Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465170 | XP_013466645.1 | 93.023 | 258 | 11 | 2 | 1 | 258 | 1 | 251 | 1.42e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465170 | sp|Q39263|ZFP4_ARATH | 41.758 | 182 | 81 | 6 | 98 | 258 | 83 | 260 | 3.38e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465170 | A0A072VGF6 | 93.023 | 258 | 11 | 2 | 1 | 258 | 1 | 251 | 6.79e-175 | 491 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1465170 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061790 | Msa1465170 | 0.956327 | 3.829687e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465170 | MtrunA17_Chr1g0161901 | 93.023 | 258 | 11 | 2 | 1 | 258 | 1 | 251 | 1.31e-178 | 491 |
| Msa1465170 | MtrunA17_Chr8g0376021 | 51.751 | 257 | 84 | 8 | 2 | 258 | 1 | 217 | 7.40e-75 | 227 |
| Msa1465170 | MtrunA17_Chr3g0110091 | 40.157 | 254 | 134 | 6 | 5 | 258 | 3 | 238 | 1.71e-56 | 181 |
| Msa1465170 | MtrunA17_Chr5g0434121 | 43.985 | 266 | 104 | 11 | 6 | 258 | 4 | 237 | 3.47e-56 | 180 |
| Msa1465170 | MtrunA17_Chr2g0333741 | 66.234 | 77 | 21 | 2 | 98 | 169 | 81 | 157 | 3.47e-26 | 102 |
| Msa1465170 | MtrunA17_Chr1g0149811 | 38.356 | 146 | 71 | 2 | 43 | 169 | 35 | 180 | 1.66e-23 | 95.9 |
| Msa1465170 | MtrunA17_Chr4g0001081 | 58.108 | 74 | 19 | 3 | 98 | 169 | 67 | 130 | 6.91e-19 | 82.8 |
| Msa1465170 | MtrunA17_Chr1g0207691 | 38.889 | 126 | 59 | 4 | 98 | 219 | 64 | 175 | 1.17e-18 | 81.3 |
| Msa1465170 | MtrunA17_Chr3g0137111 | 43.103 | 116 | 45 | 5 | 69 | 169 | 49 | 158 | 3.31e-18 | 80.9 |
| Msa1465170 | MtrunA17_Chr4g0072571 | 36.719 | 128 | 63 | 4 | 98 | 223 | 45 | 156 | 1.57e-16 | 75.1 |
| Msa1465170 | MtrunA17_Chr4g0053691 | 36.364 | 143 | 66 | 7 | 90 | 229 | 57 | 177 | 1.21e-14 | 70.1 |
| Msa1465170 | MtrunA17_Chr7g0254221 | 52.830 | 53 | 23 | 2 | 82 | 134 | 19 | 69 | 1.12e-11 | 61.6 |
| Msa1465170 | MtrunA17_Chr7g0251581 | 69.697 | 33 | 10 | 0 | 98 | 130 | 39 | 71 | 2.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465170 | AT1G66140.1 | 41.758 | 182 | 81 | 6 | 98 | 258 | 83 | 260 | 3.43e-37 | 132 |
| Msa1465170 | AT1G24625.1 | 39.648 | 227 | 94 | 10 | 39 | 258 | 19 | 209 | 2.55e-32 | 118 |
| Msa1465170 | AT1G80730.1 | 57.955 | 88 | 21 | 3 | 98 | 169 | 66 | 153 | 1.09e-23 | 95.9 |
| Msa1465170 | AT5G10970.1 | 56.579 | 76 | 29 | 2 | 97 | 169 | 101 | 175 | 1.77e-21 | 90.9 |
| Msa1465170 | AT5G25160.1 | 55.263 | 76 | 30 | 2 | 98 | 169 | 59 | 134 | 7.29e-21 | 88.6 |
| Msa1465170 | AT5G57520.1 | 51.515 | 66 | 32 | 0 | 98 | 163 | 50 | 115 | 1.60e-15 | 72.0 |
| Msa1465170 | AT5G14010.1 | 47.945 | 73 | 27 | 1 | 94 | 155 | 32 | 104 | 2.40e-15 | 72.0 |
| Msa1465170 | AT5G01860.1 | 55.814 | 43 | 19 | 0 | 95 | 137 | 62 | 104 | 4.04e-11 | 61.6 |
| Msa1465170 | AT3G58070.1 | 55.769 | 52 | 20 | 1 | 82 | 133 | 76 | 124 | 7.81e-11 | 61.2 |
Find 70 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTTCCAAGTTCAAATT+TGG | 0.203450 | tig0044987:-2800 | Msa1465170:intergenic |
| AGAGAGAGGACAAATTATTA+TGG | 0.224175 | tig0044987:-769 | Msa1465170:intergenic |
| ATGAAGATGTCGGCGTATTT+TGG | 0.224650 | tig0044987:+3401 | Msa1465170:CDS |
| TTTCTCATGTTCATTCTCTA+TGG | 0.249793 | tig0044987:+3608 | Msa1465170:three_prime_UTR |
| GACATCAGAATGCTCATAAA+AGG | 0.253478 | tig0044987:+3137 | Msa1465170:CDS |
| GAGTATTCATCATGTTGATA+TGG | 0.280142 | tig0044987:-2778 | Msa1465170:intergenic |
| TTAGCTTCTTTACCTCTTCA+TGG | 0.299313 | tig0044987:+3220 | Msa1465170:CDS |
| TTCTCTATGGACATTCTCTA+TGG | 0.304572 | tig0044987:+3621 | Msa1465170:three_prime_UTR |
| AGAAGTTGTAGCACTGTCTT+TGG | 0.324664 | tig0044987:-2891 | None:intergenic |
| TATGCTACTACTTGAGAGTT+TGG | 0.330515 | tig0044987:-834 | None:intergenic |
| ACGATGATGGCATGTGGTTT+TGG | 0.333669 | tig0044987:-3291 | None:intergenic |
| TTTATCTGCCTGAAACTTCC+AGG | 0.347691 | tig0044987:-3424 | None:intergenic |
| GAGAGAGGACAAATTATTAT+GGG | 0.381602 | tig0044987:-768 | None:intergenic |
| ACAAATCAATCACTAGGAAA+TGG | 0.405309 | tig0044987:+618 | None:intergenic |
| CATATCCTGATCTTACTTTG+AGG | 0.427108 | tig0044987:+3536 | Msa1465170:CDS |
| TCCGAGCGATGAAGATTTGA+AGG | 0.428555 | tig0044987:+2979 | Msa1465170:CDS |
| TCCTTCAAATCTTCATCGCT+CGG | 0.432671 | tig0044987:-2980 | Msa1465170:intergenic |
| GAGAAAGAGGTAAGAAAAGT+GGG | 0.438056 | tig0044987:-739 | Msa1465170:intergenic |
| AGAGATAAGGAGAGAGGTAG+AGG | 0.445675 | tig0044987:-803 | Msa1465170:intergenic |
| AGAAAAGTGGGGATGGATGA+TGG | 0.445688 | tig0044987:-727 | Msa1465170:intergenic |
| AAATTTGAGAAAGATTGTTT+CGG | 0.446566 | tig0044987:+3355 | Msa1465170:CDS |
| CAATCACTAGGAAATGGAAA+TGG | 0.447864 | tig0044987:+624 | Msa1465170:five_prime_UTR |
| ATGGATAGAAACCTTGGAAC+TGG | 0.450498 | tig0044987:+643 | Msa1465170:five_prime_UTR |
| AACTTCTTCTTGTCTTACTA+AGG | 0.451364 | tig0044987:+2907 | Msa1465170:CDS |
| AGAGAAAGAGGTAAGAAAAG+TGG | 0.470456 | tig0044987:-740 | Msa1465170:intergenic |
| GAATACTCCAAATTTGAACT+TGG | 0.473476 | tig0044987:+2793 | Msa1465170:CDS |
| TCGGATTGAAGTTGAGAGTC+AGG | 0.475494 | tig0044987:-2961 | Msa1465170:intergenic |
| TTCTTTAGCTCACAAGCGTT+AGG | 0.479990 | tig0044987:+3112 | Msa1465170:CDS |
| CAAAGCGCGCTATGCGAGTA+GGG | 0.487145 | tig0044987:+3173 | Msa1465170:CDS |
| GTAGCATAATCACACTCAAC+TGG | 0.487934 | tig0044987:+849 | Msa1465170:five_prime_UTR |
| ACTAAGGCAGACATTAATCC+AGG | 0.488717 | tig0044987:+2923 | Msa1465170:CDS |
| AGCTAAGCTTGTATACCCTT+CGG | 0.491197 | tig0044987:-3203 | Msa1465170:intergenic |
| TCTTTCTCAAATTTCGCTGT+AGG | 0.497994 | tig0044987:-3346 | Msa1465170:intergenic |
| GTAGTAGATGTTTGTTGAGG+AGG | 0.505399 | tig0044987:-3514 | Msa1465170:intergenic |
| AGAGGTAAGAAAAGTGGGGA+TGG | 0.511923 | tig0044987:-734 | Msa1465170:intergenic |
| ATCAGCATCGACGACGATGA+TGG | 0.511996 | tig0044987:-3304 | Msa1465170:intergenic |
| TAAAGCCTCAAAGTAAGATC+AGG | 0.515851 | tig0044987:-3541 | Msa1465170:intergenic |
| ATGGAAATGGATAGAAACCT+TGG | 0.517705 | tig0044987:+637 | Msa1465170:five_prime_UTR |
| TCTCTTGTAATTATTGTAGG+AGG | 0.522769 | tig0044987:+3086 | Msa1465170:CDS |
| TGATTCTTGTAAGTATATGT+TGG | 0.525252 | tig0044987:-2855 | Msa1465170:intergenic |
| TTATGGGAAAGCAGAGAAAG+AGG | 0.527171 | tig0044987:-752 | Msa1465170:intergenic |
| GAAAGAGGGAACAAACTTGA+AGG | 0.531111 | tig0044987:-878 | Msa1465170:intergenic |
| GAGAAAACTCTATGAATCGC+TGG | 0.540223 | tig0044987:-3067 | Msa1465170:intergenic |
| GCAAAGCGCGCTATGCGAGT+AGG | 0.540707 | tig0044987:+3172 | Msa1465170:CDS |
| CATCGTCGTCGATGCTGATG+AGG | 0.540974 | tig0044987:+3308 | Msa1465170:CDS |
| AGGTCAAGGGAAATAGAACC+TGG | 0.542650 | tig0044987:-2941 | Msa1465170:intergenic |
| ACATCAGAATGCTCATAAAA+GGG | 0.543025 | tig0044987:+3138 | Msa1465170:CDS |
| AGTATATGTTGGAACCTACT+TGG | 0.544787 | tig0044987:-2844 | Msa1465170:intergenic |
| AACTCTATGAATCGCTGGTG+CGG | 0.556385 | tig0044987:-3062 | Msa1465170:intergenic |
| TCTATCAACAAACATTTGAG+AGG | 0.564315 | tig0044987:+2595 | Msa1465170:five_prime_UTR |
| ATCGTCGTCGATGCTGATGA+GGG | 0.568860 | tig0044987:+3309 | Msa1465170:CDS |
| TATGTAGTAGATGTTTGTTG+AGG | 0.576983 | tig0044987:-3517 | Msa1465170:intergenic |
| TTTAGCTCACAAGCGTTAGG+TGG | 0.582305 | tig0044987:+3115 | Msa1465170:CDS |
| TGAAGTTGAGAGTCAGGTCA+AGG | 0.584371 | tig0044987:-2955 | Msa1465170:intergenic |
| AAACATTTGAGAGGACGTAT+CGG | 0.590373 | tig0044987:+2604 | Msa1465170:five_prime_UTR |
| GAGGGAACAAACTTGAAGGT+AGG | 0.596435 | tig0044987:-874 | Msa1465170:intergenic |
| TTAGAAGTAAGCAGCCAAGT+AGG | 0.598009 | tig0044987:+2830 | Msa1465170:CDS |
| CGAGTAGGGATGTTTACCGA+AGG | 0.601367 | tig0044987:+3187 | Msa1465170:CDS |
| TTGGCAACAAATCAATCACT+AGG | 0.609537 | tig0044987:+612 | None:intergenic |
| TTGGAACTGGACAAAAGAAG+TGG | 0.609960 | tig0044987:+656 | Msa1465170:five_prime_UTR |
| GACACTAACAGTGAAGTACT+AGG | 0.613028 | tig0044987:+3010 | Msa1465170:CDS |
| AAAGAAGAAGAACCATGAAG+AGG | 0.622542 | tig0044987:-3232 | Msa1465170:intergenic |
| AGAAAGAGGTAAGAAAAGTG+GGG | 0.632707 | tig0044987:-738 | Msa1465170:intergenic |
| GAAGTTGAGAGTCAGGTCAA+GGG | 0.634039 | tig0044987:-2954 | Msa1465170:intergenic |
| TTTATGCATAATGAAGATGT+CGG | 0.651635 | tig0044987:+3391 | Msa1465170:CDS |
| ATTTGAGAGGACGTATCGGA+AGG | 0.656543 | tig0044987:+2608 | Msa1465170:five_prime_UTR |
| GAGTAGGGATGTTTACCGAA+GGG | 0.666419 | tig0044987:+3188 | Msa1465170:CDS |
| TCTTCATTATGCATAAACAT+CGG | 0.674163 | tig0044987:-3385 | Msa1465170:intergenic |
| TCATAAAAGGGAGAGAACGA+TGG | 0.677286 | tig0044987:+3150 | Msa1465170:CDS |
| TCGACGACGATGATGGCATG+TGG | 0.703332 | tig0044987:-3297 | Msa1465160:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTATTTATTTATTTTG+AGG | + | tig0044987:1114-1133 | Msa1465170:intron | 10.0% |
| !!! | TTTATTTTGTTTTAAATTTC+TGG | + | tig0044987:1151-1170 | Msa1465170:intron | 10.0% |
| !! | TTTATAAATTAGATCTAATA+AGG | + | tig0044987:1236-1255 | Msa1465170:intron | 10.0% |
| !!! | GTACAATTTTTAAATCAAAT+AGG | - | tig0044987:1488-1507 | Msa1465170:intergenic | 15.0% |
| !!! | TTTTGATAAATAGAAGTTTA+AGG | + | tig0044987:2439-2458 | Msa1465170:intron | 15.0% |
| !!! | TTTTAAAAAGCTCAATAAAT+TGG | + | tig0044987:2673-2692 | Msa1465170:intron | 15.0% |
| !!! | TTGTATCTTTAGTTTTTTTT+TGG | + | tig0044987:3570-3589 | Msa1465170:three_prime_UTR | 15.0% |
| !!! | TTTGGTAATAAAAAGAGATA+AGG | - | tig0044987:819-838 | Msa1465170:intergenic | 20.0% |
| !! | TTCTTTGATAAAAAGAAAGA+GGG | - | tig0044987:895-914 | Msa1465170:intergenic | 20.0% |
| !! | TTTCTTTGATAAAAAGAAAG+AGG | - | tig0044987:896-915 | Msa1465170:intergenic | 20.0% |
| !!! | TTGTTTTAAATTTCTGGAAA+TGG | + | tig0044987:1157-1176 | Msa1465170:intron | 20.0% |
| !!! | ATTTCAAAATCTCAACTTTT+TGG | - | tig0044987:1431-1450 | Msa1465170:intergenic | 20.0% |
| !!! | AGTTGAGATTTTGAAATTTA+TGG | + | tig0044987:1434-1453 | Msa1465170:intron | 20.0% |
| !!! | TAATTTCTTTTTCTACTCAT+AGG | + | tig0044987:1512-1531 | Msa1465170:intron | 20.0% |
| !!! | AATTTCTTTTTCTACTCATA+GGG | + | tig0044987:1513-1532 | Msa1465170:intron | 20.0% |
| !! | TTTCTATAATGCAATTTCTA+GGG | - | tig0044987:1674-1693 | Msa1465170:intergenic | 20.0% |
| !!! | TTTTCTATAATGCAATTTCT+AGG | - | tig0044987:1675-1694 | Msa1465170:intergenic | 20.0% |
| !! | AAAAATACAAAAGATGTTGT+CGG | + | tig0044987:1692-1711 | Msa1465170:intron | 20.0% |
| !! | AAATCCAAATCTAAAGAAAA+CGG | - | tig0044987:1755-1774 | Msa1465170:intergenic | 20.0% |
| !! | TATTGAAAATTGTAACATGA+TGG | + | tig0044987:2327-2346 | Msa1465170:intron | 20.0% |
| !!! | TAAAGAAAAAGGACATATTT+TGG | + | tig0044987:2511-2530 | Msa1465170:intron | 20.0% |
| !! | ATGCATTTAATCATTAATGT+AGG | + | tig0044987:2743-2762 | Msa1465170:intron | 20.0% |
| !!! | TTTTCTCTTGTAATTATTGT+AGG | + | tig0044987:3083-3102 | Msa1465170:CDS | 20.0% |
| !! | AAATTTGAGAAAGATTGTTT+CGG | + | tig0044987:3355-3374 | Msa1465170:CDS | 20.0% |
| ! | TGTTAACTAGAATTTCATTC+TGG | + | tig0044987:1084-1103 | Msa1465170:intron | 25.0% |
| ! | AATTTATAAACTCAAAGAGC+TGG | - | tig0044987:1226-1245 | Msa1465170:intergenic | 25.0% |
| !!! | AAGCATTTTTTTCAAACCAT+TGG | - | tig0044987:1311-1330 | Msa1465170:intergenic | 25.0% |
| !!! | CTTTTTGGTGATTTCATATA+AGG | - | tig0044987:1416-1435 | Msa1465170:intergenic | 25.0% |
| ! | GAAAATAAATTACAGCTCAT+AGG | + | tig0044987:2125-2144 | Msa1465170:intron | 25.0% |
| ! | TTGTAACATGATGGTAATTT+AGG | + | tig0044987:2336-2355 | Msa1465170:intron | 25.0% |
| ! | GAAAAGTCAAGTAAAGAAAA+AGG | + | tig0044987:2500-2519 | Msa1465170:intron | 25.0% |
| ! | TGATTCTTGTAAGTATATGT+TGG | - | tig0044987:2858-2877 | Msa1465170:intergenic | 25.0% |
| ! | TCTTCATTATGCATAAACAT+CGG | - | tig0044987:3388-3407 | Msa1465170:intergenic | 25.0% |
| ! | TTTATGCATAATGAAGATGT+CGG | + | tig0044987:3391-3410 | Msa1465170:CDS | 25.0% |
| GAGAGAGGACAAATTATTAT+GGG | - | tig0044987:771-790 | Msa1465170:intergenic | 30.0% | |
| AGAGAGAGGACAAATTATTA+TGG | - | tig0044987:772-791 | Msa1465170:intergenic | 30.0% | |
| ATAAAAAGAGATAAGGAGAG+AGG | - | tig0044987:812-831 | Msa1465170:intergenic | 30.0% | |
| ! | ATTTCTGGAAATGGTTTATG+TGG | + | tig0044987:1166-1185 | Msa1465170:intron | 30.0% |
| ! | TCATTACTAGAAAAGGTACA+AGG | - | tig0044987:1541-1560 | Msa1465170:intergenic | 30.0% |
| !! | TGTACCTTTTCTAGTAATGA+AGG | + | tig0044987:1541-1560 | Msa1465170:intron | 30.0% |
| !! | GTACCTTTTCTAGTAATGAA+GGG | + | tig0044987:1542-1561 | Msa1465170:intron | 30.0% |
| TGACTCAACTCAATAATAAG+TGG | + | tig0044987:1609-1628 | Msa1465170:intron | 30.0% | |
| ! | TTGTCCGTTTTCTTTAGATT+TGG | + | tig0044987:1748-1767 | Msa1465170:intron | 30.0% |
| TTACCAATAGATTGTGAAAG+AGG | + | tig0044987:1896-1915 | Msa1465170:intron | 30.0% | |
| AACTTATTTGTCACAGACTA+AGG | + | tig0044987:1961-1980 | Msa1465170:intron | 30.0% | |
| ACTTATTTGTCACAGACTAA+GGG | + | tig0044987:1962-1981 | Msa1465170:intron | 30.0% | |
| AGACTCTTGAAGATAGTTTA+TGG | + | tig0044987:2035-2054 | Msa1465170:intron | 30.0% | |
| TTTCATAAGTTATCCTAGAG+AGG | - | tig0044987:2109-2128 | Msa1465170:intergenic | 30.0% | |
| ! | GTTACAGTTAGGTTCTTTTT+GGG | - | tig0044987:2253-2272 | Msa1465170:intergenic | 30.0% |
| ! | TGTTACAGTTAGGTTCTTTT+TGG | - | tig0044987:2254-2273 | Msa1465170:intergenic | 30.0% |
| AACCTAACTGTAACAAACTA+AGG | + | tig0044987:2259-2278 | Msa1465170:intron | 30.0% | |
| ACCTAACTGTAACAAACTAA+GGG | + | tig0044987:2260-2279 | Msa1465170:intron | 30.0% | |
| GCAAGAAAAATCCAATACAA+GGG | - | tig0044987:2289-2308 | Msa1465170:intergenic | 30.0% | |
| AGCAAGAAAAATCCAATACA+AGG | - | tig0044987:2290-2309 | Msa1465170:intergenic | 30.0% | |
| TATAACAATGACATGAAGTG+AGG | - | tig0044987:2407-2426 | Msa1465170:intergenic | 30.0% | |
| TTGTCAAATGGAAAAGTTCT+GGG | - | tig0044987:2547-2566 | Msa1465170:intergenic | 30.0% | |
| TTTGTCAAATGGAAAAGTTC+TGG | - | tig0044987:2548-2567 | Msa1465170:intergenic | 30.0% | |
| ! | GTTGATAGAAGAAATACCTA+AGG | - | tig0044987:2584-2603 | Msa1465170:intergenic | 30.0% |
| TCTATCAACAAACATTTGAG+AGG | + | tig0044987:2595-2614 | Msa1465170:five_prime_UTR | 30.0% | |
| GAGTATTCATCATGTTGATA+TGG | - | tig0044987:2781-2800 | Msa1465170:intergenic | 30.0% | |
| GAATACTCCAAATTTGAACT+TGG | + | tig0044987:2793-2812 | Msa1465170:CDS | 30.0% | |
| AACTTCTTCTTGTCTTACTA+AGG | + | tig0044987:2907-2926 | Msa1465170:CDS | 30.0% | |
| TCTCTTGTAATTATTGTAGG+AGG | + | tig0044987:3086-3105 | Msa1465170:CDS | 30.0% | |
| ACATCAGAATGCTCATAAAA+GGG | + | tig0044987:3138-3157 | Msa1465170:CDS | 30.0% | |
| ! | TCTTCTTCTTTTCATTCTCT+TGG | + | tig0044987:3244-3263 | Msa1465170:CDS | 30.0% |
| ! | TATGTAGTAGATGTTTGTTG+AGG | - | tig0044987:3520-3539 | Msa1465170:intergenic | 30.0% |
| TTTCTCATGTTCATTCTCTA+TGG | + | tig0044987:3608-3627 | Msa1465170:three_prime_UTR | 30.0% | |
| CAATCACTAGGAAATGGAAA+TGG | + | tig0044987:624-643 | Msa1465170:five_prime_UTR | 35.0% | |
| ATGGAAATGGATAGAAACCT+TGG | + | tig0044987:637-656 | Msa1465170:five_prime_UTR | 35.0% | |
| AGAAAGAGGTAAGAAAAGTG+GGG | - | tig0044987:741-760 | Msa1465170:intergenic | 35.0% | |
| GAGAAAGAGGTAAGAAAAGT+GGG | - | tig0044987:742-761 | Msa1465170:intergenic | 35.0% | |
| AGAGAAAGAGGTAAGAAAAG+TGG | - | tig0044987:743-762 | Msa1465170:intergenic | 35.0% | |
| TATGCTACTACTTGAGAGTT+TGG | - | tig0044987:837-856 | Msa1465170:intergenic | 35.0% | |
| !! | GCAAGTTTGTAGTTGATAAG+TGG | - | tig0044987:942-961 | Msa1465170:intergenic | 35.0% |
| ! | AATGCTTTTGTTACTGCCAA+TGG | + | tig0044987:1292-1311 | Msa1465170:intron | 35.0% |
| ! | TGAACTGATGATAGTGATGT+TGG | + | tig0044987:1353-1372 | Msa1465170:intron | 35.0% |
| AGACCCTTCATTACTAGAAA+AGG | - | tig0044987:1548-1567 | Msa1465170:intergenic | 35.0% | |
| !! | TGCAATTTCTAGGGTTATAG+AGG | - | tig0044987:1665-1684 | Msa1465170:intergenic | 35.0% |
| ! | TCCTTAGAAGTTCAAGTTCA+TGG | + | tig0044987:1794-1813 | Msa1465170:intron | 35.0% |
| ACCATGAACTTGAACTTCTA+AGG | - | tig0044987:1798-1817 | Msa1465170:intergenic | 35.0% | |
| ! | TGCAAACTTGTTCTGAATGA+AGG | + | tig0044987:1833-1852 | Msa1465170:intron | 35.0% |
| ! | GCAAACTTGTTCTGAATGAA+GGG | + | tig0044987:1834-1853 | Msa1465170:intron | 35.0% |
| ! | CGTATTTCTATAACCTCTCT+AGG | + | tig0044987:2093-2112 | Msa1465170:intron | 35.0% |
| !! | TCCCTTAGTTTGTTACAGTT+AGG | - | tig0044987:2264-2283 | Msa1465170:intergenic | 35.0% |
| ! | ACTTTTCCATTTGACAAACC+TGG | + | tig0044987:2550-2569 | Msa1465170:intron | 35.0% |
| ATTAAGCCAGGTTTGTCAAA+TGG | - | tig0044987:2559-2578 | Msa1465170:intergenic | 35.0% | |
| AAACCTGGCTTAATTTCCTT+AGG | + | tig0044987:2565-2584 | Msa1465170:intron | 35.0% | |
| ATACCTAAGGAAATTAAGCC+AGG | - | tig0044987:2571-2590 | Msa1465170:intergenic | 35.0% | |
| AAACATTTGAGAGGACGTAT+CGG | + | tig0044987:2604-2623 | Msa1465170:five_prime_UTR | 35.0% | |
| TCAGCTTCCAAGTTCAAATT+TGG | - | tig0044987:2803-2822 | Msa1465170:intergenic | 35.0% | |
| AGTATATGTTGGAACCTACT+TGG | - | tig0044987:2847-2866 | Msa1465170:intergenic | 35.0% | |
| GACATCAGAATGCTCATAAA+AGG | + | tig0044987:3137-3156 | Msa1465170:CDS | 35.0% | |
| TTAGCTTCTTTACCTCTTCA+TGG | + | tig0044987:3220-3239 | Msa1465170:CDS | 35.0% | |
| AAAGAAGAAGAACCATGAAG+AGG | - | tig0044987:3235-3254 | Msa1465170:intergenic | 35.0% | |
| TCTTTCTCAAATTTCGCTGT+AGG | - | tig0044987:3349-3368 | Msa1465170:intergenic | 35.0% | |
| CATATCCTGATCTTACTTTG+AGG | + | tig0044987:3536-3555 | Msa1465170:CDS | 35.0% | |
| TAAAGCCTCAAAGTAAGATC+AGG | - | tig0044987:3544-3563 | Msa1465170:intergenic | 35.0% | |
| TTCTCTATGGACATTCTCTA+TGG | + | tig0044987:3621-3640 | Msa1465170:three_prime_UTR | 35.0% | |
| ATGGATAGAAACCTTGGAAC+TGG | + | tig0044987:643-662 | Msa1465170:five_prime_UTR | 40.0% | |
| ! | ACTTCTTTTGTCCAGTTCCA+AGG | - | tig0044987:657-676 | Msa1465170:intergenic | 40.0% |
| TTGGAACTGGACAAAAGAAG+TGG | + | tig0044987:656-675 | Msa1465170:five_prime_UTR | 40.0% | |
| TTATGGGAAAGCAGAGAAAG+AGG | - | tig0044987:755-774 | Msa1465170:intergenic | 40.0% | |
| GTAGCATAATCACACTCAAC+TGG | + | tig0044987:849-868 | Msa1465170:five_prime_UTR | 40.0% | |
| GAAAGAGGGAACAAACTTGA+AGG | - | tig0044987:881-900 | Msa1465170:intergenic | 40.0% | |
| AGAGCTGGCATACAGAAAAT+TGG | - | tig0044987:1211-1230 | Msa1465170:intergenic | 40.0% | |
| GAGCCTCTTTCACAATCTAT+TGG | - | tig0044987:1902-1921 | Msa1465170:intergenic | 40.0% | |
| GGCTTGACAAAAGAACAAGA+TGG | - | tig0044987:2386-2405 | Msa1465170:intergenic | 40.0% | |
| TTAGAAGTAAGCAGCCAAGT+AGG | + | tig0044987:2830-2849 | Msa1465170:CDS | 40.0% | |
| AGAAGTTGTAGCACTGTCTT+TGG | - | tig0044987:2894-2913 | Msa1465170:intergenic | 40.0% | |
| ACTAAGGCAGACATTAATCC+AGG | + | tig0044987:2923-2942 | Msa1465170:CDS | 40.0% | |
| TCCTTCAAATCTTCATCGCT+CGG | - | tig0044987:2983-3002 | Msa1465170:intergenic | 40.0% | |
| ! | GACACTAACAGTGAAGTACT+AGG | + | tig0044987:3010-3029 | Msa1465170:CDS | 40.0% |
| GAGAAAACTCTATGAATCGC+TGG | - | tig0044987:3070-3089 | Msa1465170:intergenic | 40.0% | |
| ! | TTCTTTAGCTCACAAGCGTT+AGG | + | tig0044987:3112-3131 | Msa1465170:CDS | 40.0% |
| TCATAAAAGGGAGAGAACGA+TGG | + | tig0044987:3150-3169 | Msa1465170:CDS | 40.0% | |
| AGCTAAGCTTGTATACCCTT+CGG | - | tig0044987:3206-3225 | Msa1465170:intergenic | 40.0% | |
| ! | ATGAAGATGTCGGCGTATTT+TGG | + | tig0044987:3401-3420 | Msa1465170:CDS | 40.0% |
| !!! | TATTTTGGCCTGGAAGTTTC+AGG | + | tig0044987:3416-3435 | Msa1465170:CDS | 40.0% |
| TTTATCTGCCTGAAACTTCC+AGG | - | tig0044987:3427-3446 | Msa1465170:intergenic | 40.0% | |
| ! | GTAGTAGATGTTTGTTGAGG+AGG | - | tig0044987:3517-3536 | Msa1465170:intergenic | 40.0% |
| AGAAAAGTGGGGATGGATGA+TGG | - | tig0044987:730-749 | Msa1465170:intergenic | 45.0% | |
| AGAGGTAAGAAAAGTGGGGA+TGG | - | tig0044987:737-756 | Msa1465170:intergenic | 45.0% | |
| AGAGATAAGGAGAGAGGTAG+AGG | - | tig0044987:806-825 | Msa1465170:intergenic | 45.0% | |
| GAGGGAACAAACTTGAAGGT+AGG | - | tig0044987:877-896 | Msa1465170:intergenic | 45.0% | |
| ACTAAGGGACACCCTTGTAT+TGG | + | tig0044987:2275-2294 | Msa1465170:intron | 45.0% | |
| ATTTGAGAGGACGTATCGGA+AGG | + | tig0044987:2608-2627 | Msa1465170:five_prime_UTR | 45.0% | |
| AGGTCAAGGGAAATAGAACC+TGG | - | tig0044987:2944-2963 | Msa1465170:intergenic | 45.0% | |
| GAAGTTGAGAGTCAGGTCAA+GGG | - | tig0044987:2957-2976 | Msa1465170:intergenic | 45.0% | |
| TGAAGTTGAGAGTCAGGTCA+AGG | - | tig0044987:2958-2977 | Msa1465170:intergenic | 45.0% | |
| TCGGATTGAAGTTGAGAGTC+AGG | - | tig0044987:2964-2983 | Msa1465170:intergenic | 45.0% | |
| TCCGAGCGATGAAGATTTGA+AGG | + | tig0044987:2979-2998 | Msa1465170:CDS | 45.0% | |
| AACTCTATGAATCGCTGGTG+CGG | - | tig0044987:3065-3084 | Msa1465170:intergenic | 45.0% | |
| ! | TTTAGCTCACAAGCGTTAGG+TGG | + | tig0044987:3115-3134 | Msa1465170:CDS | 45.0% |
| GAGTAGGGATGTTTACCGAA+GGG | + | tig0044987:3188-3207 | Msa1465170:CDS | 45.0% | |
| !! | ACGATGATGGCATGTGGTTT+TGG | - | tig0044987:3294-3313 | Msa1465170:intergenic | 45.0% |
| AGGTAGAGAGAGAGAGAGAG+AGG | - | tig0044987:786-805 | Msa1465170:intergenic | 50.0% | |
| CGAGTAGGGATGTTTACCGA+AGG | + | tig0044987:3187-3206 | Msa1465170:CDS | 50.0% | |
| !! | ATCAGCATCGACGACGATGA+TGG | - | tig0044987:3307-3326 | Msa1465170:intergenic | 50.0% |
| ATCGTCGTCGATGCTGATGA+GGG | + | tig0044987:3309-3328 | Msa1465170:CDS | 50.0% | |
| AGTGGACAGACAATCGAGCG+TGG | + | tig0044987:1627-1646 | Msa1465170:intron | 55.0% | |
| CAAAGCGCGCTATGCGAGTA+GGG | + | tig0044987:3173-3192 | Msa1465170:CDS | 55.0% | |
| ! | TCGACGACGATGATGGCATG+TGG | - | tig0044987:3300-3319 | Msa1465170:intergenic | 55.0% |
| CATCGTCGTCGATGCTGATG+AGG | + | tig0044987:3308-3327 | Msa1465170:CDS | 55.0% | |
| !!! | GATGTCGGCGTATTTTGGCC+TGG | + | tig0044987:3406-3425 | Msa1465170:CDS | 55.0% |
| GCAAAGCGCGCTATGCGAGT+AGG | + | tig0044987:3172-3191 | Msa1465170:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044987 | gene | 620 | 3729 | 620 | ID=Msa1465170;Name=Msa1465170 |
| tig0044987 | mRNA | 620 | 3729 | 620 | ID=Msa1465170-mRNA-1;Parent=Msa1465170;Name=Msa1465170-mRNA-1;_AED=0.28;_eAED=0.28;_QI=371|1|1|1|0|0.33|3|165|258 |
| tig0044987 | exon | 620 | 924 | 620 | ID=Msa1465170-mRNA-1:exon:24711;Parent=Msa1465170-mRNA-1 |
| tig0044987 | exon | 2587 | 2629 | 2587 | ID=Msa1465170-mRNA-1:exon:24712;Parent=Msa1465170-mRNA-1 |
| tig0044987 | exon | 2765 | 3729 | 2765 | ID=Msa1465170-mRNA-1:exon:24713;Parent=Msa1465170-mRNA-1 |
| tig0044987 | five_prime_UTR | 620 | 924 | 620 | ID=Msa1465170-mRNA-1:five_prime_utr;Parent=Msa1465170-mRNA-1 |
| tig0044987 | five_prime_UTR | 2587 | 2629 | 2587 | ID=Msa1465170-mRNA-1:five_prime_utr;Parent=Msa1465170-mRNA-1 |
| tig0044987 | five_prime_UTR | 2765 | 2787 | 2765 | ID=Msa1465170-mRNA-1:five_prime_utr;Parent=Msa1465170-mRNA-1 |
| tig0044987 | CDS | 2788 | 3564 | 2788 | ID=Msa1465170-mRNA-1:cds;Parent=Msa1465170-mRNA-1 |
| tig0044987 | three_prime_UTR | 3565 | 3729 | 3565 | ID=Msa1465170-mRNA-1:three_prime_utr;Parent=Msa1465170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
