Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060260 | XP_013466478.1 | 98.476 | 328 | 5 | 0 | 1 | 328 | 1 | 328 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060260 | sp|Q9XHZ8|Y1178_ARATH | 71.951 | 328 | 88 | 1 | 1 | 328 | 1 | 324 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060260 | A0A072VES8 | 98.476 | 328 | 5 | 0 | 1 | 328 | 1 | 328 | 0.0 | 672 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0060260 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060260 | Msa1240030 | -0.809877 | 1.522743e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060260 | MtrunA17_Chr1g0159831 | 97.879 | 330 | 5 | 1 | 1 | 328 | 1 | 330 | 0.0 | 667 |
| Msa0060260 | MtrunA17_Chr3g0124921 | 73.171 | 328 | 81 | 4 | 1 | 326 | 1 | 323 | 2.59e-177 | 493 |
| Msa0060260 | MtrunA17_Chr3g0103031 | 51.360 | 331 | 155 | 3 | 1 | 328 | 1 | 328 | 2.68e-121 | 352 |
| Msa0060260 | MtrunA17_Chr5g0447111 | 44.923 | 325 | 174 | 3 | 5 | 328 | 9 | 329 | 3.76e-100 | 298 |
| Msa0060260 | MtrunA17_Chr5g0447191 | 40.107 | 187 | 108 | 2 | 140 | 324 | 3 | 187 | 7.41e-43 | 146 |
| Msa0060260 | MtrunA17_Chr4g0029841 | 31.788 | 151 | 99 | 1 | 175 | 325 | 133 | 279 | 5.59e-21 | 90.9 |
| Msa0060260 | MtrunA17_Chr7g0259501 | 23.567 | 314 | 194 | 8 | 14 | 291 | 41 | 344 | 3.11e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060260 | AT1G21780.2 | 71.951 | 328 | 88 | 1 | 1 | 328 | 1 | 324 | 0.0 | 513 |
| Msa0060260 | AT1G21780.1 | 71.951 | 328 | 88 | 1 | 1 | 328 | 1 | 324 | 0.0 | 513 |
| Msa0060260 | AT1G55760.1 | 48.193 | 332 | 163 | 5 | 1 | 328 | 1 | 327 | 1.30e-110 | 325 |
| Msa0060260 | AT2G39760.2 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 4.07e-13 | 69.7 |
| Msa0060260 | AT2G39760.4 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 4.49e-13 | 69.7 |
| Msa0060260 | AT2G39760.3 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 4.49e-13 | 69.7 |
| Msa0060260 | AT2G39760.1 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 1.09e-12 | 68.9 |
Find 82 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTTCAAACTTGGTATT+TGG | 0.128764 | 1_2:+17914991 | Msa0060260:CDS |
| CGCAACCTCTCCTGTGTTTC+AGG | 0.153472 | 1_2:+17918114 | Msa0060260:CDS |
| CAATAAAACCCGAAGATTTC+TGG | 0.200729 | 1_2:+17918239 | Msa0060260:CDS |
| CAATGGAAAATCGACAATTT+TGG | 0.203214 | 1_2:+17914945 | Msa0060260:CDS |
| TATAAGTGGCAAGTTGATTT+TGG | 0.240197 | 1_2:+17918728 | Msa0060260:three_prime_UTR |
| TTCAAGAAGTGCTTACAATT+TGG | 0.244125 | 1_2:+17918521 | Msa0060260:CDS |
| TTGTATCTTGTAGTATGATA+TGG | 0.246533 | 1_2:+17918580 | Msa0060260:three_prime_UTR |
| ATCACTGATGTCGTATTTAT+TGG | 0.253571 | 1_2:-17918290 | None:intergenic |
| TGAACCTTCGCGTGTTTCTA+AGG | 0.294946 | 1_2:+17915149 | Msa0060260:CDS |
| ATTTGTCGATAGAGAGAAAT+AGG | 0.303621 | 1_2:+17915103 | Msa0060260:CDS |
| CTGTGCTTCCAGAAATCTTC+GGG | 0.311859 | 1_2:-17918247 | None:intergenic |
| TTCGCATTCTTGTTTGATTT+CGG | 0.315974 | 1_2:+17918424 | Msa0060260:CDS |
| CCAGACAGATACATGTTTGT+TGG | 0.357022 | 1_2:-17914790 | None:intergenic |
| GGTCTAGTGCGTTAGGTTGT+TGG | 0.358179 | 1_2:+17914811 | Msa0060260:five_prime_UTR |
| TTAGAAACACGCGAAGGTTC+AGG | 0.373550 | 1_2:-17915147 | None:intergenic |
| AGAAGAAGAAGAAGCAGTAT+TGG | 0.384918 | 1_2:-17915208 | None:intergenic |
| GTCTAGTGCGTTAGGTTGTT+GGG | 0.387326 | 1_2:+17914812 | Msa0060260:five_prime_UTR |
| TGTACCATCTGCAGTTATAA+TGG | 0.388784 | 1_2:-17918065 | None:intergenic |
| TCAAACTTGGTATTTGGAAC+TGG | 0.400132 | 1_2:+17914997 | Msa0060260:CDS |
| CAATTTCCCGATTAGCTCAA+TGG | 0.401221 | 1_2:+17914928 | Msa0060260:CDS |
| AGGAGAAATGTAAAATTTGC+GGG | 0.406211 | 1_2:-17915235 | None:intergenic |
| AAATCAGACCCTTTCAAACT+TGG | 0.408826 | 1_2:+17914984 | Msa0060260:CDS |
| CGAAGAATGAAACGAGCAAT+AGG | 0.409761 | 1_2:-17915180 | None:intergenic |
| CCTGTGCTTCCAGAAATCTT+CGG | 0.410951 | 1_2:-17918248 | None:intergenic |
| CTTTCTTCAACTTGTGCAGC+TGG | 0.413291 | 1_2:-17918396 | None:intergenic |
| CATTTGACATCTTAACAGAT+AGG | 0.422641 | 1_2:-17918689 | None:intergenic |
| TTTACTTTGTATTATAGTAC+TGG | 0.422917 | 1_2:+17918624 | Msa0060260:three_prime_UTR |
| AAGCACAGGCTGGCATTGCT+TGG | 0.427569 | 1_2:+17918262 | Msa0060260:CDS |
| GAACCTGTGATGACTTTGTC+TGG | 0.430022 | 1_2:+17917589 | Msa0060260:CDS |
| AGTGCTTACAATTTGGAAGT+AGG | 0.449828 | 1_2:+17918528 | Msa0060260:CDS |
| TTGTTATTTAGTTATATAAG+TGG | 0.456748 | 1_2:+17918714 | Msa0060260:three_prime_UTR |
| TCGAGAGGCTTAATGAGGCT+TGG | 0.458763 | 1_2:+17918368 | Msa0060260:CDS |
| AACTGCAGATGGTACACTTA+AGG | 0.462466 | 1_2:+17918072 | Msa0060260:CDS |
| TTCCAAATACCAAGTTTGAA+AGG | 0.463827 | 1_2:-17914993 | None:intergenic |
| GTATCTCAGAAGGGCTGTGC+AGG | 0.467413 | 1_2:-17918206 | None:intergenic |
| TCCAAATACCAAGTTTGAAA+GGG | 0.471833 | 1_2:-17914992 | None:intergenic |
| ATCAGATGGCCATATGGAAC+TGG | 0.472723 | 1_2:-17917960 | None:intergenic |
| CAGGAGAAATGTAAAATTTG+CGG | 0.484755 | 1_2:-17915236 | None:intergenic |
| CCTGTGGATACTACATTCCT+TGG | 0.490016 | 1_2:+17917612 | Msa0060260:CDS |
| GTTATGTCATTGAACTATAT+AGG | 0.494471 | 1_2:+17918550 | Msa0060260:three_prime_UTR |
| CCGAGTTAAGATCTTCAAGT+AGG | 0.498960 | 1_2:-17918336 | None:intergenic |
| TCTGTCTGGTCTAGTGCGTT+AGG | 0.502496 | 1_2:+17914804 | Msa0060260:five_prime_UTR |
| TGATACAAGGCCTGAAACAC+AGG | 0.516846 | 1_2:-17918124 | None:intergenic |
| TTCGCTGCTCTTGTGATACA+AGG | 0.517258 | 1_2:-17918137 | None:intergenic |
| CCAACAAACATGTATCTGTC+TGG | 0.518769 | 1_2:+17914790 | Msa0060260:five_prime_UTR |
| CCTACTTGAAGATCTTAACT+CGG | 0.524632 | 1_2:+17918336 | Msa0060260:CDS |
| TTCCATACATGTATCTCAGA+AGG | 0.526999 | 1_2:-17918216 | None:intergenic |
| CCGAAGATTTCTGGAAGCAC+AGG | 0.532000 | 1_2:+17918248 | Msa0060260:CDS |
| GTGGAGAAGCCAGTTCCATA+TGG | 0.542653 | 1_2:+17917951 | Msa0060260:CDS |
| CAAGCATACGAGAGAGGCAT+CGG | 0.551846 | 1_2:-17918018 | None:intergenic |
| CTGAAACACAGGAGAGGTTG+CGG | 0.553064 | 1_2:-17918113 | None:intergenic |
| TGTTCTCGAGAGGCTTAATG+AGG | 0.554216 | 1_2:+17918363 | Msa0060260:CDS |
| CAGCTGCACAAGTTGAAGAA+AGG | 0.554405 | 1_2:+17918397 | Msa0060260:CDS |
| GCCCTTCTGAGATACATGTA+TGG | 0.559061 | 1_2:+17918214 | Msa0060260:CDS |
| ACAAAACATGGGAGATTCGA+AGG | 0.560639 | 1_2:+17914899 | Msa0060260:exon |
| AGTTCCATATGGCCATCTGA+TGG | 0.561027 | 1_2:+17917962 | Msa0060260:CDS |
| AGATTTCTGGAAGCACAGGC+TGG | 0.562698 | 1_2:+17918252 | Msa0060260:CDS |
| AAACAAAACAAAACAAAACA+TGG | 0.565821 | 1_2:+17914887 | Msa0060260:exon |
| TAATGCCACAGTTCATGAAA+GGG | 0.567644 | 1_2:+17917560 | Msa0060260:intron |
| GTAATGCCACAGTTCATGAA+AGG | 0.572992 | 1_2:+17917559 | Msa0060260:intron |
| TGATGACTTTGTCTGGCCTG+TGG | 0.574666 | 1_2:+17917596 | Msa0060260:CDS |
| CATTCAGAGGATGGATCTTG+AGG | 0.575267 | 1_2:-17917665 | None:intergenic |
| AATTAGAGACTCACATTCAG+AGG | 0.576553 | 1_2:-17917678 | None:intergenic |
| AGAGACTCACATTCAGAGGA+TGG | 0.576688 | 1_2:-17917674 | None:intergenic |
| CTCACCATTATAACTGCAGA+TGG | 0.586949 | 1_2:+17918061 | Msa0060260:CDS |
| CATCAATAATCAAGCGACCA+AGG | 0.591316 | 1_2:-17917629 | None:intergenic |
| GTGAACGGTGCATACCAGCT+TGG | 0.595643 | 1_2:+17914725 | Msa0060260:five_prime_UTR |
| CTACTTGAAGATCTTAACTC+GGG | 0.596940 | 1_2:+17918337 | Msa0060260:CDS |
| CCAAGGAATGTAGTATCCAC+AGG | 0.598731 | 1_2:-17917612 | None:intergenic |
| TCTGATTTCTTGTAAGAACA+TGG | 0.619813 | 1_2:-17914969 | None:intergenic |
| AGGCCAGACAAAGTCATCAC+AGG | 0.625083 | 1_2:-17917592 | None:intergenic |
| ATGGACTTAACTTGAGTGAA+CGG | 0.627013 | 1_2:+17914710 | None:intergenic |
| TCCATACATGTATCTCAGAA+GGG | 0.631167 | 1_2:-17918215 | None:intergenic |
| CTTCATCAAGCATACGAGAG+AGG | 0.633860 | 1_2:-17918024 | None:intergenic |
| AACAAAACAAAACAAAACAT+GGG | 0.638409 | 1_2:+17914888 | Msa0060260:exon |
| ACTCGGGAAATGTTCTCGAG+AGG | 0.641157 | 1_2:+17918353 | Msa0060260:CDS |
| AGAATGAAACGAGCAATAGG+AGG | 0.644603 | 1_2:-17915177 | None:intergenic |
| TGATCTCAAAGACGCATGCG+AGG | 0.646422 | 1_2:+17918309 | Msa0060260:CDS |
| CATCTGCAGTTATAATGGTG+AGG | 0.666008 | 1_2:-17918060 | None:intergenic |
| CAAGGCCTGAAACACAGGAG+AGG | 0.720476 | 1_2:-17918119 | None:intergenic |
| AGAAATGTAAAATTTGCGGG+AGG | 0.721522 | 1_2:-17915232 | None:intergenic |
| TGTTCCTTAGAAACACGCGA+AGG | 0.748205 | 1_2:-17915153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATACTATGTTGAATTTT+TGG | + | chr1_2:17915048-17915067 | Msa0060260:intron | 15.0% |
| !!! | TTATACTATGTTGAATTTTT+GGG | + | chr1_2:17915049-17915068 | Msa0060260:intron | 15.0% |
| !!! | CTTTTGTTAATAAAAAGTTT+AGG | + | chr1_2:17915759-17915778 | Msa0060260:intron | 15.0% |
| !! | GATAATATAAAGTACATAAA+GGG | + | chr1_2:17916942-17916961 | Msa0060260:intron | 15.0% |
| !! | ATAAAAAAAACTACAATGTT+GGG | - | chr1_2:17917241-17917260 | None:intergenic | 15.0% |
| !!! | ACTTATTTTTTGCAAATTTA+AGG | - | chr1_2:17917464-17917483 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTATATAAG+TGG | + | chr1_2:17918714-17918733 | Msa0060260:three_prime_UTR | 15.0% |
| !! | AAACAAAACAAAACAAAACA+TGG | + | chr1_2:17914887-17914906 | Msa0060260:exon | 20.0% |
| !! | AACAAAACAAAACAAAACAT+GGG | + | chr1_2:17914888-17914907 | Msa0060260:exon | 20.0% |
| !! | AATCCTACTAATAAAATTCA+AGG | - | chr1_2:17915730-17915749 | None:intergenic | 20.0% |
| !! | TATTACAAAAAAAATGCTTC+TGG | + | chr1_2:17916771-17916790 | Msa0060260:intron | 20.0% |
| !! | GTAAGATCTAAACAATATTA+TGG | - | chr1_2:17916890-17916909 | None:intergenic | 20.0% |
| !! | GGATAATATAAAGTACATAA+AGG | + | chr1_2:17916941-17916960 | Msa0060260:intron | 20.0% |
| !!! | TTTCTTAATTTTGTTGTGTA+GGG | - | chr1_2:17917138-17917157 | None:intergenic | 20.0% |
| !!! | ATTTCTTAATTTTGTTGTGT+AGG | - | chr1_2:17917139-17917158 | None:intergenic | 20.0% |
| !! | GCTATATTTAAATAGAGAAT+TGG | + | chr1_2:17917165-17917184 | Msa0060260:intron | 20.0% |
| !! | GATAAAAAAAACTACAATGT+TGG | - | chr1_2:17917242-17917261 | None:intergenic | 20.0% |
| !! | AATTTAGTAAACAAAAGAGA+GGG | - | chr1_2:17917394-17917413 | None:intergenic | 20.0% |
| !! | AAATTTAGTAAACAAAAGAG+AGG | - | chr1_2:17917395-17917414 | None:intergenic | 20.0% |
| !! | TGATGTAACTAGATATAATA+TGG | + | chr1_2:17917737-17917756 | Msa0060260:intron | 20.0% |
| !! | TTTACTTTGTATTATAGTAC+TGG | + | chr1_2:17918624-17918643 | Msa0060260:three_prime_UTR | 20.0% |
| !!! | GTTTTGTTTTGTTTTGTTTC+AGG | - | chr1_2:17914886-17914905 | None:intergenic | 25.0% |
| !!! | TTTACTATGTTGTTGTTTTC+AGG | + | chr1_2:17915079-17915098 | Msa0060260:intron | 25.0% |
| ! | AAAGAGATAATATACTAACC+AGG | - | chr1_2:17915258-17915277 | None:intergenic | 25.0% |
| !!! | TGAATCACTATTTTGATCAT+TGG | + | chr1_2:17915344-17915363 | Msa0060260:intron | 25.0% |
| !!! | GAATCACTATTTTGATCATT+GGG | + | chr1_2:17915345-17915364 | Msa0060260:intron | 25.0% |
| ! | TTGAAATTTCGATACATTGA+GGG | - | chr1_2:17915488-17915507 | None:intergenic | 25.0% |
| !! | TTTGAAATTTCGATACATTG+AGG | - | chr1_2:17915487-17915506 | None:intergenic | 25.0% |
| ! | TTTGTTAGTCAAAATAGTGT+GGG | - | chr1_2:17915448-17915467 | None:intergenic | 25.0% |
| !! | TTTGAAATTTCGATACATTG+AGG | + | chr1_2:17915487-17915506 | Msa0060260:intron | 25.0% |
| ! | TTGAAATTTCGATACATTGA+GGG | + | chr1_2:17915488-17915507 | Msa0060260:intron | 25.0% |
| ! | CTGATATTATAGTCATCAAA+GGG | - | chr1_2:17915562-17915581 | None:intergenic | 25.0% |
| ! | ACTGATATTATAGTCATCAA+AGG | - | chr1_2:17915563-17915582 | None:intergenic | 25.0% |
| ! | ACTATAATATCAGTTCCTAT+TGG | + | chr1_2:17915569-17915588 | Msa0060260:intron | 25.0% |
| ! | CTAACTAATCTTTACAAAAC+CGG | - | chr1_2:17915673-17915692 | None:intergenic | 25.0% |
| !! | TCTCCTTGAATTTTATTAGT+AGG | + | chr1_2:17915724-17915743 | Msa0060260:intron | 25.0% |
| ! | ATAAAAAGTTTAGGTGAGTT+TGG | + | chr1_2:17915768-17915787 | Msa0060260:intron | 25.0% |
| ! | TACTAATAGTCAATAAAGGT+TGG | - | chr1_2:17916048-17916067 | None:intergenic | 25.0% |
| !! | AACCTTTATTGACTATTAGT+AGG | + | chr1_2:17916047-17916066 | Msa0060260:intron | 25.0% |
| ! | ATCCTACTAATAGTCAATAA+AGG | - | chr1_2:17916052-17916071 | None:intergenic | 25.0% |
| ! | ATTCTCTAAACTATCATTAG+TGG | - | chr1_2:17916143-17916162 | None:intergenic | 25.0% |
| ! | AATGATAGTTTAGAGAATGA+AGG | + | chr1_2:17916145-17916164 | Msa0060260:intron | 25.0% |
| !!! | AGAATGAAGGTTTTTTATGA+TGG | + | chr1_2:17916158-17916177 | Msa0060260:intron | 25.0% |
| !! | AGTCACGATTTTCAATTTAT+GGG | + | chr1_2:17916194-17916213 | Msa0060260:intron | 25.0% |
| !!! | ATAGATTTTGAGAACTAGAT+TGG | + | chr1_2:17916233-17916252 | Msa0060260:intron | 25.0% |
| ! | AAAAGGAAAGACAATAAAAC+AGG | - | chr1_2:17916281-17916300 | None:intergenic | 25.0% |
| ! | AGAGTAAAGTGTGATAATTA+AGG | + | chr1_2:17916411-17916430 | Msa0060260:intron | 25.0% |
| ! | GAGTAAAGTGTGATAATTAA+GGG | + | chr1_2:17916412-17916431 | Msa0060260:intron | 25.0% |
| !! | TATTGAATGGAATGCATTTT+AGG | + | chr1_2:17916630-17916649 | Msa0060260:intron | 25.0% |
| ! | GATTGTTAACATACAACAAT+AGG | - | chr1_2:17916675-17916694 | None:intergenic | 25.0% |
| !!! | TTCTTAATTTTGTTGTGTAG+GGG | - | chr1_2:17917137-17917156 | None:intergenic | 25.0% |
| ! | TATATCTATAAATCCAAGAC+AGG | - | chr1_2:17917357-17917376 | None:intergenic | 25.0% |
| !!! | ATTAGCTCTGTATTTATTGT+TGG | - | chr1_2:17917426-17917445 | None:intergenic | 25.0% |
| ! | ACAAATAGATAGTTGTAGAA+CGG | - | chr1_2:17917790-17917809 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGAGTTACTTAAC+AGG | + | chr1_2:17917825-17917844 | Msa0060260:intron | 25.0% |
| ! | GTTATGTCATTGAACTATAT+AGG | + | chr1_2:17918550-17918569 | Msa0060260:three_prime_UTR | 25.0% |
| ! | TTGTATCTTGTAGTATGATA+TGG | + | chr1_2:17918580-17918599 | Msa0060260:three_prime_UTR | 25.0% |
| ! | CAATGGAAAATCGACAATTT+TGG | + | chr1_2:17914945-17914964 | Msa0060260:CDS | 30.0% |
| TCTGATTTCTTGTAAGAACA+TGG | - | chr1_2:17914972-17914991 | None:intergenic | 30.0% | |
| TCCAAATACCAAGTTTGAAA+GGG | - | chr1_2:17914995-17915014 | None:intergenic | 30.0% | |
| TTCCAAATACCAAGTTTGAA+AGG | - | chr1_2:17914996-17915015 | None:intergenic | 30.0% | |
| ATTTGTCGATAGAGAGAAAT+AGG | + | chr1_2:17915103-17915122 | Msa0060260:CDS | 30.0% | |
| AGGAGAAATGTAAAATTTGC+GGG | - | chr1_2:17915238-17915257 | None:intergenic | 30.0% | |
| CAGGAGAAATGTAAAATTTG+CGG | - | chr1_2:17915239-17915258 | None:intergenic | 30.0% | |
| CATTGGGATAATAGTCAATT+TGG | + | chr1_2:17915361-17915380 | Msa0060260:intron | 30.0% | |
| CTTTGTTAGTCAAAATAGTG+TGG | - | chr1_2:17915449-17915468 | None:intergenic | 30.0% | |
| ! | TGGTTATTTGTTACACATTC+AGG | + | chr1_2:17915518-17915537 | Msa0060260:intron | 30.0% |
| ! | CAAAGGGATAATAGTCATTT+TGG | - | chr1_2:17915546-17915565 | None:intergenic | 30.0% |
| ACACTATCTTTCAATGATGT+AGG | - | chr1_2:17915606-17915625 | None:intergenic | 30.0% | |
| !! | CGGTTTTGTAAAGATTAGTT+AGG | + | chr1_2:17915671-17915690 | Msa0060260:intron | 30.0% |
| TTAGTAGGATTATTAGCAGT+AGG | + | chr1_2:17916062-17916081 | Msa0060260:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_2:17916063-17916082 | Msa0060260:intron | 30.0% | |
| AAGAATCCATATCAATCAAC+GGG | - | chr1_2:17916120-17916139 | None:intergenic | 30.0% | |
| GAAGAATCCATATCAATCAA+CGG | - | chr1_2:17916121-17916140 | None:intergenic | 30.0% | |
| ! | GAGTCACGATTTTCAATTTA+TGG | + | chr1_2:17916193-17916212 | Msa0060260:intron | 30.0% |
| AAGTCTCAATATCAAGCAAA+AGG | - | chr1_2:17916298-17916317 | None:intergenic | 30.0% | |
| AACATTATCCCTTTCAAACA+CGG | - | chr1_2:17916361-17916380 | None:intergenic | 30.0% | |
| TGTTTGAAAGGGATAATGTT+TGG | + | chr1_2:17916361-17916380 | Msa0060260:intron | 30.0% | |
| GTTTGAAAGGGATAATGTTT+GGG | + | chr1_2:17916362-17916381 | Msa0060260:intron | 30.0% | |
| TTTGAAAGGGATAATGTTTG+GGG | + | chr1_2:17916363-17916382 | Msa0060260:intron | 30.0% | |
| TGATAATTAAGGGTTCTTAC+AGG | + | chr1_2:17916422-17916441 | Msa0060260:intron | 30.0% | |
| GATAATTAAGGGTTCTTACA+GGG | + | chr1_2:17916423-17916442 | Msa0060260:intron | 30.0% | |
| !!! | ACAGGGTAAGATTTAGTTTT+AGG | + | chr1_2:17916440-17916459 | Msa0060260:intron | 30.0% |
| !!! | TTTAGGTTATTTTTCCCCAT+TGG | + | chr1_2:17916457-17916476 | Msa0060260:intron | 30.0% |
| ATTTCCTTAGTATCGTAGTA+AGG | - | chr1_2:17916492-17916511 | None:intergenic | 30.0% | |
| TACTAAGGAAATACTCAAGA+AGG | + | chr1_2:17916500-17916519 | Msa0060260:intron | 30.0% | |
| ACTAAGGAAATACTCAAGAA+GGG | + | chr1_2:17916501-17916520 | Msa0060260:intron | 30.0% | |
| AAAAAAAATGCTTCTGGATC+TGG | + | chr1_2:17916777-17916796 | Msa0060260:intron | 30.0% | |
| ATCACCAAAAAAAGTTTCTG+CGG | + | chr1_2:17917259-17917278 | Msa0060260:intron | 30.0% | |
| !!! | TTTACCGCAGAAACTTTTTT+TGG | - | chr1_2:17917266-17917285 | None:intergenic | 30.0% |
| ACAATTTAACACTAGTTCAG+AGG | - | chr1_2:17917895-17917914 | None:intergenic | 30.0% | |
| ATCACTGATGTCGTATTTAT+TGG | - | chr1_2:17918293-17918312 | None:intergenic | 30.0% | |
| ! | TTCGCATTCTTGTTTGATTT+CGG | + | chr1_2:17918424-17918443 | Msa0060260:CDS | 30.0% |
| !! | TTCAAGAAGTGCTTACAATT+TGG | + | chr1_2:17918521-17918540 | Msa0060260:CDS | 30.0% |
| CATTTGACATCTTAACAGAT+AGG | - | chr1_2:17918692-17918711 | None:intergenic | 30.0% | |
| !!! | TATAAGTGGCAAGTTGATTT+TGG | + | chr1_2:17918728-17918747 | Msa0060260:three_prime_UTR | 30.0% |
| ! | GATTTTCCATTGAGCTAATC+GGG | - | chr1_2:17914937-17914956 | None:intergenic | 35.0% |
| ! | CGATTTTCCATTGAGCTAAT+CGG | - | chr1_2:17914938-17914957 | None:intergenic | 35.0% |
| AAATCAGACCCTTTCAAACT+TGG | + | chr1_2:17914984-17915003 | Msa0060260:CDS | 35.0% | |
| ACCCTTTCAAACTTGGTATT+TGG | + | chr1_2:17914991-17915010 | Msa0060260:CDS | 35.0% | |
| ! | TCAAACTTGGTATTTGGAAC+TGG | + | chr1_2:17914997-17915016 | Msa0060260:CDS | 35.0% |
| AGAAGAAGAAGAAGCAGTAT+TGG | - | chr1_2:17915211-17915230 | None:intergenic | 35.0% | |
| AGAAATGTAAAATTTGCGGG+AGG | - | chr1_2:17915235-17915254 | None:intergenic | 35.0% | |
| ! | CGCAAATTTTACATTTCTCC+TGG | + | chr1_2:17915237-17915256 | Msa0060260:CDS | 35.0% |
| !! | TAGGACTTGGTTTTTCCAAT+AGG | - | chr1_2:17915587-17915606 | None:intergenic | 35.0% |
| TCTTTCAATGATGTAGGACT+TGG | - | chr1_2:17915600-17915619 | None:intergenic | 35.0% | |
| ATCTTTCACCTTACAAAAGC+CGG | + | chr1_2:17915651-17915670 | Msa0060260:intron | 35.0% | |
| !! | TTACAAAACCGGCTTTTGTA+AGG | - | chr1_2:17915662-17915681 | None:intergenic | 35.0% |
| AGAATCCATATCAATCAACG+GGG | - | chr1_2:17916119-17916138 | None:intergenic | 35.0% | |
| !!! | GAAGGTTTTTTATGATGGAG+AGG | + | chr1_2:17916163-17916182 | Msa0060260:intron | 35.0% |
| TTGAAAGGGATAATGTTTGG+GGG | + | chr1_2:17916364-17916383 | Msa0060260:intron | 35.0% | |
| TTACTCTTTACTCACTTCAG+AGG | - | chr1_2:17916398-17916417 | None:intergenic | 35.0% | |
| TAAGGACTAAAGAACCAATG+GGG | - | chr1_2:17916474-17916493 | None:intergenic | 35.0% | |
| GTAAGGACTAAAGAACCAAT+GGG | - | chr1_2:17916475-17916494 | None:intergenic | 35.0% | |
| AGTAAGGACTAAAGAACCAA+TGG | - | chr1_2:17916476-17916495 | None:intergenic | 35.0% | |
| TAGTCCTTACTACGATACTA+AGG | + | chr1_2:17916485-17916504 | Msa0060260:intron | 35.0% | |
| !! | TCCAGAAGAGACTGATTTTT+GGG | + | chr1_2:17916526-17916545 | Msa0060260:intron | 35.0% |
| TCATACCTCTTAAACTGTTG+CGG | + | chr1_2:17916593-17916612 | Msa0060260:intron | 35.0% | |
| ! | ACAATCTAAATGATGACGTC+TGG | + | chr1_2:17916689-17916708 | Msa0060260:intron | 35.0% |
| ! | TGATGACGTCTGGTAAATTA+CGG | + | chr1_2:17916699-17916718 | Msa0060260:intron | 35.0% |
| AACCTCTTGTGTGAAAACAA+GGG | - | chr1_2:17917047-17917066 | None:intergenic | 35.0% | |
| !! | ACTTTGAGATTATTAGCTCG+TGG | - | chr1_2:17917206-17917225 | None:intergenic | 35.0% |
| TTCACCATACAATCTTGAAG+TGG | - | chr1_2:17917508-17917527 | None:intergenic | 35.0% | |
| TAATGCCACAGTTCATGAAA+GGG | + | chr1_2:17917560-17917579 | Msa0060260:intron | 35.0% | |
| AATTAGAGACTCACATTCAG+AGG | - | chr1_2:17917681-17917700 | None:intergenic | 35.0% | |
| !!! | TTTTTTTCCAACTGAGAGTC+AGG | + | chr1_2:17917928-17917947 | Msa0060260:intron | 35.0% |
| !!! | TTTTTTCCAACTGAGAGTCA+GGG | + | chr1_2:17917929-17917948 | Msa0060260:intron | 35.0% |
| TGTACCATCTGCAGTTATAA+TGG | - | chr1_2:17918068-17918087 | None:intergenic | 35.0% | |
| ! | CTTTTGACATGTCTTCTATG+TGG | - | chr1_2:17918183-17918202 | None:intergenic | 35.0% |
| TCCATACATGTATCTCAGAA+GGG | - | chr1_2:17918218-17918237 | None:intergenic | 35.0% | |
| TTCCATACATGTATCTCAGA+AGG | - | chr1_2:17918219-17918238 | None:intergenic | 35.0% | |
| CAATAAAACCCGAAGATTTC+TGG | + | chr1_2:17918239-17918258 | Msa0060260:CDS | 35.0% | |
| CCTACTTGAAGATCTTAACT+CGG | + | chr1_2:17918336-17918355 | Msa0060260:CDS | 35.0% | |
| CTACTTGAAGATCTTAACTC+GGG | + | chr1_2:17918337-17918356 | Msa0060260:CDS | 35.0% | |
| AGTGCTTACAATTTGGAAGT+AGG | + | chr1_2:17918528-17918547 | Msa0060260:CDS | 35.0% | |
| ! | TTTTCAATAAGCTGCCAAGC+TGG | - | chr1_2:17914742-17914761 | None:intergenic | 40.0% |
| CCAGACAGATACATGTTTGT+TGG | - | chr1_2:17914793-17914812 | None:intergenic | 40.0% | |
| CCAACAAACATGTATCTGTC+TGG | + | chr1_2:17914790-17914809 | Msa0060260:five_prime_UTR | 40.0% | |
| ACAAAACATGGGAGATTCGA+AGG | + | chr1_2:17914899-17914918 | Msa0060260:exon | 40.0% | |
| ! | CAATTTCCCGATTAGCTCAA+TGG | + | chr1_2:17914928-17914947 | Msa0060260:CDS | 40.0% |
| AGAATGAAACGAGCAATAGG+AGG | - | chr1_2:17915180-17915199 | None:intergenic | 40.0% | |
| CGAAGAATGAAACGAGCAAT+AGG | - | chr1_2:17915183-17915202 | None:intergenic | 40.0% | |
| ! | GGCTACTTGTTACACATTCA+GGG | - | chr1_2:17915388-17915407 | None:intergenic | 40.0% |
| ! | TGGCTACTTGTTACACATTC+AGG | - | chr1_2:17915389-17915408 | None:intergenic | 40.0% |
| GATACATTGAGGGACTATTG+TGG | - | chr1_2:17915498-17915517 | None:intergenic | 40.0% | |
| GATACATTGAGGGACTATTG+TGG | + | chr1_2:17915498-17915517 | Msa0060260:intron | 40.0% | |
| ! | AGTTTAGGTGAGTTTGGTTC+CGG | + | chr1_2:17915774-17915793 | Msa0060260:intron | 40.0% |
| AACTCCTTACCAACTGAGTT+GGG | + | chr1_2:17915892-17915911 | Msa0060260:intron | 40.0% | |
| AACGTGAGAATCTCTTTGGT+GGG | - | chr1_2:17915966-17915985 | None:intergenic | 40.0% | |
| TGTCAACGTGAGAATCTCTT+TGG | - | chr1_2:17915970-17915989 | None:intergenic | 40.0% | |
| AGTTTGACTCATATCCGCAA+GGG | - | chr1_2:17916011-17916030 | None:intergenic | 40.0% | |
| ! | TCAATAAAGGTTGGCTCAGT+TGG | - | chr1_2:17916039-17916058 | None:intergenic | 40.0% |
| AGGATTATTAGCAGTAGGGT+TGG | + | chr1_2:17916067-17916086 | Msa0060260:intron | 40.0% | |
| TGGACTGCAAACATGAACTA+AGG | + | chr1_2:17916087-17916106 | Msa0060260:intron | 40.0% | |
| ! | AATGTCCCCGTTGATTGATA+TGG | + | chr1_2:17916111-17916130 | Msa0060260:intron | 40.0% |
| ATCGAGAGTTAGAGGAAATG+AGG | - | chr1_2:17916338-17916357 | None:intergenic | 40.0% | |
| TGAAAGGGATAATGTTTGGG+GGG | + | chr1_2:17916365-17916384 | Msa0060260:intron | 40.0% | |
| !! | GTCCAGAAGAGACTGATTTT+TGG | + | chr1_2:17916525-17916544 | Msa0060260:intron | 40.0% |
| ACCCAAAAATCAGTCTCTTC+TGG | - | chr1_2:17916530-17916549 | None:intergenic | 40.0% | |
| !! | AGAAGAGACTGATTTTTGGG+TGG | + | chr1_2:17916529-17916548 | Msa0060260:intron | 40.0% |
| !!! | GAAGAGACTGATTTTTGGGT+GGG | + | chr1_2:17916530-17916549 | Msa0060260:intron | 40.0% |
| !!! | AAGAGACTGATTTTTGGGTG+GGG | + | chr1_2:17916531-17916550 | Msa0060260:intron | 40.0% |
| !! | GGGAAAAGAGAGGTATTGAA+TGG | + | chr1_2:17916617-17916636 | Msa0060260:intron | 40.0% |
| GATGACGTCTGGTAAATTAC+GGG | + | chr1_2:17916700-17916719 | Msa0060260:intron | 40.0% | |
| CAAGGGAGACAATAATAAGC+AGG | - | chr1_2:17916847-17916866 | None:intergenic | 40.0% | |
| CAACACTCAAGTTTCGTATC+AGG | + | chr1_2:17916909-17916928 | Msa0060260:intron | 40.0% | |
| TTTCGTATCAGGAAACATGC+TGG | + | chr1_2:17916920-17916939 | Msa0060260:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_2:17917016-17917035 | None:intergenic | 40.0% | |
| CTTGTGTGAAAACAAGGGTA+AGG | - | chr1_2:17917042-17917061 | None:intergenic | 40.0% | |
| !!! | TACCCTTGTTTTCACACAAG+AGG | + | chr1_2:17917042-17917061 | Msa0060260:intron | 40.0% |
| CAACCTCTTGTGTGAAAACA+AGG | - | chr1_2:17917048-17917067 | None:intergenic | 40.0% | |
| GTTTCTGCGGTAAACTCATA+TGG | + | chr1_2:17917272-17917291 | Msa0060260:intron | 40.0% | |
| CAGGTCACTAGATCTACAAT+TGG | - | chr1_2:17917338-17917357 | None:intergenic | 40.0% | |
| !! | TGTGCCACTTCAAGATTGTA+TGG | + | chr1_2:17917501-17917520 | Msa0060260:intron | 40.0% |
| GTATGGTGAAATGCTGATAG+AGG | + | chr1_2:17917518-17917537 | Msa0060260:intron | 40.0% | |
| TCATGAACTGTGGCATTACA+GGG | - | chr1_2:17917558-17917577 | None:intergenic | 40.0% | |
| TTCATGAACTGTGGCATTAC+AGG | - | chr1_2:17917559-17917578 | None:intergenic | 40.0% | |
| GTAATGCCACAGTTCATGAA+AGG | + | chr1_2:17917559-17917578 | Msa0060260:intron | 40.0% | |
| CATCAATAATCAAGCGACCA+AGG | - | chr1_2:17917632-17917651 | None:intergenic | 40.0% | |
| ! | TTTTCCATCAGATGGCCATA+TGG | - | chr1_2:17917969-17917988 | None:intergenic | 40.0% |
| ! | GAATGCAGTTTTCCATCAGA+TGG | - | chr1_2:17917977-17917996 | None:intergenic | 40.0% |
| CATCTGCAGTTATAATGGTG+AGG | - | chr1_2:17918063-17918082 | None:intergenic | 40.0% | |
| CTCACCATTATAACTGCAGA+TGG | + | chr1_2:17918061-17918080 | Msa0060260:CDS | 40.0% | |
| AACTGCAGATGGTACACTTA+AGG | + | chr1_2:17918072-17918091 | Msa0060260:CDS | 40.0% | |
| CCGAGTTAAGATCTTCAAGT+AGG | - | chr1_2:17918339-17918358 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCGTCATGCAGACA+GGG | + | chr1_2:17918480-17918499 | Msa0060260:CDS | 40.0% |
| !!! | AGTGGCAAGTTGATTTTGGT+TGG | + | chr1_2:17918732-17918751 | Msa0060260:three_prime_UTR | 40.0% |
| ! | GTCTAGTGCGTTAGGTTGTT+GGG | + | chr1_2:17914812-17914831 | Msa0060260:five_prime_UTR | 45.0% |
| TTAGAAACACGCGAAGGTTC+AGG | - | chr1_2:17915150-17915169 | None:intergenic | 45.0% | |
| ! | TGAACCTTCGCGTGTTTCTA+AGG | + | chr1_2:17915149-17915168 | Msa0060260:CDS | 45.0% |
| TGTTCCTTAGAAACACGCGA+AGG | - | chr1_2:17915156-17915175 | None:intergenic | 45.0% | |
| ! | GTTTAGGTGAGTTTGGTTCC+GGG | + | chr1_2:17915775-17915794 | Msa0060260:intron | 45.0% |
| ! | TTTAGGTGAGTTTGGTTCCG+GGG | + | chr1_2:17915776-17915795 | Msa0060260:intron | 45.0% |
| CGCATGAGAATCTCTTTGGT+GGG | - | chr1_2:17915830-17915849 | None:intergenic | 45.0% | |
| CCACCAAAGAGATTCTCATG+CGG | + | chr1_2:17915828-17915847 | Msa0060260:intron | 45.0% | |
| CACCAAAGAGATTCTCATGC+GGG | + | chr1_2:17915829-17915848 | Msa0060260:intron | 45.0% | |
| GTTGGATTCATATCCCGCAA+GGG | - | chr1_2:17915875-17915894 | None:intergenic | 45.0% | |
| AGTTGGATTCATATCCCGCA+AGG | - | chr1_2:17915876-17915895 | None:intergenic | 45.0% | |
| !! | CAACTCAGTTGGTAAGGAGT+TGG | - | chr1_2:17915893-17915912 | None:intergenic | 45.0% |
| CAACTCCTTACCAACTGAGT+TGG | + | chr1_2:17915891-17915910 | Msa0060260:intron | 45.0% | |
| CAACGTGAGAATCTCTTTGG+TGG | - | chr1_2:17915967-17915986 | None:intergenic | 45.0% | |
| GAGTTTGACTCATATCCGCA+AGG | - | chr1_2:17916012-17916031 | None:intergenic | 45.0% | |
| ! | AAAGGTTGGCTCAGTTGGTA+AGG | - | chr1_2:17916034-17916053 | None:intergenic | 45.0% |
| AAACACGGATCGAGAGTTAG+AGG | - | chr1_2:17916346-17916365 | None:intergenic | 45.0% | |
| ACTCTCGATCCGTGTTTGAA+AGG | + | chr1_2:17916349-17916368 | Msa0060260:intron | 45.0% | |
| CTCTCGATCCGTGTTTGAAA+GGG | + | chr1_2:17916350-17916369 | Msa0060260:intron | 45.0% | |
| TACCTCTTAAACTGTTGCGG+AGG | + | chr1_2:17916596-17916615 | Msa0060260:intron | 45.0% | |
| ACCTCTTAAACTGTTGCGGA+GGG | + | chr1_2:17916597-17916616 | Msa0060260:intron | 45.0% | |
| AGGATTCGTCAGATGATGCA+GGG | - | chr1_2:17916827-17916846 | None:intergenic | 45.0% | |
| AAAGTACATAAAGGGCAGCC+CGG | + | chr1_2:17916950-17916969 | Msa0060260:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_2:17917017-17917036 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_2:17917020-17917039 | None:intergenic | 45.0% | |
| ! | TCACACAAGAGGTTGTTTCC+AGG | + | chr1_2:17917053-17917072 | Msa0060260:intron | 45.0% |
| TCACGTGACTGAAAGGTTAC+GGG | - | chr1_2:17917086-17917105 | None:intergenic | 45.0% | |
| GTCACGTGACTGAAAGGTTA+CGG | - | chr1_2:17917087-17917106 | None:intergenic | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr1_2:17917093-17917112 | None:intergenic | 45.0% | |
| ACAACTTTACTGTTGCGCCA+AGG | + | chr1_2:17917108-17917127 | Msa0060260:intron | 45.0% | |
| GTAGATCTAGTGACCTGTCT+TGG | + | chr1_2:17917341-17917360 | Msa0060260:intron | 45.0% | |
| AAGCACCCTTTCATGAACTG+TGG | - | chr1_2:17917568-17917587 | None:intergenic | 45.0% | |
| GAACCTGTGATGACTTTGTC+TGG | + | chr1_2:17917589-17917608 | Msa0060260:CDS | 45.0% | |
| CCAAGGAATGTAGTATCCAC+AGG | - | chr1_2:17917615-17917634 | None:intergenic | 45.0% | |
| CCTGTGGATACTACATTCCT+TGG | + | chr1_2:17917612-17917631 | Msa0060260:CDS | 45.0% | |
| CATTCAGAGGATGGATCTTG+AGG | - | chr1_2:17917668-17917687 | None:intergenic | 45.0% | |
| AGAGACTCACATTCAGAGGA+TGG | - | chr1_2:17917677-17917696 | None:intergenic | 45.0% | |
| ATCAGATGGCCATATGGAAC+TGG | - | chr1_2:17917963-17917982 | None:intergenic | 45.0% | |
| AGTTCCATATGGCCATCTGA+TGG | + | chr1_2:17917962-17917981 | Msa0060260:CDS | 45.0% | |
| CTTCATCAAGCATACGAGAG+AGG | - | chr1_2:17918027-17918046 | None:intergenic | 45.0% | |
| TGATACAAGGCCTGAAACAC+AGG | - | chr1_2:17918127-17918146 | None:intergenic | 45.0% | |
| TTCGCTGCTCTTGTGATACA+AGG | - | chr1_2:17918140-17918159 | None:intergenic | 45.0% | |
| !! | GCCCTTCTGAGATACATGTA+TGG | + | chr1_2:17918214-17918233 | Msa0060260:CDS | 45.0% |
| CTGTGCTTCCAGAAATCTTC+GGG | - | chr1_2:17918250-17918269 | None:intergenic | 45.0% | |
| CCTGTGCTTCCAGAAATCTT+CGG | - | chr1_2:17918251-17918270 | None:intergenic | 45.0% | |
| TGTTCTCGAGAGGCTTAATG+AGG | + | chr1_2:17918363-17918382 | Msa0060260:CDS | 45.0% | |
| CTTTCTTCAACTTGTGCAGC+TGG | - | chr1_2:17918399-17918418 | None:intergenic | 45.0% | |
| ! | CAGCTGCACAAGTTGAAGAA+AGG | + | chr1_2:17918397-17918416 | Msa0060260:CDS | 45.0% |
| !!! | CGTTTTTTCGTCATGCAGAC+AGG | + | chr1_2:17918479-17918498 | Msa0060260:CDS | 45.0% |
| TCTGTCTGGTCTAGTGCGTT+AGG | + | chr1_2:17914804-17914823 | Msa0060260:five_prime_UTR | 50.0% | |
| ! | GGTCTAGTGCGTTAGGTTGT+TGG | + | chr1_2:17914811-17914830 | Msa0060260:five_prime_UTR | 50.0% |
| CCGCATGAGAATCTCTTTGG+TGG | - | chr1_2:17915831-17915850 | None:intergenic | 50.0% | |
| TGCCCGCATGAGAATCTCTT+TGG | - | chr1_2:17915834-17915853 | None:intergenic | 50.0% | |
| ! | GAAGCCCAACTCAGTTGGTA+AGG | - | chr1_2:17915899-17915918 | None:intergenic | 50.0% |
| TCCCTCCGCAACAGTTTAAG+AGG | - | chr1_2:17916601-17916620 | None:intergenic | 50.0% | |
| ACGACAGTGAATGCAGATGC+AGG | - | chr1_2:17916738-17916757 | None:intergenic | 50.0% | |
| CAGGATTCGTCAGATGATGC+AGG | - | chr1_2:17916828-17916847 | None:intergenic | 50.0% | |
| ATTATTGTCTCCCTTGCCCC+AGG | + | chr1_2:17916851-17916870 | Msa0060260:intron | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr1_2:17916976-17916995 | Msa0060260:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr1_2:17916977-17916996 | Msa0060260:intron | 50.0% | |
| AAGGTTACGGGTTCAAGTCC+TGG | - | chr1_2:17917074-17917093 | None:intergenic | 50.0% | |
| TTGTTGTGTAGGGGAAGCCT+TGG | - | chr1_2:17917128-17917147 | None:intergenic | 50.0% | |
| AGGCCAGACAAAGTCATCAC+AGG | - | chr1_2:17917595-17917614 | None:intergenic | 50.0% | |
| TGATGACTTTGTCTGGCCTG+TGG | + | chr1_2:17917596-17917615 | Msa0060260:CDS | 50.0% | |
| CTAGTTCAGAGGTTCGCTGA+GGG | - | chr1_2:17917884-17917903 | None:intergenic | 50.0% | |
| ACTAGTTCAGAGGTTCGCTG+AGG | - | chr1_2:17917885-17917904 | None:intergenic | 50.0% | |
| TTTCCAACTGAGAGTCAGGG+TGG | + | chr1_2:17917932-17917951 | Msa0060260:intron | 50.0% | |
| GTGGAGAAGCCAGTTCCATA+TGG | + | chr1_2:17917951-17917970 | Msa0060260:CDS | 50.0% | |
| ! | CAAGCATACGAGAGAGGCAT+CGG | - | chr1_2:17918021-17918040 | None:intergenic | 50.0% |
| CTGAAACACAGGAGAGGTTG+CGG | - | chr1_2:17918116-17918135 | None:intergenic | 50.0% | |
| ! | CCGAAGATTTCTGGAAGCAC+AGG | + | chr1_2:17918248-17918267 | Msa0060260:CDS | 50.0% |
| ! | AGATTTCTGGAAGCACAGGC+TGG | + | chr1_2:17918252-17918271 | Msa0060260:CDS | 50.0% |
| TGATCTCAAAGACGCATGCG+AGG | + | chr1_2:17918309-17918328 | Msa0060260:CDS | 50.0% | |
| ACTCGGGAAATGTTCTCGAG+AGG | + | chr1_2:17918353-17918372 | Msa0060260:CDS | 50.0% | |
| TCGAGAGGCTTAATGAGGCT+TGG | + | chr1_2:17918368-17918387 | Msa0060260:CDS | 50.0% | |
| GTGAACGGTGCATACCAGCT+TGG | + | chr1_2:17914725-17914744 | Msa0060260:five_prime_UTR | 55.0% | |
| ! | TTTGGTTCCGGGGCTGACTA+AGG | + | chr1_2:17915786-17915805 | Msa0060260:intron | 55.0% |
| TTGGTTCCGGGGCTGACTAA+GGG | + | chr1_2:17915787-17915806 | Msa0060260:intron | 55.0% | |
| ! | TTCATATCCCGCAAGGGCGT+GGG | - | chr1_2:17915869-17915888 | None:intergenic | 55.0% |
| ATTCATATCCCGCAAGGGCG+TGG | - | chr1_2:17915870-17915889 | None:intergenic | 55.0% | |
| ! | ACCAACTGAGTTGGGCTTCG+AGG | + | chr1_2:17915900-17915919 | Msa0060260:intron | 55.0% |
| TTGGGCTTCGAGGCTGACTA+GGG | + | chr1_2:17915910-17915929 | Msa0060260:intron | 55.0% | |
| ! | ACTCATATCCGCAAGGGCGT+GGG | - | chr1_2:17916005-17916024 | None:intergenic | 55.0% |
| CTGTTGCGGAGGGAAAAGAG+AGG | + | chr1_2:17916607-17916626 | Msa0060260:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr1_2:17916972-17916991 | None:intergenic | 55.0% |
| TTCCCGAACCCTGCATATGC+GGG | - | chr1_2:17916988-17917007 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr1_2:17916989-17917008 | None:intergenic | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr1_2:17916988-17917007 | Msa0060260:intron | 55.0% | |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr1_2:17916989-17917008 | Msa0060260:intron | 55.0% | |
| TCTCCACCCTGACTCTCAGT+TGG | - | chr1_2:17917938-17917957 | None:intergenic | 55.0% | |
| CGCAACCTCTCCTGTGTTTC+AGG | + | chr1_2:17918114-17918133 | Msa0060260:CDS | 55.0% | |
| CAAGGCCTGAAACACAGGAG+AGG | - | chr1_2:17918122-17918141 | None:intergenic | 55.0% | |
| GTATCTCAGAAGGGCTGTGC+AGG | - | chr1_2:17918209-17918228 | None:intergenic | 55.0% | |
| AAGCACAGGCTGGCATTGCT+TGG | + | chr1_2:17918262-17918281 | Msa0060260:CDS | 55.0% | |
| GAGTTGTACCCACGCCCTTG+CGG | + | chr1_2:17915858-17915877 | Msa0060260:intron | 60.0% | |
| AGTTGTACCCACGCCCTTGC+GGG | + | chr1_2:17915859-17915878 | Msa0060260:intron | 60.0% | |
| GCCTCGAAGCCCAACTCAGT+TGG | - | chr1_2:17915904-17915923 | None:intergenic | 60.0% | |
| GTTGGGCTTCGAGGCTGACT+AGG | + | chr1_2:17915909-17915928 | Msa0060260:intron | 60.0% | |
| TGGGCTTCGAGGCTGACTAG+GGG | + | chr1_2:17915911-17915930 | Msa0060260:intron | 60.0% | |
| GGCTGACTAGGGGTCAAGAC+AGG | + | chr1_2:17915921-17915940 | Msa0060260:intron | 60.0% | |
| GAGCTATACCCACGCCCTTG+CGG | + | chr1_2:17915994-17916013 | Msa0060260:intron | 60.0% | |
| GACTCATATCCGCAAGGGCG+TGG | - | chr1_2:17916006-17916025 | None:intergenic | 60.0% | |
| ATGGCTATCCCCTGCTGCCT+GGG | - | chr1_2:17916871-17916890 | None:intergenic | 60.0% | |
| TATGGCTATCCCCTGCTGCC+TGG | - | chr1_2:17916872-17916891 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr1_2:17916971-17916990 | None:intergenic | 60.0% |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr1_2:17916982-17917001 | Msa0060260:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr1_2:17916983-17917002 | Msa0060260:intron | 60.0% | |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr1_2:17916987-17917006 | Msa0060260:intron | 60.0% | |
| CCTCGACCCTTAGTCAGCCC+CGG | - | chr1_2:17915796-17915815 | None:intergenic | 65.0% | |
| TGGCTATCCCCTGCTGCCTG+GGG | - | chr1_2:17916870-17916889 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_2:17917002-17917021 | Msa0060260:intron | 65.0% | |
| CCGGGGCTGACTAAGGGTCG+AGG | + | chr1_2:17915793-17915812 | Msa0060260:intron | 70.0% | |
| TCTCCCTTGCCCCAGGCAGC+AGG | + | chr1_2:17916858-17916877 | Msa0060260:intron | 70.0% | |
| CTCCCTTGCCCCAGGCAGCA+GGG | + | chr1_2:17916859-17916878 | Msa0060260:intron | 70.0% | |
| TCCCTTGCCCCAGGCAGCAG+GGG | + | chr1_2:17916860-17916879 | Msa0060260:intron | 70.0% | |
| TCCCCTGCTGCCTGGGGCAA+GGG | - | chr1_2:17916864-17916883 | None:intergenic | 70.0% | |
| ATCCCCTGCTGCCTGGGGCA+AGG | - | chr1_2:17916865-17916884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 17914720 | 17918762 | 17914720 | ID=Msa0060260;Name=Msa0060260 |
| chr1_2 | mRNA | 17914720 | 17918762 | 17914720 | ID=Msa0060260-mRNA-1;Parent=Msa0060260;Name=Msa0060260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=186|1|1|1|1|1|4|213|328 |
| chr1_2 | exon | 17914720 | 17915018 | 17914720 | ID=Msa0060260-mRNA-1:exon:6961;Parent=Msa0060260-mRNA-1 |
| chr1_2 | exon | 17915101 | 17915258 | 17915101 | ID=Msa0060260-mRNA-1:exon:6962;Parent=Msa0060260-mRNA-1 |
| chr1_2 | exon | 17917571 | 17917686 | 17917571 | ID=Msa0060260-mRNA-1:exon:6963;Parent=Msa0060260-mRNA-1 |
| chr1_2 | exon | 17917950 | 17918762 | 17917950 | ID=Msa0060260-mRNA-1:exon:6964;Parent=Msa0060260-mRNA-1 |
| chr1_2 | five_prime_UTR | 17914720 | 17914905 | 17914720 | ID=Msa0060260-mRNA-1:five_prime_utr;Parent=Msa0060260-mRNA-1 |
| chr1_2 | CDS | 17914906 | 17915018 | 17914906 | ID=Msa0060260-mRNA-1:cds;Parent=Msa0060260-mRNA-1 |
| chr1_2 | CDS | 17915101 | 17915258 | 17915101 | ID=Msa0060260-mRNA-1:cds;Parent=Msa0060260-mRNA-1 |
| chr1_2 | CDS | 17917571 | 17917686 | 17917571 | ID=Msa0060260-mRNA-1:cds;Parent=Msa0060260-mRNA-1 |
| chr1_2 | CDS | 17917950 | 17918549 | 17917950 | ID=Msa0060260-mRNA-1:cds;Parent=Msa0060260-mRNA-1 |
| chr1_2 | three_prime_UTR | 17918550 | 17918762 | 17918550 | ID=Msa0060260-mRNA-1:three_prime_utr;Parent=Msa0060260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
