCCTGAACTTG+AGG | 0.517686 | 1_2:+16737120 | Msa0059560:CDS |
| TTTATCTTATGCTCAAAAGA+GGG | 0.518661 | 1_2:+16740075 | Msa0059560:CDS |
| TTGCTTCTGTACGTTATGCA+TGG | 0.518868 | 1_2:+16739928 | Msa0059560:CDS |
| GGAGATGGGCTATCATCTCT+TGG | 0.523329 | 1_2:-16738233 | None:intergenic |
| CTAAGCACATAAGAGAACTT+AGG | 0.523416 | 1_2:+16740154 | Msa0059560:CDS |
| AATTGAACAAAGTGGGAGAT+GGG | 0.529273 | 1_2:-16738247 | None:intergenic |
| TGGAGATGGTGGAGTTCTAA+GGG | 0.538304 | 1_2:+16738806 | Msa0059560:CDS |
| TTTCTTAGATGCACTCCTGA+AGG | 0.543593 | 1_2:+16739191 | Msa0059560:CDS |
| GAACATTATGGACAATATCT+CGG | 0.554498 | 1_2:+16737003 | None:intergenic |
| CCAACATGCAGATACACTCT+AGG | 0.574222 | 1_2:-16739028 | None:intergenic |
| TCACAATCTCAATCTTCCAA+TGG | 0.576050 | 1_2:+16737178 | Msa0059560:CDS |
| GTAACATGGCAGAAAGTATG+TGG | 0.582788 | 1_2:+16739856 | Msa0059560:CDS |
| GTTGATTCCTCTGACCCAGT+TGG | 0.594913 | 1_2:+16739233 | Msa0059560:CDS |
| GTGTATCTGCATGTTGGTGA+TGG | 0.597679 | 1_2:+16739034 | Msa0059560:CDS |
| AAAACGGTGTAGCGGACTTG+AGG | 0.599550 | 1_2:+16737027 | Msa0059560:CDS |
| GGGACTGAATTGAACAAAGT+GGG | 0.612644 | 1_2:-16738254 | None:intergenic |
| TGACATACCAACTGGGTCAG+AGG | 0.613200 | 1_2:-16739240 | None:intergenic |
| CGGTGTAGCGGACTTGAGGT+CGG | 0.621716 | 1_2:+16737031 | Msa0059560:CDS |
| GGGGACTGAATTGAACAAAG+TGG | 0.629263 | 1_2:-16738255 | None:intergenic |
| TTAGCCTTCAAACAACAAGA+AGG | 0.633703 | 1_2:-16737097 | None:intergenic |
| ATGTTACATAGCACTCCACC+AGG | 0.633906 | 1_2:-16739840 | None:intergenic |
| TTATCTTATGCTCAAAAGAG+GGG | 0.634919 | 1_2:+16740076 | Msa0059560:CDS |
| TCAAAGGCATTAAGACCTGG+TGG | 0.642147 | 1_2:+16739825 | Msa0059560:CDS |
| TATTGTTCAGTTGACTGAGA+AGG | 0.643640 | 1_2:+16738197 | Msa0059560:CDS |
| GAATTGTGTAGATATAGAGA+AGG | 0.649083 | 1_2:+16737069 | Msa0059560:CDS |
| CTAGTGTTCCAACATATCCA+AGG | 0.650334 | 1_2:+16739952 | Msa0059560:CDS |
| CCTAGAGTGTATCTGCATGT+TGG | 0.670514 | 1_2:+16739028 | Msa0059560:CDS |
| TTATCAAAGGCATTAAGACC+TGG | 0.670906 | 1_2:+16739822 | Msa0059560:CDS |
| TGGTGGAGTGCTATGTAACA+TGG | 0.684083 | 1_2:+16739842 | Msa0059560:CDS |
| CATGAGTCACTGAACTATGG+CGG | 0.686178 | 1_2:-16738836 | None:intergenic |
| GGGTTTACAAAATCAACTGG+TGG | 0.688551 | 1_2:-16740099 | None:intergenic |
| AATAAAGTGACATACCAACT+GGG | 0.707787 | 1_2:-16739247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTGCATTCT+TGG | + | chr1_2:16737229-16737248 | Msa0059560:intron | 15.0% |
| !!! | TTTTCAGTATTTTTTTAAAC+AGG | + | chr1_2:16737321-16737340 | Msa0059560:intron | 15.0% |
| !! | GTATAAAATTGCTTATAAAA+AGG | - | chr1_2:16737701-16737720 | None:intergenic | 15.0% |
| !! | GCATTAAAATTTCTTTATTA+TGG | + | chr1_2:16738511-16738530 | Msa0059560:intron | 15.0% |
| !! | TAAAATTTCTTTATTATGGT+TGG | + | chr1_2:16738515-16738534 | Msa0059560:intron | 15.0% |
| !! | GAATAATAATAAAATCTGAT+TGG | - | chr1_2:16738557-16738576 | None:intergenic | 15.0% |
| !!! | ATTTTTATACATATGCTAAA+TGG | + | chr1_2:16738748-16738767 | Msa0059560:intron | 15.0% |
| !!! | CTATTTTCTCATATTATTTT+CGG | + | chr1_2:16739654-16739673 | Msa0059560:intron | 15.0% |
| !!! | AAAGTAAATTTTATCTAGAA+AGG | - | chr1_2:16740807-16740826 | None:intergenic | 15.0% |
| !! | ACAAACATATAGTTTAGATT+TGG | - | chr1_2:16737663-16737682 | None:intergenic | 20.0% |
| !! | TAAAAAGGTTTAGTATCTAT+CGG | - | chr1_2:16737686-16737705 | None:intergenic | 20.0% |
| !!! | ACAAATAACTTAACTGTTTT+GGG | - | chr1_2:16738279-16738298 | None:intergenic | 20.0% |
| !!! | AACAAATAACTTAACTGTTT+TGG | - | chr1_2:16738280-16738299 | None:intergenic | 20.0% |
| !! | CTCATTAGATTAAAACAAAA+CGG | - | chr1_2:16738371-16738390 | None:intergenic | 20.0% |
| !! | AACAATCAATAACTAATACT+TGG | - | chr1_2:16738437-16738456 | None:intergenic | 20.0% |
| !!! | TCTTGTTATTATATTTCATG+AGG | + | chr1_2:16738575-16738594 | Msa0059560:intron | 20.0% |
| !! | TATTTGTGAGATAGATAAAA+TGG | + | chr1_2:16738863-16738882 | Msa0059560:CDS | 20.0% |
| !! | TAGAAAATCAATTCTATGAT+TGG | - | chr1_2:16738923-16738942 | None:intergenic | 20.0% |
| !! | TATTAACAAAAAGATACAAG+AGG | - | chr1_2:16739286-16739305 | None:intergenic | 20.0% |
| !! | CAAAGAAATATTATATCCTA+AGG | + | chr1_2:16739350-16739369 | Msa0059560:intron | 20.0% |
| !! | TAGTATATTAAAAAAACCAG+AGG | + | chr1_2:16739533-16739552 | Msa0059560:intron | 20.0% |
| !!! | GAAAATAGAATAATTTGCTT+TGG | - | chr1_2:16739642-16739661 | None:intergenic | 20.0% |
| !!! | TTTGATAATGTCACAAAAAA+TGG | - | chr1_2:16739810-16739829 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGACATTATCAA+AGG | + | chr1_2:16739809-16739828 | Msa0059560:CDS | 20.0% |
| !! | ATCATTAATAAAGGATATGT+TGG | - | chr1_2:16740005-16740024 | None:intergenic | 20.0% |
| !! | TAAGATGCAATCATTAATAA+AGG | - | chr1_2:16740014-16740033 | None:intergenic | 20.0% |
| !!! | AGATTCTAAAATCCTTATTT+TGG | + | chr1_2:16740491-16740510 | Msa0059560:intron | 20.0% |
| !! | GTATTTGAAAATCCAAAATA+AGG | - | chr1_2:16740506-16740525 | None:intergenic | 20.0% |
| ! | AAACACATTAACATAAGTGA+AGG | - | chr1_2:16737269-16737288 | None:intergenic | 25.0% |
| !! | TGTGTTTACGATAATTTTCT+TGG | + | chr1_2:16737282-16737301 | Msa0059560:intron | 25.0% |
| ! | TTTATTTCAACAATCCAATG+TGG | + | chr1_2:16737352-16737371 | Msa0059560:intron | 25.0% |
| ! | ACAAGTATTAGTTATGCAAT+TGG | - | chr1_2:16737388-16737407 | None:intergenic | 25.0% |
| ! | TCTCAAAAAATTTGATGTCA+CGG | - | chr1_2:16737849-16737868 | None:intergenic | 25.0% |
| !!! | ACTTTTAGTATTGATGATGT+TGG | + | chr1_2:16737967-16737986 | Msa0059560:intron | 25.0% |
| ! | AGTAGAAAAAAAATTGTACG+AGG | + | chr1_2:16738022-16738041 | Msa0059560:CDS | 25.0% |
| !! | TTGATTAACACCAATTGTTT+TGG | + | chr1_2:16738131-16738150 | Msa0059560:intron | 25.0% |
| !!! | AAATAACTTAACTGTTTTGG+GGG | - | chr1_2:16738277-16738296 | None:intergenic | 25.0% |
| !! | CAAATAACTTAACTGTTTTG+GGG | - | chr1_2:16738278-16738297 | None:intergenic | 25.0% |
| ! | CAATTGATCATTCATTTACT+AGG | + | chr1_2:16738961-16738980 | Msa0059560:intron | 25.0% |
| !! | CTTTATGTTGAAAGTGTATT+TGG | + | chr1_2:16739590-16739609 | Msa0059560:intron | 25.0% |
| ! | TTTATCTTATGCTCAAAAGA+GGG | + | chr1_2:16740075-16740094 | Msa0059560:CDS | 25.0% |
| ! | TAGAAGCAACAAATATCTTT+GGG | - | chr1_2:16740213-16740232 | None:intergenic | 25.0% |
| !! | AAATATGCATGCATTTTGAA+CGG | + | chr1_2:16740531-16740550 | Msa0059560:intron | 25.0% |
| ! | ATGCTATTATTACTCGAAAA+TGG | - | chr1_2:16740626-16740645 | None:intergenic | 25.0% |
| ! | ACAATAGAAGAAAGAAAAAC+AGG | - | chr1_2:16740707-16740726 | None:intergenic | 25.0% |
| ! | TCAATAGACAGAATAAAACT+TGG | - | chr1_2:16740751-16740770 | None:intergenic | 25.0% |
| GAATTGTGTAGATATAGAGA+AGG | + | chr1_2:16737069-16737088 | Msa0059560:CDS | 30.0% | |
| !! | AATTCCTTCTTGTTGTTTGA+AGG | + | chr1_2:16737093-16737112 | Msa0059560:CDS | 30.0% |
| TGTTGTAGAGAATGTAGAAT+AGG | + | chr1_2:16737442-16737461 | Msa0059560:intron | 30.0% | |
| ACTCTCTAATCTTGATCAAA+TGG | + | chr1_2:16737602-16737621 | Msa0059560:intron | 30.0% | |
| TCTAATCTTGATCAAATGGT+CGG | + | chr1_2:16737606-16737625 | Msa0059560:intron | 30.0% | |
| CACTTGTACAAAAATAGACT+TGG | - | chr1_2:16737723-16737742 | None:intergenic | 30.0% | |
| !! | TGATGTTGGTTTCTATCATT+AGG | + | chr1_2:16737981-16738000 | Msa0059560:intron | 30.0% |
| !!! | TTTTGCAGTCATTAACTTGT+GGG | + | chr1_2:16738154-16738173 | Msa0059560:intron | 30.0% |
| TTTGATCCTTATTATCACGA+TGG | + | chr1_2:16738298-16738317 | Msa0059560:intron | 30.0% | |
| TAGATTAAAACAAAACGGCT+TGG | - | chr1_2:16738366-16738385 | None:intergenic | 30.0% | |
| ATTGTTCGATCTTGATCAAA+CGG | + | chr1_2:16738451-16738470 | Msa0059560:intron | 30.0% | |
| ! | ATGGTTAATGTTGTTTATCC+AGG | + | chr1_2:16738767-16738786 | Msa0059560:intron | 30.0% |
| !!! | TTTATCCAGGTTTTAGTTGT+TGG | + | chr1_2:16738780-16738799 | Msa0059560:intron | 30.0% |
| AATAAAGTGACATACCAACT+GGG | - | chr1_2:16739250-16739269 | None:intergenic | 30.0% | |
| TAATAAAGTGACATACCAAC+TGG | - | chr1_2:16739251-16739270 | None:intergenic | 30.0% | |
| ACATTTAGTGGTTATGTTTG+AGG | + | chr1_2:16739377-16739396 | Msa0059560:intron | 30.0% | |
| TCAAAAGCTACAATATCCTA+AGG | + | chr1_2:16739444-16739463 | Msa0059560:intron | 30.0% | |
| !! | ACTTTCAACATAAAGTGTTG+AGG | - | chr1_2:16739585-16739604 | None:intergenic | 30.0% |
| TATAAGCGAGAATCTTTCTT+TGG | + | chr1_2:16739715-16739734 | Msa0059560:intron | 30.0% | |
| TCTCTTATTACCTCTTTCTT+TGG | + | chr1_2:16739750-16739769 | Msa0059560:intron | 30.0% | |
| !!! | ACCTCTTTCTTTGGTTTTTT+AGG | + | chr1_2:16739759-16739778 | Msa0059560:intron | 30.0% |
| ACCTAAAAAACCAAAGAAAG+AGG | - | chr1_2:16739763-16739782 | None:intergenic | 30.0% | |
| ! | AGCAAATGTTTGTTGACAAA+TGG | - | chr1_2:16739913-16739932 | None:intergenic | 30.0% |
| CAATAATACCTTGGATATGT+TGG | - | chr1_2:16739963-16739982 | None:intergenic | 30.0% | |
| TATTTGTCTTCTTCCTTGTT+TGG | + | chr1_2:16740032-16740051 | Msa0059560:intron | 30.0% | |
| CTTTATCTTATGCTCAAAAG+AGG | + | chr1_2:16740074-16740093 | Msa0059560:CDS | 30.0% | |
| TTATCTTATGCTCAAAAGAG+GGG | + | chr1_2:16740076-16740095 | Msa0059560:CDS | 30.0% | |
| !!! | ACTTTTTCAATAGGGTTGAT+CGG | - | chr1_2:16740123-16740142 | None:intergenic | 30.0% |
| AACCCTATTGAAAAAGTTGA+AGG | + | chr1_2:16740126-16740145 | Msa0059560:CDS | 30.0% | |
| !!! | TGCCTTCAACTTTTTCAATA+GGG | - | chr1_2:16740131-16740150 | None:intergenic | 30.0% |
| !!! | TTGCCTTCAACTTTTTCAAT+AGG | - | chr1_2:16740132-16740151 | None:intergenic | 30.0% |
| AGAACTTAGGTTCTATAACT+TGG | + | chr1_2:16740167-16740186 | Msa0059560:CDS | 30.0% | |
| GTAGAAGCAACAAATATCTT+TGG | - | chr1_2:16740214-16740233 | None:intergenic | 30.0% | |
| ! | TGTTGCTTCTACAAAGTTAA+AGG | + | chr1_2:16740222-16740241 | Msa0059560:intron | 30.0% |
| GTTGCGAATAATCATCATAT+TGG | + | chr1_2:16740440-16740459 | Msa0059560:intron | 30.0% | |
| ! | TTTCGAGTAATAATAGCATG+TGG | + | chr1_2:16740627-16740646 | Msa0059560:intron | 30.0% |
| ! | TTTTTGTGTTGTGTCATGAA+TGG | + | chr1_2:16740653-16740672 | Msa0059560:intron | 30.0% |
| TGGCAAAAGAATAAATGAGT+GGG | - | chr1_2:16740731-16740750 | None:intergenic | 30.0% | |
| TTGGCAAAAGAATAAATGAG+TGG | - | chr1_2:16740732-16740751 | None:intergenic | 30.0% | |
| ! | TGTCTATTGATTGCATTAGA+TGG | + | chr1_2:16740761-16740780 | Msa0059560:intron | 30.0% |
| !! | TTTACCAGCATTTTTGAAGA+GGG | + | chr1_2:16740905-16740924 | Msa0059560:CDS | 30.0% |
| TGGACAATATCTCGGAAAAA+CGG | + | chr1_2:16737011-16737030 | Msa0059560:CDS | 35.0% | |
| ! | TTAGCCTTCAAACAACAAGA+AGG | - | chr1_2:16737100-16737119 | None:intergenic | 35.0% |
| !! | TTCTTGTTGTTTGAAGGCTA+AGG | + | chr1_2:16737099-16737118 | Msa0059560:CDS | 35.0% |
| !! | TGTCATTCTACTGTTGTTTC+TGG | + | chr1_2:16737148-16737167 | Msa0059560:CDS | 35.0% |
| !! | ATTCTACTGTTGTTTCTGGA+TGG | + | chr1_2:16737152-16737171 | Msa0059560:CDS | 35.0% |
| TCACAATCTCAATCTTCCAA+TGG | + | chr1_2:16737178-16737197 | Msa0059560:CDS | 35.0% | |
| ATTTCTTAAGTGAGTGACCA+TGG | + | chr1_2:16737411-16737430 | Msa0059560:intron | 35.0% | |
| ! | ATGGTCGAGATTTTAAGCTT+GGG | + | chr1_2:16737535-16737554 | Msa0059560:intron | 35.0% |
| TCGAAAAATCAATGCACATG+TGG | - | chr1_2:16737583-16737602 | None:intergenic | 35.0% | |
| CTAATCTTGATCAAATGGTC+GGG | + | chr1_2:16737607-16737626 | Msa0059560:intron | 35.0% | |
| TGTTTAGTATCACAGTGAGT+TGG | + | chr1_2:16737745-16737764 | Msa0059560:intron | 35.0% | |
| !! | AGTGTAGCTTTTGAGAAATC+AGG | + | chr1_2:16737796-16737815 | Msa0059560:intron | 35.0% |
| ATCAGATTTCCAAGAGATCT+TGG | + | chr1_2:16738049-16738068 | Msa0059560:CDS | 35.0% | |
| GACTGCAAAACCAAAACAAT+TGG | - | chr1_2:16738144-16738163 | None:intergenic | 35.0% | |
| !! | GTTTTGCAGTCATTAACTTG+TGG | + | chr1_2:16738153-16738172 | Msa0059560:intron | 35.0% |
| TATTGTTCAGTTGACTGAGA+AGG | + | chr1_2:16738197-16738216 | Msa0059560:CDS | 35.0% | |
| AATTGAACAAAGTGGGAGAT+GGG | - | chr1_2:16738250-16738269 | None:intergenic | 35.0% | |
| CTAACTCCATCGTGATAATA+AGG | - | chr1_2:16738307-16738326 | None:intergenic | 35.0% | |
| CTTATTATCACGATGGAGTT+AGG | + | chr1_2:16738305-16738324 | Msa0059560:intron | 35.0% | |
| ! | TATTTTCCAGAGTTAGCTGT+TGG | + | chr1_2:16738995-16739014 | Msa0059560:CDS | 35.0% |
| ATAGCATCATACTTTCCTTC+AGG | - | chr1_2:16739209-16739228 | None:intergenic | 35.0% | |
| TCCTAAGGTGATACATTTAG+TGG | + | chr1_2:16739365-16739384 | Msa0059560:intron | 35.0% | |
| ACCACTAAATGTATCACCTT+AGG | - | chr1_2:16739369-16739388 | None:intergenic | 35.0% | |
| ! | TTAGCACAAATGAAAGTACG+AGG | - | chr1_2:16739473-16739492 | None:intergenic | 35.0% |
| !! | ATAAAGTGTTGAGGCTACAT+AGG | - | chr1_2:16739576-16739595 | None:intergenic | 35.0% |
| !! | TTATCAAAGGCATTAAGACC+TGG | + | chr1_2:16739822-16739841 | Msa0059560:CDS | 35.0% |
| GAGTCTGAACAATAATACCT+TGG | - | chr1_2:16739972-16739991 | None:intergenic | 35.0% | |
| ATCGGGTTTACAAAATCAAC+TGG | - | chr1_2:16740105-16740124 | None:intergenic | 35.0% | |
| !!! | CTTTTTCAATAGGGTTGATC+GGG | - | chr1_2:16740122-16740141 | None:intergenic | 35.0% |
| CTAAGCACATAAGAGAACTT+AGG | + | chr1_2:16740154-16740173 | Msa0059560:CDS | 35.0% | |
| ACTTAGGTTCTATAACTTGG+AGG | + | chr1_2:16740170-16740189 | Msa0059560:CDS | 35.0% | |
| ! | TACAAAGTTAAAGGCGTGTT+TGG | + | chr1_2:16740231-16740250 | Msa0059560:intron | 35.0% |
| TGTAATCACAAGTGTCCTAT+CGG | - | chr1_2:16740276-16740295 | None:intergenic | 35.0% | |
| GCGAATAATCATCATATTGG+TGG | + | chr1_2:16740443-16740462 | Msa0059560:intron | 35.0% | |
| !! | CTTTACCAGCATTTTTGAAG+AGG | + | chr1_2:16740904-16740923 | Msa0059560:CDS | 35.0% |
| GCAAGAATGATGATCACCAT+TGG | - | chr1_2:16737197-16737216 | None:intergenic | 40.0% | |
| GTTATGCAATTGGACAAACC+TGG | - | chr1_2:16737378-16737397 | None:intergenic | 40.0% | |
| TCTACAACAACTCAATGCCA+TGG | - | chr1_2:16737431-16737450 | None:intergenic | 40.0% | |
| GTCACATCTAGACAGTTTGA+TGG | + | chr1_2:16737502-16737521 | Msa0059560:intron | 40.0% | |
| ! | GACAGTTTGATGGTCATGAT+TGG | + | chr1_2:16737512-16737531 | Msa0059560:intron | 40.0% |
| ! | GTTTGATGGTCATGATTGGA+TGG | + | chr1_2:16737516-16737535 | Msa0059560:intron | 40.0% |
| ! | GATGGTCGAGATTTTAAGCT+TGG | + | chr1_2:16737534-16737553 | Msa0059560:intron | 40.0% |
| ! | TGGTCGAGATTTTAAGCTTG+GGG | + | chr1_2:16737536-16737555 | Msa0059560:intron | 40.0% |
| ! | ATGAATGTCTGGAGTCACAT+TGG | + | chr1_2:16737630-16737649 | Msa0059560:intron | 40.0% |
| !! | GTAGCTTTTGAGAAATCAGG+TGG | + | chr1_2:16737799-16737818 | Msa0059560:intron | 40.0% |
| ATTTGATGTCACGGTGAGTT+AGG | - | chr1_2:16737840-16737859 | None:intergenic | 40.0% | |
| CCTCAAAAACCAAGATCTCT+TGG | - | chr1_2:16738061-16738080 | None:intergenic | 40.0% | |
| !! | CCAAGAGATCTTGGTTTTTG+AGG | + | chr1_2:16738058-16738077 | Msa0059560:CDS | 40.0% |
| GAATTGAACAAAGTGGGAGA+TGG | - | chr1_2:16738251-16738270 | None:intergenic | 40.0% | |
| GGGACTGAATTGAACAAAGT+GGG | - | chr1_2:16738257-16738276 | None:intergenic | 40.0% | |
| ! | AGTTAGGTTTTCTGTAGCCA+TGG | + | chr1_2:16738321-16738340 | Msa0059560:intron | 40.0% |
| GTGCTAAATGTGTGACTGTA+TGG | + | chr1_2:16738482-16738501 | Msa0059560:intron | 40.0% | |
| ATACGAGTTCAAATTCCCTC+AGG | + | chr1_2:16738644-16738663 | Msa0059560:intron | 40.0% | |
| TACGAGTTCAAATTCCCTCA+GGG | + | chr1_2:16738645-16738664 | Msa0059560:intron | 40.0% | |
| ! | TATTTTACGAGTGTCCCTGA+GGG | - | chr1_2:16738662-16738681 | None:intergenic | 40.0% |
| !!! | ATCCAGGTTTTAGTTGTTGG+TGG | + | chr1_2:16738783-16738802 | Msa0059560:intron | 40.0% |
| CAACATGAGTCACTGAACTA+TGG | - | chr1_2:16738842-16738861 | None:intergenic | 40.0% | |
| TCAAATCCAACAGCTAACTC+TGG | - | chr1_2:16739004-16739023 | None:intergenic | 40.0% | |
| TTTCTTAGATGCACTCCTGA+AGG | + | chr1_2:16739191-16739210 | Msa0059560:CDS | 40.0% | |
| ! | TGAAAGTACGAGGAAACCTT+AGG | - | chr1_2:16739463-16739482 | None:intergenic | 40.0% |
| !! | TCTCAGTCATTTTGATCCTC+TGG | - | chr1_2:16739552-16739571 | None:intergenic | 40.0% |
| TGTCTGACACGTTTCAATGT+CGG | + | chr1_2:16739613-16739632 | Msa0059560:intron | 40.0% | |
| ! | GTAACATGGCAGAAAGTATG+TGG | + | chr1_2:16739856-16739875 | Msa0059560:CDS | 40.0% |
| GCTTCATACTCACCTTATTC+AGG | + | chr1_2:16739878-16739897 | Msa0059560:CDS | 40.0% | |
| TGGAGATCATGTCCTGAATA+AGG | - | chr1_2:16739893-16739912 | None:intergenic | 40.0% | |
| TTGCTTCTGTACGTTATGCA+TGG | + | chr1_2:16739928-16739947 | Msa0059560:CDS | 40.0% | |
| CTAGTGTTCCAACATATCCA+AGG | + | chr1_2:16739952-16739971 | Msa0059560:CDS | 40.0% | |
| GGGTTTACAAAATCAACTGG+TGG | - | chr1_2:16740102-16740121 | None:intergenic | 40.0% | |
| ! | ATCATCATATTGGTGGCCAT+TGG | + | chr1_2:16740450-16740469 | Msa0059560:intron | 40.0% |
| ATCTCGGAAAAACGGTGTAG+CGG | + | chr1_2:16737019-16737038 | Msa0059560:CDS | 45.0% | |
| GTTTCAGTCCCTGAACTTGA+GGG | + | chr1_2:16737121-16737140 | Msa0059560:CDS | 45.0% | |
| GACACTTTCCCTCAAGTTCA+GGG | - | chr1_2:16737132-16737151 | None:intergenic | 45.0% | |
| TGACACTTTCCCTCAAGTTC+AGG | - | chr1_2:16737133-16737152 | None:intergenic | 45.0% | |
| TTCAACAATCCAATGTGGCC+AGG | + | chr1_2:16737357-16737376 | Msa0059560:intron | 45.0% | |
| AAATGGTCGGGATGAATGTC+TGG | + | chr1_2:16737619-16737638 | Msa0059560:intron | 45.0% | |
| !! | GGGAAAGTGCTTGTACTTGA+TGG | + | chr1_2:16738174-16738193 | Msa0059560:CDS | 45.0% |
| GGGGACTGAATTGAACAAAG+TGG | - | chr1_2:16738258-16738277 | None:intergenic | 45.0% | |
| CGCTTGACAACAGATATCCA+TGG | - | chr1_2:16738341-16738360 | None:intergenic | 45.0% | |
| GAGGTGTAGACGTAGTTTAG+TGG | + | chr1_2:16738594-16738613 | Msa0059560:intron | 45.0% | |
| ! | CTATTTTACGAGTGTCCCTG+AGG | - | chr1_2:16738663-16738682 | None:intergenic | 45.0% |
| CACCACCAACAACTAAAACC+TGG | - | chr1_2:16738788-16738807 | None:intergenic | 45.0% | |
| !!! | CAGGTTTTAGTTGTTGGTGG+TGG | + | chr1_2:16738786-16738805 | Msa0059560:intron | 45.0% |
| !! | TTAGTTGTTGGTGGTGGAGA+TGG | + | chr1_2:16738792-16738811 | Msa0059560:CDS | 45.0% |
| !! | TGGAGATGGTGGAGTTCTAA+GGG | + | chr1_2:16738806-16738825 | Msa0059560:CDS | 45.0% |
| CATGAGTCACTGAACTATGG+CGG | - | chr1_2:16738839-16738858 | None:intergenic | 45.0% | |
| CCAACATGCAGATACACTCT+AGG | - | chr1_2:16739031-16739050 | None:intergenic | 45.0% | |
| CCTAGAGTGTATCTGCATGT+TGG | + | chr1_2:16739028-16739047 | Msa0059560:CDS | 45.0% | |
| ! | GTGTATCTGCATGTTGGTGA+TGG | + | chr1_2:16739034-16739053 | Msa0059560:CDS | 45.0% |
| !!! | TGGTTTTTTAGGTCCTGCTC+AGG | + | chr1_2:16739770-16739789 | Msa0059560:intron | 45.0% |
| TTCTCTACAAGTTCCTGAGC+AGG | - | chr1_2:16739786-16739805 | None:intergenic | 45.0% | |
| !! | TCAAAGGCATTAAGACCTGG+TGG | + | chr1_2:16739825-16739844 | Msa0059560:CDS | 45.0% |
| ATGTTACATAGCACTCCACC+AGG | - | chr1_2:16739843-16739862 | None:intergenic | 45.0% | |
| ! | TGGTGGAGTGCTATGTAACA+TGG | + | chr1_2:16739842-16739861 | Msa0059560:CDS | 45.0% |
| !! | ACCAGCATTTTTGAAGAGGG+AGG | + | chr1_2:16740908-16740927 | Msa0059560:CDS | 45.0% |
| ACCTCCCTCTTCAAAAATGC+TGG | - | chr1_2:16740912-16740931 | None:intergenic | 45.0% | |
| !!! | TATATATTTTTCTAAAAATT+TGG | + | chr1_2:16737871-16737890 | Msa0059560:intron | 5.0% |
| !! | AAAACGGTGTAGCGGACTTG+AGG | + | chr1_2:16737027-16737046 | Msa0059560:CDS | 50.0% |
| GGTTTCAGTCCCTGAACTTG+AGG | + | chr1_2:16737120-16737139 | Msa0059560:CDS | 50.0% | |
| TTGGACAAACCTGGCCACAT+TGG | - | chr1_2:16737369-16737388 | None:intergenic | 50.0% | |
| !! | GGAGATGGGCTATCATCTCT+TGG | - | chr1_2:16738236-16738255 | None:intergenic | 50.0% |
| !! | GTGGAGATGGTGGAGTTCTA+AGG | + | chr1_2:16738805-16738824 | Msa0059560:CDS | 50.0% |
| ! | GTTGATTCCTCTGACCCAGT+TGG | + | chr1_2:16739233-16739252 | Msa0059560:CDS | 50.0% |
| TGACATACCAACTGGGTCAG+AGG | - | chr1_2:16739243-16739262 | None:intergenic | 50.0% | |
| ! | CTTCCTTGTTTGGCATGCAG+TGG | + | chr1_2:16740042-16740061 | Msa0059560:intron | 50.0% |
| ACACCACTGCATGCCAAACA+AGG | - | chr1_2:16740048-16740067 | None:intergenic | 50.0% | |
| TTGGCATGCAGTGGTGTGAT+AGG | + | chr1_2:16740051-16740070 | Msa0059560:intron | 50.0% | |
| TGGTGGCCATTGGATCAAGA+TGG | + | chr1_2:16740460-16740479 | Msa0059560:intron | 50.0% | |
| GGTGGCCATTGGATCAAGAT+GGG | + | chr1_2:16740461-16740480 | Msa0059560:intron | 50.0% | |
| GCCATTGGATCAAGATGGGA+CGG | + | chr1_2:16740465-16740484 | Msa0059560:intron | 50.0% | |
| ACCGTCCCATCTTGATCCAA+TGG | - | chr1_2:16740469-16740488 | None:intergenic | 50.0% | |
| ACCCTGCATTCACACAGCTA+GGG | - | chr1_2:16740585-16740604 | None:intergenic | 50.0% | |
| TACCCTGCATTCACACAGCT+AGG | - | chr1_2:16740586-16740605 | None:intergenic | 50.0% | |
| !! | GTTGTTGGTGGTGGAGATGG+TGG | + | chr1_2:16738795-16738814 | Msa0059560:CDS | 55.0% |
| TGACACGTGTCGTGTCCGAT+AGG | + | chr1_2:16740258-16740277 | Msa0059560:intron | 55.0% | |
| CGACGTGTCAGTGTCATGTC+AGG | + | chr1_2:16740332-16740351 | Msa0059560:intron | 55.0% | |
| TGCCCTAGCTGTGTGAATGC+AGG | + | chr1_2:16740580-16740599 | Msa0059560:intron | 55.0% | |
| GCCCTAGCTGTGTGAATGCA+GGG | + | chr1_2:16740581-16740600 | Msa0059560:intron | 55.0% | |
| !! | CGGTGTAGCGGACTTGAGGT+CGG | + | chr1_2:16737031-16737050 | Msa0059560:CDS | 60.0% |
| ! | AGCGGACTTGAGGTCGGAAC+AGG | + | chr1_2:16737037-16737056 | Msa0059560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16737010 | 16740980 | 16737010 | ID=Msa0059560;Name=Msa0059560 |
| chr1_2 | mRNA | 16737010 | 16740980 | 16737010 | ID=Msa0059560-mRNA-1;Parent=Msa0059560;Name=Msa0059560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|9|0|352 |
| chr1_2 | exon | 16737010 | 16737199 | 16737010 | ID=Msa0059560-mRNA-1:exon:6590;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16738003 | 16738079 | 16738003 | ID=Msa0059560-mRNA-1:exon:6591;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16738162 | 16738284 | 16738162 | ID=Msa0059560-mRNA-1:exon:6592;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16738789 | 16738893 | 16738789 | ID=Msa0059560-mRNA-1:exon:6593;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16738983 | 16739055 | 16738983 | ID=Msa0059560-mRNA-1:exon:6594;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16739183 | 16739254 | 16739183 | ID=Msa0059560-mRNA-1:exon:6595;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16739781 | 16739973 | 16739781 | ID=Msa0059560-mRNA-1:exon:6596;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16740062 | 16740191 | 16740062 | ID=Msa0059560-mRNA-1:exon:6597;Parent=Msa0059560-mRNA-1 |
| chr1_2 | exon | 16740885 | 16740980 | 16740885 | ID=Msa0059560-mRNA-1:exon:6598;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16737010 | 16737199 | 16737010 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16738003 | 16738079 | 16738003 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16738162 | 16738284 | 16738162 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16738789 | 16738893 | 16738789 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16738983 | 16739055 | 16738983 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16739183 | 16739254 | 16739183 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16739781 | 16739973 | 16739781 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16740062 | 16740191 | 16740062 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| chr1_2 | CDS | 16740885 | 16740980 | 16740885 | ID=Msa0059560-mRNA-1:cds;Parent=Msa0059560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
