Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927120 | XP_003620607.2 | 97.159 | 528 | 13 | 2 | 1 | 526 | 22 | 549 | 0.0 | 1052 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927120 | sp|Q9SVQ3|ROGF9_ARATH | 62.876 | 466 | 156 | 6 | 65 | 526 | 65 | 517 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061430 | Msa0927120 | 0.800233 | 1.586408e-48 | -8.615850e-47 |
| Msa0104500 | Msa0927120 | 0.803281 | 3.756918e-49 | -8.615850e-47 |
| Msa0667810 | Msa0927120 | 0.801864 | 7.363163e-49 | -8.615850e-47 |
| Msa0669840 | Msa0927120 | 0.828561 | 8.397998e-55 | -8.615850e-47 |
| Msa0725860 | Msa0927120 | 0.855433 | 6.329098e-62 | -8.615850e-47 |
| Msa0739480 | Msa0927120 | 0.831793 | 1.364497e-55 | -8.615850e-47 |
| Msa0786040 | Msa0927120 | 0.838470 | 2.820883e-57 | -8.615850e-47 |
| Msa0823400 | Msa0927120 | 0.807662 | 4.530597e-50 | -8.615850e-47 |
| Msa0124130 | Msa0927120 | 0.825440 | 4.681560e-54 | -8.615850e-47 |
| Msa0149140 | Msa0927120 | 0.809031 | 2.313456e-50 | -8.615850e-47 |
| Msa0152500 | Msa0927120 | 0.808354 | 3.227355e-50 | -8.615850e-47 |
| Msa0373960 | Msa0927120 | 0.840593 | 7.918119e-58 | -8.615850e-47 |
| Msa0406000 | Msa0927120 | 0.834799 | 2.432591e-56 | -8.615850e-47 |
| Msa0423100 | Msa0927120 | 0.825980 | 3.487050e-54 | -8.615850e-47 |
| Msa0424330 | Msa0927120 | 0.806035 | 1.000348e-49 | -8.615850e-47 |
| Msa0424340 | Msa0927120 | 0.840706 | 7.396257e-58 | -8.615850e-47 |
| Msa0424350 | Msa0927120 | 0.818224 | 2.191976e-52 | -8.615850e-47 |
| Msa0441590 | Msa0927120 | 0.801868 | 7.349317e-49 | -8.615850e-47 |
| Msa0451400 | Msa0927120 | 0.831115 | 2.003859e-55 | -8.615850e-47 |
| Msa0252630 | Msa0927120 | 0.809599 | 1.747205e-50 | -8.615850e-47 |
| Msa0291330 | Msa0927120 | 0.826948 | 2.050191e-54 | -8.615850e-47 |
| Msa0322860 | Msa0927120 | 0.800941 | 1.138131e-48 | -8.615850e-47 |
| Msa0329460 | Msa0927120 | 0.825662 | 4.148860e-54 | -8.615850e-47 |
| Msa0351770 | Msa0927120 | 0.852669 | 3.966810e-61 | -8.615850e-47 |
| Msa0359250 | Msa0927120 | 0.821412 | 4.093843e-53 | -8.615850e-47 |
| Msa0492190 | Msa0927120 | 0.821597 | 3.709480e-53 | -8.615850e-47 |
| Msa0515950 | Msa0927120 | 0.809638 | 1.714141e-50 | -8.615850e-47 |
| Msa0534930 | Msa0927120 | 0.814509 | 1.485821e-51 | -8.615850e-47 |
| Msa0591790 | Msa0927120 | 0.822072 | 2.879942e-53 | -8.615850e-47 |
| Msa0591800 | Msa0927120 | 0.847629 | 1.024451e-59 | -8.615850e-47 |
| Msa0845940 | Msa0927120 | 0.815823 | 7.589853e-52 | -8.615850e-47 |
| Msa0860170 | Msa0927120 | 0.806225 | 9.120733e-50 | -8.615850e-47 |
| Msa0899950 | Msa0927120 | 0.905833 | 2.824091e-80 | -8.615850e-47 |
| Msa0927120 | Msa0929870 | 0.824926 | 6.192671e-54 | -8.615850e-47 |
| Msa0927120 | Msa0941820 | 0.801552 | 8.533896e-49 | -8.615850e-47 |
| Msa0927120 | Msa0961560 | 0.805376 | 1.375394e-49 | -8.615850e-47 |
| Msa0927120 | Msa0965310 | 0.899864 | 1.299086e-77 | -8.615850e-47 |
| Msa0927120 | Msa0996270 | 0.811229 | 7.772765e-51 | -8.615850e-47 |
| Msa0927120 | Msa0999300 | 0.820810 | 5.634892e-53 | -8.615850e-47 |
| Msa0927120 | Msa0999340 | 0.842306 | 2.803310e-58 | -8.615850e-47 |
| Msa0927120 | Msa0999350 | 0.828727 | 7.656908e-55 | -8.615850e-47 |
| Msa0927120 | Msa0999360 | 0.820133 | 8.058920e-53 | -8.615850e-47 |
| Msa0927120 | Msa0999390 | 0.835696 | 1.443697e-56 | -8.615850e-47 |
| Msa0927120 | Msa0999400 | 0.817784 | 2.754988e-52 | -8.615850e-47 |
| Msa0927120 | Msa0999410 | 0.824749 | 6.820103e-54 | -8.615850e-47 |
| Msa0927120 | Msa0999700 | 0.895856 | 6.437979e-76 | -8.615850e-47 |
| Msa0927120 | Msa1084520 | 0.820021 | 8.548565e-53 | -8.615850e-47 |
| Msa0927120 | Msa1100140 | 0.817938 | 2.543186e-52 | -8.615850e-47 |
| Msa0927120 | Msa1145020 | 0.806469 | 8.103103e-50 | -8.615850e-47 |
| Msa0927120 | Msa1171310 | 0.804353 | 2.249736e-49 | -8.615850e-47 |
| Msa0927120 | Msa1177400 | 0.825902 | 3.639242e-54 | -8.615850e-47 |
| Msa0927120 | Msa1201110 | 0.805491 | 1.301383e-49 | -8.615850e-47 |
| Msa0927120 | Msa1201160 | 0.830668 | 2.580441e-55 | -8.615850e-47 |
| Msa0927120 | Msa1228190 | 0.836765 | 7.726418e-57 | -8.615850e-47 |
| Msa0927120 | Msa1271260 | 0.833956 | 3.958543e-56 | -8.615850e-47 |
| Msa0927120 | Msa1294290 | 0.843483 | 1.363017e-58 | -8.615850e-47 |
| Msa0927120 | Msa1389050 | 0.925190 | 2.566129e-90 | -8.615850e-47 |
| Msa0927120 | Msa1435480 | 0.813356 | 2.668611e-51 | -8.615850e-47 |
| Msa0927120 | Msa1458910 | 0.810583 | 1.072427e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927120 | MtrunA17_Chr6g0485861 | 97.159 | 528 | 13 | 2 | 1 | 526 | 22 | 549 | 0.0 | 1052 |
| Msa0927120 | MtrunA17_Chr2g0331631 | 59.811 | 530 | 180 | 10 | 6 | 526 | 28 | 533 | 0.0 | 578 |
| Msa0927120 | MtrunA17_Chr4g0004771 | 64.425 | 461 | 146 | 9 | 74 | 526 | 90 | 540 | 0.0 | 572 |
| Msa0927120 | MtrunA17_Chr7g0240501 | 55.108 | 372 | 146 | 4 | 73 | 424 | 183 | 553 | 2.24e-142 | 425 |
| Msa0927120 | MtrunA17_Chr4g0008771 | 54.447 | 371 | 153 | 4 | 69 | 424 | 91 | 460 | 1.53e-135 | 403 |
| Msa0927120 | MtrunA17_Chr4g0038651 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 1.12e-131 | 394 |
| Msa0927120 | MtrunA17_Chr3g0112731 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 3.61e-130 | 391 |
| Msa0927120 | MtrunA17_Chr5g0436141 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 6.20e-130 | 390 |
| Msa0927120 | MtrunA17_Chr8g0348921 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 4.39e-119 | 358 |
| Msa0927120 | MtrunA17_Chr7g0247761 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.61e-109 | 336 |
| Msa0927120 | MtrunA17_Chr5g0408591 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 5.89e-98 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927120 | AT4G13240.1 | 62.876 | 466 | 156 | 6 | 65 | 526 | 65 | 517 | 0.0 | 577 |
| Msa0927120 | AT3G24620.1 | 65.487 | 452 | 140 | 6 | 76 | 526 | 87 | 523 | 0.0 | 575 |
| Msa0927120 | AT1G52240.1 | 62.031 | 453 | 150 | 7 | 78 | 526 | 108 | 542 | 0.0 | 540 |
| Msa0927120 | AT1G79860.1 | 62.719 | 456 | 127 | 11 | 78 | 526 | 96 | 515 | 0.0 | 540 |
| Msa0927120 | AT5G19560.1 | 57.451 | 463 | 176 | 7 | 73 | 526 | 43 | 493 | 1.67e-175 | 504 |
| Msa0927120 | AT5G19560.5 | 57.451 | 463 | 176 | 7 | 73 | 526 | 43 | 493 | 1.67e-175 | 504 |
| Msa0927120 | AT5G19560.4 | 57.451 | 463 | 176 | 7 | 73 | 526 | 62 | 512 | 5.86e-175 | 503 |
| Msa0927120 | AT3G16130.1 | 51.544 | 518 | 212 | 11 | 19 | 524 | 44 | 534 | 3.47e-165 | 479 |
| Msa0927120 | AT5G19560.2 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 2.09e-148 | 431 |
| Msa0927120 | AT5G02010.1 | 49.038 | 416 | 187 | 7 | 73 | 464 | 69 | 483 | 7.33e-138 | 410 |
| Msa0927120 | AT4G38430.1 | 51.000 | 400 | 172 | 6 | 73 | 449 | 89 | 487 | 3.45e-135 | 403 |
| Msa0927120 | AT5G19560.3 | 55.256 | 371 | 145 | 7 | 165 | 526 | 5 | 363 | 9.86e-129 | 380 |
| Msa0927120 | AT5G05940.1 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 2.21e-128 | 387 |
| Msa0927120 | AT4G00460.2 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.85e-122 | 366 |
| Msa0927120 | AT4G00460.4 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.85e-122 | 366 |
| Msa0927120 | AT3G55660.1 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.15e-118 | 361 |
| Msa0927120 | AT1G01700.1 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 3.03e-117 | 355 |
| Msa0927120 | AT2G45890.1 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.83e-114 | 346 |
| Msa0927120 | AT1G01700.4 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 9.75e-111 | 339 |
| Msa0927120 | AT5G05940.2 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 4.94e-110 | 336 |
| Msa0927120 | AT3G55660.2 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 2.80e-103 | 317 |
| Msa0927120 | AT4G00460.3 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 1.49e-101 | 309 |
| Msa0927120 | AT1G31650.2 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.49e-96 | 303 |
| Msa0927120 | AT1G01700.3 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.47e-96 | 300 |
| Msa0927120 | AT1G31650.1 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.14e-96 | 303 |
| Msa0927120 | AT4G00460.1 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.32e-73 | 236 |
| Msa0927120 | AT1G01700.5 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.06e-71 | 231 |
| Msa0927120 | AT1G01700.2 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.06e-71 | 231 |
Find 106 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.097808 | 6_2:-71249903 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | 6_2:-71249921 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | 6_2:+71250279 | Msa0927120:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | 6_2:+71249749 | Msa0927120:CDS |
| TTTATCCCATCCTCAGAGTT+TGG | 0.309562 | 6_2:-71251076 | None:intergenic |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | 6_2:+71251129 | Msa0927120:CDS |
| ACTCTGAGGATGGGATAAAA+AGG | 0.344538 | 6_2:+71251080 | Msa0927120:CDS |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | 6_2:+71248505 | Msa0927120:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | 6_2:-71247977 | None:intergenic |
| AATGTAAATATAGGACATTT+TGG | 0.362227 | 6_2:+71249720 | Msa0927120:intron |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | 6_2:+71249579 | Msa0927120:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | 6_2:+71247796 | Msa0927120:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | 6_2:-71247914 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | 6_2:-71248584 | None:intergenic |
| TTGTTATCACCTTGTTGTAT+TGG | 0.402712 | 6_2:-71250457 | None:intergenic |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | 6_2:-71251010 | None:intergenic |
| TACTGTCGAATACTTTGATC+CGG | 0.430432 | 6_2:+71250193 | Msa0927120:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | 6_2:+71248480 | Msa0927120:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | 6_2:+71250322 | Msa0927120:CDS |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.433426 | 6_2:+71249847 | Msa0927120:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.436869 | 6_2:-71249844 | None:intergenic |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | 6_2:-71248994 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | 6_2:+71250315 | Msa0927120:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | 6_2:-71249109 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | 6_2:+71247809 | Msa0927120:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | 6_2:+71250928 | Msa0927120:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | 6_2:+71250401 | Msa0927120:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | 6_2:+71248580 | Msa0927120:CDS |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | 6_2:-71250419 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | 6_2:+71248549 | Msa0927120:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | 6_2:+71250255 | Msa0927120:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | 6_2:+71248532 | Msa0927120:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | 6_2:+71250285 | Msa0927120:CDS |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.472291 | 6_2:-71249598 | None:intergenic |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | 6_2:+71247899 | Msa0927120:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | 6_2:-71250912 | None:intergenic |
| TGTCAGATGTAGCTGTGAAA+TGG | 0.477439 | 6_2:+71249872 | Msa0927120:CDS |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | 6_2:+71251155 | Msa0927120:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | 6_2:+71247971 | Msa0927120:CDS |
| GGAGATGTTTGCTCCGCCAC+TGG | 0.480502 | 6_2:-71251055 | None:intergenic |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | 6_2:-71251301 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | 6_2:-71249938 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | 6_2:+71251142 | Msa0927120:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | 6_2:-71249979 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | 6_2:-71247785 | None:intergenic |
| CTCGTTGGATTCTTTGCCAG+TGG | 0.494386 | 6_2:+71251039 | Msa0927120:CDS |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | 6_2:+71251169 | Msa0927120:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | 6_2:+71249019 | Msa0927120:CDS |
| ACATCTCCAAACTCTGAGGA+TGG | 0.512589 | 6_2:+71251070 | Msa0927120:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | 6_2:-71247974 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | 6_2:+71250302 | Msa0927120:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | 6_2:-71251030 | None:intergenic |
| CATCGCATCAAGCTTGCGCA+AGG | 0.528390 | 6_2:-71249602 | None:intergenic |
| AATTCAGCATGCAGAAATCA+AGG | 0.528944 | 6_2:+71247732 | None:intergenic |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | 6_2:-71250243 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | 6_2:+71251134 | Msa0927120:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | 6_2:+71249815 | Msa0927120:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | 6_2:-71247899 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | 6_2:-71249078 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | 6_2:+71247782 | Msa0927120:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | 6_2:+71248526 | Msa0927120:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | 6_2:+71250343 | Msa0927120:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | 6_2:+71251011 | Msa0927120:CDS |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | 6_2:+71248989 | Msa0927120:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | 6_2:+71248520 | Msa0927120:CDS |
| GTTGGATTCTTTGCCAGTGG+CGG | 0.553356 | 6_2:+71251042 | Msa0927120:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | 6_2:-71247888 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | 6_2:+71249951 | Msa0927120:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | 6_2:-71247784 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | 6_2:+71249921 | Msa0927120:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | 6_2:+71249081 | Msa0927120:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | 6_2:+71251130 | Msa0927120:CDS |
| GCTACATCTGACAATCCTGT+TGG | 0.573819 | 6_2:-71249862 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | 6_2:+71250342 | Msa0927120:CDS |
| ACTGTCGAATACTTTGATCC+GGG | 0.577115 | 6_2:+71250194 | Msa0927120:CDS |
| ACATCTGACAATCCTGTTGG+AGG | 0.578270 | 6_2:-71249859 | None:intergenic |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | 6_2:+71249987 | Msa0927120:CDS |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | 6_2:-71250265 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | 6_2:+71250334 | Msa0927120:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | 6_2:-71251026 | None:intergenic |
| CATCTCCAAACTCTGAGGAT+GGG | 0.582463 | 6_2:+71251071 | Msa0927120:CDS |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | 6_2:+71251024 | Msa0927120:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | 6_2:+71251000 | Msa0927120:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | 6_2:+71247883 | Msa0927120:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | 6_2:+71247810 | Msa0927120:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | 6_2:-71251124 | None:intergenic |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | 6_2:-71249965 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | 6_2:-71250212 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | 6_2:+71249077 | Msa0927120:CDS |
| ACTTATAGATCGACTCGCCA+AGG | 0.607020 | 6_2:-71250166 | None:intergenic |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.607156 | 6_2:+71250149 | Msa0927120:intron |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | 6_2:+71249781 | Msa0927120:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | 6_2:+71248998 | Msa0927120:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.613743 | 6_2:+71249818 | Msa0927120:CDS |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | 6_2:+71249001 | Msa0927120:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | 6_2:+71250997 | Msa0927120:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | 6_2:+71250884 | Msa0927120:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | 6_2:+71250214 | Msa0927120:CDS |
| CAGCAAAATCCAATACAACA+AGG | 0.645091 | 6_2:+71250448 | Msa0927120:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | 6_2:+71249092 | Msa0927120:CDS |
| TTATGTAGATCATGACGACT+CGG | 0.677543 | 6_2:+71249548 | Msa0927120:intron |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | 6_2:-71250223 | None:intergenic |
| GCAAACATCTCCAAACTCTG+AGG | 0.695037 | 6_2:+71251066 | Msa0927120:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | 6_2:-71251121 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | 6_2:-71250428 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | 6_2:+71249095 | Msa0927120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATCAATTTAAAAAA+AGG | + | chr6_2:71248297-71248316 | Msa0927120:intron | 10.0% |
| !! | AAAAATAAAAACTATAACAA+AGG | + | chr6_2:71248378-71248397 | Msa0927120:intron | 10.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | + | chr6_2:71248173-71248192 | Msa0927120:intron | 15.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | + | chr6_2:71248307-71248326 | Msa0927120:intron | 15.0% |
| !!! | TTTTTTAATGAAAACAACAT+TGG | + | chr6_2:71248910-71248929 | Msa0927120:intron | 15.0% |
| !! | TATTTAATTGATGTATATCA+TGG | + | chr6_2:71249138-71249157 | Msa0927120:intron | 15.0% |
| !! | TCTTGATTACTATTAAAATT+TGG | + | chr6_2:71249683-71249702 | Msa0927120:intron | 15.0% |
| !!! | TGATTTTAATGTAAAGTTAT+TGG | - | chr6_2:71250541-71250560 | None:intergenic | 15.0% |
| !! | TTAAAATAATATCGTCTAAA+GGG | - | chr6_2:71250689-71250708 | None:intergenic | 15.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | + | chr6_2:71247796-71247815 | Msa0927120:CDS | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | - | chr6_2:71248009-71248028 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | - | chr6_2:71248010-71248029 | None:intergenic | 20.0% |
| !!! | TTAGTTCATGACTTTTAAAT+GGG | - | chr6_2:71248055-71248074 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | + | chr6_2:71248651-71248670 | Msa0927120:intron | 20.0% |
| !!! | ATCTTATTCTTGATGATATT+CGG | - | chr6_2:71249374-71249393 | None:intergenic | 20.0% |
| !! | TAAAATTTGGACTAACTTTA+TGG | + | chr6_2:71249696-71249715 | Msa0927120:intron | 20.0% |
| !!! | AATGTAAATATAGGACATTT+TGG | + | chr6_2:71249720-71249739 | Msa0927120:intron | 20.0% |
| !! | ATGAAAGAAAACAAAAACTT+AGG | - | chr6_2:71250123-71250142 | None:intergenic | 20.0% |
| !! | TACATTAAAATCACTTCTTA+CGG | + | chr6_2:71250548-71250567 | Msa0927120:intron | 20.0% |
| !! | GTTAAAATAATATCGTCTAA+AGG | - | chr6_2:71250690-71250709 | None:intergenic | 20.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | - | chr6_2:71250799-71250818 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | - | chr6_2:71251250-71251269 | None:intergenic | 20.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | - | chr6_2:71248056-71248075 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | + | chr6_2:71248183-71248202 | Msa0927120:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | + | chr6_2:71248408-71248427 | Msa0927120:intron | 25.0% |
| !! | TAAAAAAGTATATACCAGCA+AGG | - | chr6_2:71248597-71248616 | None:intergenic | 25.0% |
| !! | TTTTTACCCTCAAATCTTTA+TGG | + | chr6_2:71248611-71248630 | Msa0927120:intron | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | - | chr6_2:71248667-71248686 | None:intergenic | 25.0% |
| ! | ATTGATGTATATCATGGATT+CGG | + | chr6_2:71249144-71249163 | Msa0927120:intron | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | - | chr6_2:71249630-71249649 | None:intergenic | 25.0% |
| ! | CTTTATGGCAATGTAAATAT+AGG | + | chr6_2:71249711-71249730 | Msa0927120:intron | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | + | chr6_2:71249749-71249768 | Msa0927120:CDS | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | + | chr6_2:71250001-71250020 | Msa0927120:intron | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | - | chr6_2:71250005-71250024 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | + | chr6_2:71250002-71250021 | Msa0927120:intron | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | - | chr6_2:71250006-71250025 | None:intergenic | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | + | chr6_2:71250006-71250025 | Msa0927120:intron | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | + | chr6_2:71250279-71250298 | Msa0927120:CDS | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | + | chr6_2:71250285-71250304 | Msa0927120:CDS | 25.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | + | chr6_2:71250302-71250321 | Msa0927120:CDS | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | + | chr6_2:71250315-71250334 | Msa0927120:CDS | 25.0% |
| ! | AAATTCAGATAAAAGTGAGT+CGG | - | chr6_2:71250509-71250528 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | - | chr6_2:71250534-71250553 | None:intergenic | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | + | chr6_2:71250823-71250842 | Msa0927120:intron | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | + | chr6_2:71250970-71250989 | Msa0927120:CDS | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | + | chr6_2:71251220-71251239 | Msa0927120:CDS | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | + | chr6_2:71251246-71251265 | Msa0927120:CDS | 25.0% |
| TTTGATAAGGATCATGATGA+AGG | + | chr6_2:71247809-71247828 | Msa0927120:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | + | chr6_2:71247810-71247829 | Msa0927120:CDS | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | + | chr6_2:71247883-71247902 | Msa0927120:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | - | chr6_2:71247986-71248005 | None:intergenic | 30.0% | |
| AAAGTCATGAACTAAGATCA+TGG | + | chr6_2:71248060-71248079 | Msa0927120:intron | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | + | chr6_2:71248061-71248080 | Msa0927120:intron | 30.0% | |
| !! | TTCAGAAACTGATTTGATGA+AGG | + | chr6_2:71248480-71248499 | Msa0927120:intron | 30.0% |
| TTCCTACCATAAAGATTTGA+GGG | - | chr6_2:71248620-71248639 | None:intergenic | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | - | chr6_2:71248621-71248640 | None:intergenic | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | + | chr6_2:71248626-71248645 | Msa0927120:intron | 30.0% | |
| !! | TGACAATTACGATTTGTTGA+CGG | - | chr6_2:71248752-71248771 | None:intergenic | 30.0% |
| AACTTTAATCGTAACTTCGT+AGG | + | chr6_2:71248789-71248808 | Msa0927120:intron | 30.0% | |
| !! | TTTTGGAGAACAATCAAAGT+TGG | + | chr6_2:71248969-71248988 | Msa0927120:CDS | 30.0% |
| ! | ATCTTGAAATTTGAAGTCGT+GGG | - | chr6_2:71249484-71249503 | None:intergenic | 30.0% |
| ! | AACTACATTTTTGCCCTATT+TGG | + | chr6_2:71249637-71249656 | Msa0927120:intron | 30.0% |
| TTAAGCTGCATATCCAAATA+GGG | - | chr6_2:71249653-71249672 | None:intergenic | 30.0% | |
| ! | TTGTTATCACCTTGTTGTAT+TGG | - | chr6_2:71250460-71250479 | None:intergenic | 30.0% |
| ATACATCGTTTAGTTGAGTA+TGG | + | chr6_2:71250623-71250642 | Msa0927120:intron | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | + | chr6_2:71250928-71250947 | Msa0927120:CDS | 30.0% | |
| TTGAAAAGGACTAATTCTAC+AGG | + | chr6_2:71251169-71251188 | Msa0927120:CDS | 30.0% | |
| ! | AGAAAAATGTTTGAGATCCC+TGG | + | chr6_2:71247767-71247786 | Msa0927120:exon | 35.0% |
| ! | GAAAAATGTTTGAGATCCCT+GGG | + | chr6_2:71247768-71247787 | Msa0927120:exon | 35.0% |
| AACCTTGAATATGTTTCCCA+GGG | - | chr6_2:71247787-71247806 | None:intergenic | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | - | chr6_2:71247788-71247807 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | - | chr6_2:71247891-71247910 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | - | chr6_2:71247917-71247936 | None:intergenic | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | - | chr6_2:71247989-71248008 | None:intergenic | 35.0% | |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | + | chr6_2:71248505-71248524 | Msa0927120:CDS | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | - | chr6_2:71248587-71248606 | None:intergenic | 35.0% |
| TACCCTCAAATCTTTATGGT+AGG | + | chr6_2:71248615-71248634 | Msa0927120:intron | 35.0% | |
| !! | CATGACATGTGGTTTGTTAT+AGG | + | chr6_2:71248703-71248722 | Msa0927120:intron | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | + | chr6_2:71248952-71248971 | Msa0927120:intron | 35.0% |
| GGTGGAGAAAAGAAATTGAA+TGG | + | chr6_2:71249019-71249038 | Msa0927120:CDS | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | + | chr6_2:71249184-71249203 | Msa0927120:intron | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | + | chr6_2:71249185-71249204 | Msa0927120:intron | 35.0% | |
| GTCGTTTGATTAAGATCAGA+TGG | - | chr6_2:71249301-71249320 | None:intergenic | 35.0% | |
| ATATCCCAATTGCATGAATG+CGG | + | chr6_2:71249326-71249345 | Msa0927120:intron | 35.0% | |
| AAGATTCGTAGAGAACAACA+TGG | + | chr6_2:71249389-71249408 | Msa0927120:intron | 35.0% | |
| ! | GATCTTGAAATTTGAAGTCG+TGG | - | chr6_2:71249485-71249504 | None:intergenic | 35.0% |
| GTCACAGAAATATCTAGTGA+CGG | - | chr6_2:71249507-71249526 | None:intergenic | 35.0% | |
| TTATGTAGATCATGACGACT+CGG | + | chr6_2:71249548-71249567 | Msa0927120:intron | 35.0% | |
| GTTAAGCTGCATATCCAAAT+AGG | - | chr6_2:71249654-71249673 | None:intergenic | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | + | chr6_2:71249771-71249790 | Msa0927120:CDS | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | + | chr6_2:71249815-71249834 | Msa0927120:CDS | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | + | chr6_2:71249818-71249837 | Msa0927120:CDS | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | - | chr6_2:71249906-71249925 | None:intergenic | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | - | chr6_2:71249941-71249960 | None:intergenic | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | - | chr6_2:71249982-71250001 | None:intergenic | 35.0% | |
| TATCTCTATACCGTCTCAAA+TGG | - | chr6_2:71250081-71250100 | None:intergenic | 35.0% | |
| TTCTTTCATGTCTGTCAGAA+TGG | + | chr6_2:71250134-71250153 | Msa0927120:intron | 35.0% | |
| TACTGTCGAATACTTTGATC+CGG | + | chr6_2:71250193-71250212 | Msa0927120:CDS | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | - | chr6_2:71250246-71250265 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | + | chr6_2:71250255-71250274 | Msa0927120:CDS | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | - | chr6_2:71250268-71250287 | None:intergenic | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | + | chr6_2:71250322-71250341 | Msa0927120:CDS | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | + | chr6_2:71250401-71250420 | Msa0927120:CDS | 35.0% | |
| CAGCAAAATCCAATACAACA+AGG | + | chr6_2:71250448-71250467 | Msa0927120:CDS | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | + | chr6_2:71250645-71250664 | Msa0927120:intron | 35.0% | |
| TAGTTTACTGATAAGTGGAC+CGG | + | chr6_2:71250650-71250669 | Msa0927120:intron | 35.0% | |
| ! | AGAGAAAATCACTGCTGTTT+CGG | + | chr6_2:71250743-71250762 | Msa0927120:intron | 35.0% |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | - | chr6_2:71250915-71250934 | None:intergenic | 35.0% |
| !! | TGGCTTACACAGTTTTATCA+AGG | + | chr6_2:71250948-71250967 | Msa0927120:CDS | 35.0% |
| AATGACAAAGAATCCATCGT+TGG | + | chr6_2:71250997-71251016 | Msa0927120:CDS | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | - | chr6_2:71251127-71251146 | None:intergenic | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | + | chr6_2:71251129-71251148 | Msa0927120:CDS | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | + | chr6_2:71251130-71251149 | Msa0927120:CDS | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | + | chr6_2:71251155-71251174 | Msa0927120:CDS | 35.0% | |
| ATCCCTGGGAAACATATTCA+AGG | + | chr6_2:71247782-71247801 | Msa0927120:CDS | 40.0% | |
| !! | ATTATACCAGTTGGTGGCTT+AGG | - | chr6_2:71247980-71247999 | None:intergenic | 40.0% |
| AAATGGTGTTTCTTCAGCAC+TGG | + | chr6_2:71248549-71248568 | Msa0927120:CDS | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | + | chr6_2:71248580-71248599 | Msa0927120:CDS | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | - | chr6_2:71248957-71248976 | None:intergenic | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | - | chr6_2:71248997-71249016 | None:intergenic | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | + | chr6_2:71248998-71249017 | Msa0927120:CDS | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | + | chr6_2:71249077-71249096 | Msa0927120:CDS | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | - | chr6_2:71249081-71249100 | None:intergenic | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | + | chr6_2:71249081-71249100 | Msa0927120:CDS | 40.0% | |
| ATTCGGCTTCCATACGATTA+GGG | + | chr6_2:71249161-71249180 | Msa0927120:intron | 40.0% | |
| TTCTCCGCATTCATGCAATT+GGG | - | chr6_2:71249333-71249352 | None:intergenic | 40.0% | |
| ATTCTCCGCATTCATGCAAT+TGG | - | chr6_2:71249334-71249353 | None:intergenic | 40.0% | |
| AAAAGTGATGAGGAAGCTGA+AGG | + | chr6_2:71249781-71249800 | Msa0927120:CDS | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | - | chr6_2:71249847-71249866 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | + | chr6_2:71249847-71249866 | Msa0927120:CDS | 40.0% | |
| TGTCAGATGTAGCTGTGAAA+TGG | + | chr6_2:71249872-71249891 | Msa0927120:CDS | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | + | chr6_2:71249987-71250006 | Msa0927120:CDS | 40.0% | |
| ACTGTCGAATACTTTGATCC+GGG | + | chr6_2:71250194-71250213 | Msa0927120:CDS | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | - | chr6_2:71250215-71250234 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | - | chr6_2:71250431-71250450 | None:intergenic | 40.0% | |
| !!! | TTAGTCCGTGTTTGGTTTTG+TGG | - | chr6_2:71250604-71250623 | None:intergenic | 40.0% |
| ACGATGTATTAGTCCGTGTT+TGG | - | chr6_2:71250612-71250631 | None:intergenic | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | - | chr6_2:71250785-71250804 | None:intergenic | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | + | chr6_2:71250877-71250896 | Msa0927120:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | + | chr6_2:71250883-71250902 | Msa0927120:intron | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | + | chr6_2:71250884-71250903 | Msa0927120:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | - | chr6_2:71251033-71251052 | None:intergenic | 40.0% | |
| TTTATCCCATCCTCAGAGTT+TGG | - | chr6_2:71251079-71251098 | None:intergenic | 40.0% | |
| ! | ACTCTGAGGATGGGATAAAA+AGG | + | chr6_2:71251080-71251099 | Msa0927120:CDS | 40.0% |
| GATTTCATGGGATGGACAAA+AGG | + | chr6_2:71251142-71251161 | Msa0927120:CDS | 40.0% | |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | - | chr6_2:71247902-71247921 | None:intergenic | 45.0% |
| CCATTGGAAACTCAGCCAAT+AGG | + | chr6_2:71247899-71247918 | Msa0927120:CDS | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+AGG | + | chr6_2:71248520-71248539 | Msa0927120:CDS | 45.0% |
| GTGTCACATGACATGACATG+TGG | + | chr6_2:71248692-71248711 | Msa0927120:intron | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | + | chr6_2:71248989-71249008 | Msa0927120:CDS | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | + | chr6_2:71249001-71249020 | Msa0927120:CDS | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | + | chr6_2:71249092-71249111 | Msa0927120:CDS | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | + | chr6_2:71249095-71249114 | Msa0927120:CDS | 45.0% | |
| AAGCTGAGTGTTTACCTCCA+TGG | - | chr6_2:71249112-71249131 | None:intergenic | 45.0% | |
| GATTCGGCTTCCATACGATT+AGG | + | chr6_2:71249160-71249179 | Msa0927120:intron | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | - | chr6_2:71249173-71249192 | None:intergenic | 45.0% | |
| CTGTCCCAATTGTCTGAATG+TGG | - | chr6_2:71249192-71249211 | None:intergenic | 45.0% | |
| TTCAGACAATTGGGACAGTG+TGG | + | chr6_2:71249194-71249213 | Msa0927120:intron | 45.0% | |
| GCCTTTCGATCATGATCGAA+CGG | + | chr6_2:71249216-71249235 | Msa0927120:intron | 45.0% | |
| ACCGTTCGATCATGATCGAA+AGG | - | chr6_2:71249220-71249239 | None:intergenic | 45.0% | |
| ATTCGGATTCCATGCAGTCA+AGG | - | chr6_2:71249357-71249376 | None:intergenic | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | + | chr6_2:71249579-71249598 | Msa0927120:CDS | 45.0% | |
| ACATCTGACAATCCTGTTGG+AGG | - | chr6_2:71249862-71249881 | None:intergenic | 45.0% | |
| GCTACATCTGACAATCCTGT+TGG | - | chr6_2:71249865-71249884 | None:intergenic | 45.0% | |
| ! | CCATGGCTGCTTTAAGTACT+TGG | - | chr6_2:71249924-71249943 | None:intergenic | 45.0% |
| CCAAGTACTTAAAGCAGCCA+TGG | + | chr6_2:71249921-71249940 | Msa0927120:CDS | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | + | chr6_2:71249951-71249970 | Msa0927120:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | - | chr6_2:71249968-71249987 | None:intergenic | 45.0% | |
| ACTTGCGAGACCATTTGAGA+CGG | + | chr6_2:71250068-71250087 | Msa0927120:intron | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | + | chr6_2:71250149-71250168 | Msa0927120:intron | 45.0% | |
| !! | ACTTATAGATCGACTCGCCA+AGG | - | chr6_2:71250169-71250188 | None:intergenic | 45.0% |
| GGGACAATTCCTCTCAACAA+TGG | + | chr6_2:71250214-71250233 | Msa0927120:CDS | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | - | chr6_2:71250226-71250245 | None:intergenic | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | + | chr6_2:71250334-71250353 | Msa0927120:CDS | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | + | chr6_2:71250343-71250362 | Msa0927120:CDS | 45.0% | |
| TGCCACCACAAAACCAAACA+CGG | + | chr6_2:71250596-71250615 | Msa0927120:intron | 45.0% | |
| ! | CCCACATCCTGTGATCATTT+TGG | - | chr6_2:71250887-71250906 | None:intergenic | 45.0% |
| GACAAAGAATCCATCGTTGG+CGG | + | chr6_2:71251000-71251019 | Msa0927120:CDS | 45.0% | |
| GCAAACATCTCCAAACTCTG+AGG | + | chr6_2:71251066-71251085 | Msa0927120:CDS | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | + | chr6_2:71251070-71251089 | Msa0927120:CDS | 45.0% |
| ! | CATCTCCAAACTCTGAGGAT+GGG | + | chr6_2:71251071-71251090 | Msa0927120:CDS | 45.0% |
| TCTGAGAGAGTCATTGATGG+TGG | - | chr6_2:71251124-71251143 | None:intergenic | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | + | chr6_2:71251134-71251153 | Msa0927120:CDS | 45.0% | |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | + | chr6_2:71248451-71248470 | Msa0927120:intron | 5.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | - | chr6_2:71247977-71247996 | None:intergenic | 50.0% |
| GACATGTCAGGTGCAGGAAA+TGG | + | chr6_2:71248532-71248551 | Msa0927120:CDS | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | + | chr6_2:71250342-71250361 | Msa0927120:CDS | 50.0% | |
| AGTGAAGACTGTGGAAGTCC+TGG | - | chr6_2:71250422-71250441 | None:intergenic | 50.0% | |
| !!! | GTCCGTGTTTGGTTTTGTGG+TGG | - | chr6_2:71250601-71250620 | None:intergenic | 50.0% |
| AAAGGGTAGTCGAGAGTGAC+CGG | - | chr6_2:71250672-71250691 | None:intergenic | 50.0% | |
| !! | ATCACTGCTGTTTCGGAGAC+TGG | + | chr6_2:71250750-71250769 | Msa0927120:intron | 50.0% |
| CTCGTTGGATTCTTTGCCAG+TGG | + | chr6_2:71251039-71251058 | Msa0927120:CDS | 50.0% | |
| GTTGGATTCTTTGCCAGTGG+CGG | + | chr6_2:71251042-71251061 | Msa0927120:CDS | 50.0% | |
| ATGCCTCCTAAGCCACCAAC+TGG | + | chr6_2:71247971-71247990 | Msa0927120:CDS | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | + | chr6_2:71248526-71248545 | Msa0927120:CDS | 55.0% | |
| GCGGAGAATCCTTGACTGCA+TGG | + | chr6_2:71249345-71249364 | Msa0927120:intron | 55.0% | |
| CATCGCATCAAGCTTGCGCA+AGG | - | chr6_2:71249605-71249624 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | + | chr6_2:71251024-71251043 | Msa0927120:CDS | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | - | chr6_2:71251029-71251048 | None:intergenic | 55.0% | |
| GCATCAAGCTTGCGCAAGGC+CGG | - | chr6_2:71249601-71249620 | None:intergenic | 60.0% | |
| GGAGATGTTTGCTCCGCCAC+TGG | - | chr6_2:71251058-71251077 | None:intergenic | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | + | chr6_2:71251011-71251030 | Msa0927120:CDS | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | - | chr6_2:71251013-71251032 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 71247743 | 71251318 | 71247743 | ID=Msa0927120;Name=Msa0927120 |
| chr6_2 | mRNA | 71247743 | 71251318 | 71247743 | ID=Msa0927120-mRNA-1;Parent=Msa0927120;Name=Msa0927120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=30|0.83|0.57|1|1|1|7|0|526 |
| chr6_2 | exon | 71247743 | 71247992 | 71247743 | ID=Msa0927120-mRNA-1:exon:11764;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71248485 | 71248601 | 71248485 | ID=Msa0927120-mRNA-1:exon:11765;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71248962 | 71249116 | 71248962 | ID=Msa0927120-mRNA-1:exon:11766;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71249556 | 71249630 | 71249556 | ID=Msa0927120-mRNA-1:exon:11767;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71249733 | 71250008 | 71249733 | ID=Msa0927120-mRNA-1:exon:11768;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71250152 | 71250469 | 71250152 | ID=Msa0927120-mRNA-1:exon:11769;Parent=Msa0927120-mRNA-1 |
| chr6_2 | exon | 71250899 | 71251318 | 71250899 | ID=Msa0927120-mRNA-1:exon:11770;Parent=Msa0927120-mRNA-1 |
| chr6_2 | five_prime_UTR | 71247743 | 71247772 | 71247743 | ID=Msa0927120-mRNA-1:five_prime_utr;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71247773 | 71247992 | 71247773 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71248485 | 71248601 | 71248485 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71248962 | 71249116 | 71248962 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71249556 | 71249630 | 71249556 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71249733 | 71250008 | 71249733 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71250152 | 71250469 | 71250152 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| chr6_2 | CDS | 71250899 | 71251318 | 71250899 | ID=Msa0927120-mRNA-1:cds;Parent=Msa0927120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
