Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061790 | XP_013466645.1 | 93.023 | 258 | 11 | 2 | 11 | 268 | 1 | 251 | 1.99e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061790 | sp|Q39263|ZFP4_ARATH | 41.758 | 182 | 81 | 6 | 108 | 268 | 83 | 260 | 4.99e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061790 | A0A072VGF6 | 93.023 | 258 | 11 | 2 | 11 | 268 | 1 | 251 | 9.52e-175 | 491 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0061790 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061790 | Msa1465170 | 0.956327 | 3.829687e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061790 | MtrunA17_Chr1g0161901 | 93.023 | 258 | 11 | 2 | 11 | 268 | 1 | 251 | 1.83e-178 | 491 |
| Msa0061790 | MtrunA17_Chr8g0376021 | 51.751 | 257 | 84 | 8 | 12 | 268 | 1 | 217 | 1.19e-74 | 226 |
| Msa0061790 | MtrunA17_Chr3g0110091 | 40.157 | 254 | 134 | 6 | 15 | 268 | 3 | 238 | 2.65e-56 | 181 |
| Msa0061790 | MtrunA17_Chr5g0434121 | 43.985 | 266 | 104 | 11 | 16 | 268 | 4 | 237 | 4.37e-56 | 180 |
| Msa0061790 | MtrunA17_Chr2g0333741 | 66.234 | 77 | 21 | 2 | 108 | 179 | 81 | 157 | 4.08e-26 | 102 |
| Msa0061790 | MtrunA17_Chr1g0149811 | 38.356 | 146 | 71 | 2 | 53 | 179 | 35 | 180 | 2.33e-23 | 95.9 |
| Msa0061790 | MtrunA17_Chr4g0001081 | 58.108 | 74 | 19 | 3 | 108 | 179 | 67 | 130 | 8.77e-19 | 82.4 |
| Msa0061790 | MtrunA17_Chr1g0207691 | 38.889 | 126 | 59 | 4 | 108 | 229 | 64 | 175 | 1.31e-18 | 81.3 |
| Msa0061790 | MtrunA17_Chr3g0137111 | 43.103 | 116 | 45 | 5 | 79 | 179 | 49 | 158 | 4.26e-18 | 80.9 |
| Msa0061790 | MtrunA17_Chr4g0072571 | 36.719 | 128 | 63 | 4 | 108 | 233 | 45 | 156 | 1.62e-16 | 75.1 |
| Msa0061790 | MtrunA17_Chr4g0053691 | 36.364 | 143 | 66 | 7 | 100 | 239 | 57 | 177 | 1.37e-14 | 70.1 |
| Msa0061790 | MtrunA17_Chr7g0254221 | 52.830 | 53 | 23 | 2 | 92 | 144 | 19 | 69 | 1.12e-11 | 61.6 |
| Msa0061790 | MtrunA17_Chr7g0251581 | 69.697 | 33 | 10 | 0 | 108 | 140 | 39 | 71 | 2.45e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061790 | AT1G66140.1 | 41.758 | 182 | 81 | 6 | 108 | 268 | 83 | 260 | 5.07e-37 | 132 |
| Msa0061790 | AT1G24625.1 | 39.648 | 227 | 94 | 10 | 49 | 268 | 19 | 209 | 3.69e-32 | 117 |
| Msa0061790 | AT1G80730.1 | 57.955 | 88 | 21 | 3 | 108 | 179 | 66 | 153 | 1.43e-23 | 95.9 |
| Msa0061790 | AT5G10970.1 | 56.098 | 82 | 29 | 3 | 107 | 185 | 101 | 178 | 2.47e-21 | 90.9 |
| Msa0061790 | AT5G25160.1 | 55.263 | 76 | 30 | 2 | 108 | 179 | 59 | 134 | 9.32e-21 | 88.6 |
| Msa0061790 | AT5G57520.1 | 51.515 | 66 | 32 | 0 | 108 | 173 | 50 | 115 | 2.00e-15 | 72.0 |
| Msa0061790 | AT5G14010.1 | 47.945 | 73 | 27 | 1 | 104 | 165 | 32 | 104 | 2.63e-15 | 72.0 |
| Msa0061790 | AT5G01860.1 | 55.814 | 43 | 19 | 0 | 105 | 147 | 62 | 104 | 4.55e-11 | 61.6 |
| Msa0061790 | AT3G58070.1 | 55.769 | 52 | 20 | 1 | 92 | 143 | 76 | 124 | 9.07e-11 | 61.2 |
Find 48 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTTCCAAGTTCAAATT+TGG | 0.203450 | 1_2:-20526993 | None:intergenic |
| ATGAAGATGTCGGCGTATTT+TGG | 0.224650 | 1_2:+20527594 | Msa0061790:CDS |
| TTTCTCATGTTCATTCTCTA+TGG | 0.249793 | 1_2:+20527801 | Msa0061790:three_prime_UTR |
| GACATCAGAATGCTCATAAA+AGG | 0.253478 | 1_2:+20527330 | Msa0061790:CDS |
| GAGTATTCATCATGTTGATA+TGG | 0.280142 | 1_2:-20526971 | None:intergenic |
| TTAGCTTCTTTACCTCTTCA+TGG | 0.299313 | 1_2:+20527413 | Msa0061790:CDS |
| TTCTCTATGGACATTCTCTA+TGG | 0.304572 | 1_2:+20527814 | Msa0061790:three_prime_UTR |
| AGAAGTTGTAGCACTGTCTT+TGG | 0.324664 | 1_2:-20527084 | None:intergenic |
| ACGATGATGGCATGTGGTTT+TGG | 0.333669 | 1_2:-20527484 | None:intergenic |
| TTTATCTGCCTGAAACTTCC+AGG | 0.347691 | 1_2:-20527617 | None:intergenic |
| CATATCCTGATCTTACTTTG+AGG | 0.427108 | 1_2:+20527729 | Msa0061790:CDS |
| TCCGAGCGATGAAGATTTGA+AGG | 0.428555 | 1_2:+20527172 | Msa0061790:CDS |
| TCCTTCAAATCTTCATCGCT+CGG | 0.432671 | 1_2:-20527173 | None:intergenic |
| AAATTTGAGAAAGATTGTTT+CGG | 0.446566 | 1_2:+20527548 | Msa0061790:CDS |
| AACTTCTTCTTGTCTTACTA+AGG | 0.451364 | 1_2:+20527100 | Msa0061790:CDS |
| GAATACTCCAAATTTGAACT+TGG | 0.473476 | 1_2:+20526986 | Msa0061790:CDS |
| TCGGATTGAAGTTGAGAGTC+AGG | 0.475494 | 1_2:-20527154 | None:intergenic |
| TTCTTTAGCTCACAAGCGTT+AGG | 0.479990 | 1_2:+20527305 | Msa0061790:CDS |
| CAAAGCGCGCTATGCGAGTA+GGG | 0.487145 | 1_2:+20527366 | Msa0061790:CDS |
| ACTAAGGCAGACATTAATCC+AGG | 0.488717 | 1_2:+20527116 | Msa0061790:CDS |
| AGCTAAGCTTGTATACCCTT+CGG | 0.491197 | 1_2:-20527396 | None:intergenic |
| TCTTTCTCAAATTTCGCTGT+AGG | 0.497994 | 1_2:-20527539 | None:intergenic |
| GTAGTAGATGTTTGTTGAGG+AGG | 0.505399 | 1_2:-20527707 | None:intergenic |
| ATCAGCATCGACGACGATGA+TGG | 0.511996 | 1_2:-20527497 | None:intergenic |
| TAAAGCCTCAAAGTAAGATC+AGG | 0.515851 | 1_2:-20527734 | None:intergenic |
| TCTCTTGTAATTATTGTAGG+AGG | 0.522769 | 1_2:+20527279 | Msa0061790:CDS |
| TGATTCTTGTAAGTATATGT+TGG | 0.525252 | 1_2:-20527048 | None:intergenic |
| GAGAAAACTCTATGAATCGC+TGG | 0.540223 | 1_2:-20527260 | None:intergenic |
| GCAAAGCGCGCTATGCGAGT+AGG | 0.540707 | 1_2:+20527365 | Msa0061790:CDS |
| CATCGTCGTCGATGCTGATG+AGG | 0.540974 | 1_2:+20527501 | Msa0061790:CDS |
| AGGTCAAGGGAAATAGAACC+TGG | 0.542650 | 1_2:-20527134 | None:intergenic |
| ACATCAGAATGCTCATAAAA+GGG | 0.543025 | 1_2:+20527331 | Msa0061790:CDS |
| AGTATATGTTGGAACCTACT+TGG | 0.544787 | 1_2:-20527037 | None:intergenic |
| AACTCTATGAATCGCTGGTG+CGG | 0.556385 | 1_2:-20527255 | None:intergenic |
| ATCGTCGTCGATGCTGATGA+GGG | 0.568860 | 1_2:+20527502 | Msa0061790:CDS |
| TATGTAGTAGATGTTTGTTG+AGG | 0.576983 | 1_2:-20527710 | None:intergenic |
| TTTAGCTCACAAGCGTTAGG+TGG | 0.582305 | 1_2:+20527308 | Msa0061790:CDS |
| TGAAGTTGAGAGTCAGGTCA+AGG | 0.584371 | 1_2:-20527148 | None:intergenic |
| TTAGAAGTAAGCAGCCAAGT+AGG | 0.598009 | 1_2:+20527023 | Msa0061790:CDS |
| CGAGTAGGGATGTTTACCGA+AGG | 0.601367 | 1_2:+20527380 | Msa0061790:CDS |
| GACACTAACAGTGAAGTACT+AGG | 0.613028 | 1_2:+20527203 | Msa0061790:CDS |
| AAAGAAGAAGAACCATGAAG+AGG | 0.622542 | 1_2:-20527425 | None:intergenic |
| GAAGTTGAGAGTCAGGTCAA+GGG | 0.634039 | 1_2:-20527147 | None:intergenic |
| TTTATGCATAATGAAGATGT+CGG | 0.651635 | 1_2:+20527584 | Msa0061790:CDS |
| GAGTAGGGATGTTTACCGAA+GGG | 0.666419 | 1_2:+20527381 | Msa0061790:CDS |
| TCTTCATTATGCATAAACAT+CGG | 0.674163 | 1_2:-20527578 | None:intergenic |
| TCATAAAAGGGAGAGAACGA+TGG | 0.677286 | 1_2:+20527343 | Msa0061790:CDS |
| TCGACGACGATGATGGCATG+TGG | 0.703332 | 1_2:-20527490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAAATAGAAGTTTA+AGG | + | chr1_2:20526632-20526651 | Msa0061790:intron | 15.0% |
| !!! | TTTTAAAAAGCTCAATAAAT+TGG | + | chr1_2:20526866-20526885 | Msa0061790:intron | 15.0% |
| !!! | TTGTATCTTTAGTTTTTTTT+TGG | + | chr1_2:20527763-20527782 | Msa0061790:three_prime_UTR | 15.0% |
| !!! | TTTTGATAAATAGAAGTTTA+AGG | + | chr1_2:20526632-20526651 | Msa0061790:intron | 15.0% |
| !!! | TTTTAAAAAGCTCAATAAAT+TGG | + | chr1_2:20526866-20526885 | Msa0061790:intron | 15.0% |
| !!! | TTGTATCTTTAGTTTTTTTT+TGG | + | chr1_2:20527763-20527782 | Msa0061790:three_prime_UTR | 15.0% |
| !! | TTTCTATAATGCAATTTCTA+GGG | - | chr1_2:20525867-20525886 | None:intergenic | 20.0% |
| !!! | TTTTCTATAATGCAATTTCT+AGG | - | chr1_2:20525868-20525887 | None:intergenic | 20.0% |
| !! | AAAAATACAAAAGATGTTGT+CGG | + | chr1_2:20525885-20525904 | Msa0061790:intron | 20.0% |
| !! | AAATCCAAATCTAAAGAAAA+CGG | - | chr1_2:20525948-20525967 | None:intergenic | 20.0% |
| !! | TATTGAAAATTGTAACATGA+TGG | + | chr1_2:20526520-20526539 | Msa0061790:intron | 20.0% |
| !!! | TAAAGAAAAAGGACATATTT+TGG | + | chr1_2:20526704-20526723 | Msa0061790:intron | 20.0% |
| !! | ATGCATTTAATCATTAATGT+AGG | + | chr1_2:20526936-20526955 | Msa0061790:intron | 20.0% |
| !!! | TTTTCTCTTGTAATTATTGT+AGG | + | chr1_2:20527276-20527295 | Msa0061790:CDS | 20.0% |
| !! | AAATTTGAGAAAGATTGTTT+CGG | + | chr1_2:20527548-20527567 | Msa0061790:CDS | 20.0% |
| !! | TTTCTATAATGCAATTTCTA+GGG | - | chr1_2:20525867-20525886 | None:intergenic | 20.0% |
| !!! | TTTTCTATAATGCAATTTCT+AGG | - | chr1_2:20525868-20525887 | None:intergenic | 20.0% |
| !! | AAAAATACAAAAGATGTTGT+CGG | + | chr1_2:20525885-20525904 | Msa0061790:intron | 20.0% |
| !! | AAATCCAAATCTAAAGAAAA+CGG | - | chr1_2:20525948-20525967 | None:intergenic | 20.0% |
| !! | TATTGAAAATTGTAACATGA+TGG | + | chr1_2:20526520-20526539 | Msa0061790:intron | 20.0% |
| !!! | TAAAGAAAAAGGACATATTT+TGG | + | chr1_2:20526704-20526723 | Msa0061790:intron | 20.0% |
| !! | ATGCATTTAATCATTAATGT+AGG | + | chr1_2:20526936-20526955 | Msa0061790:intron | 20.0% |
| !!! | TTTTCTCTTGTAATTATTGT+AGG | + | chr1_2:20527276-20527295 | Msa0061790:CDS | 20.0% |
| !! | AAATTTGAGAAAGATTGTTT+CGG | + | chr1_2:20527548-20527567 | Msa0061790:CDS | 20.0% |
| ! | GAAAATAAATTACAGCTCAT+AGG | + | chr1_2:20526318-20526337 | Msa0061790:intron | 25.0% |
| ! | TTGTAACATGATGGTAATTT+AGG | + | chr1_2:20526529-20526548 | Msa0061790:intron | 25.0% |
| ! | GAAAAGTCAAGTAAAGAAAA+AGG | + | chr1_2:20526693-20526712 | Msa0061790:intron | 25.0% |
| ! | TGATTCTTGTAAGTATATGT+TGG | - | chr1_2:20527051-20527070 | None:intergenic | 25.0% |
| ! | TCTTCATTATGCATAAACAT+CGG | - | chr1_2:20527581-20527600 | None:intergenic | 25.0% |
| ! | TTTATGCATAATGAAGATGT+CGG | + | chr1_2:20527584-20527603 | Msa0061790:CDS | 25.0% |
| ! | GAAAATAAATTACAGCTCAT+AGG | + | chr1_2:20526318-20526337 | Msa0061790:intron | 25.0% |
| ! | TTGTAACATGATGGTAATTT+AGG | + | chr1_2:20526529-20526548 | Msa0061790:intron | 25.0% |
| ! | GAAAAGTCAAGTAAAGAAAA+AGG | + | chr1_2:20526693-20526712 | Msa0061790:intron | 25.0% |
| ! | TGATTCTTGTAAGTATATGT+TGG | - | chr1_2:20527051-20527070 | None:intergenic | 25.0% |
| ! | TCTTCATTATGCATAAACAT+CGG | - | chr1_2:20527581-20527600 | None:intergenic | 25.0% |
| ! | TTTATGCATAATGAAGATGT+CGG | + | chr1_2:20527584-20527603 | Msa0061790:CDS | 25.0% |
| TGACTCAACTCAATAATAAG+TGG | + | chr1_2:20525802-20525821 | Msa0061790:intron | 30.0% | |
| ! | TTGTCCGTTTTCTTTAGATT+TGG | + | chr1_2:20525941-20525960 | Msa0061790:intron | 30.0% |
| TTACCAATAGATTGTGAAAG+AGG | + | chr1_2:20526089-20526108 | Msa0061790:intron | 30.0% | |
| AACTTATTTGTCACAGACTA+AGG | + | chr1_2:20526154-20526173 | Msa0061790:intron | 30.0% | |
| ACTTATTTGTCACAGACTAA+GGG | + | chr1_2:20526155-20526174 | Msa0061790:intron | 30.0% | |
| AGACTCTTGAAGATAGTTTA+TGG | + | chr1_2:20526228-20526247 | Msa0061790:intron | 30.0% | |
| TTTCATAAGTTATCCTAGAG+AGG | - | chr1_2:20526302-20526321 | None:intergenic | 30.0% | |
| ! | GTTACAGTTAGGTTCTTTTT+GGG | - | chr1_2:20526446-20526465 | None:intergenic | 30.0% |
| ! | TGTTACAGTTAGGTTCTTTT+TGG | - | chr1_2:20526447-20526466 | None:intergenic | 30.0% |
| AACCTAACTGTAACAAACTA+AGG | + | chr1_2:20526452-20526471 | Msa0061790:intron | 30.0% | |
| ACCTAACTGTAACAAACTAA+GGG | + | chr1_2:20526453-20526472 | Msa0061790:intron | 30.0% | |
| GCAAGAAAAATCCAATACAA+GGG | - | chr1_2:20526482-20526501 | None:intergenic | 30.0% | |
| AGCAAGAAAAATCCAATACA+AGG | - | chr1_2:20526483-20526502 | None:intergenic | 30.0% | |
| TATAACAATGACATGAAGTG+AGG | - | chr1_2:20526600-20526619 | None:intergenic | 30.0% | |
| TTGTCAAATGGAAAAGTTCT+GGG | - | chr1_2:20526740-20526759 | None:intergenic | 30.0% | |
| TTTGTCAAATGGAAAAGTTC+TGG | - | chr1_2:20526741-20526760 | None:intergenic | 30.0% | |
| GAGTATTCATCATGTTGATA+TGG | - | chr1_2:20526974-20526993 | None:intergenic | 30.0% | |
| GAATACTCCAAATTTGAACT+TGG | + | chr1_2:20526986-20527005 | Msa0061790:CDS | 30.0% | |
| AACTTCTTCTTGTCTTACTA+AGG | + | chr1_2:20527100-20527119 | Msa0061790:CDS | 30.0% | |
| TCTCTTGTAATTATTGTAGG+AGG | + | chr1_2:20527279-20527298 | Msa0061790:CDS | 30.0% | |
| ACATCAGAATGCTCATAAAA+GGG | + | chr1_2:20527331-20527350 | Msa0061790:CDS | 30.0% | |
| ! | TCTTCTTCTTTTCATTCTCT+TGG | + | chr1_2:20527437-20527456 | Msa0061790:CDS | 30.0% |
| ! | TATGTAGTAGATGTTTGTTG+AGG | - | chr1_2:20527713-20527732 | None:intergenic | 30.0% |
| TTTCTCATGTTCATTCTCTA+TGG | + | chr1_2:20527801-20527820 | Msa0061790:three_prime_UTR | 30.0% | |
| TGACTCAACTCAATAATAAG+TGG | + | chr1_2:20525802-20525821 | Msa0061790:intron | 30.0% | |
| ! | TTGTCCGTTTTCTTTAGATT+TGG | + | chr1_2:20525941-20525960 | Msa0061790:intron | 30.0% |
| TTACCAATAGATTGTGAAAG+AGG | + | chr1_2:20526089-20526108 | Msa0061790:intron | 30.0% | |
| AACTTATTTGTCACAGACTA+AGG | + | chr1_2:20526154-20526173 | Msa0061790:intron | 30.0% | |
| ACTTATTTGTCACAGACTAA+GGG | + | chr1_2:20526155-20526174 | Msa0061790:intron | 30.0% | |
| AGACTCTTGAAGATAGTTTA+TGG | + | chr1_2:20526228-20526247 | Msa0061790:intron | 30.0% | |
| TTTCATAAGTTATCCTAGAG+AGG | - | chr1_2:20526302-20526321 | None:intergenic | 30.0% | |
| ! | GTTACAGTTAGGTTCTTTTT+GGG | - | chr1_2:20526446-20526465 | None:intergenic | 30.0% |
| ! | TGTTACAGTTAGGTTCTTTT+TGG | - | chr1_2:20526447-20526466 | None:intergenic | 30.0% |
| AACCTAACTGTAACAAACTA+AGG | + | chr1_2:20526452-20526471 | Msa0061790:intron | 30.0% | |
| ACCTAACTGTAACAAACTAA+GGG | + | chr1_2:20526453-20526472 | Msa0061790:intron | 30.0% | |
| GCAAGAAAAATCCAATACAA+GGG | - | chr1_2:20526482-20526501 | None:intergenic | 30.0% | |
| AGCAAGAAAAATCCAATACA+AGG | - | chr1_2:20526483-20526502 | None:intergenic | 30.0% | |
| TATAACAATGACATGAAGTG+AGG | - | chr1_2:20526600-20526619 | None:intergenic | 30.0% | |
| TTGTCAAATGGAAAAGTTCT+GGG | - | chr1_2:20526740-20526759 | None:intergenic | 30.0% | |
| TTTGTCAAATGGAAAAGTTC+TGG | - | chr1_2:20526741-20526760 | None:intergenic | 30.0% | |
| GAGTATTCATCATGTTGATA+TGG | - | chr1_2:20526974-20526993 | None:intergenic | 30.0% | |
| GAATACTCCAAATTTGAACT+TGG | + | chr1_2:20526986-20527005 | Msa0061790:CDS | 30.0% | |
| AACTTCTTCTTGTCTTACTA+AGG | + | chr1_2:20527100-20527119 | Msa0061790:CDS | 30.0% | |
| TCTCTTGTAATTATTGTAGG+AGG | + | chr1_2:20527279-20527298 | Msa0061790:CDS | 30.0% | |
| ACATCAGAATGCTCATAAAA+GGG | + | chr1_2:20527331-20527350 | Msa0061790:CDS | 30.0% | |
| ! | TCTTCTTCTTTTCATTCTCT+TGG | + | chr1_2:20527437-20527456 | Msa0061790:CDS | 30.0% |
| ! | TATGTAGTAGATGTTTGTTG+AGG | - | chr1_2:20527713-20527732 | None:intergenic | 30.0% |
| TTTCTCATGTTCATTCTCTA+TGG | + | chr1_2:20527801-20527820 | Msa0061790:three_prime_UTR | 30.0% | |
| !! | TGCAATTTCTAGGGTTATAG+AGG | - | chr1_2:20525858-20525877 | None:intergenic | 35.0% |
| ! | TCCTTAGAAGTTCAAGTTCA+TGG | + | chr1_2:20525987-20526006 | Msa0061790:intron | 35.0% |
| ACCATGAACTTGAACTTCTA+AGG | - | chr1_2:20525991-20526010 | None:intergenic | 35.0% | |
| ! | TGCAAACTTGTTCTGAATGA+AGG | + | chr1_2:20526026-20526045 | Msa0061790:intron | 35.0% |
| ! | GCAAACTTGTTCTGAATGAA+GGG | + | chr1_2:20526027-20526046 | Msa0061790:intron | 35.0% |
| ! | CGTATTTCTATAACCTCTCT+AGG | + | chr1_2:20526286-20526305 | Msa0061790:intron | 35.0% |
| !! | TCCCTTAGTTTGTTACAGTT+AGG | - | chr1_2:20526457-20526476 | None:intergenic | 35.0% |
| ! | ACTTTTCCATTTGACAAACC+TGG | + | chr1_2:20526743-20526762 | Msa0061790:intron | 35.0% |
| ATTAAGCCAGGTTTGTCAAA+TGG | - | chr1_2:20526752-20526771 | None:intergenic | 35.0% | |
| AAACCTGGCTTAATTTCCTT+AGG | + | chr1_2:20526758-20526777 | Msa0061790:intron | 35.0% | |
| ATACCTAAGGAAATTAAGCC+AGG | - | chr1_2:20526764-20526783 | None:intergenic | 35.0% | |
| GTGGATAGAAGAAATACCTA+AGG | - | chr1_2:20526777-20526796 | None:intergenic | 35.0% | |
| TCTATCCACAAACATTTGAG+AGG | + | chr1_2:20526788-20526807 | Msa0061790:intron | 35.0% | |
| AAACATTTGAGAGGACGTAT+CGG | + | chr1_2:20526797-20526816 | Msa0061790:intron | 35.0% | |
| TCAGCTTCCAAGTTCAAATT+TGG | - | chr1_2:20526996-20527015 | None:intergenic | 35.0% | |
| AGTATATGTTGGAACCTACT+TGG | - | chr1_2:20527040-20527059 | None:intergenic | 35.0% | |
| GACATCAGAATGCTCATAAA+AGG | + | chr1_2:20527330-20527349 | Msa0061790:CDS | 35.0% | |
| TTAGCTTCTTTACCTCTTCA+TGG | + | chr1_2:20527413-20527432 | Msa0061790:CDS | 35.0% | |
| AAAGAAGAAGAACCATGAAG+AGG | - | chr1_2:20527428-20527447 | None:intergenic | 35.0% | |
| TCTTTCTCAAATTTCGCTGT+AGG | - | chr1_2:20527542-20527561 | None:intergenic | 35.0% | |
| CATATCCTGATCTTACTTTG+AGG | + | chr1_2:20527729-20527748 | Msa0061790:CDS | 35.0% | |
| TAAAGCCTCAAAGTAAGATC+AGG | - | chr1_2:20527737-20527756 | None:intergenic | 35.0% | |
| TTCTCTATGGACATTCTCTA+TGG | + | chr1_2:20527814-20527833 | Msa0061790:three_prime_UTR | 35.0% | |
| !! | TGCAATTTCTAGGGTTATAG+AGG | - | chr1_2:20525858-20525877 | None:intergenic | 35.0% |
| ! | TCCTTAGAAGTTCAAGTTCA+TGG | + | chr1_2:20525987-20526006 | Msa0061790:intron | 35.0% |
| ACCATGAACTTGAACTTCTA+AGG | - | chr1_2:20525991-20526010 | None:intergenic | 35.0% | |
| ! | TGCAAACTTGTTCTGAATGA+AGG | + | chr1_2:20526026-20526045 | Msa0061790:intron | 35.0% |
| ! | GCAAACTTGTTCTGAATGAA+GGG | + | chr1_2:20526027-20526046 | Msa0061790:intron | 35.0% |
| ! | CGTATTTCTATAACCTCTCT+AGG | + | chr1_2:20526286-20526305 | Msa0061790:intron | 35.0% |
| !! | TCCCTTAGTTTGTTACAGTT+AGG | - | chr1_2:20526457-20526476 | None:intergenic | 35.0% |
| ! | ACTTTTCCATTTGACAAACC+TGG | + | chr1_2:20526743-20526762 | Msa0061790:intron | 35.0% |
| ATTAAGCCAGGTTTGTCAAA+TGG | - | chr1_2:20526752-20526771 | None:intergenic | 35.0% | |
| AAACCTGGCTTAATTTCCTT+AGG | + | chr1_2:20526758-20526777 | Msa0061790:intron | 35.0% | |
| ATACCTAAGGAAATTAAGCC+AGG | - | chr1_2:20526764-20526783 | None:intergenic | 35.0% | |
| GTGGATAGAAGAAATACCTA+AGG | - | chr1_2:20526777-20526796 | None:intergenic | 35.0% | |
| TCTATCCACAAACATTTGAG+AGG | + | chr1_2:20526788-20526807 | Msa0061790:intron | 35.0% | |
| AAACATTTGAGAGGACGTAT+CGG | + | chr1_2:20526797-20526816 | Msa0061790:intron | 35.0% | |
| TCAGCTTCCAAGTTCAAATT+TGG | - | chr1_2:20526996-20527015 | None:intergenic | 35.0% | |
| AGTATATGTTGGAACCTACT+TGG | - | chr1_2:20527040-20527059 | None:intergenic | 35.0% | |
| GACATCAGAATGCTCATAAA+AGG | + | chr1_2:20527330-20527349 | Msa0061790:CDS | 35.0% | |
| TTAGCTTCTTTACCTCTTCA+TGG | + | chr1_2:20527413-20527432 | Msa0061790:CDS | 35.0% | |
| AAAGAAGAAGAACCATGAAG+AGG | - | chr1_2:20527428-20527447 | None:intergenic | 35.0% | |
| TCTTTCTCAAATTTCGCTGT+AGG | - | chr1_2:20527542-20527561 | None:intergenic | 35.0% | |
| CATATCCTGATCTTACTTTG+AGG | + | chr1_2:20527729-20527748 | Msa0061790:CDS | 35.0% | |
| TAAAGCCTCAAAGTAAGATC+AGG | - | chr1_2:20527737-20527756 | None:intergenic | 35.0% | |
| TTCTCTATGGACATTCTCTA+TGG | + | chr1_2:20527814-20527833 | Msa0061790:three_prime_UTR | 35.0% | |
| GAGCCTCTTTCACAATCTAT+TGG | - | chr1_2:20526095-20526114 | None:intergenic | 40.0% | |
| TACGTCCTCTCAAATGTTTG+TGG | - | chr1_2:20526796-20526815 | None:intergenic | 40.0% | |
| TTAGAAGTAAGCAGCCAAGT+AGG | + | chr1_2:20527023-20527042 | Msa0061790:CDS | 40.0% | |
| AGAAGTTGTAGCACTGTCTT+TGG | - | chr1_2:20527087-20527106 | None:intergenic | 40.0% | |
| ACTAAGGCAGACATTAATCC+AGG | + | chr1_2:20527116-20527135 | Msa0061790:CDS | 40.0% | |
| TCCTTCAAATCTTCATCGCT+CGG | - | chr1_2:20527176-20527195 | None:intergenic | 40.0% | |
| ! | GACACTAACAGTGAAGTACT+AGG | + | chr1_2:20527203-20527222 | Msa0061790:CDS | 40.0% |
| GAGAAAACTCTATGAATCGC+TGG | - | chr1_2:20527263-20527282 | None:intergenic | 40.0% | |
| ! | TTCTTTAGCTCACAAGCGTT+AGG | + | chr1_2:20527305-20527324 | Msa0061790:CDS | 40.0% |
| TCATAAAAGGGAGAGAACGA+TGG | + | chr1_2:20527343-20527362 | Msa0061790:CDS | 40.0% | |
| AGCTAAGCTTGTATACCCTT+CGG | - | chr1_2:20527399-20527418 | None:intergenic | 40.0% | |
| ! | ATGAAGATGTCGGCGTATTT+TGG | + | chr1_2:20527594-20527613 | Msa0061790:CDS | 40.0% |
| !!! | TATTTTGGCCTGGAAGTTTC+AGG | + | chr1_2:20527609-20527628 | Msa0061790:CDS | 40.0% |
| TTTATCTGCCTGAAACTTCC+AGG | - | chr1_2:20527620-20527639 | None:intergenic | 40.0% | |
| ! | GTAGTAGATGTTTGTTGAGG+AGG | - | chr1_2:20527710-20527729 | None:intergenic | 40.0% |
| GAGCCTCTTTCACAATCTAT+TGG | - | chr1_2:20526095-20526114 | None:intergenic | 40.0% | |
| TACGTCCTCTCAAATGTTTG+TGG | - | chr1_2:20526796-20526815 | None:intergenic | 40.0% | |
| TTAGAAGTAAGCAGCCAAGT+AGG | + | chr1_2:20527023-20527042 | Msa0061790:CDS | 40.0% | |
| AGAAGTTGTAGCACTGTCTT+TGG | - | chr1_2:20527087-20527106 | None:intergenic | 40.0% | |
| ACTAAGGCAGACATTAATCC+AGG | + | chr1_2:20527116-20527135 | Msa0061790:CDS | 40.0% | |
| TCCTTCAAATCTTCATCGCT+CGG | - | chr1_2:20527176-20527195 | None:intergenic | 40.0% | |
| ! | GACACTAACAGTGAAGTACT+AGG | + | chr1_2:20527203-20527222 | Msa0061790:CDS | 40.0% |
| GAGAAAACTCTATGAATCGC+TGG | - | chr1_2:20527263-20527282 | None:intergenic | 40.0% | |
| ! | TTCTTTAGCTCACAAGCGTT+AGG | + | chr1_2:20527305-20527324 | Msa0061790:CDS | 40.0% |
| TCATAAAAGGGAGAGAACGA+TGG | + | chr1_2:20527343-20527362 | Msa0061790:CDS | 40.0% | |
| AGCTAAGCTTGTATACCCTT+CGG | - | chr1_2:20527399-20527418 | None:intergenic | 40.0% | |
| ! | ATGAAGATGTCGGCGTATTT+TGG | + | chr1_2:20527594-20527613 | Msa0061790:CDS | 40.0% |
| !!! | TATTTTGGCCTGGAAGTTTC+AGG | + | chr1_2:20527609-20527628 | Msa0061790:CDS | 40.0% |
| TTTATCTGCCTGAAACTTCC+AGG | - | chr1_2:20527620-20527639 | None:intergenic | 40.0% | |
| ! | GTAGTAGATGTTTGTTGAGG+AGG | - | chr1_2:20527710-20527729 | None:intergenic | 40.0% |
| ACTAAGGGACACCCTTGTAT+TGG | + | chr1_2:20526468-20526487 | Msa0061790:intron | 45.0% | |
| ATTTGAGAGGACGTATCGGA+AGG | + | chr1_2:20526801-20526820 | Msa0061790:intron | 45.0% | |
| AGGTCAAGGGAAATAGAACC+TGG | - | chr1_2:20527137-20527156 | None:intergenic | 45.0% | |
| GAAGTTGAGAGTCAGGTCAA+GGG | - | chr1_2:20527150-20527169 | None:intergenic | 45.0% | |
| TGAAGTTGAGAGTCAGGTCA+AGG | - | chr1_2:20527151-20527170 | None:intergenic | 45.0% | |
| TCGGATTGAAGTTGAGAGTC+AGG | - | chr1_2:20527157-20527176 | None:intergenic | 45.0% | |
| TCCGAGCGATGAAGATTTGA+AGG | + | chr1_2:20527172-20527191 | Msa0061790:CDS | 45.0% | |
| AACTCTATGAATCGCTGGTG+CGG | - | chr1_2:20527258-20527277 | None:intergenic | 45.0% | |
| ! | TTTAGCTCACAAGCGTTAGG+TGG | + | chr1_2:20527308-20527327 | Msa0061790:CDS | 45.0% |
| GAGTAGGGATGTTTACCGAA+GGG | + | chr1_2:20527381-20527400 | Msa0061790:CDS | 45.0% | |
| !! | ACGATGATGGCATGTGGTTT+TGG | - | chr1_2:20527487-20527506 | None:intergenic | 45.0% |
| ACTAAGGGACACCCTTGTAT+TGG | + | chr1_2:20526468-20526487 | Msa0061790:intron | 45.0% | |
| ATTTGAGAGGACGTATCGGA+AGG | + | chr1_2:20526801-20526820 | Msa0061790:intron | 45.0% | |
| AGGTCAAGGGAAATAGAACC+TGG | - | chr1_2:20527137-20527156 | None:intergenic | 45.0% | |
| GAAGTTGAGAGTCAGGTCAA+GGG | - | chr1_2:20527150-20527169 | None:intergenic | 45.0% | |
| TGAAGTTGAGAGTCAGGTCA+AGG | - | chr1_2:20527151-20527170 | None:intergenic | 45.0% | |
| TCGGATTGAAGTTGAGAGTC+AGG | - | chr1_2:20527157-20527176 | None:intergenic | 45.0% | |
| TCCGAGCGATGAAGATTTGA+AGG | + | chr1_2:20527172-20527191 | Msa0061790:CDS | 45.0% | |
| AACTCTATGAATCGCTGGTG+CGG | - | chr1_2:20527258-20527277 | None:intergenic | 45.0% | |
| ! | TTTAGCTCACAAGCGTTAGG+TGG | + | chr1_2:20527308-20527327 | Msa0061790:CDS | 45.0% |
| GAGTAGGGATGTTTACCGAA+GGG | + | chr1_2:20527381-20527400 | Msa0061790:CDS | 45.0% | |
| !! | ACGATGATGGCATGTGGTTT+TGG | - | chr1_2:20527487-20527506 | None:intergenic | 45.0% |
| CGAGTAGGGATGTTTACCGA+AGG | + | chr1_2:20527380-20527399 | Msa0061790:CDS | 50.0% | |
| !! | ATCAGCATCGACGACGATGA+TGG | - | chr1_2:20527500-20527519 | None:intergenic | 50.0% |
| ATCGTCGTCGATGCTGATGA+GGG | + | chr1_2:20527502-20527521 | Msa0061790:CDS | 50.0% | |
| CGAGTAGGGATGTTTACCGA+AGG | + | chr1_2:20527380-20527399 | Msa0061790:CDS | 50.0% | |
| !! | ATCAGCATCGACGACGATGA+TGG | - | chr1_2:20527500-20527519 | None:intergenic | 50.0% |
| ATCGTCGTCGATGCTGATGA+GGG | + | chr1_2:20527502-20527521 | Msa0061790:CDS | 50.0% | |
| AGTGGACAGACAATCGAGCG+TGG | + | chr1_2:20525820-20525839 | Msa0061790:intron | 55.0% | |
| CAAAGCGCGCTATGCGAGTA+GGG | + | chr1_2:20527366-20527385 | Msa0061790:CDS | 55.0% | |
| ! | TCGACGACGATGATGGCATG+TGG | - | chr1_2:20527493-20527512 | None:intergenic | 55.0% |
| CATCGTCGTCGATGCTGATG+AGG | + | chr1_2:20527501-20527520 | Msa0061790:CDS | 55.0% | |
| !!! | GATGTCGGCGTATTTTGGCC+TGG | + | chr1_2:20527599-20527618 | Msa0061790:CDS | 55.0% |
| AGTGGACAGACAATCGAGCG+TGG | + | chr1_2:20525820-20525839 | Msa0061790:intron | 55.0% | |
| CAAAGCGCGCTATGCGAGTA+GGG | + | chr1_2:20527366-20527385 | Msa0061790:CDS | 55.0% | |
| ! | TCGACGACGATGATGGCATG+TGG | - | chr1_2:20527493-20527512 | None:intergenic | 55.0% |
| CATCGTCGTCGATGCTGATG+AGG | + | chr1_2:20527501-20527520 | Msa0061790:CDS | 55.0% | |
| !!! | GATGTCGGCGTATTTTGGCC+TGG | + | chr1_2:20527599-20527618 | Msa0061790:CDS | 55.0% |
| GCAAAGCGCGCTATGCGAGT+AGG | + | chr1_2:20527365-20527384 | Msa0061790:CDS | 60.0% | |
| GCAAAGCGCGCTATGCGAGT+AGG | + | chr1_2:20527365-20527384 | Msa0061790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 20525750 | 20527866 | 20525750 | ID=Msa0061790;Name=Msa0061790 |
| chr1_2 | mRNA | 20525750 | 20527866 | 20525750 | ID=Msa0061790-mRNA-1;Parent=Msa0061790;Name=Msa0061790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0.5|0.5|1|1|2|109|268 |
| chr1_2 | exon | 20525750 | 20525756 | 20525750 | ID=Msa0061790-mRNA-1:exon:7731;Parent=Msa0061790-mRNA-1 |
| chr1_2 | exon | 20526958 | 20527866 | 20526958 | ID=Msa0061790-mRNA-1:exon:7732;Parent=Msa0061790-mRNA-1 |
| chr1_2 | CDS | 20525750 | 20525756 | 20525750 | ID=Msa0061790-mRNA-1:cds;Parent=Msa0061790-mRNA-1 |
| chr1_2 | CDS | 20526958 | 20527757 | 20526958 | ID=Msa0061790-mRNA-1:cds;Parent=Msa0061790-mRNA-1 |
| chr1_2 | three_prime_UTR | 20527758 | 20527866 | 20527758 | ID=Msa0061790-mRNA-1:three_prime_utr;Parent=Msa0061790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
