Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0061430 | A0A072VFR2 | 91.935 | 124 | 9 | 1 | 1 | 124 | 1 | 123 | 1.17e-74 | 227 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0061430 | Msa0927120 | 0.800233 | 1.586408e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0061430 | MtrunA17_Chr1g0161551 | 91.667 | 84 | 6 | 1 | 1 | 84 | 1 | 83 | 1.39e-49 | 153 |
Msa0061430 | MtrunA17_Chr6g0479181 | 40.708 | 113 | 63 | 2 | 9 | 121 | 53 | 161 | 2.78e-22 | 86.7 |
Msa0061430 | MtrunA17_Chr5g0413201 | 31.746 | 126 | 68 | 3 | 9 | 119 | 48 | 170 | 6.63e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0061430 | AT1G14760.2 | 42.857 | 105 | 49 | 4 | 22 | 119 | 32 | 132 | 9.40e-19 | 76.6 |
Msa0061430 | AT1G70510.1 | 35.922 | 103 | 58 | 2 | 22 | 119 | 68 | 167 | 1.49e-11 | 60.1 |
Msa0061430 | AT1G23380.1 | 34.951 | 103 | 59 | 2 | 22 | 119 | 84 | 183 | 5.76e-11 | 58.5 |
Find 19 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGATGGAGGGTAAAGAAAT+TGG | 0.288718 | 1_2:+19687152 | None:intergenic |
GTTTGGACTAGTTGTTGTTT+TGG | 0.322855 | 1_2:-19687839 | None:intergenic |
TGATCAAGCTCTGGATTGTT+TGG | 0.325293 | 1_2:-19687856 | None:intergenic |
CCATCCTTTGTTTGAAGCAT+TGG | 0.359729 | 1_2:+19687241 | Msa0061430:CDS |
TCCAGAGCTTGATCACTTCA+TGG | 0.417924 | 1_2:+19687864 | Msa0061430:CDS |
AAGTGATGCATGGAAGAAAT+TGG | 0.438853 | 1_2:+19687804 | Msa0061430:CDS |
GTCTCACATCAATTGTTTGA+AGG | 0.470627 | 1_2:+19687268 | Msa0061430:CDS |
TATATTCAACTGCAGGAACT+TGG | 0.501461 | 1_2:+19689093 | Msa0061430:CDS |
GTTCATCAATCACGTCTTTG+AGG | 0.505826 | 1_2:-19689035 | None:intergenic |
ACCATGAAGTGATCAAGCTC+TGG | 0.518397 | 1_2:-19687865 | None:intergenic |
AAAAGAAAGTGAAAATGAAG+AGG | 0.568561 | 1_2:+19687196 | Msa0061430:CDS |
CCAATGCTTCAAACAAAGGA+TGG | 0.572089 | 1_2:-19687241 | None:intergenic |
TTGATATAACAAGTGATGCA+TGG | 0.576358 | 1_2:+19687794 | Msa0061430:CDS |
GGAAAGGGAAGTGATGATGT+AGG | 0.576930 | 1_2:+19687173 | Msa0061430:CDS |
TGCTACGTATATTCAACTGC+AGG | 0.578517 | 1_2:+19689086 | Msa0061430:CDS |
TCAACCAATGCTTCAAACAA+AGG | 0.579326 | 1_2:-19687245 | None:intergenic |
GAGGGTAAAGAAATTGGAAA+GGG | 0.582588 | 1_2:+19687158 | Msa0061430:CDS |
GGAGGGTAAAGAAATTGGAA+AGG | 0.606364 | 1_2:+19687157 | Msa0061430:CDS |
TATTTCTTAGGTCGGATCTG+AGG | 0.611391 | 1_2:+19687759 | Msa0061430:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATATAGTGTATAATTA+TGG | + | chr1_2:19687415-19687434 | Msa0061430:intron | 10.0% |
!! | ATATTAATATATACACAAAA+AGG | + | chr1_2:19687492-19687511 | Msa0061430:intron | 10.0% |
!! | TATTAATATATACACAAAAA+GGG | + | chr1_2:19687493-19687512 | Msa0061430:intron | 10.0% |
!! | ATAGATATATAAATTCTTTA+CGG | + | chr1_2:19688069-19688088 | Msa0061430:intron | 10.0% |
!! | AAATAATAATCTATAAAAGA+TGG | - | chr1_2:19688607-19688626 | None:intergenic | 10.0% |
!! | AAATAATAATCTATAAAAGA+TGG | - | chr1_2:19688607-19688626 | None:intergenic | 10.0% |
!! | AATAATATAGTGTATAATTA+TGG | + | chr1_2:19687415-19687434 | Msa0061430:intron | 10.0% |
!! | ATATTAATATATACACAAAA+AGG | + | chr1_2:19687492-19687511 | Msa0061430:intron | 10.0% |
!! | TATTAATATATACACAAAAA+GGG | + | chr1_2:19687493-19687512 | Msa0061430:intron | 10.0% |
!! | ATAGATATATAAATTCTTTA+CGG | + | chr1_2:19688069-19688088 | Msa0061430:intron | 10.0% |
!! | AAATAATAATCTATAAAAGA+TGG | - | chr1_2:19688607-19688626 | None:intergenic | 10.0% |
!! | AAATAATAATCTATAAAAGA+TGG | - | chr1_2:19688607-19688626 | None:intergenic | 10.0% |
!! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_2:19687314-19687333 | Msa0061430:intron | 15.0% |
!! | GTATTACATACATTAATTAA+TGG | + | chr1_2:19687886-19687905 | Msa0061430:intron | 15.0% |
!!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_2:19688106-19688125 | None:intergenic | 15.0% |
!!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_2:19688112-19688131 | Msa0061430:intron | 15.0% |
!! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_2:19687314-19687333 | Msa0061430:intron | 15.0% |
!! | GTATTACATACATTAATTAA+TGG | + | chr1_2:19687886-19687905 | Msa0061430:intron | 15.0% |
!!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_2:19688106-19688125 | None:intergenic | 15.0% |
!!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_2:19688112-19688131 | Msa0061430:intron | 15.0% |
!! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_2:19687429-19687448 | Msa0061430:intron | 20.0% |
!!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_2:19687675-19687694 | Msa0061430:intron | 20.0% |
!!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_2:19687687-19687706 | Msa0061430:intron | 20.0% |
!!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_2:19688097-19688116 | None:intergenic | 20.0% |
!! | AAAATAATAGAGAGAGAAAA+AGG | - | chr1_2:19688239-19688258 | None:intergenic | 20.0% |
!! | AATCATATTATATGTGAACT+AGG | - | chr1_2:19688974-19688993 | None:intergenic | 20.0% |
!! | TATGATTCATTTATGTACAT+AGG | + | chr1_2:19688987-19689006 | Msa0061430:intron | 20.0% |
!! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_2:19687429-19687448 | Msa0061430:intron | 20.0% |
!!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_2:19687675-19687694 | Msa0061430:intron | 20.0% |
!!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_2:19687687-19687706 | Msa0061430:intron | 20.0% |
!!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_2:19688097-19688116 | None:intergenic | 20.0% |
!! | AAAATAATAGAGAGAGAAAA+AGG | - | chr1_2:19688239-19688258 | None:intergenic | 20.0% |
!! | AATCATATTATATGTGAACT+AGG | - | chr1_2:19688974-19688993 | None:intergenic | 20.0% |
!! | TATGATTCATTTATGTACAT+AGG | + | chr1_2:19688987-19689006 | Msa0061430:intron | 20.0% |
! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_2:19687196-19687215 | Msa0061430:CDS | 25.0% |
! | TAATTTCATTCCATACATGT+TGG | - | chr1_2:19687719-19687738 | None:intergenic | 25.0% |
!! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_2:19687747-19687766 | Msa0061430:intron | 25.0% |
! | CATACATTAATTAATGGTCA+TGG | + | chr1_2:19687892-19687911 | Msa0061430:intron | 25.0% |
!! | AATCAAATTTGTTCACTCAA+TGG | + | chr1_2:19687977-19687996 | Msa0061430:intron | 25.0% |
! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_2:19688025-19688044 | Msa0061430:intron | 25.0% |
! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_2:19688290-19688309 | Msa0061430:intron | 25.0% |
!!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_2:19688359-19688378 | None:intergenic | 25.0% |
! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_2:19688384-19688403 | None:intergenic | 25.0% |
!!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_2:19688868-19688887 | Msa0061430:intron | 25.0% |
! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_2:19687196-19687215 | Msa0061430:CDS | 25.0% |
! | TAATTTCATTCCATACATGT+TGG | - | chr1_2:19687719-19687738 | None:intergenic | 25.0% |
!! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_2:19687747-19687766 | Msa0061430:intron | 25.0% |
! | CATACATTAATTAATGGTCA+TGG | + | chr1_2:19687892-19687911 | Msa0061430:intron | 25.0% |
!! | AATCAAATTTGTTCACTCAA+TGG | + | chr1_2:19687977-19687996 | Msa0061430:intron | 25.0% |
! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_2:19688025-19688044 | Msa0061430:intron | 25.0% |
! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_2:19688290-19688309 | Msa0061430:intron | 25.0% |
!!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_2:19688359-19688378 | None:intergenic | 25.0% |
! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_2:19688384-19688403 | None:intergenic | 25.0% |
!!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_2:19688868-19688887 | Msa0061430:intron | 25.0% |
TGTAAGTAATGTATTCCTCA+TGG | - | chr1_2:19687465-19687484 | None:intergenic | 30.0% | |
AGGGTAAAAAAGACAACAAA+AGG | + | chr1_2:19687512-19687531 | Msa0061430:intron | 30.0% | |
GGGTAAAAAAGACAACAAAA+GGG | + | chr1_2:19687513-19687532 | Msa0061430:intron | 30.0% | |
AAGGATATATCCAACATGTA+TGG | + | chr1_2:19687706-19687725 | Msa0061430:intron | 30.0% | |
! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_2:19687751-19687770 | Msa0061430:intron | 30.0% |
TTGATATAACAAGTGATGCA+TGG | + | chr1_2:19687794-19687813 | Msa0061430:CDS | 30.0% | |
GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_2:19688172-19688191 | None:intergenic | 30.0% | |
! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_2:19689060-19689079 | None:intergenic | 30.0% |
TGTAAGTAATGTATTCCTCA+TGG | - | chr1_2:19687465-19687484 | None:intergenic | 30.0% | |
AGGGTAAAAAAGACAACAAA+AGG | + | chr1_2:19687512-19687531 | Msa0061430:intron | 30.0% | |
GGGTAAAAAAGACAACAAAA+GGG | + | chr1_2:19687513-19687532 | Msa0061430:intron | 30.0% | |
AAGGATATATCCAACATGTA+TGG | + | chr1_2:19687706-19687725 | Msa0061430:intron | 30.0% | |
! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_2:19687751-19687770 | Msa0061430:intron | 30.0% |
TTGATATAACAAGTGATGCA+TGG | + | chr1_2:19687794-19687813 | Msa0061430:CDS | 30.0% | |
GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_2:19688172-19688191 | None:intergenic | 30.0% | |
! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_2:19689060-19689079 | None:intergenic | 30.0% |
GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_2:19687158-19687177 | Msa0061430:CDS | 35.0% | |
TCAACCAATGCTTCAAACAA+AGG | - | chr1_2:19687248-19687267 | None:intergenic | 35.0% | |
GTCTCACATCAATTGTTTGA+AGG | + | chr1_2:19687268-19687287 | Msa0061430:CDS | 35.0% | |
AGATCCGACCTAAGAAATAA+AGG | - | chr1_2:19687758-19687777 | None:intergenic | 35.0% | |
AAGTGATGCATGGAAGAAAT+TGG | + | chr1_2:19687804-19687823 | Msa0061430:CDS | 35.0% | |
!!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_2:19687842-19687861 | None:intergenic | 35.0% |
!!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_2:19689002-19689021 | Msa0061430:intron | 35.0% |
TATATTCAACTGCAGGAACT+TGG | + | chr1_2:19689093-19689112 | Msa0061430:CDS | 35.0% | |
GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_2:19687158-19687177 | Msa0061430:CDS | 35.0% | |
TCAACCAATGCTTCAAACAA+AGG | - | chr1_2:19687248-19687267 | None:intergenic | 35.0% | |
GTCTCACATCAATTGTTTGA+AGG | + | chr1_2:19687268-19687287 | Msa0061430:CDS | 35.0% | |
AGATCCGACCTAAGAAATAA+AGG | - | chr1_2:19687758-19687777 | None:intergenic | 35.0% | |
AAGTGATGCATGGAAGAAAT+TGG | + | chr1_2:19687804-19687823 | Msa0061430:CDS | 35.0% | |
!!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_2:19687842-19687861 | None:intergenic | 35.0% |
!!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_2:19689002-19689021 | Msa0061430:intron | 35.0% |
TATATTCAACTGCAGGAACT+TGG | + | chr1_2:19689093-19689112 | Msa0061430:CDS | 35.0% | |
GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_2:19687157-19687176 | Msa0061430:CDS | 40.0% | |
CCAATGCTTCAAACAAAGGA+TGG | - | chr1_2:19687244-19687263 | None:intergenic | 40.0% | |
! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_2:19687241-19687260 | Msa0061430:CDS | 40.0% |
! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_2:19687436-19687455 | Msa0061430:intron | 40.0% |
TATTTCTTAGGTCGGATCTG+AGG | + | chr1_2:19687759-19687778 | Msa0061430:intron | 40.0% | |
!! | TGATCAAGCTCTGGATTGTT+TGG | - | chr1_2:19687859-19687878 | None:intergenic | 40.0% |
!! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_2:19688422-19688441 | None:intergenic | 40.0% |
AATACGTTGTGACGTACGTA+TGG | - | chr1_2:19688435-19688454 | None:intergenic | 40.0% | |
AATACGTTGTGACGTACGTA+TGG | - | chr1_2:19688435-19688454 | None:intergenic | 40.0% | |
GTTCATCAATCACGTCTTTG+AGG | - | chr1_2:19689038-19689057 | None:intergenic | 40.0% | |
TGCTACGTATATTCAACTGC+AGG | + | chr1_2:19689086-19689105 | Msa0061430:CDS | 40.0% | |
GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_2:19687157-19687176 | Msa0061430:CDS | 40.0% | |
CCAATGCTTCAAACAAAGGA+TGG | - | chr1_2:19687244-19687263 | None:intergenic | 40.0% | |
! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_2:19687241-19687260 | Msa0061430:CDS | 40.0% |
! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_2:19687436-19687455 | Msa0061430:intron | 40.0% |
TATTTCTTAGGTCGGATCTG+AGG | + | chr1_2:19687759-19687778 | Msa0061430:intron | 40.0% | |
!! | TGATCAAGCTCTGGATTGTT+TGG | - | chr1_2:19687859-19687878 | None:intergenic | 40.0% |
!! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_2:19688422-19688441 | None:intergenic | 40.0% |
AATACGTTGTGACGTACGTA+TGG | - | chr1_2:19688435-19688454 | None:intergenic | 40.0% | |
AATACGTTGTGACGTACGTA+TGG | - | chr1_2:19688435-19688454 | None:intergenic | 40.0% | |
GTTCATCAATCACGTCTTTG+AGG | - | chr1_2:19689038-19689057 | None:intergenic | 40.0% | |
TGCTACGTATATTCAACTGC+AGG | + | chr1_2:19689086-19689105 | Msa0061430:CDS | 40.0% | |
! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_2:19687173-19687192 | Msa0061430:CDS | 45.0% |
TCCAGAGCTTGATCACTTCA+TGG | + | chr1_2:19687864-19687883 | Msa0061430:CDS | 45.0% | |
ACCATGAAGTGATCAAGCTC+TGG | - | chr1_2:19687868-19687887 | None:intergenic | 45.0% | |
!! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_2:19688415-19688434 | None:intergenic | 45.0% |
!! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_2:19688416-19688435 | None:intergenic | 45.0% |
!! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_2:19688423-19688442 | None:intergenic | 45.0% |
! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_2:19687173-19687192 | Msa0061430:CDS | 45.0% |
TCCAGAGCTTGATCACTTCA+TGG | + | chr1_2:19687864-19687883 | Msa0061430:CDS | 45.0% | |
ACCATGAAGTGATCAAGCTC+TGG | - | chr1_2:19687868-19687887 | None:intergenic | 45.0% | |
!! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_2:19688415-19688434 | None:intergenic | 45.0% |
!! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_2:19688416-19688435 | None:intergenic | 45.0% |
!! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_2:19688423-19688442 | None:intergenic | 45.0% |
TGTATTCCTCATGGTGACCG+TGG | - | chr1_2:19687456-19687475 | None:intergenic | 50.0% | |
! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_2:19688410-19688429 | None:intergenic | 50.0% |
! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_2:19688656-19688675 | None:intergenic | 50.0% |
TGTATTCCTCATGGTGACCG+TGG | - | chr1_2:19687456-19687475 | None:intergenic | 50.0% | |
! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_2:19688410-19688429 | None:intergenic | 50.0% |
! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_2:19688656-19688675 | None:intergenic | 50.0% |
TTAGGACCACGGTCACCATG+AGG | + | chr1_2:19687447-19687466 | Msa0061430:intron | 55.0% | |
TTAGGACCACGGTCACCATG+AGG | + | chr1_2:19687447-19687466 | Msa0061430:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 19687155 | 19689131 | 19687155 | ID=Msa0061430;Name=Msa0061430 |
chr1_2 | mRNA | 19687155 | 19689131 | 19687155 | ID=Msa0061430-mRNA-1;Parent=Msa0061430;Name=Msa0061430-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|124 |
chr1_2 | exon | 19687155 | 19687289 | 19687155 | ID=Msa0061430-mRNA-1:exon:7575;Parent=Msa0061430-mRNA-1 |
chr1_2 | exon | 19687769 | 19687885 | 19687769 | ID=Msa0061430-mRNA-1:exon:7576;Parent=Msa0061430-mRNA-1 |
chr1_2 | exon | 19689009 | 19689131 | 19689009 | ID=Msa0061430-mRNA-1:exon:7577;Parent=Msa0061430-mRNA-1 |
chr1_2 | CDS | 19687155 | 19687289 | 19687155 | ID=Msa0061430-mRNA-1:cds;Parent=Msa0061430-mRNA-1 |
chr1_2 | CDS | 19687769 | 19687885 | 19687769 | ID=Msa0061430-mRNA-1:cds;Parent=Msa0061430-mRNA-1 |
chr1_2 | CDS | 19689009 | 19689131 | 19689009 | ID=Msa0061430-mRNA-1:cds;Parent=Msa0061430-mRNA-1 |
Gene Sequence |
Protein sequence |