Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139230 | sp|Q94BN2|SPSY_ARATH | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.22e-171 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139230 | A0A072VG69 | 88.649 | 370 | 30 | 1 | 1 | 358 | 1 | 370 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009840 | Msa0139230 | 0.814958 | 1.181471e-51 | -8.615850e-47 |
| Msa0059560 | Msa0139230 | 0.802166 | 6.382793e-49 | -8.615850e-47 |
| Msa0139230 | Msa0259110 | 0.813826 | 2.103056e-51 | -8.615850e-47 |
| Msa0139230 | Msa0671490 | 0.800913 | 1.153262e-48 | -8.615850e-47 |
| Msa0139230 | Msa1026050 | 0.836235 | 1.054166e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139230 | MtrunA17_Chr1g0158851 | 88.649 | 370 | 30 | 1 | 1 | 358 | 1 | 370 | 0.0 | 634 |
| Msa0139230 | MtrunA17_Chr3g0126551 | 76.218 | 349 | 65 | 3 | 17 | 349 | 11 | 357 | 3.10e-179 | 501 |
| Msa0139230 | MtrunA17_Chr5g0413701 | 64.353 | 317 | 105 | 6 | 34 | 346 | 27 | 339 | 1.08e-148 | 423 |
| Msa0139230 | MtrunA17_Chr8g0365071 | 63.333 | 300 | 107 | 3 | 48 | 345 | 39 | 337 | 2.67e-143 | 409 |
| Msa0139230 | MtrunA17_Chr3g0117881 | 58.703 | 293 | 112 | 5 | 58 | 343 | 39 | 329 | 1.43e-115 | 339 |
| Msa0139230 | MtrunA17_Chr5g0394371 | 32.174 | 230 | 147 | 6 | 79 | 303 | 42 | 267 | 6.84e-32 | 122 |
| Msa0139230 | MtrunA17_Chr1g0150851 | 30.189 | 265 | 176 | 7 | 76 | 333 | 56 | 318 | 5.31e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139230 | AT5G53120.1 | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.34e-172 | 483 |
| Msa0139230 | AT5G53120.4 | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.34e-172 | 483 |
| Msa0139230 | AT5G53120.2 | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.34e-172 | 483 |
| Msa0139230 | AT5G53120.5 | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.34e-172 | 483 |
| Msa0139230 | AT5G53120.3 | 72.126 | 348 | 79 | 2 | 17 | 348 | 11 | 356 | 7.34e-172 | 483 |
| Msa0139230 | AT5G53120.7 | 72.126 | 348 | 79 | 2 | 17 | 348 | 28 | 373 | 2.59e-171 | 482 |
| Msa0139230 | AT5G53120.6 | 64.800 | 375 | 87 | 4 | 17 | 348 | 11 | 383 | 3.16e-167 | 472 |
| Msa0139230 | AT1G23820.1 | 62.215 | 307 | 112 | 3 | 39 | 343 | 23 | 327 | 3.65e-144 | 411 |
| Msa0139230 | AT1G70310.1 | 64.626 | 294 | 102 | 2 | 52 | 343 | 40 | 333 | 8.25e-142 | 406 |
| Msa0139230 | AT1G23820.2 | 63.052 | 249 | 90 | 2 | 39 | 285 | 67 | 315 | 6.88e-117 | 342 |
| Msa0139230 | AT5G19530.2 | 29.778 | 225 | 151 | 5 | 76 | 295 | 40 | 262 | 7.82e-31 | 120 |
| Msa0139230 | AT5G19530.1 | 29.778 | 225 | 151 | 5 | 76 | 295 | 47 | 269 | 1.10e-30 | 119 |
Find 65 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATTCTCCTGTTCTTTC+TGG | 0.070555 | 1_3:+72811043 | Msa0139230:CDS |
| ATCAGACTTTCAAGAAGTTT+TGG | 0.257018 | 1_3:+72811750 | Msa0139230:CDS |
| TATTTGTGAGATAGATAAAA+TGG | 0.298775 | 1_3:+72812518 | Msa0139230:CDS |
| GGAGATGAGTTATCATTTCT+TGG | 0.301977 | 1_3:-72811934 | None:intergenic |
| GCTTCATACTCACCTTATTC+AGG | 0.325838 | 1_3:+72813510 | Msa0139230:CDS |
| ATCAGAGGAATCAACAATTA+TGG | 0.349717 | 1_3:-72812881 | None:intergenic |
| AGATATTGTCCACAATATTC+TGG | 0.349802 | 1_3:-72810895 | None:intergenic |
| TGGAGATCATGTCCTGAATA+AGG | 0.362663 | 1_3:-72813522 | None:intergenic |
| TTAGTTGTTGGTGGTGGAGA+TGG | 0.363986 | 1_3:+72812447 | Msa0139230:CDS |
| AGCAAATGTTTGTTGACAAA+TGG | 0.374139 | 1_3:-72813542 | None:intergenic |
| AATTCCTTCTTGTTGTTTGA+AGG | 0.410076 | 1_3:+72810988 | Msa0139230:CDS |
| CAATAATACCTTGGATATGT+TGG | 0.427530 | 1_3:-72813592 | None:intergenic |
| ATTCTCCTGTTCTTTCTGGA+TGG | 0.431128 | 1_3:+72811047 | Msa0139230:CDS |
| TGGTGGAGTGCTATGTAATA+TGG | 0.433597 | 1_3:+72813474 | Msa0139230:CDS |
| GGAAAAGTGCTTGTACTTGA+TGG | 0.434422 | 1_3:+72811875 | Msa0139230:CDS |
| ATCGGGTTTACAAAATCAAC+TGG | 0.444824 | 1_3:-72813734 | None:intergenic |
| TTCTTGTTGTTTGAAGGCTA+AGG | 0.458947 | 1_3:+72810994 | Msa0139230:CDS |
| TTGGCAAGCAGTGGTGTGAT+AGG | 0.465537 | 1_3:+72813683 | Msa0139230:intron |
| TGGTGGTTTAGGTCCTGCTC+AGG | 0.476181 | 1_3:+72813402 | Msa0139230:intron |
| GTTGTTGGTGGTGGAGATGG+TGG | 0.478081 | 1_3:+72812450 | Msa0139230:CDS |
| AGCGGACTTGAGGTTGGAAC+AGG | 0.480755 | 1_3:+72810932 | Msa0139230:CDS |
| TTTCTTAGATGCACTTCTGA+AGG | 0.496400 | 1_3:+72812847 | Msa0139230:CDS |
| GTGGAGATGGTGGAGTTCTG+AGG | 0.507240 | 1_3:+72812460 | Msa0139230:CDS |
| CTTTATCTTATGCTCAAAAG+AGG | 0.509069 | 1_3:+72813706 | Msa0139230:CDS |
| TCAAATCCAACAGCTAACTC+TGG | 0.513813 | 1_3:-72812657 | None:intergenic |
| TTGTCCACAATATTCTGGCT+AGG | 0.514066 | 1_3:-72810890 | None:intergenic |
| GAGAACCATCCAGAAAGAAC+AGG | 0.514991 | 1_3:-72811052 | None:intergenic |
| TTTATCTTATGCTCAAAAGA+GGG | 0.518661 | 1_3:+72813707 | Msa0139230:CDS |
| TTGCTTCTGTACGTTATGCA+TGG | 0.518868 | 1_3:+72813560 | Msa0139230:CDS |
| CTAAGCACATAAGAGAACTT+AGG | 0.523416 | 1_3:+72813786 | Msa0139230:CDS |
| CCAACATGCAGGTGTACTCT+AGG | 0.528257 | 1_3:-72812684 | None:intergenic |
| TCACAATCTCAATCTTCTTG+TGG | 0.528268 | 1_3:+72811073 | Msa0139230:CDS |
| TTCTCCACGAGTTCCTGAGC+AGG | 0.531132 | 1_3:-72813415 | None:intergenic |
| GAATATTGTGGACAATATCT+CGG | 0.535195 | 1_3:+72810898 | Msa0139230:CDS |
| ATCCAGAAAGAACAGGAGAA+TGG | 0.543982 | 1_3:-72811045 | None:intergenic |
| TGGAGATGGTGGAGTTCTGA+GGG | 0.545205 | 1_3:+72812461 | Msa0139230:CDS |
| TGTCCACAATATTCTGGCTA+GGG | 0.551199 | 1_3:-72810889 | None:intergenic |
| AAAACGGTGTAGCGGACTTG+AGG | 0.555308 | 1_3:+72810922 | Msa0139230:CDS |
| GTAATATGGCAGAAAGTATG+TGG | 0.561543 | 1_3:+72813488 | Msa0139230:CDS |
| GTTGATTCCTCTGATCCAGT+TGG | 0.564389 | 1_3:+72812889 | Msa0139230:CDS |
| ATGCCCTAGCCAGAATATTG+TGG | 0.587624 | 1_3:+72810886 | Msa0139230:CDS |
| GGTTTCAGACCCTGAACCTG+AGG | 0.592373 | 1_3:+72811015 | Msa0139230:CDS |
| CGGTGTAGCGGACTTGAGGT+TGG | 0.599576 | 1_3:+72810926 | Msa0139230:CDS |
| AGATACCATCACCAACATGC+AGG | 0.601847 | 1_3:-72812695 | None:intergenic |
| TGACATACCAACTGGATCAG+AGG | 0.601887 | 1_3:-72812896 | None:intergenic |
| AGAACTTAGGTTCTATAACT+CGG | 0.610249 | 1_3:+72813799 | Msa0139230:CDS |
| GGGACTGAATTGAACAAAGT+GGG | 0.612644 | 1_3:-72811955 | None:intergenic |
| AGGTCCTGCTCAGGAACTCG+TGG | 0.619523 | 1_3:+72813411 | Msa0139230:intron |
| GTTTCAGACCCTGAACCTGA+GGG | 0.622926 | 1_3:+72811016 | Msa0139230:CDS |
| CATGAAGTACAGAACGGTGG+CGG | 0.626718 | 1_3:-72812491 | None:intergenic |
| GGGGACTGAATTGAACAAAG+TGG | 0.629263 | 1_3:-72811956 | None:intergenic |
| TTAGCCTTCAAACAACAAGA+AGG | 0.633703 | 1_3:-72810992 | None:intergenic |
| TTATCTTATGCTCAAAAGAG+GGG | 0.634919 | 1_3:+72813708 | Msa0139230:CDS |
| AATTGTTCAGTTGACTGAGA+AGG | 0.638902 | 1_3:+72811898 | Msa0139230:CDS |
| CCTAGAGTACACCTGCATGT+TGG | 0.640270 | 1_3:+72812684 | Msa0139230:CDS |
| TCAAAGGCATTAAGACCTGG+TGG | 0.642147 | 1_3:+72813457 | Msa0139230:CDS |
| ATATTACATAGCACTCCACC+AGG | 0.645573 | 1_3:-72813472 | None:intergenic |
| GAATTGTGTAGATATAGAGA+AGG | 0.649083 | 1_3:+72810964 | Msa0139230:CDS |
| CTAGTGTTCCAACATATCCA+AGG | 0.650334 | 1_3:+72813584 | Msa0139230:CDS |
| GTACACCTGCATGTTGGTGA+TGG | 0.658823 | 1_3:+72812690 | Msa0139230:CDS |
| TTATCAAAGGCATTAAGACC+TGG | 0.670906 | 1_3:+72813454 | Msa0139230:CDS |
| GGGTTTACAAAATCAACTGG+TGG | 0.688551 | 1_3:-72813731 | None:intergenic |
| TATCAACATGAAGTACAGAA+CGG | 0.696592 | 1_3:-72812497 | None:intergenic |
| ACTTAGGTTCTATAACTCGG+AGG | 0.698666 | 1_3:+72813802 | Msa0139230:CDS |
| CAACATGAAGTACAGAACGG+TGG | 0.743320 | 1_3:-72812494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATCAACTATA+TGG | - | chr1_3:72812580-72812599 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTGCATTCT+TGG | + | chr1_3:72811118-72811137 | Msa0139230:intron | 15.0% |
| !!! | TTTTCAGTATTTTTTTAAAC+AGG | + | chr1_3:72811210-72811229 | Msa0139230:intron | 15.0% |
| !!! | TTTTTCTAACTACTAAAATT+TGG | + | chr1_3:72811577-72811596 | Msa0139230:intron | 15.0% |
| !!! | AAAAATAACATAACTGTTTT+GGG | - | chr1_3:72811980-72811999 | None:intergenic | 15.0% |
| !! | TTAAAAACTATAATATCATG+AGG | + | chr1_3:72813105-72813124 | Msa0139230:intron | 15.0% |
| !!! | AAAGTAAATTTTATCTAGAA+AGG | - | chr1_3:72814430-72814449 | None:intergenic | 15.0% |
| !! | ACAAGTATATATTATGCAAT+TGG | - | chr1_3:72811277-72811296 | None:intergenic | 20.0% |
| !! | CAAACATATAGTATAGATTT+GGG | - | chr1_3:72811371-72811390 | None:intergenic | 20.0% |
| !! | ACAAACATATAGTATAGATT+TGG | - | chr1_3:72811372-72811391 | None:intergenic | 20.0% |
| !!! | TTGATTAACACCAATTATTT+TGG | + | chr1_3:72811832-72811851 | Msa0139230:intron | 20.0% |
| !!! | AAAATAACATAACTGTTTTG+GGG | - | chr1_3:72811979-72811998 | None:intergenic | 20.0% |
| !!! | CAAAAATAACATAACTGTTT+TGG | - | chr1_3:72811981-72812000 | None:intergenic | 20.0% |
| !!! | GATTTTCTAATATCAAGATA+CGG | + | chr1_3:72812275-72812294 | Msa0139230:intron | 20.0% |
| !!! | TGTTTTATACATATGCTAAA+TGG | + | chr1_3:72812401-72812420 | Msa0139230:intron | 20.0% |
| !! | TATTTGTGAGATAGATAAAA+TGG | + | chr1_3:72812518-72812537 | Msa0139230:CDS | 20.0% |
| !! | TTATTTACTGTGAAATATGT+TGG | + | chr1_3:72812978-72812997 | Msa0139230:intron | 20.0% |
| !! | CAAAGAAATATTATATCCTA+AGG | + | chr1_3:72813006-72813025 | Msa0139230:intron | 20.0% |
| !!! | TTGATTTTTTTAAAAACCAG+AGG | + | chr1_3:72813193-72813212 | Msa0139230:intron | 20.0% |
| !!! | GAAAATAGAATAATTTGCTT+TGG | - | chr1_3:72813297-72813316 | None:intergenic | 20.0% |
| !!! | TTTGATAATGTCACAAAAAA+TGG | - | chr1_3:72813442-72813461 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGACATTATCAA+AGG | + | chr1_3:72813441-72813460 | Msa0139230:CDS | 20.0% |
| !! | ATCATTAATAAAGGATATGT+TGG | - | chr1_3:72813637-72813656 | None:intergenic | 20.0% |
| !! | TAAGATGCAATCATTAATAA+AGG | - | chr1_3:72813646-72813665 | None:intergenic | 20.0% |
| !! | GTATTTGAAAATCCAAAATA+GGG | - | chr1_3:72814133-72814152 | None:intergenic | 20.0% |
| !! | TGTATTTGAAAATCCAAAAT+AGG | - | chr1_3:72814134-72814153 | None:intergenic | 20.0% |
| ! | AAACACATTAACATAAGTGA+AGG | - | chr1_3:72811158-72811177 | None:intergenic | 25.0% |
| !! | TGTGTTTACGATAATTTTCT+TGG | + | chr1_3:72811171-72811190 | Msa0139230:intron | 25.0% |
| ! | TTTATTTCAACAATCCAATG+TGG | + | chr1_3:72811241-72811260 | Msa0139230:intron | 25.0% |
| !!! | TGGTTTTGATTTCTATCATT+AGG | + | chr1_3:72811682-72811701 | Msa0139230:intron | 25.0% |
| ! | AGTAGAAAAAATATTGTACG+AGG | + | chr1_3:72811723-72811742 | Msa0139230:CDS | 25.0% |
| ! | GACTGTAAAACCAAAATAAT+TGG | - | chr1_3:72811845-72811864 | None:intergenic | 25.0% |
| !! | GTTTTACAGTCATTAACATA+TGG | + | chr1_3:72811854-72811873 | Msa0139230:intron | 25.0% |
| !!! | AAATAACATAACTGTTTTGG+GGG | - | chr1_3:72811978-72811997 | None:intergenic | 25.0% |
| ! | CACGAATAATAAAATCTGAT+TGG | - | chr1_3:72812230-72812249 | None:intergenic | 25.0% |
| !! | ATCAGATTTTATTATTCGTG+AGG | + | chr1_3:72812230-72812249 | Msa0139230:intron | 25.0% |
| ! | TAATAAAATGACATACCAAC+TGG | - | chr1_3:72812907-72812926 | None:intergenic | 25.0% |
| ! | TATCAACAAAAAGATACAAG+AGG | - | chr1_3:72812942-72812961 | None:intergenic | 25.0% |
| ! | AACTAAATGTATATCACCTT+AGG | - | chr1_3:72813025-72813044 | None:intergenic | 25.0% |
| !!! | CATTTAGTTTGTTATGTTTG+AGG | + | chr1_3:72813036-72813055 | Msa0139230:intron | 25.0% |
| !!! | GTTTCTTCATACTCATTTTT+GGG | + | chr1_3:72813127-72813146 | Msa0139230:intron | 25.0% |
| ! | TCTCTTATTATCTCTTTCTT+TGG | + | chr1_3:72813382-72813401 | Msa0139230:intron | 25.0% |
| !!! | TATTTGTTTTCTTCCTTGTT+TGG | + | chr1_3:72813664-72813683 | Msa0139230:intron | 25.0% |
| ! | TTTATCTTATGCTCAAAAGA+GGG | + | chr1_3:72813707-72813726 | Msa0139230:CDS | 25.0% |
| ! | TAGAAGCAACAAATATCTTT+GGG | - | chr1_3:72813845-72813864 | None:intergenic | 25.0% |
| !!! | AGATTCTAAAATCCCTATTT+TGG | + | chr1_3:72814118-72814137 | Msa0139230:intron | 25.0% |
| ! | ATGCTATTATTACTCGAAAA+TGG | - | chr1_3:72814249-72814268 | None:intergenic | 25.0% |
| ! | ACAATACAAGAAAGAAAAAC+AGG | - | chr1_3:72814330-72814349 | None:intergenic | 25.0% |
| ! | TCAATAGACAGAATAAAACT+TGG | - | chr1_3:72814374-72814393 | None:intergenic | 25.0% |
| AGATATTGTCCACAATATTC+TGG | - | chr1_3:72810898-72810917 | None:intergenic | 30.0% | |
| GAATATTGTGGACAATATCT+CGG | + | chr1_3:72810898-72810917 | Msa0139230:CDS | 30.0% | |
| GAATTGTGTAGATATAGAGA+AGG | + | chr1_3:72810964-72810983 | Msa0139230:CDS | 30.0% | |
| !! | AATTCCTTCTTGTTGTTTGA+AGG | + | chr1_3:72810988-72811007 | Msa0139230:CDS | 30.0% |
| TATTTGTATGAGTGCATGTT+TGG | + | chr1_3:72811436-72811455 | Msa0139230:intron | 30.0% | |
| !!! | TTGTGTACTGTTAGTTTTGA+TGG | + | chr1_3:72811662-72811681 | Msa0139230:intron | 30.0% |
| ! | ATCAGACTTTCAAGAAGTTT+TGG | + | chr1_3:72811750-72811769 | Msa0139230:CDS | 30.0% |
| !!! | TCAAGAAGTTTTGGTTTTTG+AGG | + | chr1_3:72811759-72811778 | Msa0139230:CDS | 30.0% |
| !! | GGTTTTAATGTTGTTAATCC+AGG | + | chr1_3:72812422-72812441 | Msa0139230:intron | 30.0% |
| !!! | TTAATCCAGGTTTTAGTTGT+TGG | + | chr1_3:72812435-72812454 | Msa0139230:intron | 30.0% |
| TATCAACATGAAGTACAGAA+CGG | - | chr1_3:72812500-72812519 | None:intergenic | 30.0% | |
| CAATTGATCATTCATTCACT+AGG | + | chr1_3:72812617-72812636 | Msa0139230:intron | 30.0% | |
| ATCAGAGGAATCAACAATTA+TGG | - | chr1_3:72812884-72812903 | None:intergenic | 30.0% | |
| ! | GGTTTCTTCATACTCATTTT+TGG | + | chr1_3:72813126-72813145 | Msa0139230:intron | 30.0% |
| TAAAAACCAGAGGATCAAAA+TGG | + | chr1_3:72813203-72813222 | Msa0139230:intron | 30.0% | |
| ACAATTTCAATGCAAAGTGT+TGG | - | chr1_3:72813246-72813265 | None:intergenic | 30.0% | |
| CTTTGCATTGAAATTGTCTT+TGG | + | chr1_3:72813249-72813268 | Msa0139230:intron | 30.0% | |
| CTTATTATCTCTTTCTTTGG+TGG | + | chr1_3:72813385-72813404 | Msa0139230:intron | 30.0% | |
| ! | AGCAAATGTTTGTTGACAAA+TGG | - | chr1_3:72813545-72813564 | None:intergenic | 30.0% |
| CAATAATACCTTGGATATGT+TGG | - | chr1_3:72813595-72813614 | None:intergenic | 30.0% | |
| CTTTATCTTATGCTCAAAAG+AGG | + | chr1_3:72813706-72813725 | Msa0139230:CDS | 30.0% | |
| TTATCTTATGCTCAAAAGAG+GGG | + | chr1_3:72813708-72813727 | Msa0139230:CDS | 30.0% | |
| !!! | ACTTTTTCAATAGGGTTGAT+CGG | - | chr1_3:72813755-72813774 | None:intergenic | 30.0% |
| AACCCTATTGAAAAAGTTGA+AGG | + | chr1_3:72813758-72813777 | Msa0139230:CDS | 30.0% | |
| !!! | TGCCTTCAACTTTTTCAATA+GGG | - | chr1_3:72813763-72813782 | None:intergenic | 30.0% |
| !!! | TTGCCTTCAACTTTTTCAAT+AGG | - | chr1_3:72813764-72813783 | None:intergenic | 30.0% |
| AGAACTTAGGTTCTATAACT+CGG | + | chr1_3:72813799-72813818 | Msa0139230:CDS | 30.0% | |
| GTAGAAGCAACAAATATCTT+TGG | - | chr1_3:72813846-72813865 | None:intergenic | 30.0% | |
| ! | TGTTGCTTCTACAAAGTTAA+AGG | + | chr1_3:72813854-72813873 | Msa0139230:intron | 30.0% |
| ! | ATCAATGCATGCATTTTGAA+CGG | + | chr1_3:72814154-72814173 | Msa0139230:intron | 30.0% |
| TGGCAAAAGAATAAATGAGT+GGG | - | chr1_3:72814354-72814373 | None:intergenic | 30.0% | |
| TTGGCAAAAGAATAAATGAG+TGG | - | chr1_3:72814355-72814374 | None:intergenic | 30.0% | |
| ! | TGTCTATTGATTGCATTAGA+TGG | + | chr1_3:72814384-72814403 | Msa0139230:intron | 30.0% |
| !! | TTTACCAGCATTTTTGAAGA+GGG | + | chr1_3:72814528-72814547 | Msa0139230:CDS | 30.0% |
| TGGACAATATCTCGGAAAAA+CGG | + | chr1_3:72810906-72810925 | Msa0139230:CDS | 35.0% | |
| ! | TTAGCCTTCAAACAACAAGA+AGG | - | chr1_3:72810995-72811014 | None:intergenic | 35.0% |
| !! | TTCTTGTTGTTTGAAGGCTA+AGG | + | chr1_3:72810994-72811013 | Msa0139230:CDS | 35.0% |
| TCACAATCTCAATCTTCTTG+TGG | + | chr1_3:72811073-72811092 | Msa0139230:CDS | 35.0% | |
| ATTATGCAATTGGACAAACC+TGG | - | chr1_3:72811267-72811286 | None:intergenic | 35.0% | |
| GATGTCTAACTTTGATCGAA+TGG | + | chr1_3:72811311-72811330 | Msa0139230:intron | 35.0% | |
| AATTGTTCAGTTGACTGAGA+AGG | + | chr1_3:72811898-72811917 | Msa0139230:CDS | 35.0% | |
| GGAGATGAGTTATCATTTCT+TGG | - | chr1_3:72811937-72811956 | None:intergenic | 35.0% | |
| ! | GTTTTACCTTATCATCGTGA+TGG | + | chr1_3:72812000-72812019 | Msa0139230:intron | 35.0% |
| CTGATCAAAATCAAACGGTT+TGG | - | chr1_3:72812068-72812087 | None:intergenic | 35.0% | |
| CTCGTCTGATCAAAATCAAA+CGG | - | chr1_3:72812073-72812092 | None:intergenic | 35.0% | |
| TCTGACTGATCTTGATGAAA+CGG | + | chr1_3:72812153-72812172 | Msa0139230:intron | 35.0% | |
| TTTACGAGTATAGTTCCTGA+GGG | - | chr1_3:72812311-72812330 | None:intergenic | 35.0% | |
| ! | TTTTACGAGTATAGTTCCTG+AGG | - | chr1_3:72812312-72812331 | None:intergenic | 35.0% |
| CAGGAACTATACTCGTAAAA+TGG | + | chr1_3:72812312-72812331 | Msa0139230:intron | 35.0% | |
| ! | TATTTTCCAGAGTTAGCTGT+TGG | + | chr1_3:72812651-72812670 | Msa0139230:CDS | 35.0% |
| TTTCTTAGATGCACTTCTGA+AGG | + | chr1_3:72812847-72812866 | Msa0139230:CDS | 35.0% | |
| ! | ATCTCTTTCTTTGGTGGTTT+AGG | + | chr1_3:72813391-72813410 | Msa0139230:intron | 35.0% |
| !! | TTATCAAAGGCATTAAGACC+TGG | + | chr1_3:72813454-72813473 | Msa0139230:CDS | 35.0% |
| ! | GTAATATGGCAGAAAGTATG+TGG | + | chr1_3:72813488-72813507 | Msa0139230:CDS | 35.0% |
| GAGTCTGAACAATAATACCT+TGG | - | chr1_3:72813604-72813623 | None:intergenic | 35.0% | |
| ATCGGGTTTACAAAATCAAC+TGG | - | chr1_3:72813737-72813756 | None:intergenic | 35.0% | |
| !!! | CTTTTTCAATAGGGTTGATC+GGG | - | chr1_3:72813754-72813773 | None:intergenic | 35.0% |
| CTAAGCACATAAGAGAACTT+AGG | + | chr1_3:72813786-72813805 | Msa0139230:CDS | 35.0% | |
| ! | TACAAAGTTAAAGGCGTGTT+CGG | + | chr1_3:72813863-72813882 | Msa0139230:intron | 35.0% |
| TGTAATCACAAGTGTCCTAT+CGG | - | chr1_3:72813908-72813927 | None:intergenic | 35.0% | |
| GTTGCGAACAATCATCATAT+TGG | + | chr1_3:72814067-72814086 | Msa0139230:intron | 35.0% | |
| ! | AAAATGGATTCGCTATCGTT+GGG | - | chr1_3:72814233-72814252 | None:intergenic | 35.0% |
| !! | CTTTACCAGCATTTTTGAAG+AGG | + | chr1_3:72814527-72814546 | Msa0139230:CDS | 35.0% |
| ! | TGTCCACAATATTCTGGCTA+GGG | - | chr1_3:72810892-72810911 | None:intergenic | 40.0% |
| ! | TTGTCCACAATATTCTGGCT+AGG | - | chr1_3:72810893-72810912 | None:intergenic | 40.0% |
| ATCCAGAAAGAACAGGAGAA+TGG | - | chr1_3:72811048-72811067 | None:intergenic | 40.0% | |
| ATTCTCCTGTTCTTTCTGGA+TGG | + | chr1_3:72811047-72811066 | Msa0139230:CDS | 40.0% | |
| GAATGGTTCAGATGAATGTG+TGG | + | chr1_3:72811328-72811347 | Msa0139230:intron | 40.0% | |
| !! | TGTTGATGACACAGTGAGTT+AGG | - | chr1_3:72811540-72811559 | None:intergenic | 40.0% |
| !! | GGAAAAGTGCTTGTACTTGA+TGG | + | chr1_3:72811875-72811894 | Msa0139230:CDS | 40.0% |
| GGGACTGAATTGAACAAAGT+GGG | - | chr1_3:72811958-72811977 | None:intergenic | 40.0% | |
| CGAATTCCATCACGATGATA+AGG | - | chr1_3:72812009-72812028 | None:intergenic | 40.0% | |
| ! | CGGTTTGGATCGATTAACAA+TGG | - | chr1_3:72812053-72812072 | None:intergenic | 40.0% |
| GTCAGACACTAACTAGAACT+TGG | - | chr1_3:72812139-72812158 | None:intergenic | 40.0% | |
| GTGTTGAATGTGTGACTGAA+TGG | + | chr1_3:72812184-72812203 | Msa0139230:intron | 40.0% | |
| TGAATGTGTGACTGAATGGT+TGG | + | chr1_3:72812188-72812207 | Msa0139230:intron | 40.0% | |
| ATTCGTGAGGTGTAGTTTAG+TGG | + | chr1_3:72812243-72812262 | Msa0139230:intron | 40.0% | |
| !!! | ATCCAGGTTTTAGTTGTTGG+TGG | + | chr1_3:72812438-72812457 | Msa0139230:intron | 40.0% |
| TCAAATCCAACAGCTAACTC+TGG | - | chr1_3:72812660-72812679 | None:intergenic | 40.0% | |
| !! | TTCTAGCCATTTTGATCCTC+TGG | - | chr1_3:72813212-72813231 | None:intergenic | 40.0% |
| !! | TTGGTGACACGTTTTAGTGT+CGG | + | chr1_3:72813268-72813287 | Msa0139230:intron | 40.0% |
| ATATTACATAGCACTCCACC+AGG | - | chr1_3:72813475-72813494 | None:intergenic | 40.0% | |
| ! | TGGTGGAGTGCTATGTAATA+TGG | + | chr1_3:72813474-72813493 | Msa0139230:CDS | 40.0% |
| GCTTCATACTCACCTTATTC+AGG | + | chr1_3:72813510-72813529 | Msa0139230:CDS | 40.0% | |
| TGGAGATCATGTCCTGAATA+AGG | - | chr1_3:72813525-72813544 | None:intergenic | 40.0% | |
| TTGCTTCTGTACGTTATGCA+TGG | + | chr1_3:72813560-72813579 | Msa0139230:CDS | 40.0% | |
| CTAGTGTTCCAACATATCCA+AGG | + | chr1_3:72813584-72813603 | Msa0139230:CDS | 40.0% | |
| GGGTTTACAAAATCAACTGG+TGG | - | chr1_3:72813734-72813753 | None:intergenic | 40.0% | |
| ACTTAGGTTCTATAACTCGG+AGG | + | chr1_3:72813802-72813821 | Msa0139230:CDS | 40.0% | |
| GCGAACAATCATCATATTGG+TGG | + | chr1_3:72814070-72814089 | Msa0139230:intron | 40.0% | |
| ! | ATCATCATATTGGTGGCCAT+TGG | + | chr1_3:72814077-72814096 | Msa0139230:intron | 40.0% |
| ! | GAAAATGGATTCGCTATCGT+TGG | - | chr1_3:72814234-72814253 | None:intergenic | 40.0% |
| ATGCCCTAGCCAGAATATTG+TGG | + | chr1_3:72810886-72810905 | Msa0139230:CDS | 45.0% | |
| ATCTCGGAAAAACGGTGTAG+CGG | + | chr1_3:72810914-72810933 | Msa0139230:CDS | 45.0% | |
| TGCCATTCTCCTGTTCTTTC+TGG | + | chr1_3:72811043-72811062 | Msa0139230:CDS | 45.0% | |
| GAGAACCATCCAGAAAGAAC+AGG | - | chr1_3:72811055-72811074 | None:intergenic | 45.0% | |
| TTCAACAATCCAATGTGGCC+AGG | + | chr1_3:72811246-72811265 | Msa0139230:intron | 45.0% | |
| GGGGACTGAATTGAACAAAG+TGG | - | chr1_3:72811959-72811978 | None:intergenic | 45.0% | |
| AATTCGATTCCATGCAGTCG+TGG | + | chr1_3:72812023-72812042 | Msa0139230:intron | 45.0% | |
| AATGGATATCCACGACTGCA+TGG | - | chr1_3:72812035-72812054 | None:intergenic | 45.0% | |
| TACGGAGTTTGAATTCCCTC+AGG | + | chr1_3:72812293-72812312 | Msa0139230:intron | 45.0% | |
| CACCACCAACAACTAAAACC+TGG | - | chr1_3:72812443-72812462 | None:intergenic | 45.0% | |
| !!! | CAGGTTTTAGTTGTTGGTGG+TGG | + | chr1_3:72812441-72812460 | Msa0139230:intron | 45.0% |
| !! | TTAGTTGTTGGTGGTGGAGA+TGG | + | chr1_3:72812447-72812466 | Msa0139230:CDS | 45.0% |
| CAACATGAAGTACAGAACGG+TGG | - | chr1_3:72812497-72812516 | None:intergenic | 45.0% | |
| AGATACCATCACCAACATGC+AGG | - | chr1_3:72812698-72812717 | None:intergenic | 45.0% | |
| ! | GTTGATTCCTCTGATCCAGT+TGG | + | chr1_3:72812889-72812908 | Msa0139230:CDS | 45.0% |
| TGACATACCAACTGGATCAG+AGG | - | chr1_3:72812899-72812918 | None:intergenic | 45.0% | |
| !! | TCAAAGGCATTAAGACCTGG+TGG | + | chr1_3:72813457-72813476 | Msa0139230:CDS | 45.0% |
| !! | ACCAGCATTTTTGAAGAGGG+AGG | + | chr1_3:72814531-72814550 | Msa0139230:CDS | 45.0% |
| ACCTCCCTCTTCAAAAATGC+TGG | - | chr1_3:72814535-72814554 | None:intergenic | 45.0% | |
| !! | AAAACGGTGTAGCGGACTTG+AGG | + | chr1_3:72810922-72810941 | Msa0139230:CDS | 50.0% |
| GTTTCAGACCCTGAACCTGA+GGG | + | chr1_3:72811016-72811035 | Msa0139230:CDS | 50.0% | |
| ! | GGCATTTTCCCTCAGGTTCA+GGG | - | chr1_3:72811027-72811046 | None:intergenic | 50.0% |
| ! | TGGCATTTTCCCTCAGGTTC+AGG | - | chr1_3:72811028-72811047 | None:intergenic | 50.0% |
| ! | GGAGAATGGCATTTTCCCTC+AGG | - | chr1_3:72811034-72811053 | None:intergenic | 50.0% |
| TTGGACAAACCTGGCCACAT+TGG | - | chr1_3:72811258-72811277 | None:intergenic | 50.0% | |
| !! | TGGAGATGGTGGAGTTCTGA+GGG | + | chr1_3:72812461-72812480 | Msa0139230:CDS | 50.0% |
| CATGAAGTACAGAACGGTGG+CGG | - | chr1_3:72812494-72812513 | None:intergenic | 50.0% | |
| CCAACATGCAGGTGTACTCT+AGG | - | chr1_3:72812687-72812706 | None:intergenic | 50.0% | |
| CCTAGAGTACACCTGCATGT+TGG | + | chr1_3:72812684-72812703 | Msa0139230:CDS | 50.0% | |
| ! | GTACACCTGCATGTTGGTGA+TGG | + | chr1_3:72812690-72812709 | Msa0139230:CDS | 50.0% |
| !! | GCAAAGTGTTGGTGCTACAG+AGG | - | chr1_3:72813235-72813254 | None:intergenic | 50.0% |
| ! | CTTCCTTGTTTGGCAAGCAG+TGG | + | chr1_3:72813674-72813693 | Msa0139230:intron | 50.0% |
| ACACCACTGCTTGCCAAACA+AGG | - | chr1_3:72813680-72813699 | None:intergenic | 50.0% | |
| TTGGCAAGCAGTGGTGTGAT+AGG | + | chr1_3:72813683-72813702 | Msa0139230:intron | 50.0% | |
| TGATACGTGTCGTGTCCGAT+AGG | + | chr1_3:72813890-72813909 | Msa0139230:intron | 50.0% | |
| TGGTGGCCATTGGATCAAGA+TGG | + | chr1_3:72814087-72814106 | Msa0139230:intron | 50.0% | |
| GGTGGCCATTGGATCAAGAT+GGG | + | chr1_3:72814088-72814107 | Msa0139230:intron | 50.0% | |
| GCCATTGGATCAAGATGGGA+CGG | + | chr1_3:72814092-72814111 | Msa0139230:intron | 50.0% | |
| ACCGTCCCATCTTGATCCAA+TGG | - | chr1_3:72814096-72814115 | None:intergenic | 50.0% | |
| ACCCTGCATTCACACAGCTA+GGG | - | chr1_3:72814208-72814227 | None:intergenic | 50.0% | |
| TACCCTGCATTCACACAGCT+AGG | - | chr1_3:72814209-72814228 | None:intergenic | 50.0% | |
| ! | AGCGGACTTGAGGTTGGAAC+AGG | + | chr1_3:72810932-72810951 | Msa0139230:CDS | 55.0% |
| GGTTTCAGACCCTGAACCTG+AGG | + | chr1_3:72811015-72811034 | Msa0139230:CDS | 55.0% | |
| !! | GTTGTTGGTGGTGGAGATGG+TGG | + | chr1_3:72812450-72812469 | Msa0139230:CDS | 55.0% |
| !! | GTGGAGATGGTGGAGTTCTG+AGG | + | chr1_3:72812460-72812479 | Msa0139230:CDS | 55.0% |
| TGGTGGTTTAGGTCCTGCTC+AGG | + | chr1_3:72813402-72813421 | Msa0139230:intron | 55.0% | |
| TTCTCCACGAGTTCCTGAGC+AGG | - | chr1_3:72813418-72813437 | None:intergenic | 55.0% | |
| ! | TGTGTCGACGTGTCAGTGTC+AGG | + | chr1_3:72813959-72813978 | Msa0139230:intron | 55.0% |
| TGCCCTAGCTGTGTGAATGC+AGG | + | chr1_3:72814203-72814222 | Msa0139230:intron | 55.0% | |
| GCCCTAGCTGTGTGAATGCA+GGG | + | chr1_3:72814204-72814223 | Msa0139230:intron | 55.0% | |
| !! | CGGTGTAGCGGACTTGAGGT+TGG | + | chr1_3:72810926-72810945 | Msa0139230:CDS | 60.0% |
| AGGTCCTGCTCAGGAACTCG+TGG | + | chr1_3:72813411-72813430 | Msa0139230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72810881 | 72814603 | 72810881 | ID=Msa0139230;Name=Msa0139230 |
| chr1_3 | mRNA | 72810881 | 72814603 | 72810881 | ID=Msa0139230-mRNA-1;Parent=Msa0139230;Name=Msa0139230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|360 |
| chr1_3 | exon | 72810881 | 72811094 | 72810881 | ID=Msa0139230-mRNA-1:exon:25337;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72811704 | 72811780 | 72811704 | ID=Msa0139230-mRNA-1:exon:25338;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72811863 | 72811985 | 72811863 | ID=Msa0139230-mRNA-1:exon:25339;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72812444 | 72812548 | 72812444 | ID=Msa0139230-mRNA-1:exon:25340;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72812639 | 72812711 | 72812639 | ID=Msa0139230-mRNA-1:exon:25341;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72812839 | 72812910 | 72812839 | ID=Msa0139230-mRNA-1:exon:25342;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72813413 | 72813605 | 72813413 | ID=Msa0139230-mRNA-1:exon:25343;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72813694 | 72813823 | 72813694 | ID=Msa0139230-mRNA-1:exon:25344;Parent=Msa0139230-mRNA-1 |
| chr1_3 | exon | 72814508 | 72814603 | 72814508 | ID=Msa0139230-mRNA-1:exon:25345;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72810881 | 72811094 | 72810881 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72811704 | 72811780 | 72811704 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72811863 | 72811985 | 72811863 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72812444 | 72812548 | 72812444 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72812639 | 72812711 | 72812639 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72812839 | 72812910 | 72812839 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72813413 | 72813605 | 72813413 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72813694 | 72813823 | 72813694 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| chr1_3 | CDS | 72814508 | 72814603 | 72814508 | ID=Msa0139230-mRNA-1:cds;Parent=Msa0139230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
