AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063400 MtrunA17_Chr8g0370511 74.222 225 46 3 1 213 860 1084 2.58e-108 334
Msa0063400 MtrunA17_Chr8g0338981 61.509 265 50 4 1 213 859 1123 2.04e-98 308
Msa0063400 MtrunA17_Chr8g0339011 66.094 233 59 3 1 213 855 1087 9.15e-97 303
Msa0063400 MtrunA17_Chr8g0338901 62.500 256 53 4 1 213 882 1137 1.40e-96 304
Msa0063400 MtrunA17_Chr5g0414761 60.837 263 51 6 1 212 647 908 1.58e-94 295
Msa0063400 MtrunA17_Chr8g0339031 65.929 226 64 4 1 213 866 1091 5.69e-91 288
Msa0063400 MtrunA17_Chr8g0339021 68.056 216 64 3 1 211 850 1065 1.59e-88 281
Msa0063400 MtrunA17_Chr3g0085531 51.246 281 67 5 1 213 60 338 8.05e-86 257
Msa0063400 MtrunA17_Chr2g0296451 63.810 210 50 4 6 213 386 571 9.79e-83 256
Msa0063400 MtrunA17_Chr5g0420341 74.157 178 43 1 1 175 861 1038 2.04e-81 261
Msa0063400 MtrunA17_Chr3g0085731 52.249 289 62 7 1 213 867 1155 2.83e-81 262
Msa0063400 MtrunA17_Chr7g0223531 61.644 219 78 4 1 213 875 1093 1.54e-80 259
Msa0063400 MtrunA17_Chr8g0338931 50.741 270 66 5 11 213 10 279 3.59e-77 233
Msa0063400 MtrunA17_Chr5g0420331 75.776 161 36 1 1 158 861 1021 4.19e-76 247
Msa0063400 MtrunA17_Chr5g0430541 53.586 237 77 4 7 210 376 612 1.18e-74 236
Msa0063400 MtrunA17_Chr3g0114381 58.947 190 74 2 1 186 94 283 1.25e-70 217
Msa0063400 MtrunA17_Chr8g0338841 54.589 207 83 4 7 211 312 509 2.32e-64 207
Msa0063400 MtrunA17_Chr8g0338881 67.320 153 45 3 1 148 889 1041 1.74e-62 209
Msa0063400 MtrunA17_Chr8g0352221 57.592 191 76 3 1 186 775 965 2.46e-62 209
Msa0063400 MtrunA17_Chr8g0338801 45.902 244 73 5 25 210 85 327 2.28e-60 192
Msa0063400 MtrunA17_Chr8g0352211 68.310 142 44 1 8 148 799 940 8.11e-59 199
Msa0063400 MtrunA17_Chr8g0343781 71.605 81 23 0 55 135 1 81 1.56e-33 115
Msa0063400 MtrunA17_Chr4g0005851 38.983 177 101 4 8 182 914 1085 1.02e-32 124
Msa0063400 MtrunA17_Chr4g0005591 41.212 165 88 4 1 161 946 1105 6.66e-32 122
Msa0063400 MtrunA17_Chr6g0455131 44.118 136 75 1 6 140 970 1105 8.74e-32 121
Msa0063400 MtrunA17_Chr3g0135511 40.876 137 79 2 16 151 1 136 2.99e-31 112
Msa0063400 MtrunA17_Chr6g0454961 39.333 150 90 1 6 154 913 1062 3.04e-31 120
Msa0063400 MtrunA17_Chr4g0005871 37.968 187 103 6 1 182 994 1172 4.81e-31 119
Msa0063400 MtrunA17_Chr3g0135571 40.876 137 79 2 16 151 1 136 5.57e-31 112
Msa0063400 MtrunA17_Chr4g0014821 43.548 124 68 1 25 148 7 128 1.47e-30 110
Msa0063400 MtrunA17_Chr4g0009041 42.188 128 74 0 24 151 1395 1522 1.70e-30 118
Msa0063400 MtrunA17_Chr7g0257531 39.726 146 86 2 8 152 528 672 7.86e-30 115
Msa0063400 MtrunA17_Chr4g0005891 40.789 152 85 3 1 148 918 1068 8.55e-30 116
Msa0063400 MtrunA17_Chr4g0009401 36.111 180 107 2 17 188 1381 1560 2.01e-29 115
Msa0063400 MtrunA17_Chr3g0135541 40.845 142 81 3 12 151 148 288 2.13e-29 111
Msa0063400 MtrunA17_Chr6g0455211 40.816 147 85 2 6 151 911 1056 1.32e-28 112
Msa0063400 MtrunA17_Chr6g0454851 39.437 142 84 2 8 148 971 1111 1.74e-28 112
Msa0063400 MtrunA17_Chr4g0009361 44.538 119 65 1 22 139 400 518 2.30e-28 111
Msa0063400 MtrunA17_Chr6g0455551 39.695 131 79 0 24 154 980 1110 4.45e-28 111
Msa0063400 MtrunA17_Chr4g0009141 42.446 139 79 1 17 154 1399 1537 5.11e-28 110
Msa0063400 MtrunA17_Chr7g0234901 41.667 144 81 3 6 148 403 544 5.43e-28 110
Msa0063400 MtrunA17_Chr6g0455191 44.444 117 64 1 24 140 1213 1328 6.52e-28 110
Msa0063400 MtrunA17_Chr4g0009241 34.857 175 106 2 22 188 1408 1582 9.16e-28 110
Msa0063400 MtrunA17_Chr7g0255681 41.379 145 82 3 6 149 1895 2037 1.23e-27 110
Msa0063400 MtrunA17_Chr6g0454911 40.299 134 78 2 8 140 106 238 2.03e-27 105
Msa0063400 MtrunA17_Chr6g0455221 35.329 167 100 3 12 177 988 1147 2.08e-27 109
Msa0063400 MtrunA17_Chr6g0454971 43.284 134 74 2 8 140 911 1043 2.59e-27 108
Msa0063400 MtrunA17_Chr6g0454951 40.690 145 84 2 8 151 965 1108 5.07e-27 108
Msa0063400 MtrunA17_Chr4g0009171 39.568 139 84 0 10 148 1598 1736 5.31e-27 108
Msa0063400 MtrunA17_Chr4g0009101 38.000 150 89 2 1 148 1400 1547 1.09e-26 107
Msa0063400 MtrunA17_Chr6g0455251 43.590 117 65 1 24 140 1010 1125 1.45e-26 106
Msa0063400 MtrunA17_Chr6g0454821 44.068 118 66 0 34 151 947 1064 2.64e-26 105
Msa0063400 MtrunA17_Chr4g0009301 42.188 128 72 2 22 148 1425 1551 2.29e-25 103
Msa0063400 MtrunA17_Chr4g0009011 40.945 127 73 1 22 148 175 299 6.06e-25 100
Msa0063400 MtrunA17_Chr4g0010711 38.462 130 78 2 24 152 1405 1533 8.08e-24 99.0
Msa0063400 MtrunA17_Chr5g0411061 64.000 75 18 2 140 213 6 72 7.35e-22 85.1
Msa0063400 MtrunA17_Chr4g0009211 45.556 90 49 0 55 144 6 95 8.21e-21 84.7
Msa0063400 MtrunA17_Chr6g0454831 33.784 148 96 2 8 154 886 1032 1.23e-20 89.7
Msa0063400 MtrunA17_Chr4g0008981 40.196 102 61 0 55 156 6 107 2.19e-20 84.0
Msa0063400 MtrunA17_Chr6g0455031 37.405 131 67 4 23 140 904 1032 2.11e-19 86.3
Msa0063400 MtrunA17_Chr6g0454861 44.444 81 45 0 60 140 2 82 7.90e-19 78.6
Msa0063400 MtrunA17_Chr6g0454881 34.831 89 57 1 80 168 1 88 2.54e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 191 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAGACCTAAACAATTT+AGG 0.123384 1_2:+23828154 None:intergenic
CGAAAGATTACTAAGTTTAT+TGG 0.139906 1_2:-23828511 Msa0063400:five_prime_UTR
GTGAAAACTCTCATCCTTTC+TGG 0.163898 1_2:-23825549 Msa0063400:five_prime_UTR
CTCACTTTATAGACCTCTTT+TGG 0.181849 1_2:+23825576 None:intergenic
CGAGTGACAATTATCCTTCT+TGG 0.236516 1_2:-23823822 Msa0063400:CDS
CTGTGTCTTGCTTGTAAATC+TGG 0.244847 1_2:+23823632 None:intergenic
GTTGACCTTACCGGAGATTA+TGG 0.248307 1_2:-23826060 Msa0063400:five_prime_UTR
GTTGGGATGCCAACAATTTC+AGG 0.249180 1_2:-23828857 None:intergenic
TTCCAGACCTAAACAATTTA+GGG 0.264525 1_2:+23828155 None:intergenic
TCAAGAAAAGTTTGTATGAT+AGG 0.276377 1_2:-23828481 Msa0063400:five_prime_UTR
AAAGGTGTAGTATCAAATTT+AGG 0.288020 1_2:-23823583 Msa0063400:CDS
AAGTTTGTATGATAGGGATA+TGG 0.290365 1_2:-23828474 Msa0063400:five_prime_UTR
AAATATTACATACACATAAA+AGG 0.297327 1_2:+23823206 None:intergenic
ATCGATCAATCTCAATTGTT+TGG 0.298187 1_2:+23826029 None:intergenic
GGATGTAGAGAGTAATAATA+TGG 0.305324 1_2:-23825265 Msa0063400:five_prime_UTR
ATAAAAGGAAATTCCATATT+AGG 0.313964 1_2:+23823221 None:intergenic
GACATATGCTGTTTCTTCAT+TGG 0.319378 1_2:-23827776 Msa0063400:five_prime_UTR
TTTCAAAACTTAGATGTGTT+TGG 0.324901 1_2:-23825215 Msa0063400:five_prime_UTR
GTGGAGATATTTGTAGCTAT+TGG 0.328852 1_2:-23823547 Msa0063400:CDS
TTACCTCGTGTTTCTCTGTT+TGG 0.330380 1_2:-23825315 Msa0063400:five_prime_UTR
TGTGGACTTCATGCTGATAT+TGG 0.330866 1_2:-23827716 Msa0063400:five_prime_UTR
TTGTTTGATGATTGACAAAT+TGG 0.334860 1_2:-23825526 Msa0063400:five_prime_UTR
GTGCAAACCCTAAATTGTTT+AGG 0.338016 1_2:-23828162 Msa0063400:five_prime_UTR
ACGCCTTCTCATTTCACTTA+AGG 0.338280 1_2:-23828104 Msa0063400:five_prime_UTR
GCCCGCATATTGTCCTAATA+TGG 0.339555 1_2:-23823234 Msa0063400:three_prime_UTR
CTTGATGGTGTTGACCTTAC+CGG 0.340487 1_2:-23826069 Msa0063400:five_prime_UTR
TTCGGATCTACTGAAAATAA+AGG 0.343229 1_2:-23828299 Msa0063400:five_prime_UTR
ATGAGGTTCTTAAAACTTGA+TGG 0.346773 1_2:-23826084 Msa0063400:five_prime_UTR
CTCTCAATCTTAGTCATTCT+AGG 0.353057 1_2:-23825755 Msa0063400:five_prime_UTR
ATAGTCATGTTAAACAAGTA+TGG 0.354685 1_2:-23825933 Msa0063400:five_prime_UTR
TATACCCAATGACTTTGATC+TGG 0.356340 1_2:-23825983 Msa0063400:five_prime_UTR
TTCCTTCTCTCATTCAGTCT+TGG 0.358601 1_2:-23825359 Msa0063400:five_prime_UTR
ATATGGGGAATGGGTGGATC+CGG 0.362313 1_2:-23828457 Msa0063400:five_prime_UTR
AACCCTAAATTGTTTAGGTC+TGG 0.363399 1_2:-23828157 Msa0063400:five_prime_UTR
GATGGTTCTATTCTCATATC+AGG 0.368964 1_2:+23823376 None:intergenic
TTTACAACAACAACTTCTTT+CGG 0.370037 1_2:-23828317 Msa0063400:five_prime_UTR
TCTATTACTGAATTTCCAAT+TGG 0.371023 1_2:-23828550 Msa0063400:five_prime_UTR
GATTCGATTGTAAATAGCTT+TGG 0.374588 1_2:+23828420 None:intergenic
ACTAGTTCACCTTCACTCCT+TGG 0.377299 1_2:+23828622 None:intergenic
ATCTGTTGCACTTGATTGTT+GGG 0.379825 1_2:+23827854 None:intergenic
AAGGAAAGAATCACTAGAAT+TGG 0.379898 1_2:+23823846 None:intergenic
TTTGATCTTACTATTGAATA+GGG 0.385235 1_2:+23825435 None:intergenic
TGCATTTCTACTTCATGTAA+TGG 0.385541 1_2:+23823454 None:intergenic
TCCTTGAGATCACTTGTGAT+TGG 0.386458 1_2:-23825074 Msa0063400:five_prime_UTR
TGTCGTTTAATGATGAAGAT+TGG 0.389791 1_2:-23823606 Msa0063400:CDS
TGGACATGGGTTGACTGTTA+AGG 0.392719 1_2:-23823527 Msa0063400:CDS
GATGTTACTGAGATACTTAA+TGG 0.392764 1_2:-23827740 Msa0063400:five_prime_UTR
TGCATTGTCTTTAGTTTCCA+TGG 0.395515 1_2:-23825286 Msa0063400:five_prime_UTR
GGACTCCTTTGCGTCCATTT+CGG 0.396759 1_2:+23828060 None:intergenic
AAGATCGAGAAAAGACTTCA+TGG 0.405394 1_2:-23828244 Msa0063400:five_prime_UTR
TTTGGTAACTTCGAAAAGTC+GGG 0.408192 1_2:+23825717 None:intergenic
AACAATTGAGATTGATCGAT+TGG 0.411530 1_2:-23826026 Msa0063400:five_prime_UTR
TTTGTGATACTAATAGTAAT+GGG 0.411547 1_2:-23828348 Msa0063400:five_prime_UTR
ATTCTATTTGTCGCTGGTAA+TGG 0.416180 1_2:+23823334 None:intergenic
ATATCTCTATGTGGATATGA+AGG 0.417432 1_2:-23825399 Msa0063400:five_prime_UTR
CACTGGCTCTCGAAATCCTT+GGG 0.417439 1_2:-23827940 Msa0063400:five_prime_UTR
CTAGTTCACCTTCACTCCTT+GGG 0.417543 1_2:+23828623 None:intergenic
ATTTCCCAGATCAAAGTCAT+TGG 0.418033 1_2:+23825978 None:intergenic
AAGATACATAGCATCGCATT+GGG 0.418718 1_2:-23828274 Msa0063400:five_prime_UTR
AAGGAACGATTTGAGATTTG+TGG 0.428653 1_2:+23825092 None:intergenic
GGAAGTTCCCATGATTCTCT+TGG 0.432490 1_2:-23825047 Msa0063400:CDS
CAATTTAGGGTTTGCACACA+GGG 0.440906 1_2:+23828168 None:intergenic
ACTCTGATTGCAGTAAATAC+TGG 0.441284 1_2:-23825471 Msa0063400:five_prime_UTR
AGTTTGTATGATAGGGATAT+GGG 0.443651 1_2:-23828473 Msa0063400:five_prime_UTR
GGAAGAAGATATATTGCAAA+TGG 0.444971 1_2:-23825505 Msa0063400:five_prime_UTR
CTATTACTGAATTTCCAATT+GGG 0.446063 1_2:-23828549 Msa0063400:five_prime_UTR
TACAAGATTTGCAAAGAGAG+TGG 0.449914 1_2:-23823308 Msa0063400:CDS
TACTGAATTTCCAATTGGGT+TGG 0.450007 1_2:-23828545 Msa0063400:five_prime_UTR
CCTCGTGTTTCTCTGTTTGG+TGG 0.452277 1_2:-23825312 Msa0063400:five_prime_UTR
GTAGTATCAAATTTAGGAGT+TGG 0.452903 1_2:-23823577 Msa0063400:CDS
TTTAGAAGATTATACACAAA+AGG 0.456152 1_2:-23827810 Msa0063400:five_prime_UTR
TTGAAGGACTGTACAAGTCT+TGG 0.460419 1_2:-23825606 Msa0063400:five_prime_UTR
TCCGAGGTGCACACGTCCAT+TGG 0.464299 1_2:-23825657 Msa0063400:five_prime_UTR
CCATCACTTGTTGTCAAGAA+TGG 0.465907 1_2:-23823358 Msa0063400:CDS
TGTCTTCACAATGACCGAAA+TGG 0.467169 1_2:-23828074 Msa0063400:five_prime_UTR
CAAGAAAAGTTTGTATGATA+GGG 0.467560 1_2:-23828480 Msa0063400:five_prime_UTR
GTCATTGGGTATAAAGTTGA+AGG 0.475631 1_2:+23825993 None:intergenic
GTAAAGATTCTATTTGTCGC+TGG 0.478244 1_2:+23823328 None:intergenic
ATACCCAATGACTTTGATCT+GGG 0.479768 1_2:-23825982 Msa0063400:five_prime_UTR
GAAAGTTCAGCAAAAGAGCC+TGG 0.479820 1_2:-23827593 Msa0063400:five_prime_UTR
GTCATTATTATTATTACCCA+AGG 0.480729 1_2:-23828639 Msa0063400:five_prime_UTR
TATCTGTTGCACTTGATTGT+TGG 0.482017 1_2:+23827853 None:intergenic
AGATCACTTGTGATTGGAAT+GGG 0.482136 1_2:-23825068 Msa0063400:exon
TCTATTCTCATATCAGGTGA+TGG 0.486522 1_2:+23823382 None:intergenic
TTTCCCAGATCAAAGTCATT+GGG 0.487954 1_2:+23825979 None:intergenic
ATTTGGTAACTTCGAAAAGT+CGG 0.488296 1_2:+23825716 None:intergenic
GAAAAGACTTCATGGACAAA+AGG 0.491423 1_2:-23828236 Msa0063400:five_prime_UTR
AGCTATTCCCAAGAGAATCA+TGG 0.491492 1_2:+23825039 None:intergenic
GAAGTTCCCATGATTCTCTT+GGG 0.491801 1_2:-23825046 Msa0063400:CDS
CTGAGAGGACGGAATAAGAA+TGG 0.492779 1_2:-23827907 Msa0063400:five_prime_UTR
ACGCGGGATTCCAACCCAAT+TGG 0.493042 1_2:+23828535 None:intergenic
CGAATCCATAGTAAATTCAA+TGG 0.495356 1_2:-23828403 Msa0063400:five_prime_UTR
ACCATCATCTAATGTGAAAA+CGG 0.496369 1_2:-23823431 Msa0063400:CDS
TATGGGGAATGGGTGGATCC+GGG 0.497683 1_2:-23828456 Msa0063400:five_prime_UTR
AGAAGGTCCTTCACATGTAT+AGG 0.498537 1_2:+23823795 None:intergenic
TGATGTGAACTTTACTGAGT+TGG 0.498749 1_2:-23825132 Msa0063400:five_prime_UTR
GAGCGCAGCCTCATAAAAGT+TGG 0.500888 1_2:-23827677 Msa0063400:five_prime_UTR
ACAATTTAGGGTTTGCACAC+AGG 0.501998 1_2:+23828167 None:intergenic
TACTGCAATCAGAGTTGTCA+AGG 0.502909 1_2:+23825479 None:intergenic
CGAGGTAAGGAATTTCTAGT+TGG 0.503763 1_2:+23825330 None:intergenic
TTTCATTTCATGGAAAGCAT+TGG 0.504934 1_2:+23826110 None:intergenic
TATAGAAAAGCTAATTATGA+AGG 0.506723 1_2:-23825694 Msa0063400:five_prime_UTR
GTTTGTGATACTAATAGTAA+TGG 0.510584 1_2:-23828349 Msa0063400:five_prime_UTR
ACAAGTATGGAAGGAAACTA+AGG 0.510775 1_2:-23825920 Msa0063400:intron
ACAAGATTTGCAAAGAGAGT+GGG 0.511470 1_2:-23823307 Msa0063400:CDS
TATGATAGGGATATGGGGAA+TGG 0.512766 1_2:-23828467 Msa0063400:five_prime_UTR
AAACAGAGAAACACGAGGTA+AGG 0.515760 1_2:+23825317 None:intergenic
TCTTGGGAATAGCTTAGCAC+AGG 0.521556 1_2:-23825030 Msa0063400:intron
ATTATTACTCTCTACATCCA+TGG 0.522329 1_2:+23825269 None:intergenic
CCACTGGCTCTCGAAATCCT+TGG 0.524166 1_2:-23827941 Msa0063400:five_prime_UTR
CAAGATACATAGCATCGCAT+TGG 0.525867 1_2:-23828275 Msa0063400:five_prime_UTR
AACCACAATCGGCGCTTCCC+AGG 0.525919 1_2:+23827575 None:intergenic
TTATGAGGCTGCGCTCTATG+AGG 0.526300 1_2:+23827684 None:intergenic
AATCACTATCCTCAGGCACT+TGG 0.532911 1_2:+23823764 None:intergenic
ACTGAGATACTTAATGGTTG+TGG 0.534078 1_2:-23827734 Msa0063400:five_prime_UTR
TTTGAAAGGATGGTAAGCAT+TGG 0.535327 1_2:+23825231 None:intergenic
CATCTTCATGAAACCACAAT+CGG 0.536612 1_2:+23827564 None:intergenic
GACATGGGAAGATCAATTGT+TGG 0.537324 1_2:-23827617 Msa0063400:five_prime_UTR
GATAGTGATTGTTGCATGAA+AGG 0.537456 1_2:-23823751 Msa0063400:CDS
GCTATTCCCAAGAGAATCAT+GGG 0.538515 1_2:+23825040 None:intergenic
TCCAATCACAAGTGATCTCA+AGG 0.538768 1_2:+23825073 None:intergenic
CTTAGTAATCTTTCGCACGC+GGG 0.540641 1_2:+23828519 None:intergenic
TAGGGAGGATGAACAATGCA+TGG 0.546808 1_2:-23823171 Msa0063400:three_prime_UTR
TATATCCATAATCTCCGGTA+AGG 0.549732 1_2:+23826055 None:intergenic
ATAGGGATATGGGGAATGGG+TGG 0.550475 1_2:-23828463 Msa0063400:five_prime_UTR
TCTTGGCAATCTCCCAAAAG+AGG 0.552555 1_2:-23825589 Msa0063400:five_prime_UTR
GTGGTTTCATGAAGATGCGC+TGG 0.553647 1_2:-23827558 Msa0063400:five_prime_UTR
GAGATCACTTGTGATTGGAA+TGG 0.554121 1_2:-23825069 Msa0063400:exon
CAGGGAACAGAAAATGTTGA+GGG 0.556099 1_2:-23826177 Msa0063400:five_prime_UTR
ATGATAGGGATATGGGGAAT+GGG 0.559929 1_2:-23828466 Msa0063400:five_prime_UTR
GGAAATATATCCATAATCTC+CGG 0.560589 1_2:+23826050 None:intergenic
TATTATTACCCAAGGAGTGA+AGG 0.561091 1_2:-23828631 Msa0063400:five_prime_UTR
GTTCTTTATTCATCAACACT+TGG 0.563602 1_2:-23823715 Msa0063400:CDS
TTCATCAACACTTGGAAACG+TGG 0.563644 1_2:-23823707 Msa0063400:CDS
CATGTATAGGCTAACCAAGA+AGG 0.565037 1_2:+23823808 None:intergenic
AAGATTCTTGAGATCTCCAA+TGG 0.565205 1_2:+23825641 None:intergenic
GATGTAGAGAGTAATAATAT+GGG 0.568589 1_2:-23825264 Msa0063400:five_prime_UTR
TGGTTAGCCTATACATGTGA+AGG 0.570583 1_2:-23823802 Msa0063400:CDS
TATCTCTATGTGGATATGAA+GGG 0.575024 1_2:-23825398 Msa0063400:five_prime_UTR
TCATGTTAAACAAGTATGGA+AGG 0.575464 1_2:-23825929 Msa0063400:five_prime_UTR
AACGGAGCGATCAGATGAAG+AGG 0.576524 1_2:-23823413 Msa0063400:CDS
TTTAATGATGAAGATTGGAA+AGG 0.576984 1_2:-23823601 Msa0063400:CDS
CAACCTTAAGTGAAATGAGA+AGG 0.578337 1_2:+23828101 None:intergenic
ATATTTGTAGCTATTGGACA+TGG 0.578625 1_2:-23823541 Msa0063400:CDS
CAAGAAGGATAATTGTCACT+CGG 0.580030 1_2:+23823823 None:intergenic
ATTGTAAATAGCTTTGGCTG+TGG 0.580077 1_2:+23828426 None:intergenic
TTCCATATTAGGACAATATG+CGG 0.582494 1_2:+23823232 None:intergenic
ATCCAAGACTGAATGAGAGA+AGG 0.585394 1_2:+23825357 None:intergenic
AAGGATAATTGTCACTCGGA+AGG 0.586580 1_2:+23823827 None:intergenic
TTGGTAACTTCGAAAAGTCG+GGG 0.586765 1_2:+23825718 None:intergenic
AATGTAGCTGCTTATTGCGG+AGG 0.587119 1_2:-23827968 Msa0063400:five_prime_UTR
CCATTCTTGACAACAAGTGA+TGG 0.588301 1_2:+23823358 None:intergenic
CATGCCAACTGAAAAGCTCA+AGG 0.588932 1_2:+23828038 None:intergenic
GTCTTACTTATCTGAGAGGA+CGG 0.591602 1_2:-23827918 Msa0063400:five_prime_UTR
CAATCATCAAACAACCAGAA+AGG 0.593815 1_2:+23825535 None:intergenic
ACGGAGCGATCAGATGAAGA+GGG 0.603816 1_2:-23823412 Msa0063400:CDS
ATGCAACAATCACTATCCTC+AGG 0.604474 1_2:+23823757 None:intergenic
AAAGTTCAGCAAAAGAGCCT+GGG 0.608474 1_2:-23827592 Msa0063400:five_prime_UTR
GCATGATTTGATACGAGACA+TGG 0.611259 1_2:-23827633 Msa0063400:five_prime_UTR
AGCCTGGGAAGCGCCGATTG+TGG 0.615334 1_2:-23827577 Msa0063400:five_prime_UTR
TCCATATTAGGACAATATGC+GGG 0.615409 1_2:+23823233 None:intergenic
GGCACTTGGAAAAGTACAGA+AGG 0.616776 1_2:+23823778 None:intergenic
GCAGGGAACAGAAAATGTTG+AGG 0.619883 1_2:-23826178 Msa0063400:intron
TTTCGGTCATTGTGAAGACA+TGG 0.621075 1_2:+23828077 None:intergenic
TTTAGGAGTTGGTGACAATG+TGG 0.624441 1_2:-23823566 Msa0063400:CDS
GTTTGTATGATAGGGATATG+GGG 0.624460 1_2:-23828472 Msa0063400:five_prime_UTR
TTGAGTTAGTTGAATCTGAG+TGG 0.626200 1_2:+23825184 None:intergenic
TGGGTTGACTGTTAAGGAGA+CGG 0.627449 1_2:-23823521 Msa0063400:CDS
AGGGAGGATGAACAATGCAT+GGG 0.628808 1_2:-23823170 Msa0063400:three_prime_UTR
TCCAATGGACGTGTGCACCT+CGG 0.629499 1_2:+23825656 None:intergenic
ACTAGTGAAGAAAATTGTTG+AGG 0.630152 1_2:-23828605 Msa0063400:five_prime_UTR
AATGACCGAAATGGACGCAA+AGG 0.632152 1_2:-23828065 Msa0063400:five_prime_UTR
TATTTGTAGCTATTGGACAT+GGG 0.632457 1_2:-23823540 Msa0063400:CDS
CCAAGGATTTCGAGAGCCAG+TGG 0.633949 1_2:+23827941 None:intergenic
TTATTGCGGAGGATTACCAC+TGG 0.635357 1_2:-23827957 Msa0063400:five_prime_UTR
AGAAATGTAGCTGCTTATTG+CGG 0.639517 1_2:-23827971 Msa0063400:five_prime_UTR
GAGTTGGAAACAACATCACA+TGG 0.648595 1_2:-23825116 Msa0063400:five_prime_UTR
GGATTGTCAAAGTTTGTCCG+AGG 0.649992 1_2:-23825673 Msa0063400:five_prime_UTR
ATGCCAACTGAAAAGCTCAA+GGG 0.657260 1_2:+23828039 None:intergenic
ATTGGATATATATCTCTATG+TGG 0.658062 1_2:-23825408 Msa0063400:five_prime_UTR
CATGATTTGATACGAGACAT+GGG 0.665048 1_2:-23827632 Msa0063400:five_prime_UTR
CGGAGCGATCAGATGAAGAG+GGG 0.668560 1_2:-23823411 Msa0063400:CDS
ATATTGAGAATCAGCTACGA+CGG 0.668998 1_2:-23827833 Msa0063400:five_prime_UTR
TTCAGTAATAGACAACAATG+AGG 0.670658 1_2:+23828561 None:intergenic
TCTCAGATAAGTAAGACCCA+AGG 0.679137 1_2:+23827924 None:intergenic
TTGGGTCTTACTTATCTGAG+AGG 0.685582 1_2:-23827922 Msa0063400:five_prime_UTR
ACTTAGTAATCTTTCGCACG+CGG 0.688606 1_2:+23828518 None:intergenic
GGAGCGATCAGATGAAGAGG+GGG 0.689534 1_2:-23823410 Msa0063400:CDS
TGGTAACTTCGAAAAGTCGG+GGG 0.695078 1_2:+23825719 None:intergenic
AGATACATAGCATCGCATTG+GGG 0.720447 1_2:-23828273 Msa0063400:five_prime_UTR
CCACCAAACAGAGAAACACG+AGG 0.744989 1_2:+23825312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTTTTATAGTTATATTA+TGG - chr1_2:23824638-23824657 Msa0063400:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr1_2:23825266-23825285 Msa0063400:five_prime_UTR 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr1_2:23825314-23825333 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr1_2:23825315-23825334 None:intergenic 10.0%
!! TATAAATTAATAAATTTCTC+CGG - chr1_2:23825599-23825618 Msa0063400:five_prime_UTR 10.0%
!!! AAACTCTTTAATTTAATACT+CGG - chr1_2:23825162-23825181 Msa0063400:five_prime_UTR 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr1_2:23825200-23825219 Msa0063400:five_prime_UTR 15.0%
!!! AAAAAATATGAGTTGAAAAT+GGG + chr1_2:23826161-23826180 None:intergenic 15.0%
!!! ATAATTAGCTTTTCTATATT+TGG + chr1_2:23826290-23826309 None:intergenic 15.0%
!! TTAATAGTAAATATCAGTTA+AGG + chr1_2:23827001-23827020 None:intergenic 15.0%
!!! TTTTCCTTTATTTCATTAAA+TGG - chr1_2:23827045-23827064 Msa0063400:intron 15.0%
!!! AAAACATGTTTAACTTTAAA+AGG - chr1_2:23827271-23827290 Msa0063400:intron 15.0%
!! AAATATTACATACACATAAA+AGG + chr1_2:23828783-23828802 None:intergenic 15.0%
!!! TTTTACCATTGAATTTACTA+TGG + chr1_2:23823591-23823610 None:intergenic 20.0%
!! TTTGTGATACTAATAGTAAT+GGG - chr1_2:23823638-23823657 Msa0063400:CDS 20.0%
!! AGTTCACTAAAAAAAAATCT+TGG + chr1_2:23823991-23824010 None:intergenic 20.0%
!! TTTAGAAGATTATACACAAA+AGG - chr1_2:23824176-23824195 Msa0063400:intron 20.0%
!!! TAACTGTTGATTGAAATTAT+TGG - chr1_2:23824549-23824568 Msa0063400:intron 20.0%
!!! ATAAAAGTATATAAATGCAG+AGG + chr1_2:23824628-23824647 None:intergenic 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr1_2:23825626-23825645 None:intergenic 20.0%
!!! GAAAAAATATGAGTTGAAAA+TGG + chr1_2:23826162-23826181 None:intergenic 20.0%
!! TATAGAAAAGCTAATTATGA+AGG - chr1_2:23826292-23826311 Msa0063400:intron 20.0%
!!! TCTTCTTTTGATAAATTTGA+AGG - chr1_2:23826364-23826383 Msa0063400:intron 20.0%
!! TTTGATCTTACTATTGAATA+GGG + chr1_2:23826554-23826573 None:intergenic 20.0%
!!! TTTTGATCTTACTATTGAAT+AGG + chr1_2:23826555-23826574 None:intergenic 20.0%
!! TACTATTAATTAAGAGAACA+TGG - chr1_2:23827012-23827031 Msa0063400:intron 20.0%
!!! AGTTGTTTTTACAAATACTA+AGG - chr1_2:23827468-23827487 Msa0063400:intron 20.0%
!!! AATAATTTGTTTCCTTTTCA+CGG + chr1_2:23827691-23827710 None:intergenic 20.0%
!! AAGAAATTGGAATAAAATGA+AGG - chr1_2:23827748-23827767 Msa0063400:five_prime_UTR 20.0%
!! ATAAAAGGAAATTCCATATT+AGG + chr1_2:23828768-23828787 None:intergenic 20.0%
!!! ATGTGTATGTAATATTTTTC+AGG - chr1_2:23828786-23828805 Msa0063400:intron 20.0%
!!! TGTGTATGTAATATTTTTCA+GGG - chr1_2:23828787-23828806 Msa0063400:intron 20.0%
! AGAATTGAACTTAAACCTTT+AGG + chr1_2:23823268-23823287 None:intergenic 25.0%
! GTCATTATTATTATTACCCA+AGG - chr1_2:23823347-23823366 Msa0063400:CDS 25.0%
! TCTATTACTGAATTTCCAAT+TGG - chr1_2:23823436-23823455 Msa0063400:CDS 25.0%
! CTATTACTGAATTTCCAATT+GGG - chr1_2:23823437-23823456 Msa0063400:CDS 25.0%
! CGAAAGATTACTAAGTTTAT+TGG - chr1_2:23823475-23823494 Msa0063400:CDS 25.0%
! TCAAGAAAAGTTTGTATGAT+AGG - chr1_2:23823505-23823524 Msa0063400:CDS 25.0%
! CAAGAAAAGTTTGTATGATA+GGG - chr1_2:23823506-23823525 Msa0063400:CDS 25.0%
! GTTTGTGATACTAATAGTAA+TGG - chr1_2:23823637-23823656 Msa0063400:CDS 25.0%
! TTTACAACAACAACTTCTTT+CGG - chr1_2:23823669-23823688 Msa0063400:CDS 25.0%
!! TATTCTTTCCAACTTTTATG+AGG + chr1_2:23824320-23824339 None:intergenic 25.0%
! TGATCTTGATATGATTATAG+TGG + chr1_2:23824492-23824511 None:intergenic 25.0%
!!! ATCATAAGACTCTTTGTTTT+TGG - chr1_2:23824508-23824527 Msa0063400:intron 25.0%
! AATATGAGAATGCAAATCAT+AGG + chr1_2:23824578-23824597 None:intergenic 25.0%
! TATTCATTACAAATGTGCTT+AGG - chr1_2:23824594-23824613 Msa0063400:intron 25.0%
! GACACGTGTATTATATTATT+TGG + chr1_2:23824865-23824884 None:intergenic 25.0%
! ATTGTACATACCAAACAAAA+AGG + chr1_2:23825519-23825538 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr1_2:23825621-23825640 None:intergenic 25.0%
! AAAAAAAGTCGAGAAAGTAA+GGG + chr1_2:23825778-23825797 None:intergenic 25.0%
! AAAAAAAAGTCGAGAAAGTA+AGG + chr1_2:23825779-23825798 None:intergenic 25.0%
!!! TTTTTTTTACTTCACATGCA+GGG - chr1_2:23825791-23825810 Msa0063400:intron 25.0%
! TCCATGAAATGAAAAAAATG+AGG - chr1_2:23825885-23825904 Msa0063400:intron 25.0%
!!! ACCTCATTTTTTTCATTTCA+TGG + chr1_2:23825889-23825908 None:intergenic 25.0%
! ATAGTCATGTTAAACAAGTA+TGG - chr1_2:23826053-23826072 Msa0063400:five_prime_UTR 25.0%
!! TTGTTTGATGATTGACAAAT+TGG - chr1_2:23826460-23826479 Msa0063400:intron 25.0%
!! ATAGTAAGATCAAAAAGCAT+TGG - chr1_2:23826560-23826579 Msa0063400:intron 25.0%
! ATTGGATATATATCTCTATG+TGG - chr1_2:23826578-23826597 Msa0063400:intron 25.0%
! GATGTAGAGAGTAATAATAT+GGG - chr1_2:23826722-23826741 Msa0063400:intron 25.0%
!!! AAACACATCTAAGTTTTGAA+AGG + chr1_2:23826772-23826791 None:intergenic 25.0%
! TTTCAAAACTTAGATGTGTT+TGG - chr1_2:23826771-23826790 Msa0063400:intron 25.0%
! TAAATATCAGTTAAGGTGAA+AGG + chr1_2:23826994-23827013 None:intergenic 25.0%
!! TCCTTTATTTCATTAAATGG+TGG - chr1_2:23827048-23827067 Msa0063400:intron 25.0%
! ACCACCATTTAATGAAATAA+AGG + chr1_2:23827052-23827071 None:intergenic 25.0%
! AATAGACTAATACAAATGCT+AGG - chr1_2:23827118-23827137 Msa0063400:intron 25.0%
! ATAGACTAATACAAATGCTA+GGG - chr1_2:23827119-23827138 Msa0063400:intron 25.0%
! CTTTAAACAAATCAACGTAA+CGG + chr1_2:23827235-23827254 None:intergenic 25.0%
!!! TTTTTTACTTGTTGGATTGT+AGG + chr1_2:23827416-23827435 None:intergenic 25.0%
!! GGTTTAAAAGCTTTAGTATA+TGG - chr1_2:23827489-23827508 Msa0063400:intron 25.0%
!!! AAGCATTGTTTTCTAATGAA+GGG + chr1_2:23827587-23827606 None:intergenic 25.0%
!!! TTTTCTAGAATGTTGATATC+AGG - chr1_2:23827773-23827792 Msa0063400:five_prime_UTR 25.0%
!! TACTTTTATTCTCTTCTTTG+AGG + chr1_2:23827820-23827839 None:intergenic 25.0%
!! TTTTTGTAAACTTGATCTAC+TGG + chr1_2:23827854-23827873 None:intergenic 25.0%
! TACACAGAAAAATGTATAGA+AGG + chr1_2:23828017-23828036 None:intergenic 25.0%
! TTTAATGATGAAGATTGGAA+AGG - chr1_2:23828385-23828404 Msa0063400:five_prime_UTR 25.0%
!! AAAGGTGTAGTATCAAATTT+AGG - chr1_2:23828403-23828422 Msa0063400:five_prime_UTR 25.0%
!! AGATCTCGTAAATTTTTGAT+TGG - chr1_2:23828729-23828748 Msa0063400:intron 25.0%
!!! GATCTCGTAAATTTTTGATT+GGG - chr1_2:23828730-23828749 Msa0063400:intron 25.0%
!!! TATGTAATATTTTTCAGGGA+GGG - chr1_2:23828791-23828810 Msa0063400:intron 25.0%
ATTGAACTTAAACCTTTAGG+AGG + chr1_2:23823265-23823284 None:intergenic 30.0%
ACTAGTGAAGAAAATTGTTG+AGG - chr1_2:23823381-23823400 Msa0063400:CDS 30.0%
TTCAGTAATAGACAACAATG+AGG + chr1_2:23823428-23823447 None:intergenic 30.0%
AAGTTTGTATGATAGGGATA+TGG - chr1_2:23823512-23823531 Msa0063400:CDS 30.0%
AGTTTGTATGATAGGGATAT+GGG - chr1_2:23823513-23823532 Msa0063400:CDS 30.0%
GATTCGATTGTAAATAGCTT+TGG + chr1_2:23823569-23823588 None:intergenic 30.0%
CGAATCCATAGTAAATTCAA+TGG - chr1_2:23823583-23823602 Msa0063400:CDS 30.0%
TTCGGATCTACTGAAAATAA+AGG - chr1_2:23823687-23823706 Msa0063400:CDS 30.0%
TTCCAGACCTAAACAATTTA+GGG + chr1_2:23823834-23823853 None:intergenic 30.0%
CTAAAAAAAAATCTTGGCCT+TGG + chr1_2:23823985-23824004 None:intergenic 30.0%
GATGTTACTGAGATACTTAA+TGG - chr1_2:23824246-23824265 Msa0063400:intron 30.0%
ATTATGGCTAAATTGCACTT+TGG - chr1_2:23824654-23824673 Msa0063400:intron 30.0%
! GTTACACAAACCGATAATTT+TGG + chr1_2:23824786-23824805 None:intergenic 30.0%
GTCATCTGAGTCATTAAATT+TGG - chr1_2:23824882-23824901 Msa0063400:intron 30.0%
! GGCTAAATTGAACTTACTTT+TGG + chr1_2:23825010-23825029 None:intergenic 30.0%
CCTAGGACGTAATAATATAA+GGG + chr1_2:23825031-23825050 None:intergenic 30.0%
TTTACAATAACACGCGATAA+TGG - chr1_2:23825098-23825117 Msa0063400:five_prime_UTR 30.0%
!!! TTTTTTACATTGACCCAAGT+CGG + chr1_2:23825228-23825247 None:intergenic 30.0%
! GGAGATCCCTTTATAATTTT+CGG - chr1_2:23825287-23825306 Msa0063400:five_prime_UTR 30.0%
TTGGGACCGAAAATTATAAA+GGG + chr1_2:23825296-23825315 None:intergenic 30.0%
GTACAGTAAATGTAATCAAG+AGG + chr1_2:23825388-23825407 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr1_2:23825506-23825525 Msa0063400:five_prime_UTR 30.0%
!!! CTTTTTTTTACTTCACATGC+AGG - chr1_2:23825790-23825809 Msa0063400:intron 30.0%
! TTTCATTTCATGGAAAGCAT+TGG + chr1_2:23825879-23825898 None:intergenic 30.0%
ATGAGGTTCTTAAAACTTGA+TGG - chr1_2:23825902-23825921 Msa0063400:intron 30.0%
GGAAATATATCCATAATCTC+CGG + chr1_2:23825939-23825958 None:intergenic 30.0%
ATCGATCAATCTCAATTGTT+TGG + chr1_2:23825960-23825979 None:intergenic 30.0%
AACAATTGAGATTGATCGAT+TGG - chr1_2:23825960-23825979 Msa0063400:five_prime_UTR 30.0%
TCATGTTAAACAAGTATGGA+AGG - chr1_2:23826057-23826076 Msa0063400:five_prime_UTR 30.0%
! CATTTCCTTTTAAACCTCAA+AGG - chr1_2:23826097-23826116 Msa0063400:five_prime_UTR 30.0%
!! ATCAACCTTTGAGGTTTAAA+AGG + chr1_2:23826105-23826124 None:intergenic 30.0%
TATTGGTATATCAACCTTTG+AGG + chr1_2:23826114-23826133 None:intergenic 30.0%
GTTGAAAATGGGAAATGAAA+AGG + chr1_2:23826150-23826169 None:intergenic 30.0%
! CAATATTTTCTTGCAGTTGA+TGG - chr1_2:23826196-23826215 Msa0063400:intron 30.0%
! ATTTGGTAACTTCGAAAAGT+CGG + chr1_2:23826273-23826292 None:intergenic 30.0%
! TCACTTTATAGACCTCTTTT+GGG + chr1_2:23826412-23826431 None:intergenic 30.0%
GGAAGAAGATATATTGCAAA+TGG - chr1_2:23826481-23826500 Msa0063400:intron 30.0%
ATATCTCTATGTGGATATGA+AGG - chr1_2:23826587-23826606 Msa0063400:intron 30.0%
TATCTCTATGTGGATATGAA+GGG - chr1_2:23826588-23826607 Msa0063400:intron 30.0%
ATTATTACTCTCTACATCCA+TGG + chr1_2:23826720-23826739 None:intergenic 30.0%
GGATGTAGAGAGTAATAATA+TGG - chr1_2:23826721-23826740 Msa0063400:intron 30.0%
!!! ACATCTAAGTTTTGAAAGGA+TGG + chr1_2:23826768-23826787 None:intergenic 30.0%
AATGGTGGTATAAAAGTTTC+TGG - chr1_2:23827063-23827082 Msa0063400:intron 30.0%
CATTGACACGAAATTTATTC+AGG - chr1_2:23827086-23827105 Msa0063400:intron 30.0%
!!! ATTGCAGCTTTTTTACTTGT+TGG + chr1_2:23827424-23827443 None:intergenic 30.0%
! TAGCATTTAGCTTACTGTTA+TGG + chr1_2:23827553-23827572 None:intergenic 30.0%
!!! GAAGCATTGTTTTCTAATGA+AGG + chr1_2:23827588-23827607 None:intergenic 30.0%
! CACCTTTTCATGAATACAAA+GGG + chr1_2:23827638-23827657 None:intergenic 30.0%
! TCACCTTTTCATGAATACAA+AGG + chr1_2:23827639-23827658 None:intergenic 30.0%
! TTTTCACGGAAATTCAAATC+TGG + chr1_2:23827677-23827696 None:intergenic 30.0%
AGATTTGAATTTCCGTGAAA+AGG - chr1_2:23827676-23827695 Msa0063400:five_prime_UTR 30.0%
!!! CACTATTTTGACACTGTAAA+TGG - chr1_2:23828040-23828059 Msa0063400:five_prime_UTR 30.0%
TAAGCTTATGTTCATGATAC+AGG - chr1_2:23828108-23828127 Msa0063400:five_prime_UTR 30.0%
AAGCTTATGTTCATGATACA+GGG - chr1_2:23828109-23828128 Msa0063400:five_prime_UTR 30.0%
GTTCTTTATTCATCAACACT+TGG - chr1_2:23828271-23828290 Msa0063400:five_prime_UTR 30.0%
! TGTCGTTTAATGATGAAGAT+TGG - chr1_2:23828380-23828399 Msa0063400:five_prime_UTR 30.0%
GTAGTATCAAATTTAGGAGT+TGG - chr1_2:23828409-23828428 Msa0063400:five_prime_UTR 30.0%
ATATTTGTAGCTATTGGACA+TGG - chr1_2:23828445-23828464 Msa0063400:five_prime_UTR 30.0%
TATTTGTAGCTATTGGACAT+GGG - chr1_2:23828446-23828465 Msa0063400:five_prime_UTR 30.0%
TGCATTTCTACTTCATGTAA+TGG + chr1_2:23828535-23828554 None:intergenic 30.0%
ACCATCATCTAATGTGAAAA+CGG - chr1_2:23828555-23828574 Msa0063400:five_prime_UTR 30.0%
TTCCATATTAGGACAATATG+CGG + chr1_2:23828757-23828776 None:intergenic 30.0%
!!! GTATGTAATATTTTTCAGGG+AGG - chr1_2:23828790-23828809 Msa0063400:intron 30.0%
TATTATTACCCAAGGAGTGA+AGG - chr1_2:23823355-23823374 Msa0063400:CDS 35.0%
TACTGAATTTCCAATTGGGT+TGG - chr1_2:23823441-23823460 Msa0063400:CDS 35.0%
GTTTGTATGATAGGGATATG+GGG - chr1_2:23823514-23823533 Msa0063400:CDS 35.0%
!! ATTGTAAATAGCTTTGGCTG+TGG + chr1_2:23823563-23823582 None:intergenic 35.0%
AAGATACATAGCATCGCATT+GGG - chr1_2:23823712-23823731 Msa0063400:CDS 35.0%
AAGATCGAGAAAAGACTTCA+TGG - chr1_2:23823742-23823761 Msa0063400:CDS 35.0%
GAAAAGACTTCATGGACAAA+AGG - chr1_2:23823750-23823769 Msa0063400:CDS 35.0%
GTGCAAACCCTAAATTGTTT+AGG - chr1_2:23823824-23823843 Msa0063400:CDS 35.0%
AACCCTAAATTGTTTAGGTC+TGG - chr1_2:23823829-23823848 Msa0063400:CDS 35.0%
CTTCCAGACCTAAACAATTT+AGG + chr1_2:23823835-23823854 None:intergenic 35.0%
CAACCTTAAGTGAAATGAGA+AGG + chr1_2:23823888-23823907 None:intergenic 35.0%
AGAAATGTAGCTGCTTATTG+CGG - chr1_2:23824015-23824034 Msa0063400:intron 35.0%
ATCTGTTGCACTTGATTGTT+GGG + chr1_2:23824135-23824154 None:intergenic 35.0%
TATCTGTTGCACTTGATTGT+TGG + chr1_2:23824136-23824155 None:intergenic 35.0%
ATATTGAGAATCAGCTACGA+CGG - chr1_2:23824153-23824172 Msa0063400:intron 35.0%
!! GACATATGCTGTTTCTTCAT+TGG - chr1_2:23824210-23824229 Msa0063400:intron 35.0%
ACTGAGATACTTAATGGTTG+TGG - chr1_2:23824252-23824271 Msa0063400:intron 35.0%
CATGATTTGATACGAGACAT+GGG - chr1_2:23824354-23824373 Msa0063400:intron 35.0%
CATCTTCATGAAACCACAAT+CGG + chr1_2:23824425-23824444 None:intergenic 35.0%
AATCACCAATTGTGAAAGCT+GGG + chr1_2:23824682-23824701 None:intergenic 35.0%
AAATCACCAATTGTGAAAGC+TGG + chr1_2:23824683-23824702 None:intergenic 35.0%
TTGACCTGGTCAAAATCAAT+GGG + chr1_2:23824747-23824766 None:intergenic 35.0%
!! TATCGGTTTGTGTAACTTGA+AGG - chr1_2:23824790-23824809 Msa0063400:intron 35.0%
!! ATCGGTTTGTGTAACTTGAA+GGG - chr1_2:23824791-23824810 Msa0063400:intron 35.0%
CCCTTATATTATTACGTCCT+AGG - chr1_2:23825028-23825047 Msa0063400:intron 35.0%
GCCTAGGACGTAATAATATA+AGG + chr1_2:23825032-23825051 None:intergenic 35.0%
! TTTTTACATTGACCCAAGTC+GGG + chr1_2:23825227-23825246 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG + chr1_2:23825297-23825316 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr1_2:23825432-23825451 None:intergenic 35.0%
CTAATTTACGTTGAGTCTCA+AGG - chr1_2:23825454-23825473 Msa0063400:five_prime_UTR 35.0%
ATAGCACCAACACTTCAAAA+TGG + chr1_2:23825717-23825736 None:intergenic 35.0%
!! TGTTGAGGGATTGATTTTGA+AGG - chr1_2:23825823-23825842 Msa0063400:intron 35.0%
!! ATTTTGAAGGTGCAAAGAAC+AGG - chr1_2:23825836-23825855 Msa0063400:intron 35.0%
TATATCCATAATCTCCGGTA+AGG + chr1_2:23825934-23825953 None:intergenic 35.0%
GTCATTGGGTATAAAGTTGA+AGG + chr1_2:23825996-23826015 None:intergenic 35.0%
TATACCCAATGACTTTGATC+TGG - chr1_2:23826003-23826022 Msa0063400:five_prime_UTR 35.0%
ATACCCAATGACTTTGATCT+GGG - chr1_2:23826004-23826023 Msa0063400:five_prime_UTR 35.0%
TTTCCCAGATCAAAGTCATT+GGG + chr1_2:23826010-23826029 None:intergenic 35.0%
ATTTCCCAGATCAAAGTCAT+TGG + chr1_2:23826011-23826030 None:intergenic 35.0%
ACAAGTATGGAAGGAAACTA+AGG - chr1_2:23826066-23826085 Msa0063400:five_prime_UTR 35.0%
AAGGAGGCAATAGATCTTAT+TGG + chr1_2:23826131-23826150 None:intergenic 35.0%
GAAAATGGGAAATGAAAAGG+AGG + chr1_2:23826147-23826166 None:intergenic 35.0%
CTCTCAATCTTAGTCATTCT+AGG - chr1_2:23826231-23826250 Msa0063400:intron 35.0%
! TTTGGTAACTTCGAAAAGTC+GGG + chr1_2:23826272-23826291 None:intergenic 35.0%
AAGATTCTTGAGATCTCCAA+TGG + chr1_2:23826348-23826367 None:intergenic 35.0%
! CTCACTTTATAGACCTCTTT+TGG + chr1_2:23826413-23826432 None:intergenic 35.0%
CAATCATCAAACAACCAGAA+AGG + chr1_2:23826454-23826473 None:intergenic 35.0%
ACTCTGATTGCAGTAAATAC+TGG - chr1_2:23826515-23826534 Msa0063400:intron 35.0%
! TGCATTGTCTTTAGTTTCCA+TGG - chr1_2:23826700-23826719 Msa0063400:intron 35.0%
TTTGAAAGGATGGTAAGCAT+TGG + chr1_2:23826758-23826777 None:intergenic 35.0%
TTGAGTTAGTTGAATCTGAG+TGG + chr1_2:23826805-23826824 None:intergenic 35.0%
TGATGTGAACTTTACTGAGT+TGG - chr1_2:23826854-23826873 Msa0063400:intron 35.0%
! AAGGAACGATTTGAGATTTG+TGG + chr1_2:23826897-23826916 None:intergenic 35.0%
AGATCACTTGTGATTGGAAT+GGG - chr1_2:23826918-23826937 Msa0063400:intron 35.0%
TATCAGTTAAGGTGAAAGGA+TGG + chr1_2:23826990-23827009 None:intergenic 35.0%
AGCCCTTTGTATTCATGAAA+AGG - chr1_2:23827633-23827652 Msa0063400:five_prime_UTR 35.0%
!! TGCTGATGCTTTGAAGAAAT+TGG - chr1_2:23827735-23827754 Msa0063400:five_prime_UTR 35.0%
! GGAGTGTCTGACAATATATA+TGG + chr1_2:23827799-23827818 None:intergenic 35.0%
TTTGTCTACAAGTTCTCTCT+CGG + chr1_2:23827908-23827927 None:intergenic 35.0%
ACTATATTGCCTGGTTTCAT+TGG - chr1_2:23827983-23828002 Msa0063400:five_prime_UTR 35.0%
TATGTTCATGATACAGGGAT+TGG - chr1_2:23828114-23828133 Msa0063400:five_prime_UTR 35.0%
CAAGAAGGATAATTGTCACT+CGG + chr1_2:23828166-23828185 None:intergenic 35.0%
GATAGTGATTGTTGCATGAA+AGG - chr1_2:23828235-23828254 Msa0063400:five_prime_UTR 35.0%
GTGGAGATATTTGTAGCTAT+TGG - chr1_2:23828439-23828458 Msa0063400:five_prime_UTR 35.0%
! CAATTTTTGTGTCAGTCGAT+GGG + chr1_2:23828510-23828529 None:intergenic 35.0%
! TCAATTTTTGTGTCAGTCGA+TGG + chr1_2:23828511-23828530 None:intergenic 35.0%
! TCCGTTTTCACATTAGATGA+TGG + chr1_2:23828559-23828578 None:intergenic 35.0%
TCTATTCTCATATCAGGTGA+TGG + chr1_2:23828607-23828626 None:intergenic 35.0%
! GATGGTTCTATTCTCATATC+AGG + chr1_2:23828613-23828632 None:intergenic 35.0%
ATTCTATTTGTCGCTGGTAA+TGG + chr1_2:23828655-23828674 None:intergenic 35.0%
GTAAAGATTCTATTTGTCGC+TGG + chr1_2:23828661-23828680 None:intergenic 35.0%
TACAAGATTTGCAAAGAGAG+TGG - chr1_2:23828678-23828697 Msa0063400:intron 35.0%
ACAAGATTTGCAAAGAGAGT+GGG - chr1_2:23828679-23828698 Msa0063400:intron 35.0%
TCCATATTAGGACAATATGC+GGG + chr1_2:23828756-23828775 None:intergenic 35.0%
TATACTCATTCTACCCCACA+TGG - chr1_2:23823196-23823215 Msa0063400:three_prime_UTR 40.0%
ATACTCATTCTACCCCACAT+GGG - chr1_2:23823197-23823216 Msa0063400:three_prime_UTR 40.0%
!! ATGGTATTGGCTTTGGACTT+GGG - chr1_2:23823228-23823247 Msa0063400:three_prime_UTR 40.0%
AATTCTCCTCAGTGCCAATT+TGG - chr1_2:23823282-23823301 Msa0063400:CDS 40.0%
ACTTAGTAATCTTTCGCACG+CGG + chr1_2:23823471-23823490 None:intergenic 40.0%
TATGATAGGGATATGGGGAA+TGG - chr1_2:23823519-23823538 Msa0063400:CDS 40.0%
ATGATAGGGATATGGGGAAT+GGG - chr1_2:23823520-23823539 Msa0063400:CDS 40.0%
CAAGATACATAGCATCGCAT+TGG - chr1_2:23823711-23823730 Msa0063400:CDS 40.0%
AGATACATAGCATCGCATTG+GGG - chr1_2:23823713-23823732 Msa0063400:CDS 40.0%
!! GGCTTTTAATTGCTCAGACT+TGG + chr1_2:23823800-23823819 None:intergenic 40.0%
! CAATTTAGGGTTTGCACACA+GGG + chr1_2:23823821-23823840 None:intergenic 40.0%
! ACAATTTAGGGTTTGCACAC+AGG + chr1_2:23823822-23823841 None:intergenic 40.0%
ACGCCTTCTCATTTCACTTA+AGG - chr1_2:23823882-23823901 Msa0063400:intron 40.0%
TTTCGGTCATTGTGAAGACA+TGG + chr1_2:23823912-23823931 None:intergenic 40.0%
TGTCTTCACAATGACCGAAA+TGG - chr1_2:23823912-23823931 Msa0063400:intron 40.0%
ATGCCAACTGAAAAGCTCAA+GGG + chr1_2:23823950-23823969 None:intergenic 40.0%
TCTCAGATAAGTAAGACCCA+AGG + chr1_2:23824065-23824084 None:intergenic 40.0%
TTGGGTCTTACTTATCTGAG+AGG - chr1_2:23824064-23824083 Msa0063400:intron 40.0%
GTCTTACTTATCTGAGAGGA+CGG - chr1_2:23824068-23824087 Msa0063400:intron 40.0%
TGTGGACTTCATGCTGATAT+TGG - chr1_2:23824270-23824289 Msa0063400:intron 40.0%
GCATGATTTGATACGAGACA+TGG - chr1_2:23824353-23824372 Msa0063400:intron 40.0%
GACATGGGAAGATCAATTGT+TGG - chr1_2:23824369-23824388 Msa0063400:intron 40.0%
AAAGTTCAGCAAAAGAGCCT+GGG - chr1_2:23824394-23824413 Msa0063400:intron 40.0%
TTGCAAAAGGGGCTAAAGTT+GGG + chr1_2:23824712-23824731 None:intergenic 40.0%
TTTGCAAAAGGGGCTAAAGT+TGG + chr1_2:23824713-23824732 None:intergenic 40.0%
TGACCTGGTCAAAATCAATG+GGG + chr1_2:23824746-23824765 None:intergenic 40.0%
GTTGACCTGGTCAAAATCAA+TGG + chr1_2:23824918-23824937 None:intergenic 40.0%
GTTGACCTGGTCAAAATCAA+GGG - chr1_2:23824918-23824937 Msa0063400:intron 40.0%
TTGACCTGGTCAAAATCAAG+GGG - chr1_2:23824919-23824938 Msa0063400:intron 40.0%
!! GGGACATCACTTTTGCAAAA+GGG - chr1_2:23824940-23824959 Msa0063400:intron 40.0%
!! GGACATCACTTTTGCAAAAG+GGG - chr1_2:23824941-23824960 Msa0063400:intron 40.0%
!! GTGCTATCTAGATTTCTAGC+AGG - chr1_2:23825730-23825749 Msa0063400:five_prime_UTR 40.0%
!! ATCTAGATTTCTAGCAGGCA+AGG - chr1_2:23825735-23825754 Msa0063400:five_prime_UTR 40.0%
CAGGGAACAGAAAATGTTGA+GGG - chr1_2:23825809-23825828 Msa0063400:intron 40.0%
! TTGGTAACTTCGAAAAGTCG+GGG + chr1_2:23826271-23826290 None:intergenic 40.0%
TTGAAGGACTGTACAAGTCT+TGG - chr1_2:23826380-23826399 Msa0063400:intron 40.0%
GTGAAAACTCTCATCCTTTC+TGG - chr1_2:23826437-23826456 Msa0063400:intron 40.0%
TACTGCAATCAGAGTTGTCA+AGG + chr1_2:23826510-23826529 None:intergenic 40.0%
TTCCTTCTCTCATTCAGTCT+TGG - chr1_2:23826627-23826646 Msa0063400:intron 40.0%
ATCCAAGACTGAATGAGAGA+AGG + chr1_2:23826632-23826651 None:intergenic 40.0%
!! CGAGGTAAGGAATTTCTAGT+TGG + chr1_2:23826659-23826678 None:intergenic 40.0%
AAACAGAGAAACACGAGGTA+AGG + chr1_2:23826672-23826691 None:intergenic 40.0%
TTACCTCGTGTTTCTCTGTT+TGG - chr1_2:23826671-23826690 Msa0063400:intron 40.0%
GAGTTGGAAACAACATCACA+TGG - chr1_2:23826870-23826889 Msa0063400:intron 40.0%
TCCTTGAGATCACTTGTGAT+TGG - chr1_2:23826912-23826931 Msa0063400:intron 40.0%
TCCAATCACAAGTGATCTCA+AGG + chr1_2:23826916-23826935 None:intergenic 40.0%
GAGATCACTTGTGATTGGAA+TGG - chr1_2:23826917-23826936 Msa0063400:intron 40.0%
GAAGTTCCCATGATTCTCTT+GGG - chr1_2:23826940-23826959 Msa0063400:intron 40.0%
GCTATTCCCAAGAGAATCAT+GGG + chr1_2:23826949-23826968 None:intergenic 40.0%
AGCTATTCCCAAGAGAATCA+TGG + chr1_2:23826950-23826969 None:intergenic 40.0%
TTAAGGTGAAAGGATGGAGA+AGG + chr1_2:23826984-23827003 None:intergenic 40.0%
GTTTCCTACTACTGTAGAGA+GGG + chr1_2:23827523-23827542 None:intergenic 40.0%
AGTTTCCTACTACTGTAGAG+AGG + chr1_2:23827524-23827543 None:intergenic 40.0%
CTCTACAGTAGTAGGAAACT+AGG - chr1_2:23827524-23827543 Msa0063400:intron 40.0%
!! CTTCAAGTTGTTACTTACGC+CGG - chr1_2:23827604-23827623 Msa0063400:five_prime_UTR 40.0%
AATACAAAGGGCTTGTAAGC+CGG + chr1_2:23827626-23827645 None:intergenic 40.0%
GAAAGTGAAAGCTGTCTTGT+TGG - chr1_2:23827947-23827966 Msa0063400:five_prime_UTR 40.0%
! AAAGCTGTCTTGTTGGAAAG+CGG - chr1_2:23827954-23827973 Msa0063400:five_prime_UTR 40.0%
GAAACTGATCCAATGAAACC+AGG + chr1_2:23827995-23828014 None:intergenic 40.0%
AAGGATAATTGTCACTCGGA+AGG + chr1_2:23828162-23828181 None:intergenic 40.0%
CGAGTGACAATTATCCTTCT+TGG - chr1_2:23828164-23828183 Msa0063400:five_prime_UTR 40.0%
CATGTATAGGCTAACCAAGA+AGG + chr1_2:23828181-23828200 None:intergenic 40.0%
!! TGGTTAGCCTATACATGTGA+AGG - chr1_2:23828184-23828203 Msa0063400:five_prime_UTR 40.0%
AGAAGGTCCTTCACATGTAT+AGG + chr1_2:23828194-23828213 None:intergenic 40.0%
ATGCAACAATCACTATCCTC+AGG + chr1_2:23828232-23828251 None:intergenic 40.0%
TTCATCAACACTTGGAAACG+TGG - chr1_2:23828279-23828298 Msa0063400:five_prime_UTR 40.0%
CTGTGTCTTGCTTGTAAATC+TGG + chr1_2:23828357-23828376 None:intergenic 40.0%
!! TTTAGGAGTTGGTGACAATG+TGG - chr1_2:23828420-23828439 Msa0063400:five_prime_UTR 40.0%
CCATTCTTGACAACAAGTGA+TGG + chr1_2:23828631-23828650 None:intergenic 40.0%
!! CCATCACTTGTTGTCAAGAA+TGG - chr1_2:23828628-23828647 Msa0063400:five_prime_UTR 40.0%
!!! AATATTTTTCAGGGAGGGCT+AGG - chr1_2:23828796-23828815 Msa0063400:intron 40.0%
!!! ATATTTTTCAGGGAGGGCTA+GGG - chr1_2:23828797-23828816 Msa0063400:intron 40.0%
AGTCCAAAGCCAATACCATC+AGG + chr1_2:23823227-23823246 None:intergenic 45.0%
!! GATGGTATTGGCTTTGGACT+TGG - chr1_2:23823227-23823246 Msa0063400:three_prime_UTR 45.0%
GCTAAACTAGCCCACCAAAT+TGG + chr1_2:23823299-23823318 None:intergenic 45.0%
CTAGTTCACCTTCACTCCTT+GGG + chr1_2:23823366-23823385 None:intergenic 45.0%
ACTAGTTCACCTTCACTCCT+TGG + chr1_2:23823367-23823386 None:intergenic 45.0%
CTTAGTAATCTTTCGCACGC+GGG + chr1_2:23823470-23823489 None:intergenic 45.0%
!! TTTGGCTGTGGTTGTTTTCC+CGG + chr1_2:23823551-23823570 None:intergenic 45.0%
AATGACCGAAATGGACGCAA+AGG - chr1_2:23823921-23823940 Msa0063400:intron 45.0%
! AGTCCCTTGAGCTTTTCAGT+TGG - chr1_2:23823944-23823963 Msa0063400:intron 45.0%
CATGCCAACTGAAAAGCTCA+AGG + chr1_2:23823951-23823970 None:intergenic 45.0%
AATGTAGCTGCTTATTGCGG+AGG - chr1_2:23824018-23824037 Msa0063400:intron 45.0%
TTATTGCGGAGGATTACCAC+TGG - chr1_2:23824029-23824048 Msa0063400:intron 45.0%
CTGAGAGGACGGAATAAGAA+TGG - chr1_2:23824079-23824098 Msa0063400:intron 45.0%
GAAAGTTCAGCAAAAGAGCC+TGG - chr1_2:23824393-23824412 Msa0063400:intron 45.0%
TGCAAAAGGGGCTAAAGTTG+GGG + chr1_2:23824711-23824730 None:intergenic 45.0%
!!! GGACGTCACTTTTGCAAAAG+GGG + chr1_2:23824723-23824742 None:intergenic 45.0%
!!! GGGACGTCACTTTTGCAAAA+GGG + chr1_2:23824724-23824743 None:intergenic 45.0%
ACCTGGTCAAAATCAATGGG+GGG + chr1_2:23824744-23824763 None:intergenic 45.0%
GACCTGGTCAAAATCAATGG+GGG + chr1_2:23824745-23824764 None:intergenic 45.0%
GGTTGGGAGGCCAAAATTAT+CGG - chr1_2:23824773-23824792 Msa0063400:intron 45.0%
CGTTGACCTGGTCAAAATCA+AGG - chr1_2:23824917-23824936 Msa0063400:intron 45.0%
TGACCTGGTCAAAATCAAGG+GGG - chr1_2:23824920-23824939 Msa0063400:intron 45.0%
!! GGGGACATCACTTTTGCAAA+AGG - chr1_2:23824939-23824958 Msa0063400:intron 45.0%
! CTTTCACAAACCGGCGATTT+TGG + chr1_2:23824981-23825000 None:intergenic 45.0%
!! AATCGCCGGTTTGTGAAAGT+TGG - chr1_2:23824982-23825001 Msa0063400:intron 45.0%
!! ATCGCCGGTTTGTGAAAGTT+GGG - chr1_2:23824983-23825002 Msa0063400:intron 45.0%
GTGTTACATAGCTAGAGCCT+AGG + chr1_2:23825048-23825067 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr1_2:23825479-23825498 Msa0063400:five_prime_UTR 45.0%
CAACACTTCAAAATGGCAGC+AGG + chr1_2:23825710-23825729 None:intergenic 45.0%
!!! CTGCTGCCATTTTGAAGTGT+TGG - chr1_2:23825708-23825727 Msa0063400:five_prime_UTR 45.0%
GCAGGGAACAGAAAATGTTG+AGG - chr1_2:23825808-23825827 Msa0063400:intron 45.0%
!! CTTGATGGTGTTGACCTTAC+CGG - chr1_2:23825917-23825936 Msa0063400:intron 45.0%
GTTGACCTTACCGGAGATTA+TGG - chr1_2:23825926-23825945 Msa0063400:five_prime_UTR 45.0%
TGGTAACTTCGAAAAGTCGG+GGG + chr1_2:23826270-23826289 None:intergenic 45.0%
GGATTGTCAAAGTTTGTCCG+AGG - chr1_2:23826313-23826332 Msa0063400:intron 45.0%
TCTTGGCAATCTCCCAAAAG+AGG - chr1_2:23826397-23826416 Msa0063400:intron 45.0%
GGAAGTTCCCATGATTCTCT+TGG - chr1_2:23826939-23826958 Msa0063400:intron 45.0%
TCTTGGGAATAGCTTAGCAC+AGG - chr1_2:23826956-23826975 Msa0063400:intron 45.0%
TCTTCCCTCTCTACAGTAGT+AGG - chr1_2:23827516-23827535 Msa0063400:intron 45.0%
! TGTCTTGTTGGAAAGCGGAA+AGG - chr1_2:23827959-23827978 Msa0063400:five_prime_UTR 45.0%
CGGAAAGGAACTATATTGCC+TGG - chr1_2:23827974-23827993 Msa0063400:five_prime_UTR 45.0%
! GGCACTTGGAAAAGTACAGA+AGG + chr1_2:23828211-23828230 None:intergenic 45.0%
! TGTACTTTTCCAAGTGCCTG+AGG - chr1_2:23828213-23828232 Msa0063400:five_prime_UTR 45.0%
AATCACTATCCTCAGGCACT+TGG + chr1_2:23828225-23828244 None:intergenic 45.0%
! TGGACATGGGTTGACTGTTA+AGG - chr1_2:23828459-23828478 Msa0063400:five_prime_UTR 45.0%
! TGGGTTGACTGTTAAGGAGA+CGG - chr1_2:23828465-23828484 Msa0063400:five_prime_UTR 45.0%
GCCCGCATATTGTCCTAATA+TGG - chr1_2:23828752-23828771 Msa0063400:intron 45.0%
TAGGGAGGATGAACAATGCA+TGG - chr1_2:23828815-23828834 Msa0063400:five_prime_UTR 45.0%
AGGGAGGATGAACAATGCAT+GGG - chr1_2:23828816-23828835 Msa0063400:five_prime_UTR 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr1_2:23825265-23825284 Msa0063400:five_prime_UTR 5.0%
TCATTCTACCCCACATGGGT+TGG - chr1_2:23823201-23823220 Msa0063400:three_prime_UTR 50.0%
!! ATGGGTTGGCCTGATGGTAT+TGG - chr1_2:23823215-23823234 Msa0063400:three_prime_UTR 50.0%
!! TGGCCTGATGGTATTGGCTT+TGG - chr1_2:23823221-23823240 Msa0063400:three_prime_UTR 50.0%
!! GTATTGGCTTTGGACTTGGG+AGG - chr1_2:23823231-23823250 Msa0063400:three_prime_UTR 50.0%
TCTCCTCAGTGCCAATTTGG+TGG - chr1_2:23823285-23823304 Msa0063400:CDS 50.0%
CTCCTCAGTGCCAATTTGGT+GGG - chr1_2:23823286-23823305 Msa0063400:CDS 50.0%
ATAGGGATATGGGGAATGGG+TGG - chr1_2:23823523-23823542 Msa0063400:CDS 50.0%
ATATGGGGAATGGGTGGATC+CGG - chr1_2:23823529-23823548 Msa0063400:CDS 50.0%
GGACTCCTTTGCGTCCATTT+CGG + chr1_2:23823929-23823948 None:intergenic 50.0%
! GGCATGCTTTTCGACAACCA+AGG - chr1_2:23823965-23823984 Msa0063400:intron 50.0%
!! CACTGGCTCTCGAAATCCTT+GGG - chr1_2:23824046-23824065 Msa0063400:intron 50.0%
TTATGAGGCTGCGCTCTATG+AGG + chr1_2:23824305-23824324 None:intergenic 50.0%
GAGCGCAGCCTCATAAAAGT+TGG - chr1_2:23824309-23824328 Msa0063400:intron 50.0%
GTGGTTTCATGAAGATGCGC+TGG - chr1_2:23824428-23824447 Msa0063400:intron 50.0%
TGGCTCCCAGCTTTCACAAT+TGG - chr1_2:23824674-23824693 Msa0063400:intron 50.0%
CAAAAGGGGCTAAAGTTGGG+GGG + chr1_2:23824709-23824728 None:intergenic 50.0%
GCAAAAGGGGCTAAAGTTGG+GGG + chr1_2:23824710-23824729 None:intergenic 50.0%
!!! GGGGACGTCACTTTTGCAAA+AGG + chr1_2:23824725-23824744 None:intergenic 50.0%
!!! TCCCCCCATTGATTTTGACC+AGG - chr1_2:23824740-23824759 Msa0063400:intron 50.0%
!! GATTTTGACCAGGTCAACGC+CGG - chr1_2:23824750-23824769 Msa0063400:intron 50.0%
!! ATTTTGACCAGGTCAACGCC+GGG - chr1_2:23824751-23824770 Msa0063400:intron 50.0%
!! TAATTTTGGCCTCCCAACCC+CGG + chr1_2:23824772-23824791 None:intergenic 50.0%
GCTCCTCAACTTACACAGCT+CGG + chr1_2:23824826-23824845 None:intergenic 50.0%
!! TGTCCCCCTTGATTTTGACC+AGG + chr1_2:23824926-23824945 None:intergenic 50.0%
! CACTTTTGCAAAAGGGGCCA+CGG - chr1_2:23824947-23824966 Msa0063400:intron 50.0%
!! TCGCCGGTTTGTGAAAGTTG+GGG - chr1_2:23824984-23825003 Msa0063400:intron 50.0%
TGGCCCCAACTTTCACAAAC+CGG + chr1_2:23824990-23825009 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG - chr1_2:23825211-23825230 Msa0063400:five_prime_UTR 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr1_2:23825212-23825231 Msa0063400:five_prime_UTR 50.0%
TGTGTGACACCGACGTATGT+CGG - chr1_2:23825676-23825695 Msa0063400:five_prime_UTR 50.0%
ACCGACGTATGTCGGATACT+AGG - chr1_2:23825684-23825703 Msa0063400:five_prime_UTR 50.0%
GCCTAGTATCCGACATACGT+CGG + chr1_2:23825688-23825707 None:intergenic 50.0%
CCACCAAACAGAGAAACACG+AGG + chr1_2:23826677-23826696 None:intergenic 50.0%
CCTCGTGTTTCTCTGTTTGG+TGG - chr1_2:23826674-23826693 Msa0063400:intron 50.0%
AACGGAGCGATCAGATGAAG+AGG - chr1_2:23828573-23828592 Msa0063400:five_prime_UTR 50.0%
ACGGAGCGATCAGATGAAGA+GGG - chr1_2:23828574-23828593 Msa0063400:five_prime_UTR 50.0%
ACCATCAGGCCAACCCATGT+GGG + chr1_2:23823213-23823232 None:intergenic 55.0%
TACCATCAGGCCAACCCATG+TGG + chr1_2:23823214-23823233 None:intergenic 55.0%
! GAGGAGTGTGCTCCTCCTAA+AGG - chr1_2:23823250-23823269 Msa0063400:three_prime_UTR 55.0%
AGCCCACCAAATTGGCACTG+AGG + chr1_2:23823291-23823310 None:intergenic 55.0%
ACGCGGGATTCCAACCCAAT+TGG + chr1_2:23823454-23823473 None:intergenic 55.0%
TATGGGGAATGGGTGGATCC+GGG - chr1_2:23823530-23823549 Msa0063400:CDS 55.0%
CCAAGGATTTCGAGAGCCAG+TGG + chr1_2:23824048-23824067 None:intergenic 55.0%
!! CCACTGGCTCTCGAAATCCT+TGG - chr1_2:23824045-23824064 Msa0063400:intron 55.0%
! TTTTGACCAGGTCAACGCCG+GGG - chr1_2:23824752-23824771 Msa0063400:intron 55.0%
TCGCCGAGCTGTGTAAGTTG+AGG - chr1_2:23824820-23824839 Msa0063400:intron 55.0%
! TGTCCACGTATGCGTTGACC+TGG - chr1_2:23824905-23824924 Msa0063400:intron 55.0%
TGACCAGGTCAACGCATACG+TGG + chr1_2:23824911-23824930 None:intergenic 55.0%
TTTGCAAAAGGGGCCACGGT+TGG - chr1_2:23824951-23824970 Msa0063400:intron 55.0%
TTGCAAAAGGGGCCACGGTT+GGG - chr1_2:23824952-23824971 Msa0063400:intron 55.0%
ACATTGACCCAAGTCGGGAC+CGG + chr1_2:23825222-23825241 None:intergenic 55.0%
TCCAATGGACGTGTGCACCT+CGG + chr1_2:23826333-23826352 None:intergenic 55.0%
CGGAGCGATCAGATGAAGAG+GGG - chr1_2:23828575-23828594 Msa0063400:five_prime_UTR 55.0%
GGAGCGATCAGATGAAGAGG+GGG - chr1_2:23828576-23828595 Msa0063400:five_prime_UTR 55.0%
!!! TTTTTCAGGGAGGGCTAGGG+AGG - chr1_2:23828800-23828819 Msa0063400:intron 55.0%
CCATCAGGCCAACCCATGTG+GGG + chr1_2:23823212-23823231 None:intergenic 60.0%
AACCACAATCGGCGCTTCCC+AGG + chr1_2:23824414-23824433 None:intergenic 60.0%
!! CGATTTTGGCCACCCAACCG+TGG + chr1_2:23824967-23824986 None:intergenic 60.0%
GGTTGGGTGGCCAAAATCGC+CGG - chr1_2:23824968-23824987 Msa0063400:intron 60.0%
TCCGAGGTGCACACGTCCAT+TGG - chr1_2:23826329-23826348 Msa0063400:intron 60.0%
!! CCCCACATGGGTTGGCCTGA+TGG - chr1_2:23823209-23823228 Msa0063400:three_prime_UTR 65.0%
!! AGCCTGGGAAGCGCCGATTG+TGG - chr1_2:23824409-23824428 Msa0063400:intron 65.0%
ACCAGGTCAACGCCGGGGTT+GGG - chr1_2:23824757-23824776 Msa0063400:intron 65.0%
CAAAAGGGGCCACGGTTGGG+TGG - chr1_2:23824955-23824974 Msa0063400:intron 65.0%
GACCAGGTCAACGCCGGGGT+TGG - chr1_2:23824756-23824775 Msa0063400:intron 70.0%
!! TCCCAACCCCGGCGTTGACC+TGG + chr1_2:23824761-23824780 None:intergenic 70.0%
AGGTCAACGCCGGGGTTGGG+AGG - chr1_2:23824760-23824779 Msa0063400:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 23823143 23828865 23823143 ID=Msa0063400;Name=Msa0063400
chr1_2 mRNA 23823143 23828865 23823143 ID=Msa0063400-mRNA-1;Parent=Msa0063400;Name=Msa0063400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=2221|1|1|1|0.75|0.4|5|136|213
chr1_2 exon 23823143 23823878 23823143 ID=Msa0063400-mRNA-1:exon:8597;Parent=Msa0063400-mRNA-1
chr1_2 exon 23825031 23825796 23825031 ID=Msa0063400-mRNA-1:exon:8596;Parent=Msa0063400-mRNA-1
chr1_2 exon 23825921 23826196 23825921 ID=Msa0063400-mRNA-1:exon:8595;Parent=Msa0063400-mRNA-1
chr1_2 exon 23827538 23828695 23827538 ID=Msa0063400-mRNA-1:exon:8594;Parent=Msa0063400-mRNA-1
chr1_2 exon 23828803 23828865 23828803 ID=Msa0063400-mRNA-1:exon:8593;Parent=Msa0063400-mRNA-1
chr1_2 five_prime_UTR 23828803 23828865 23828803 ID=Msa0063400-mRNA-1:five_prime_utr;Parent=Msa0063400-mRNA-1
chr1_2 five_prime_UTR 23827538 23828695 23827538 ID=Msa0063400-mRNA-1:five_prime_utr;Parent=Msa0063400-mRNA-1
chr1_2 five_prime_UTR 23825921 23826196 23825921 ID=Msa0063400-mRNA-1:five_prime_utr;Parent=Msa0063400-mRNA-1
chr1_2 five_prime_UTR 23825073 23825796 23825073 ID=Msa0063400-mRNA-1:five_prime_utr;Parent=Msa0063400-mRNA-1
chr1_2 CDS 23825031 23825072 23825031 ID=Msa0063400-mRNA-1:cds;Parent=Msa0063400-mRNA-1
chr1_2 CDS 23823279 23823878 23823279 ID=Msa0063400-mRNA-1:cds;Parent=Msa0063400-mRNA-1
chr1_2 three_prime_UTR 23823143 23823278 23823143 ID=Msa0063400-mRNA-1:three_prime_utr;Parent=Msa0063400-mRNA-1
Gene Sequence

>Msa0063400

ATGGGAAGTTCCCATGATTCTCTTGGGAATAGCTTAGCACAGGGATTGGCAACCAATTCTAGTGATTCTTTCCTTCCGAGTGACAATTATCCTTCTTGGTTAGCCTATACATGTGAAGGACCTTCTGTACTTTTCCAAGTGCCTGAGGATAGTGATTGTTGCATGAAAGGAATAACTTTGTGTGTTCTTTATTCATCAACACTTGGAAACGTGGCAAATGAATGTGTCACTAGTGTCTTGATCATTAACTACACAAAACTCACTATCCAGATTTACAAGCAAGACACAGTAATGTCGTTTAATGATGAAGATTGGAAAGGTGTAGTATCAAATTTAGGAGTTGGTGACAATGTGGAGATATTTGTAGCTATTGGACATGGGTTGACTGTTAAGGAGACGGCTGTCTATCTAATATATGACCCATCGACTGACACAAAAATTGAGCCATTACATGAAGTAGAAATGCAACCATCATCTAATGTGAAAACGGAGCGATCAGATGAAGAGGGGGTAAAACCATCACCTGATATGAGAATAGAACCATCACTTGTTGTCAAGAATGGACCATTACCAGCGACAAATAGAATCTTTACAAGATTTGCAAAGAGAGTGGGAAAATGTTTATGCTTGAACAAAAATTGA
Protein sequence

>Msa0063400

MGSSHDSLGNSLAQGLATNSSDSFLPSDNYPSWLAYTCEGPSVLFQVPEDSDCCMKGITLCVLYSSTLGNVANECVTSVLIINYTKLTIQIYKQDTVMSFNDEDWKGVVSNLGVGDNVEIFVAIGHGLTVKETAVYLIYDPSTDTKIEPLHEVEMQPSSNVKTERSDEEGVKPSPDMRIEPSLVVKNGPLPATNRIFTRFAKRVGKCLCLNKN*