Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063820 | XP_013455380.1 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063820 | A0A072UJ26 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063820 | Msa0675220 | 0.908040 | 2.638060e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063820 | MtrunA17_Chr4g0018611 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Msa0063820 | MtrunA17_Chr1g0190271 | 38.065 | 310 | 151 | 13 | 2 | 307 | 6 | 278 | 2.66e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063820 | AT4G25180.1 | 39.308 | 318 | 147 | 13 | 5 | 308 | 15 | 300 | 7.82e-49 | 166 |
| Msa0063820 | AT5G09380.2 | 37.654 | 324 | 139 | 14 | 1 | 313 | 1 | 272 | 3.09e-47 | 160 |
| Msa0063820 | AT5G09380.1 | 45.876 | 194 | 86 | 7 | 125 | 313 | 37 | 216 | 1.23e-44 | 152 |
| Msa0063820 | AT5G09380.3 | 36.000 | 275 | 117 | 12 | 1 | 266 | 1 | 225 | 3.79e-33 | 122 |
Find 85 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGCTTCAATGTTTA+TGG | 0.052534 | 1_2:+24561114 | Msa0063820:three_prime_UTR |
| ATTCTTGATAAGATAGAATT+TGG | 0.136497 | 1_2:+24560101 | Msa0063820:CDS |
| TTTATCATCAGCAGAAAATT+TGG | 0.182176 | 1_2:-24559509 | None:intergenic |
| CACGATTCATCACCATTATA+AGG | 0.258930 | 1_2:+24560877 | Msa0063820:three_prime_UTR |
| TGTAATTTGTTCTCTTGTAT+TGG | 0.277119 | 1_2:-24561186 | None:intergenic |
| AGCATCAGCAAAGGCGAAAA+AGG | 0.277394 | 1_2:+24560392 | Msa0063820:CDS |
| GGAGCTTCCGAGTGGATATA+TGG | 0.286921 | 1_2:+24560428 | Msa0063820:CDS |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.292912 | 1_2:-24559760 | None:intergenic |
| AGTTCGTGTACGTAGCTTAT+TGG | 0.293904 | 1_2:+24557802 | Msa0063820:CDS |
| CTTAATTCCGCAGCAGAACT+TGG | 0.309638 | 1_2:+24560161 | Msa0063820:CDS |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.328445 | 1_2:+24559760 | Msa0063820:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.337508 | 1_2:+24560102 | Msa0063820:CDS |
| CAAACCTGGATCTCCAGAAT+TGG | 0.341119 | 1_2:-24559773 | None:intergenic |
| CGCCTTTGCTGATGCTTTCG+AGG | 0.349983 | 1_2:-24560385 | None:intergenic |
| ATCTTGATCAAGTATAGTTT+TGG | 0.351285 | 1_2:-24560719 | None:intergenic |
| TACTTCTGTGATAGATGTTA+TGG | 0.351570 | 1_2:+24559576 | Msa0063820:CDS |
| CGCAGCAGAACTTGGGCTCT+TGG | 0.353607 | 1_2:+24560169 | Msa0063820:CDS |
| ACCTTTCGTGGAGTTCTGTT+TGG | 0.361798 | 1_2:-24557520 | None:intergenic |
| GTTTGGATCTTTCTTATCCA+TGG | 0.365988 | 1_2:-24557503 | None:intergenic |
| AGATCAATGGCATCAATATC+AGG | 0.368015 | 1_2:-24560820 | None:intergenic |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 1_2:+24560360 | Msa0063820:CDS |
| TCACTTTCACTGAGATCATT+TGG | 0.383113 | 1_2:+24559448 | Msa0063820:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.389526 | 1_2:-24560351 | None:intergenic |
| CCTGTGTGGCTTATGTGAAT+AGG | 0.404339 | 1_2:+24560914 | Msa0063820:three_prime_UTR |
| AATTTGTTCTCTTGTATTGG+AGG | 0.409168 | 1_2:-24561183 | None:intergenic |
| AAGAAAAGCTACAGTGTTGT+TGG | 0.412396 | 1_2:+24560763 | Msa0063820:CDS |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 1_2:+24559746 | Msa0063820:CDS |
| ACGATTCATCACCATTATAA+GGG | 0.419263 | 1_2:+24560878 | Msa0063820:three_prime_UTR |
| GGATAGTTTGAGTTTGTGTC+AGG | 0.427676 | 1_2:-24559727 | None:intergenic |
| AGTTTGTTTAGTACCTTTCG+TGG | 0.435246 | 1_2:-24557532 | None:intergenic |
| CTGTGTGGCTTATGTGAATA+GGG | 0.435899 | 1_2:+24560915 | Msa0063820:three_prime_UTR |
| AGTTTGTACTTCCAATCATC+AGG | 0.441189 | 1_2:-24560969 | None:intergenic |
| CAGCTCAAGTTTATTCCAAA+GGG | 0.441221 | 1_2:+24557627 | Msa0063820:intron |
| TCTGTACTGTCCCCTTATAA+TGG | 0.441505 | 1_2:-24560889 | None:intergenic |
| TAAAACTAGTATGACATTGT+TGG | 0.449476 | 1_2:+24560998 | Msa0063820:three_prime_UTR |
| AGCAACCAGTGAACAGTAAA+GGG | 0.453368 | 1_2:+24560346 | Msa0063820:CDS |
| GCCATTGATCTTGAATCCAT+TGG | 0.463045 | 1_2:+24560832 | Msa0063820:CDS |
| AAACCTGGATCTCCAGAATT+GGG | 0.469834 | 1_2:-24559772 | None:intergenic |
| ACTAGAGATATCCTGATGAT+TGG | 0.470710 | 1_2:+24560958 | Msa0063820:three_prime_UTR |
| AACACATTCTTCAACTGCTA+TGG | 0.470804 | 1_2:+24559540 | Msa0063820:CDS |
| AGATCATTTGGCAGTGGCAG+TGG | 0.473266 | 1_2:+24559460 | Msa0063820:CDS |
| AAGCCCAATTCTGGAGATCC+AGG | 0.473812 | 1_2:+24559769 | Msa0063820:CDS |
| AAATGCATCTCGCGCAGCAC+TGG | 0.480195 | 1_2:-24559413 | None:intergenic |
| GGGTGGAACTTACATCATAC+AGG | 0.486199 | 1_2:-24560503 | None:intergenic |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 1_2:-24559748 | None:intergenic |
| TCCAATGGATTCAAGATCAA+TGG | 0.494630 | 1_2:-24560833 | None:intergenic |
| AAGCTACAGTGTTGTTGGAA+AGG | 0.501929 | 1_2:+24560768 | Msa0063820:CDS |
| TTTGGCAGTGGCAGTGGTAA+TGG | 0.504694 | 1_2:+24559466 | Msa0063820:CDS |
| TGGATATATGGGCAAAATGC+AGG | 0.505913 | 1_2:+24560440 | Msa0063820:CDS |
| ATTTATGTGAATTGCTCTGT+AGG | 0.509118 | 1_2:+24561036 | Msa0063820:three_prime_UTR |
| TTTCTCATATAGGTATCTCC+AGG | 0.514422 | 1_2:+24560694 | Msa0063820:intron |
| AAGCAACCAGTGAACAGTAA+AGG | 0.517583 | 1_2:+24560345 | Msa0063820:CDS |
| ACAGCTCAAGTTTATTCCAA+AGG | 0.522946 | 1_2:+24557626 | Msa0063820:intron |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 1_2:+24559032 | Msa0063820:intron |
| TTAATTCCGCAGCAGAACTT+GGG | 0.538505 | 1_2:+24560162 | Msa0063820:CDS |
| GAGCTTCCGAGTGGATATAT+GGG | 0.539303 | 1_2:+24560429 | Msa0063820:CDS |
| GACATTGTTGGAATATCAAG+TGG | 0.548114 | 1_2:+24561010 | Msa0063820:three_prime_UTR |
| TTCACTGGTTGCTTGACACA+AGG | 0.560755 | 1_2:-24560336 | None:intergenic |
| AGTGAAAGTGATGAATCTCT+AGG | 0.578456 | 1_2:-24559436 | None:intergenic |
| AAAGGTTACAGTTGACGCAA+AGG | 0.581529 | 1_2:+24560786 | Msa0063820:CDS |
| ACCAGTGAACAGTAAAGGGA+AGG | 0.581704 | 1_2:+24560350 | Msa0063820:CDS |
| CGTCTTCTTCAGCAAAGCCA+TGG | 0.585581 | 1_2:+24557486 | Msa0063820:exon |
| AATGAAATATTATCAGACAT+TGG | 0.586957 | 1_2:-24561097 | None:intergenic |
| TCACTGAGATCATTTGGCAG+TGG | 0.587322 | 1_2:+24559454 | Msa0063820:CDS |
| GCCACTGATGTGAAATATGA+TGG | 0.589781 | 1_2:+24560131 | Msa0063820:CDS |
| ATGAAGACTACACGGAACCA+TGG | 0.591028 | 1_2:+24559614 | Msa0063820:CDS |
| CACTGATGATGAAGACTACA+CGG | 0.591091 | 1_2:+24559606 | Msa0063820:CDS |
| CGTGTAGTCTTCATCATCAG+TGG | 0.592625 | 1_2:-24559605 | None:intergenic |
| TCTTGATAAGATAGAATTTG+GGG | 0.600434 | 1_2:+24560103 | Msa0063820:CDS |
| TTGACACAAGGCAGAACAGT+AGG | 0.608176 | 1_2:-24560324 | None:intergenic |
| ACCATCATATTTCACATCAG+TGG | 0.608501 | 1_2:-24560132 | None:intergenic |
| CGATTCATCACCATTATAAG+GGG | 0.621243 | 1_2:+24560879 | Msa0063820:three_prime_UTR |
| TGAAGACTACACGGAACCAT+GGG | 0.628361 | 1_2:+24559615 | Msa0063820:CDS |
| GATGATTGGAAGTACAAACT+AGG | 0.628515 | 1_2:+24560972 | Msa0063820:three_prime_UTR |
| TCCAAACAGAACTCCACGAA+AGG | 0.631732 | 1_2:+24557519 | Msa0063820:CDS |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 1_2:+24560106 | Msa0063820:CDS |
| CCTATTCACATAAGCCACAC+AGG | 0.638642 | 1_2:-24560914 | None:intergenic |
| CAAGAGCCCAAGTTCTGCTG+CGG | 0.648219 | 1_2:-24560168 | None:intergenic |
| AAAATGCAGGTGTATAAGAG+TGG | 0.654564 | 1_2:+24560453 | Msa0063820:CDS |
| TACCTCGAAAGCATCAGCAA+AGG | 0.671558 | 1_2:+24560383 | Msa0063820:CDS |
| GGTGGAACTTACATCATACA+GGG | 0.675680 | 1_2:-24560502 | None:intergenic |
| AACTTGCTGGAGCTTCCGAG+TGG | 0.683172 | 1_2:+24560420 | Msa0063820:CDS |
| AGCTTAAAGAAAATCAACTG+TGG | 0.715988 | 1_2:-24560300 | None:intergenic |
| AGTGGTAATGGTGAAAGCAG+TGG | 0.718273 | 1_2:+24559478 | Msa0063820:CDS |
| GGACAGTACAGATACCTGTG+TGG | 0.783220 | 1_2:+24560900 | Msa0063820:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTTTTGAAATAATAAT+CGG | + | chr1_2:24557704-24557723 | Msa0063820:intron | 10.0% |
| !!! | AATTATTTTAGTTTTATTCT+TGG | + | chr1_2:24558148-24558167 | Msa0063820:intron | 10.0% |
| !!! | ATTTTTTATATGGTAAAAAT+TGG | + | chr1_2:24558186-24558205 | Msa0063820:intron | 10.0% |
| !! | TACTTAAAAAATTACTTAAA+AGG | - | chr1_2:24558379-24558398 | None:intergenic | 10.0% |
| !!! | ATGTACAAATTATTTTATTG+TGG | + | chr1_2:24558065-24558084 | Msa0063820:intron | 15.0% |
| !!! | TTAATATAATTTGTGTTTCT+TGG | + | chr1_2:24558100-24558119 | Msa0063820:intron | 15.0% |
| !!! | TTAGGAGAATATTTTTTATA+TGG | + | chr1_2:24558176-24558195 | Msa0063820:intron | 15.0% |
| !! | AATTTGACATAAGAAATTTA+TGG | - | chr1_2:24558326-24558345 | None:intergenic | 15.0% |
| !!! | TACATTGTTTTTTTCAAATT+TGG | + | chr1_2:24558348-24558367 | Msa0063820:intron | 15.0% |
| !! | TAGAATATAATAACAAGATA+TGG | - | chr1_2:24558818-24558837 | None:intergenic | 15.0% |
| !! | CAATATATAGATAAAACAAA+TGG | - | chr1_2:24559021-24559040 | None:intergenic | 15.0% |
| !! | AACCAAATATTATATAGAAA+TGG | - | chr1_2:24560040-24560059 | None:intergenic | 15.0% |
| !!! | TTATGTGTTGATTTTTAATA+TGG | + | chr1_2:24560073-24560092 | Msa0063820:intron | 15.0% |
| !! | GAAATGTGTTGAATAAAAAT+CGG | + | chr1_2:24557988-24558007 | Msa0063820:intron | 20.0% |
| !!! | GTTTTATTCTTGGTTAATTT+AGG | + | chr1_2:24558158-24558177 | Msa0063820:intron | 20.0% |
| !! | AAAGTGAAATCTTTATATCT+TGG | - | chr1_2:24558259-24558278 | None:intergenic | 20.0% |
| !!! | AGATATAAAGATTTCACTTT+TGG | + | chr1_2:24558259-24558278 | Msa0063820:intron | 20.0% |
| !!! | CAGGTAATTGAAATTTTTTA+AGG | + | chr1_2:24558291-24558310 | Msa0063820:intron | 20.0% |
| !!! | TTTGCTGTTGATTAAATTTT+CGG | - | chr1_2:24558437-24558456 | None:intergenic | 20.0% |
| !!! | AAATCGTGAATACATTTTTA+CGG | - | chr1_2:24558642-24558661 | None:intergenic | 20.0% |
| !! | TATAATACTATGATAGCATT+TGG | - | chr1_2:24558909-24558928 | None:intergenic | 20.0% |
| !! | TGCTAAAATATATCTAAAAG+TGG | + | chr1_2:24558938-24558957 | Msa0063820:intron | 20.0% |
| !!! | TTGTTTTATCTATATATTGC+AGG | + | chr1_2:24559022-24559041 | Msa0063820:intron | 20.0% |
| !! | TATTTCATAATTGTGATGTT+GGG | + | chr1_2:24559143-24559162 | Msa0063820:intron | 20.0% |
| !! | AAACTTCTTTGTAAAGAAAA+TGG | - | chr1_2:24559232-24559251 | None:intergenic | 20.0% |
| !!! | CAAAACAAATAAAGCTTTTA+AGG | + | chr1_2:24559801-24559820 | Msa0063820:intron | 20.0% |
| !! | AGCCATTTCTATATAATATT+TGG | + | chr1_2:24560035-24560054 | Msa0063820:intron | 20.0% |
| !! | ATTCTTGATAAGATAGAATT+TGG | + | chr1_2:24560101-24560120 | Msa0063820:CDS | 20.0% |
| !! | TTCTTGATAAGATAGAATTT+GGG | + | chr1_2:24560102-24560121 | Msa0063820:CDS | 20.0% |
| !!! | TACATAGAAAATTTTTCTTC+AGG | + | chr1_2:24560263-24560282 | Msa0063820:intron | 20.0% |
| !! | TCAGTAAATATATGGTAAAT+GGG | - | chr1_2:24560527-24560546 | None:intergenic | 20.0% |
| !! | TTCAGTAAATATATGGTAAA+TGG | - | chr1_2:24560528-24560547 | None:intergenic | 20.0% |
| !! | TACTTCATTCAGTAAATATA+TGG | - | chr1_2:24560535-24560554 | None:intergenic | 20.0% |
| !! | TGGTATAATAACCAAAATAT+GGG | - | chr1_2:24560632-24560651 | None:intergenic | 20.0% |
| !! | ATGGTATAATAACCAAAATA+TGG | - | chr1_2:24560633-24560652 | None:intergenic | 20.0% |
| !! | TCAACAATCAATGTTAAAAA+TGG | - | chr1_2:24560652-24560671 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGTTTCTCATAT+AGG | + | chr1_2:24560684-24560703 | Msa0063820:intron | 20.0% |
| !! | AATGAAATATTATCAGACAT+TGG | - | chr1_2:24561100-24561119 | None:intergenic | 20.0% |
| !! | TTTTCAGAGGAAGTAATTTT+GGG | - | chr1_2:24557564-24557583 | None:intergenic | 25.0% |
| !!! | ATTTTCGTTGTTTGAGATTT+GGG | - | chr1_2:24557657-24557676 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTACAGTGAAGC+TGG | + | chr1_2:24557752-24557771 | Msa0063820:intron | 25.0% |
| ! | TTGGTTAAAAATTAGCTAGT+CGG | - | chr1_2:24558240-24558259 | None:intergenic | 25.0% |
| ! | TTTAATCAACAGCAAAAACA+TGG | + | chr1_2:24558441-24558460 | Msa0063820:intron | 25.0% |
| ! | TAACTCGCTATAATAGATTT+AGG | + | chr1_2:24558609-24558628 | Msa0063820:intron | 25.0% |
| ! | AACTCGCTATAATAGATTTA+GGG | + | chr1_2:24558610-24558629 | Msa0063820:intron | 25.0% |
| !! | AATCGTGAATACATTTTTAC+GGG | - | chr1_2:24558641-24558660 | None:intergenic | 25.0% |
| !! | ATGTAGCTTCTAAAAAATCA+CGG | - | chr1_2:24558733-24558752 | None:intergenic | 25.0% |
| !!! | TTTTAGAAGCTACATTGTAT+AGG | + | chr1_2:24558738-24558757 | Msa0063820:intron | 25.0% |
| ! | ACACTGTACAAATATATTCA+GGG | - | chr1_2:24558775-24558794 | None:intergenic | 25.0% |
| !!! | TTACATTGTTTTGCAACTTT+AGG | - | chr1_2:24559068-24559087 | None:intergenic | 25.0% |
| !! | ATGTCTTTTGACATATAAAG+TGG | - | chr1_2:24559101-24559120 | None:intergenic | 25.0% |
| ! | CTATTTCATAATTGTGATGT+TGG | + | chr1_2:24559142-24559161 | Msa0063820:intron | 25.0% |
| !! | TAGCAAAAATCATTTTACCA+TGG | + | chr1_2:24559271-24559290 | Msa0063820:intron | 25.0% |
| !!! | GTCAAAGTAATTTTTTTCCA+TGG | - | chr1_2:24559291-24559310 | None:intergenic | 25.0% |
| ! | AGAATATCTTAGATTCTATG+TGG | + | chr1_2:24559318-24559337 | Msa0063820:intron | 25.0% |
| !!! | ATTCTAAAACACTTTCCTTT+TGG | + | chr1_2:24559374-24559393 | Msa0063820:intron | 25.0% |
| ! | TTTATCATCAGCAGAAAATT+TGG | - | chr1_2:24559512-24559531 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGATGATAAATA+TGG | + | chr1_2:24559514-24559533 | Msa0063820:CDS | 25.0% |
| !!! | TTTGTTTTGTTTATCAAACC+TGG | - | chr1_2:24559790-24559809 | None:intergenic | 25.0% |
| !!! | TGTTTCTAACACTTTTCTTA+AGG | + | chr1_2:24559998-24560017 | Msa0063820:intron | 25.0% |
| ! | TCTTGATAAGATAGAATTTG+GGG | + | chr1_2:24560103-24560122 | Msa0063820:CDS | 25.0% |
| ! | CAGTAAATATATGGTAAATG+GGG | - | chr1_2:24560526-24560545 | None:intergenic | 25.0% |
| ! | GAATCACAATTAAACTAACT+TGG | - | chr1_2:24560558-24560577 | None:intergenic | 25.0% |
| !!! | AAATATGGGATAGCTTTTTT+GGG | - | chr1_2:24560618-24560637 | None:intergenic | 25.0% |
| !!! | AAAATATGGGATAGCTTTTT+TGG | - | chr1_2:24560619-24560638 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATCCCATATTT+TGG | + | chr1_2:24560618-24560637 | Msa0063820:intron | 25.0% |
| !! | TTAACATTGATTGTTGAAGT+TGG | + | chr1_2:24560655-24560674 | Msa0063820:intron | 25.0% |
| !! | ATCTTGATCAAGTATAGTTT+TGG | - | chr1_2:24560722-24560741 | None:intergenic | 25.0% |
| ! | TAAAACTAGTATGACATTGT+TGG | + | chr1_2:24560998-24561017 | Msa0063820:three_prime_UTR | 25.0% |
| ! | TTCATTTGCTTCAATGTTTA+TGG | + | chr1_2:24561114-24561133 | Msa0063820:three_prime_UTR | 25.0% |
| !!! | TGTAATTTGTTCTCTTGTAT+TGG | - | chr1_2:24561189-24561208 | None:intergenic | 25.0% |
| ! | CTTTTCAGAGGAAGTAATTT+TGG | - | chr1_2:24557565-24557584 | None:intergenic | 30.0% |
| !!! | AAAAGAAAAGCACTTTTCAG+AGG | - | chr1_2:24557577-24557596 | None:intergenic | 30.0% |
| !! | CATTTTCGTTGTTTGAGATT+TGG | - | chr1_2:24557658-24557677 | None:intergenic | 30.0% |
| GAAAGATGCATTTATTCACA+TGG | + | chr1_2:24558472-24558491 | Msa0063820:intron | 30.0% | |
| ATTATCTCACTAACTTTCTC+AGG | + | chr1_2:24558522-24558541 | Msa0063820:intron | 30.0% | |
| ACTCGCTATAATAGATTTAG+GGG | + | chr1_2:24558611-24558630 | Msa0063820:intron | 30.0% | |
| TAAGAACTTCAAACTCATTG+TGG | - | chr1_2:24558708-24558727 | None:intergenic | 30.0% | |
| CACTGTACAAATATATTCAG+GGG | - | chr1_2:24558774-24558793 | None:intergenic | 30.0% | |
| CACACTGTACAAATATATTC+AGG | - | chr1_2:24558776-24558795 | None:intergenic | 30.0% | |
| ATACTATGATAGCATTTGGT+AGG | - | chr1_2:24558905-24558924 | None:intergenic | 30.0% | |
| TTATCTATATATTGCAGGAG+AGG | + | chr1_2:24559027-24559046 | Msa0063820:intron | 30.0% | |
| TATCTATATATTGCAGGAGA+GGG | + | chr1_2:24559028-24559047 | Msa0063820:intron | 30.0% | |
| ! | GGGAAGGAAAGATAATATTT+TGG | + | chr1_2:24559163-24559182 | Msa0063820:intron | 30.0% |
| TACTTCTGTGATAGATGTTA+TGG | + | chr1_2:24559576-24559595 | Msa0063820:CDS | 30.0% | |
| ! | TGAACCTTTGATTTAACTAC+AGG | + | chr1_2:24559702-24559721 | Msa0063820:intron | 30.0% |
| TTGCATGAAATTCATCCAAT+AGG | - | chr1_2:24559882-24559901 | None:intergenic | 30.0% | |
| CCGACATTCTCTATTATATT+CGG | - | chr1_2:24559962-24559981 | None:intergenic | 30.0% | |
| CCGAATATAATAGAGAATGT+CGG | + | chr1_2:24559959-24559978 | Msa0063820:intron | 30.0% | |
| AATCAACACATAACTGTTAG+TGG | - | chr1_2:24560066-24560085 | None:intergenic | 30.0% | |
| AGCTTAAAGAAAATCAACTG+TGG | - | chr1_2:24560303-24560322 | None:intergenic | 30.0% | |
| GGAGCAGTCAAATTAAAAAT+AGG | + | chr1_2:24560474-24560493 | Msa0063820:CDS | 30.0% | |
| TAAATATATGGTAAATGGGG+TGG | - | chr1_2:24560523-24560542 | None:intergenic | 30.0% | |
| ! | TTGAGTCTTTTATAGTCCAA+TGG | - | chr1_2:24560851-24560870 | None:intergenic | 30.0% |
| ACGATTCATCACCATTATAA+GGG | + | chr1_2:24560878-24560897 | Msa0063820:three_prime_UTR | 30.0% | |
| ATTTATGTGAATTGCTCTGT+AGG | + | chr1_2:24561036-24561055 | Msa0063820:three_prime_UTR | 30.0% | |
| ! | AATTTGTTCTCTTGTATTGG+AGG | - | chr1_2:24561186-24561205 | None:intergenic | 30.0% |
| GTTTGGATCTTTCTTATCCA+TGG | - | chr1_2:24557506-24557525 | None:intergenic | 35.0% | |
| ! | AGTTTGTTTAGTACCTTTCG+TGG | - | chr1_2:24557535-24557554 | None:intergenic | 35.0% |
| ACAGCTCAAGTTTATTCCAA+AGG | + | chr1_2:24557626-24557645 | Msa0063820:intron | 35.0% | |
| CAGCTCAAGTTTATTCCAAA+GGG | + | chr1_2:24557627-24557646 | Msa0063820:intron | 35.0% | |
| ! | GGTTTTTCATCGTTGAATAG+TGG | + | chr1_2:24557725-24557744 | Msa0063820:intron | 35.0% |
| TTTCGCTTGTCAGAAAGAAT+AGG | + | chr1_2:24557927-24557946 | Msa0063820:intron | 35.0% | |
| GGTAAAAATTGGATGTGTGT+TGG | + | chr1_2:24558197-24558216 | Msa0063820:intron | 35.0% | |
| !! | TCACTTTTGGATTTGTGAAC+AGG | + | chr1_2:24558272-24558291 | Msa0063820:intron | 35.0% |
| ATCAACAGCAAAAACATGGT+AGG | + | chr1_2:24558445-24558464 | Msa0063820:intron | 35.0% | |
| GATGCATTTATTCACATGGT+AGG | + | chr1_2:24558476-24558495 | Msa0063820:intron | 35.0% | |
| !! | ATTGTTTTGCAACTTTAGGC+TGG | - | chr1_2:24559064-24559083 | None:intergenic | 35.0% |
| TCATAATTGTGATGTTGGGA+AGG | + | chr1_2:24559147-24559166 | Msa0063820:intron | 35.0% | |
| !!! | TGCAAGTTTTGAACACCAAA+AGG | - | chr1_2:24559392-24559411 | None:intergenic | 35.0% |
| AGTGAAAGTGATGAATCTCT+AGG | - | chr1_2:24559439-24559458 | None:intergenic | 35.0% | |
| TCACTTTCACTGAGATCATT+TGG | + | chr1_2:24559448-24559467 | Msa0063820:CDS | 35.0% | |
| AACACATTCTTCAACTGCTA+TGG | + | chr1_2:24559540-24559559 | Msa0063820:CDS | 35.0% | |
| TGATAAGAATTTCTCACCCA+TGG | - | chr1_2:24559634-24559653 | None:intergenic | 35.0% | |
| CAAAGGTTCAGATGCTTATA+TGG | - | chr1_2:24559692-24559711 | None:intergenic | 35.0% | |
| GGATCCTGTAGTTAAATCAA+AGG | - | chr1_2:24559709-24559728 | None:intergenic | 35.0% | |
| TCCAATAGGTGATAGTTTGA+CGG | - | chr1_2:24559868-24559887 | None:intergenic | 35.0% | |
| TGATAAGATAGAATTTGGGG+AGG | + | chr1_2:24560106-24560125 | Msa0063820:CDS | 35.0% | |
| ACCATCATATTTCACATCAG+TGG | - | chr1_2:24560135-24560154 | None:intergenic | 35.0% | |
| TTCAGCTGCATAATGATAGT+AGG | - | chr1_2:24560228-24560247 | None:intergenic | 35.0% | |
| AGTAAAGGGAAGGAGAAAAT+TGG | + | chr1_2:24560360-24560379 | Msa0063820:CDS | 35.0% | |
| ! | ATTTTGCCCATATATCCACT+CGG | - | chr1_2:24560438-24560457 | None:intergenic | 35.0% |
| AAAATGCAGGTGTATAAGAG+TGG | + | chr1_2:24560453-24560472 | Msa0063820:CDS | 35.0% | |
| TTTCTCATATAGGTATCTCC+AGG | + | chr1_2:24560694-24560713 | Msa0063820:intron | 35.0% | |
| !!! | TCAAGTATAGTTTTGGTACC+TGG | - | chr1_2:24560715-24560734 | None:intergenic | 35.0% |
| AAGAAAAGCTACAGTGTTGT+TGG | + | chr1_2:24560763-24560782 | Msa0063820:CDS | 35.0% | |
| AGATCAATGGCATCAATATC+AGG | - | chr1_2:24560823-24560842 | None:intergenic | 35.0% | |
| ! | TCCAATGGATTCAAGATCAA+TGG | - | chr1_2:24560836-24560855 | None:intergenic | 35.0% |
| CACGATTCATCACCATTATA+AGG | + | chr1_2:24560877-24560896 | Msa0063820:three_prime_UTR | 35.0% | |
| CGATTCATCACCATTATAAG+GGG | + | chr1_2:24560879-24560898 | Msa0063820:three_prime_UTR | 35.0% | |
| ACTAGAGATATCCTGATGAT+TGG | + | chr1_2:24560958-24560977 | Msa0063820:three_prime_UTR | 35.0% | |
| AGTTTGTACTTCCAATCATC+AGG | - | chr1_2:24560972-24560991 | None:intergenic | 35.0% | |
| ! | GATGATTGGAAGTACAAACT+AGG | + | chr1_2:24560972-24560991 | Msa0063820:three_prime_UTR | 35.0% |
| GACATTGTTGGAATATCAAG+TGG | + | chr1_2:24561010-24561029 | Msa0063820:three_prime_UTR | 35.0% | |
| ! | TGGAGGTTAGAGATTTTCAA+AGG | - | chr1_2:24561169-24561188 | None:intergenic | 35.0% |
| !! | TGAGATTTGGGTTTTCCCTT+TGG | - | chr1_2:24557645-24557664 | None:intergenic | 40.0% |
| AGTTCGTGTACGTAGCTTAT+TGG | + | chr1_2:24557802-24557821 | Msa0063820:CDS | 40.0% | |
| TTCACATGGTAGGTTACAGT+AGG | + | chr1_2:24558486-24558505 | Msa0063820:intron | 40.0% | |
| ! | GGTAGGTTACAGTAGGTTTT+TGG | + | chr1_2:24558493-24558512 | Msa0063820:intron | 40.0% |
| ATGATAGCATTTGGTAGGAC+AGG | - | chr1_2:24558900-24558919 | None:intergenic | 40.0% | |
| TATATATTGCAGGAGAGGGT+TGG | + | chr1_2:24559032-24559051 | Msa0063820:intron | 40.0% | |
| TTTATCATTGTGACCAGAGC+AGG | - | chr1_2:24559344-24559363 | None:intergenic | 40.0% | |
| ! | CACTGATGATGAAGACTACA+CGG | + | chr1_2:24559606-24559625 | Msa0063820:CDS | 40.0% |
| TGGATGAGAAAGATGCAGAT+AGG | - | chr1_2:24559672-24559691 | None:intergenic | 40.0% | |
| ! | GGATAGTTTGAGTTTGTGTC+AGG | - | chr1_2:24559730-24559749 | None:intergenic | 40.0% |
| ATCCTACTACTCTTCCTCTA+AGG | + | chr1_2:24559746-24559765 | Msa0063820:CDS | 40.0% | |
| TTCCTTAGAGGAAGAGTAGT+AGG | - | chr1_2:24559751-24559770 | None:intergenic | 40.0% | |
| AAACCTGGATCTCCAGAATT+GGG | - | chr1_2:24559775-24559794 | None:intergenic | 40.0% | |
| TCCGTCAAACTATCACCTAT+TGG | + | chr1_2:24559864-24559883 | Msa0063820:intron | 40.0% | |
| GCCACTGATGTGAAATATGA+TGG | + | chr1_2:24560131-24560150 | Msa0063820:CDS | 40.0% | |
| TTAATTCCGCAGCAGAACTT+GGG | + | chr1_2:24560162-24560181 | Msa0063820:CDS | 40.0% | |
| AAGCAACCAGTGAACAGTAA+AGG | + | chr1_2:24560345-24560364 | Msa0063820:CDS | 40.0% | |
| AGCAACCAGTGAACAGTAAA+GGG | + | chr1_2:24560346-24560365 | Msa0063820:CDS | 40.0% | |
| TGGATATATGGGCAAAATGC+AGG | + | chr1_2:24560440-24560459 | Msa0063820:CDS | 40.0% | |
| GGTGGAACTTACATCATACA+GGG | - | chr1_2:24560505-24560524 | None:intergenic | 40.0% | |
| ! | AAGCTACAGTGTTGTTGGAA+AGG | + | chr1_2:24560768-24560787 | Msa0063820:CDS | 40.0% |
| AAAGGTTACAGTTGACGCAA+AGG | + | chr1_2:24560786-24560805 | Msa0063820:CDS | 40.0% | |
| GCCATTGATCTTGAATCCAT+TGG | + | chr1_2:24560832-24560851 | Msa0063820:CDS | 40.0% | |
| TCTGTACTGTCCCCTTATAA+TGG | - | chr1_2:24560892-24560911 | None:intergenic | 40.0% | |
| CTGTGTGGCTTATGTGAATA+GGG | + | chr1_2:24560915-24560934 | Msa0063820:three_prime_UTR | 40.0% | |
| TCCAAACAGAACTCCACGAA+AGG | + | chr1_2:24557519-24557538 | Msa0063820:CDS | 45.0% | |
| ACCTTTCGTGGAGTTCTGTT+TGG | - | chr1_2:24557523-24557542 | None:intergenic | 45.0% | |
| TCACTGAGATCATTTGGCAG+TGG | + | chr1_2:24559454-24559473 | Msa0063820:CDS | 45.0% | |
| !! | AGTGGTAATGGTGAAAGCAG+TGG | + | chr1_2:24559478-24559497 | Msa0063820:CDS | 45.0% |
| CGTGTAGTCTTCATCATCAG+TGG | - | chr1_2:24559608-24559627 | None:intergenic | 45.0% | |
| ATGAAGACTACACGGAACCA+TGG | + | chr1_2:24559614-24559633 | Msa0063820:CDS | 45.0% | |
| TGAAGACTACACGGAACCAT+GGG | + | chr1_2:24559615-24559634 | Msa0063820:CDS | 45.0% | |
| CAAACCTGGATCTCCAGAAT+TGG | - | chr1_2:24559776-24559795 | None:intergenic | 45.0% | |
| ATGGGTCCAACATAAAGTGG+CGG | - | chr1_2:24559908-24559927 | None:intergenic | 45.0% | |
| GGAATGGGTCCAACATAAAG+TGG | - | chr1_2:24559911-24559930 | None:intergenic | 45.0% | |
| TGTTGGACCCATTCCCAAAA+TGG | + | chr1_2:24559916-24559935 | Msa0063820:intron | 45.0% | |
| !! | CATGTATGTCCCGCCATTTT+GGG | - | chr1_2:24559932-24559951 | None:intergenic | 45.0% |
| ! | TCATGTATGTCCCGCCATTT+TGG | - | chr1_2:24559933-24559952 | None:intergenic | 45.0% |
| CTTAATTCCGCAGCAGAACT+TGG | + | chr1_2:24560161-24560180 | Msa0063820:CDS | 45.0% | |
| TTGACACAAGGCAGAACAGT+AGG | - | chr1_2:24560327-24560346 | None:intergenic | 45.0% | |
| ! | TTCACTGGTTGCTTGACACA+AGG | - | chr1_2:24560339-24560358 | None:intergenic | 45.0% |
| ACCAGTGAACAGTAAAGGGA+AGG | + | chr1_2:24560350-24560369 | Msa0063820:CDS | 45.0% | |
| TCCTTCCCTTTACTGTTCAC+TGG | - | chr1_2:24560354-24560373 | None:intergenic | 45.0% | |
| !! | TACCTCGAAAGCATCAGCAA+AGG | + | chr1_2:24560383-24560402 | Msa0063820:CDS | 45.0% |
| AGCATCAGCAAAGGCGAAAA+AGG | + | chr1_2:24560392-24560411 | Msa0063820:CDS | 45.0% | |
| ! | GAAAAAGGCGAGTAACTTGC+TGG | + | chr1_2:24560407-24560426 | Msa0063820:CDS | 45.0% |
| GAGCTTCCGAGTGGATATAT+GGG | + | chr1_2:24560429-24560448 | Msa0063820:CDS | 45.0% | |
| GGGTGGAACTTACATCATAC+AGG | - | chr1_2:24560506-24560525 | None:intergenic | 45.0% | |
| CCTATTCACATAAGCCACAC+AGG | - | chr1_2:24560917-24560936 | None:intergenic | 45.0% | |
| CCTGTGTGGCTTATGTGAAT+AGG | + | chr1_2:24560914-24560933 | Msa0063820:three_prime_UTR | 45.0% | |
| CGTCTTCTTCAGCAAAGCCA+TGG | + | chr1_2:24557486-24557505 | Msa0063820:exon | 50.0% | |
| AGATTCTATGTGGCCTGCTC+TGG | + | chr1_2:24559328-24559347 | Msa0063820:intron | 50.0% | |
| AGATCATTTGGCAGTGGCAG+TGG | + | chr1_2:24559460-24559479 | Msa0063820:CDS | 50.0% | |
| TTTGGCAGTGGCAGTGGTAA+TGG | + | chr1_2:24559466-24559485 | Msa0063820:CDS | 50.0% | |
| CCAGAATTGGGCTTCCTTAG+AGG | - | chr1_2:24559763-24559782 | None:intergenic | 50.0% | |
| ! | CCTCTAAGGAAGCCCAATTC+TGG | + | chr1_2:24559760-24559779 | Msa0063820:CDS | 50.0% |
| ! | AAGCCCAATTCTGGAGATCC+AGG | + | chr1_2:24559769-24559788 | Msa0063820:CDS | 50.0% |
| ! | CAAGTCCCGCCACTTTATGT+TGG | + | chr1_2:24559899-24559918 | Msa0063820:intron | 50.0% |
| TGGGTCCAACATAAAGTGGC+GGG | - | chr1_2:24559907-24559926 | None:intergenic | 50.0% | |
| TGGACCCATTCCCAAAATGG+CGG | + | chr1_2:24559919-24559938 | Msa0063820:intron | 50.0% | |
| !! | TGTCCCGCCATTTTGGGAAT+GGG | - | chr1_2:24559926-24559945 | None:intergenic | 50.0% |
| !! | ATGTCCCGCCATTTTGGGAA+TGG | - | chr1_2:24559927-24559946 | None:intergenic | 50.0% |
| GGAGCTTCCGAGTGGATATA+TGG | + | chr1_2:24560428-24560447 | Msa0063820:CDS | 50.0% | |
| GGACAGTACAGATACCTGTG+TGG | + | chr1_2:24560900-24560919 | Msa0063820:three_prime_UTR | 50.0% | |
| AAATGCATCTCGCGCAGCAC+TGG | - | chr1_2:24559416-24559435 | None:intergenic | 55.0% | |
| GGACCCATTCCCAAAATGGC+GGG | + | chr1_2:24559920-24559939 | Msa0063820:intron | 55.0% | |
| CAAGAGCCCAAGTTCTGCTG+CGG | - | chr1_2:24560171-24560190 | None:intergenic | 55.0% | |
| CGCCTTTGCTGATGCTTTCG+AGG | - | chr1_2:24560388-24560407 | None:intergenic | 55.0% | |
| !! | AACTTGCTGGAGCTTCCGAG+TGG | + | chr1_2:24560420-24560439 | Msa0063820:CDS | 55.0% |
| CGCAGCAGAACTTGGGCTCT+TGG | + | chr1_2:24560169-24560188 | Msa0063820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 24557428 | 24561208 | 24557428 | ID=Msa0063820;Name=Msa0063820 |
| chr1_2 | mRNA | 24557428 | 24561208 | 24557428 | ID=Msa0063820-mRNA-1;Parent=Msa0063820;Name=Msa0063820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=77|1|1|1|1|1|9|347|315 |
| chr1_2 | exon | 24557428 | 24557540 | 24557428 | ID=Msa0063820-mRNA-1:exon:8753;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24557630 | 24557676 | 24557630 | ID=Msa0063820-mRNA-1:exon:8754;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24557766 | 24557823 | 24557766 | ID=Msa0063820-mRNA-1:exon:8755;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24559044 | 24559083 | 24559044 | ID=Msa0063820-mRNA-1:exon:8756;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24559413 | 24559636 | 24559413 | ID=Msa0063820-mRNA-1:exon:8757;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24559724 | 24559790 | 24559724 | ID=Msa0063820-mRNA-1:exon:8758;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24560099 | 24560190 | 24560099 | ID=Msa0063820-mRNA-1:exon:8759;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24560285 | 24560512 | 24560285 | ID=Msa0063820-mRNA-1:exon:8760;Parent=Msa0063820-mRNA-1 |
| chr1_2 | exon | 24560706 | 24561208 | 24560706 | ID=Msa0063820-mRNA-1:exon:8761;Parent=Msa0063820-mRNA-1 |
| chr1_2 | five_prime_UTR | 24557428 | 24557504 | 24557428 | ID=Msa0063820-mRNA-1:five_prime_utr;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24557505 | 24557540 | 24557505 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24557630 | 24557676 | 24557630 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24557766 | 24557823 | 24557766 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24559044 | 24559083 | 24559044 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24559413 | 24559636 | 24559413 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24559724 | 24559790 | 24559724 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24560099 | 24560190 | 24560099 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24560285 | 24560512 | 24560285 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | CDS | 24560706 | 24560861 | 24560706 | ID=Msa0063820-mRNA-1:cds;Parent=Msa0063820-mRNA-1 |
| chr1_2 | three_prime_UTR | 24560862 | 24561208 | 24560862 | ID=Msa0063820-mRNA-1:three_prime_utr;Parent=Msa0063820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
