Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675220 | XP_013455380.1 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675220 | A0A072UJ26 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0675220 | 0.804102 | 2.537937e-49 | -8.615850e-47 |
| Msa0063820 | Msa0675220 | 0.908040 | 2.638060e-81 | -8.615850e-47 |
| Msa0101810 | Msa0675220 | -0.807505 | 4.892741e-50 | -8.615850e-47 |
| Msa0110970 | Msa0675220 | 0.802967 | 4.364213e-49 | -8.615850e-47 |
| Msa0675220 | Msa0739120 | 0.814562 | 1.446220e-51 | -8.615850e-47 |
| Msa0675220 | Msa0756630 | -0.820258 | 7.544381e-53 | -8.615850e-47 |
| Msa0675220 | Msa0778320 | 0.803068 | 4.158683e-49 | -8.615850e-47 |
| Msa0675220 | Msa0908050 | 0.813347 | 2.680188e-51 | -8.615850e-47 |
| Msa0675220 | Msa0931720 | 0.815028 | 1.140271e-51 | -8.615850e-47 |
| Msa0675220 | Msa1082500 | 0.813037 | 3.134160e-51 | -8.615850e-47 |
| Msa0675220 | Msa1308380 | 0.800337 | 1.511071e-48 | -8.615850e-47 |
| Msa0675220 | Msa1320740 | 0.805804 | 1.118312e-49 | -8.615850e-47 |
| Msa0675220 | Msa1460020 | 0.801494 | 8.770976e-49 | -8.615850e-47 |
| Msa0410650 | Msa0675220 | 0.801063 | 1.074373e-48 | -8.615850e-47 |
| Msa0311860 | Msa0675220 | 0.802089 | 6.618120e-49 | -8.615850e-47 |
| Msa0334040 | Msa0675220 | 0.806617 | 7.540203e-50 | -8.615850e-47 |
| Msa0356890 | Msa0675220 | -0.810397 | 1.176647e-50 | -8.615850e-47 |
| Msa0507680 | Msa0675220 | 0.801766 | 7.711268e-49 | -8.615850e-47 |
| Msa0509610 | Msa0675220 | 0.807184 | 5.721675e-50 | -8.615850e-47 |
| Msa0521540 | Msa0675220 | 0.805643 | 1.209039e-49 | -8.615850e-47 |
| Msa0558090 | Msa0675220 | 0.801655 | 8.126848e-49 | -8.615850e-47 |
| Msa0574890 | Msa0675220 | 0.805853 | 1.092189e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675220 | MtrunA17_Chr4g0018611 | 94.921 | 315 | 11 | 3 | 1 | 315 | 1 | 310 | 0.0 | 589 |
| Msa0675220 | MtrunA17_Chr1g0190271 | 38.065 | 310 | 151 | 13 | 2 | 307 | 6 | 278 | 2.66e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675220 | AT4G25180.1 | 39.308 | 318 | 147 | 13 | 5 | 308 | 15 | 300 | 7.82e-49 | 166 |
| Msa0675220 | AT5G09380.2 | 37.654 | 324 | 139 | 14 | 1 | 313 | 1 | 272 | 3.09e-47 | 160 |
| Msa0675220 | AT5G09380.1 | 45.876 | 194 | 86 | 7 | 125 | 313 | 37 | 216 | 1.23e-44 | 152 |
| Msa0675220 | AT5G09380.3 | 36.000 | 275 | 117 | 12 | 1 | 266 | 1 | 225 | 3.79e-33 | 122 |
Find 85 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGCTTCAATGTTTA+TGG | 0.052534 | 4_4:+23767429 | Msa0675220:three_prime_UTR |
| ATTCTTGATAAGATAGAATT+TGG | 0.136497 | 4_4:+23766416 | Msa0675220:CDS |
| TTTATCATCAGCAGAAAATT+TGG | 0.182176 | 4_4:-23765824 | None:intergenic |
| CACGATTCATCACCATTATA+AGG | 0.258930 | 4_4:+23767192 | Msa0675220:three_prime_UTR |
| TGTAATTTGTTCTCTTGTAT+TGG | 0.277119 | 4_4:-23767501 | None:intergenic |
| AGCATCAGCAAAGGCGAAAA+AGG | 0.277394 | 4_4:+23766707 | Msa0675220:CDS |
| GGAGCTTCCGAGTGGATATA+TGG | 0.286921 | 4_4:+23766743 | Msa0675220:CDS |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.292912 | 4_4:-23766075 | None:intergenic |
| AGTTCGTGTACGTAGCTTAT+TGG | 0.293904 | 4_4:+23764123 | Msa0675220:CDS |
| CTTAATTCCGCAGCAGAACT+TGG | 0.309638 | 4_4:+23766476 | Msa0675220:CDS |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.328445 | 4_4:+23766075 | Msa0675220:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.337508 | 4_4:+23766417 | Msa0675220:CDS |
| CAAACCTGGATCTCCAGAAT+TGG | 0.341119 | 4_4:-23766088 | None:intergenic |
| CGCCTTTGCTGATGCTTTCG+AGG | 0.349983 | 4_4:-23766700 | None:intergenic |
| ATCTTGATCAAGTATAGTTT+TGG | 0.351285 | 4_4:-23767034 | None:intergenic |
| TACTTCTGTGATAGATGTTA+TGG | 0.351570 | 4_4:+23765891 | Msa0675220:CDS |
| CGCAGCAGAACTTGGGCTCT+TGG | 0.353607 | 4_4:+23766484 | Msa0675220:CDS |
| ACCTTTCGTGGAGTTCTGTT+TGG | 0.361798 | 4_4:-23763844 | None:intergenic |
| GTTTGGATCTTTCTTATCCA+TGG | 0.365988 | 4_4:-23763827 | None:intergenic |
| AGATCAATGGCATCAATATC+AGG | 0.368015 | 4_4:-23767135 | None:intergenic |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 4_4:+23766675 | Msa0675220:CDS |
| TCACTTTCACTGAGATCATT+TGG | 0.383113 | 4_4:+23765763 | Msa0675220:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.389526 | 4_4:-23766666 | None:intergenic |
| CCTGTGTGGCTTATGTGAAT+AGG | 0.404339 | 4_4:+23767229 | Msa0675220:three_prime_UTR |
| CAGCTGAAGTTTATTCCAAA+GGG | 0.406994 | 4_4:+23763951 | Msa0675220:intron |
| AATTTGTTCTCTTGTATTGG+AGG | 0.409168 | 4_4:-23767498 | None:intergenic |
| AAGAAAAGCTACAGTGTTGT+TGG | 0.412396 | 4_4:+23767078 | Msa0675220:CDS |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 4_4:+23766061 | Msa0675220:CDS |
| ACGATTCATCACCATTATAA+GGG | 0.419263 | 4_4:+23767193 | Msa0675220:three_prime_UTR |
| GGATAGTTTGAGTTTGTGTC+AGG | 0.427676 | 4_4:-23766042 | None:intergenic |
| AGTTTGTTTAGTACCTTTCG+TGG | 0.435246 | 4_4:-23763856 | None:intergenic |
| CTGTGTGGCTTATGTGAATA+GGG | 0.435899 | 4_4:+23767230 | Msa0675220:three_prime_UTR |
| AGTTTGTACTTCCAATCATC+AGG | 0.441189 | 4_4:-23767284 | None:intergenic |
| TCTGTACTGTCCCCTTATAA+TGG | 0.441505 | 4_4:-23767204 | None:intergenic |
| TAAAACTAGTATGACATTGT+TGG | 0.449476 | 4_4:+23767313 | Msa0675220:three_prime_UTR |
| AGCAACCAGTGAACAGTAAA+GGG | 0.453368 | 4_4:+23766661 | Msa0675220:CDS |
| GCCATTGATCTTGAATCCAT+TGG | 0.463045 | 4_4:+23767147 | Msa0675220:CDS |
| AAACCTGGATCTCCAGAATT+GGG | 0.469834 | 4_4:-23766087 | None:intergenic |
| ACTAGAGATATCCTGATGAT+TGG | 0.470710 | 4_4:+23767273 | Msa0675220:three_prime_UTR |
| AACACATTCTTCAACTGCTA+TGG | 0.470804 | 4_4:+23765855 | Msa0675220:CDS |
| AGATCATTTGGCAGTGGCAG+TGG | 0.473266 | 4_4:+23765775 | Msa0675220:CDS |
| AAGCCCAATTCTGGAGATCC+AGG | 0.473812 | 4_4:+23766084 | Msa0675220:CDS |
| AAATGCATCTCGCGCAGCAC+TGG | 0.480195 | 4_4:-23765728 | None:intergenic |
| GGGTGGAACTTACATCATAC+AGG | 0.486199 | 4_4:-23766818 | None:intergenic |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 4_4:-23766063 | None:intergenic |
| TCCAATGGATTCAAGATCAA+TGG | 0.494630 | 4_4:-23767148 | None:intergenic |
| AAGCTACAGTGTTGTTGGAA+AGG | 0.501929 | 4_4:+23767083 | Msa0675220:CDS |
| TTTGGCAGTGGCAGTGGTAA+TGG | 0.504694 | 4_4:+23765781 | Msa0675220:CDS |
| TGGATATATGGGCAAAATGC+AGG | 0.505913 | 4_4:+23766755 | Msa0675220:CDS |
| ATTTATGTGAATTGCTCTGT+AGG | 0.509118 | 4_4:+23767351 | Msa0675220:three_prime_UTR |
| TTTCTCATATAGGTATCTCC+AGG | 0.514422 | 4_4:+23767009 | Msa0675220:intron |
| AAGCAACCAGTGAACAGTAA+AGG | 0.517583 | 4_4:+23766660 | Msa0675220:CDS |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4_4:+23765347 | Msa0675220:intron |
| ACAGCTGAAGTTTATTCCAA+AGG | 0.529517 | 4_4:+23763950 | Msa0675220:intron |
| TTAATTCCGCAGCAGAACTT+GGG | 0.538505 | 4_4:+23766477 | Msa0675220:CDS |
| GAGCTTCCGAGTGGATATAT+GGG | 0.539303 | 4_4:+23766744 | Msa0675220:CDS |
| GACATTGTTGGAATATCAAG+TGG | 0.548114 | 4_4:+23767325 | Msa0675220:three_prime_UTR |
| TTCACTGGTTGCTTGACACA+AGG | 0.560755 | 4_4:-23766651 | None:intergenic |
| AGTGAAAGTGATGAATCTCT+AGG | 0.578456 | 4_4:-23765751 | None:intergenic |
| AAAGGTTACAGTTGACGCAA+AGG | 0.581529 | 4_4:+23767101 | Msa0675220:CDS |
| ACCAGTGAACAGTAAAGGGA+AGG | 0.581704 | 4_4:+23766665 | Msa0675220:CDS |
| CGTCTTCTTCAGCAAAGCCA+TGG | 0.585581 | 4_4:+23763810 | Msa0675220:exon |
| AATGAAATATTATCAGACAT+TGG | 0.586957 | 4_4:-23767412 | None:intergenic |
| TCACTGAGATCATTTGGCAG+TGG | 0.587322 | 4_4:+23765769 | Msa0675220:CDS |
| GCCACTGATGTGAAATATGA+TGG | 0.589781 | 4_4:+23766446 | Msa0675220:CDS |
| ATGAAGACTACACGGAACCA+TGG | 0.591028 | 4_4:+23765929 | Msa0675220:CDS |
| CACTGATGATGAAGACTACA+CGG | 0.591091 | 4_4:+23765921 | Msa0675220:CDS |
| CGTGTAGTCTTCATCATCAG+TGG | 0.592625 | 4_4:-23765920 | None:intergenic |
| TCTTGATAAGATAGAATTTG+GGG | 0.600434 | 4_4:+23766418 | Msa0675220:CDS |
| TTGACACAAGGCAGAACAGT+AGG | 0.608176 | 4_4:-23766639 | None:intergenic |
| ACCATCATATTTCACATCAG+TGG | 0.608501 | 4_4:-23766447 | None:intergenic |
| CGATTCATCACCATTATAAG+GGG | 0.621243 | 4_4:+23767194 | Msa0675220:three_prime_UTR |
| TGAAGACTACACGGAACCAT+GGG | 0.628361 | 4_4:+23765930 | Msa0675220:CDS |
| GATGATTGGAAGTACAAACT+AGG | 0.628515 | 4_4:+23767287 | Msa0675220:three_prime_UTR |
| TCCAAACAGAACTCCACGAA+AGG | 0.631732 | 4_4:+23763843 | Msa0675220:CDS |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 4_4:+23766421 | Msa0675220:CDS |
| CCTATTCACATAAGCCACAC+AGG | 0.638642 | 4_4:-23767229 | None:intergenic |
| CAAGAGCCCAAGTTCTGCTG+CGG | 0.648219 | 4_4:-23766483 | None:intergenic |
| AAAATGCAGGTGTATAAGAG+TGG | 0.654564 | 4_4:+23766768 | Msa0675220:CDS |
| TACCTCGAAAGCATCAGCAA+AGG | 0.671558 | 4_4:+23766698 | Msa0675220:CDS |
| GGTGGAACTTACATCATACA+GGG | 0.675680 | 4_4:-23766817 | None:intergenic |
| AACTTGCTGGAGCTTCCGAG+TGG | 0.683172 | 4_4:+23766735 | Msa0675220:CDS |
| AGCTTAAAGAAAATCAACTG+TGG | 0.715988 | 4_4:-23766615 | None:intergenic |
| AGTGGTAATGGTGAAAGCAG+TGG | 0.718273 | 4_4:+23765793 | Msa0675220:CDS |
| GGACAGTACAGATACCTGTG+TGG | 0.783220 | 4_4:+23767215 | Msa0675220:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTTTTGAAATAATAAT+CGG | + | chr4_4:23764028-23764047 | Msa0675220:intron | 10.0% |
| !!! | ATGTACAAATTATTTTATTA+TGG | + | chr4_4:23764382-23764401 | Msa0675220:intron | 10.0% |
| !!! | ATTTATTTTAGTTTTATTCT+TGG | + | chr4_4:23764463-23764482 | Msa0675220:intron | 10.0% |
| !!! | ATTTTTTATATGGTAAAAAT+TGG | + | chr4_4:23764501-23764520 | Msa0675220:intron | 10.0% |
| !! | TACTTAAAAAATTACTTAAA+AGG | - | chr4_4:23764694-23764713 | None:intergenic | 10.0% |
| !!! | TTAATATAATTTGTGTTTCT+TGG | + | chr4_4:23764417-23764436 | Msa0675220:intron | 15.0% |
| !!! | TAATATAATTTGTGTTTCTT+GGG | + | chr4_4:23764418-23764437 | Msa0675220:intron | 15.0% |
| !!! | TTAGGAGAATATTTTTTATA+TGG | + | chr4_4:23764491-23764510 | Msa0675220:intron | 15.0% |
| !! | AATTTGACATAAGAAATTTA+TGG | - | chr4_4:23764641-23764660 | None:intergenic | 15.0% |
| !!! | TACATTGTTTTTTTCAAATT+TGG | + | chr4_4:23764663-23764682 | Msa0675220:intron | 15.0% |
| !! | TAGAATATAATAACAAGATA+TGG | - | chr4_4:23765133-23765152 | None:intergenic | 15.0% |
| !! | CAATATATAGATAAAACAAA+TGG | - | chr4_4:23765336-23765355 | None:intergenic | 15.0% |
| !! | AACCAAATATTATATAGAAA+TGG | - | chr4_4:23766355-23766374 | None:intergenic | 15.0% |
| !!! | TTATGTGTTGATTTTTAATA+TGG | + | chr4_4:23766388-23766407 | Msa0675220:intron | 15.0% |
| !! | GAAAAGAGTTGAATAAAAAT+CGG | + | chr4_4:23764308-23764327 | Msa0675220:intron | 20.0% |
| !!! | GTTTTATTCTTGGTTAATTT+AGG | + | chr4_4:23764473-23764492 | Msa0675220:intron | 20.0% |
| !! | AAAGTGAAATCTTTATATCT+TGG | - | chr4_4:23764574-23764593 | None:intergenic | 20.0% |
| !!! | AGATATAAAGATTTCACTTT+TGG | + | chr4_4:23764574-23764593 | Msa0675220:intron | 20.0% |
| !!! | CAGGTAATTGAAATTTTTTA+AGG | + | chr4_4:23764606-23764625 | Msa0675220:intron | 20.0% |
| !!! | TTTGCTGTTGATTAAATTTT+CGG | - | chr4_4:23764752-23764771 | None:intergenic | 20.0% |
| !!! | AAATCGTGAATACATTTTTA+CGG | - | chr4_4:23764957-23764976 | None:intergenic | 20.0% |
| !! | TATAATACTATGATAGCATT+TGG | - | chr4_4:23765224-23765243 | None:intergenic | 20.0% |
| !! | TGCTAAAATATATCTAAAAG+TGG | + | chr4_4:23765253-23765272 | Msa0675220:intron | 20.0% |
| !!! | TTGTTTTATCTATATATTGC+AGG | + | chr4_4:23765337-23765356 | Msa0675220:intron | 20.0% |
| !! | TATTTCATAATTGTGATGTT+GGG | + | chr4_4:23765458-23765477 | Msa0675220:intron | 20.0% |
| !! | AAACTTCTTTGTAAAGAAAA+TGG | - | chr4_4:23765547-23765566 | None:intergenic | 20.0% |
| !!! | CAAAACAAATAAAGCTTTTA+AGG | + | chr4_4:23766116-23766135 | Msa0675220:intron | 20.0% |
| !! | AGCCATTTCTATATAATATT+TGG | + | chr4_4:23766350-23766369 | Msa0675220:intron | 20.0% |
| !! | ATTCTTGATAAGATAGAATT+TGG | + | chr4_4:23766416-23766435 | Msa0675220:CDS | 20.0% |
| !! | TTCTTGATAAGATAGAATTT+GGG | + | chr4_4:23766417-23766436 | Msa0675220:CDS | 20.0% |
| !!! | TACATAGAAAATTTTTCTTC+AGG | + | chr4_4:23766578-23766597 | Msa0675220:intron | 20.0% |
| !! | TGGTATAATAACCAAAATAT+GGG | - | chr4_4:23766947-23766966 | None:intergenic | 20.0% |
| !! | ATGGTATAATAACCAAAATA+TGG | - | chr4_4:23766948-23766967 | None:intergenic | 20.0% |
| !! | TCAACAATCAATGTTAAAAA+TGG | - | chr4_4:23766967-23766986 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGTTTCTCATAT+AGG | + | chr4_4:23766999-23767018 | Msa0675220:intron | 20.0% |
| !! | AATGAAATATTATCAGACAT+TGG | - | chr4_4:23767415-23767434 | None:intergenic | 20.0% |
| !! | TTTTCAGAGGAAGTAATTTT+GGG | - | chr4_4:23763888-23763907 | None:intergenic | 25.0% |
| !!! | ATTTTCGTTGTTTGAGATTT+GGG | - | chr4_4:23763981-23764000 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTACAGTGAAGC+TGG | + | chr4_4:23764073-23764092 | Msa0675220:intron | 25.0% |
| ! | TTGGTTAAAAATTAGCTAGT+CGG | - | chr4_4:23764555-23764574 | None:intergenic | 25.0% |
| ! | TTTAATCAACAGCAAAAACA+TGG | + | chr4_4:23764756-23764775 | Msa0675220:intron | 25.0% |
| ! | TAACTCGCTATAATAGATTT+AGG | + | chr4_4:23764924-23764943 | Msa0675220:intron | 25.0% |
| ! | AACTCGCTATAATAGATTTA+GGG | + | chr4_4:23764925-23764944 | Msa0675220:intron | 25.0% |
| !! | AATCGTGAATACATTTTTAC+GGG | - | chr4_4:23764956-23764975 | None:intergenic | 25.0% |
| !! | ATGTAGCTTCTAAAAAATCA+CGG | - | chr4_4:23765048-23765067 | None:intergenic | 25.0% |
| !!! | TTTTAGAAGCTACATTGTAT+AGG | + | chr4_4:23765053-23765072 | Msa0675220:intron | 25.0% |
| ! | ACACTGTACAAATATATTCA+GGG | - | chr4_4:23765090-23765109 | None:intergenic | 25.0% |
| !!! | TTACATTGTTTTGCAACTTT+AGG | - | chr4_4:23765383-23765402 | None:intergenic | 25.0% |
| !! | ATGTCTTTTGACATATAAAG+TGG | - | chr4_4:23765416-23765435 | None:intergenic | 25.0% |
| ! | CTATTTCATAATTGTGATGT+TGG | + | chr4_4:23765457-23765476 | Msa0675220:intron | 25.0% |
| !! | TAGCAAAAATCATTTTACCA+TGG | + | chr4_4:23765586-23765605 | Msa0675220:intron | 25.0% |
| !!! | GTCAAAGTAATTTTTTTCCA+TGG | - | chr4_4:23765606-23765625 | None:intergenic | 25.0% |
| ! | AGAATATCTTAGATTCTATG+TGG | + | chr4_4:23765633-23765652 | Msa0675220:intron | 25.0% |
| !!! | ATTCTAAAACACTTTCCTTT+TGG | + | chr4_4:23765689-23765708 | Msa0675220:intron | 25.0% |
| ! | TTTATCATCAGCAGAAAATT+TGG | - | chr4_4:23765827-23765846 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGATGATAAATA+TGG | + | chr4_4:23765829-23765848 | Msa0675220:CDS | 25.0% |
| !!! | TTTGTTTTGTTTATCAAACC+TGG | - | chr4_4:23766105-23766124 | None:intergenic | 25.0% |
| !!! | TGTTTCTAACACTTTTCTTA+AGG | + | chr4_4:23766313-23766332 | Msa0675220:intron | 25.0% |
| ! | TCTTGATAAGATAGAATTTG+GGG | + | chr4_4:23766418-23766437 | Msa0675220:CDS | 25.0% |
| ! | CAGTAAATATATGGTAAATG+GGG | - | chr4_4:23766841-23766860 | None:intergenic | 25.0% |
| ! | CCAGTAAATATATGGTAAAT+GGG | - | chr4_4:23766842-23766861 | None:intergenic | 25.0% |
| ! | TCCAGTAAATATATGGTAAA+TGG | - | chr4_4:23766843-23766862 | None:intergenic | 25.0% |
| ! | TACTTCATCCAGTAAATATA+TGG | - | chr4_4:23766850-23766869 | None:intergenic | 25.0% |
| ! | GAATCACAATTAAACTAACT+TGG | - | chr4_4:23766873-23766892 | None:intergenic | 25.0% |
| !!! | AAATATGGGATAGCTTTTTT+GGG | - | chr4_4:23766933-23766952 | None:intergenic | 25.0% |
| !!! | AAAATATGGGATAGCTTTTT+TGG | - | chr4_4:23766934-23766953 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATCCCATATTT+TGG | + | chr4_4:23766933-23766952 | Msa0675220:intron | 25.0% |
| !! | TTAACATTGATTGTTGAAGT+TGG | + | chr4_4:23766970-23766989 | Msa0675220:intron | 25.0% |
| !! | ATCTTGATCAAGTATAGTTT+TGG | - | chr4_4:23767037-23767056 | None:intergenic | 25.0% |
| ! | TAAAACTAGTATGACATTGT+TGG | + | chr4_4:23767313-23767332 | Msa0675220:three_prime_UTR | 25.0% |
| ! | TTCATTTGCTTCAATGTTTA+TGG | + | chr4_4:23767429-23767448 | Msa0675220:three_prime_UTR | 25.0% |
| !!! | TGTAATTTGTTCTCTTGTAT+TGG | - | chr4_4:23767504-23767523 | None:intergenic | 25.0% |
| ! | CTTTTCAGAGGAAGTAATTT+TGG | - | chr4_4:23763889-23763908 | None:intergenic | 30.0% |
| !!! | AAAAGAAAAGCACTTTTCAG+AGG | - | chr4_4:23763901-23763920 | None:intergenic | 30.0% |
| !! | CATTTTCGTTGTTTGAGATT+TGG | - | chr4_4:23763982-23764001 | None:intergenic | 30.0% |
| GAAAGATGCATTTATTCACA+TGG | + | chr4_4:23764787-23764806 | Msa0675220:intron | 30.0% | |
| ATTATCTCACTAACTTTCTC+AGG | + | chr4_4:23764837-23764856 | Msa0675220:intron | 30.0% | |
| ACTCGCTATAATAGATTTAG+GGG | + | chr4_4:23764926-23764945 | Msa0675220:intron | 30.0% | |
| TAAGAACTTCAAACTCATTG+TGG | - | chr4_4:23765023-23765042 | None:intergenic | 30.0% | |
| CACTGTACAAATATATTCAG+GGG | - | chr4_4:23765089-23765108 | None:intergenic | 30.0% | |
| CACACTGTACAAATATATTC+AGG | - | chr4_4:23765091-23765110 | None:intergenic | 30.0% | |
| ATACTATGATAGCATTTGGT+AGG | - | chr4_4:23765220-23765239 | None:intergenic | 30.0% | |
| TTATCTATATATTGCAGGAG+AGG | + | chr4_4:23765342-23765361 | Msa0675220:intron | 30.0% | |
| TATCTATATATTGCAGGAGA+GGG | + | chr4_4:23765343-23765362 | Msa0675220:intron | 30.0% | |
| ! | GGGAAGGAAAGATAATATTT+TGG | + | chr4_4:23765478-23765497 | Msa0675220:intron | 30.0% |
| TACTTCTGTGATAGATGTTA+TGG | + | chr4_4:23765891-23765910 | Msa0675220:CDS | 30.0% | |
| ! | TGAACCTTTGATTTAACTAC+AGG | + | chr4_4:23766017-23766036 | Msa0675220:intron | 30.0% |
| TTGCATGAAATTCATCCAAT+AGG | - | chr4_4:23766197-23766216 | None:intergenic | 30.0% | |
| CCGACATTCTCTATTATATT+CGG | - | chr4_4:23766277-23766296 | None:intergenic | 30.0% | |
| CCGAATATAATAGAGAATGT+CGG | + | chr4_4:23766274-23766293 | Msa0675220:intron | 30.0% | |
| AATCAACACATAACTGTTAG+TGG | - | chr4_4:23766381-23766400 | None:intergenic | 30.0% | |
| AGCTTAAAGAAAATCAACTG+TGG | - | chr4_4:23766618-23766637 | None:intergenic | 30.0% | |
| GGAGCAGTCAAATTAAAAAT+AGG | + | chr4_4:23766789-23766808 | Msa0675220:CDS | 30.0% | |
| TAAATATATGGTAAATGGGG+TGG | - | chr4_4:23766838-23766857 | None:intergenic | 30.0% | |
| CCCATTTACCATATATTTAC+TGG | + | chr4_4:23766839-23766858 | Msa0675220:intron | 30.0% | |
| ! | TTGAGTCTTTTATAGTCCAA+TGG | - | chr4_4:23767166-23767185 | None:intergenic | 30.0% |
| ACGATTCATCACCATTATAA+GGG | + | chr4_4:23767193-23767212 | Msa0675220:three_prime_UTR | 30.0% | |
| ATTTATGTGAATTGCTCTGT+AGG | + | chr4_4:23767351-23767370 | Msa0675220:three_prime_UTR | 30.0% | |
| ! | AATTTGTTCTCTTGTATTGG+AGG | - | chr4_4:23767501-23767520 | None:intergenic | 30.0% |
| GTTTGGATCTTTCTTATCCA+TGG | - | chr4_4:23763830-23763849 | None:intergenic | 35.0% | |
| ! | AGTTTGTTTAGTACCTTTCG+TGG | - | chr4_4:23763859-23763878 | None:intergenic | 35.0% |
| ACAGCTGAAGTTTATTCCAA+AGG | + | chr4_4:23763950-23763969 | Msa0675220:intron | 35.0% | |
| CAGCTGAAGTTTATTCCAAA+GGG | + | chr4_4:23763951-23763970 | Msa0675220:intron | 35.0% | |
| GGTAAAAATTGGATGTGTGT+TGG | + | chr4_4:23764512-23764531 | Msa0675220:intron | 35.0% | |
| !! | TCACTTTTGGATTTGTGAAC+AGG | + | chr4_4:23764587-23764606 | Msa0675220:intron | 35.0% |
| ATCAACAGCAAAAACATGGT+AGG | + | chr4_4:23764760-23764779 | Msa0675220:intron | 35.0% | |
| GATGCATTTATTCACATGGT+AGG | + | chr4_4:23764791-23764810 | Msa0675220:intron | 35.0% | |
| !! | ATTGTTTTGCAACTTTAGGC+TGG | - | chr4_4:23765379-23765398 | None:intergenic | 35.0% |
| TCATAATTGTGATGTTGGGA+AGG | + | chr4_4:23765462-23765481 | Msa0675220:intron | 35.0% | |
| !!! | TGCAAGTTTTGAACACCAAA+AGG | - | chr4_4:23765707-23765726 | None:intergenic | 35.0% |
| AGTGAAAGTGATGAATCTCT+AGG | - | chr4_4:23765754-23765773 | None:intergenic | 35.0% | |
| TCACTTTCACTGAGATCATT+TGG | + | chr4_4:23765763-23765782 | Msa0675220:CDS | 35.0% | |
| AACACATTCTTCAACTGCTA+TGG | + | chr4_4:23765855-23765874 | Msa0675220:CDS | 35.0% | |
| TGATAAGAATTTCTCACCCA+TGG | - | chr4_4:23765949-23765968 | None:intergenic | 35.0% | |
| CAAAGGTTCAGATGCTTATA+TGG | - | chr4_4:23766007-23766026 | None:intergenic | 35.0% | |
| GGATCCTGTAGTTAAATCAA+AGG | - | chr4_4:23766024-23766043 | None:intergenic | 35.0% | |
| TCCAATAGGTGATAGTTTGA+CGG | - | chr4_4:23766183-23766202 | None:intergenic | 35.0% | |
| TGATAAGATAGAATTTGGGG+AGG | + | chr4_4:23766421-23766440 | Msa0675220:CDS | 35.0% | |
| ACCATCATATTTCACATCAG+TGG | - | chr4_4:23766450-23766469 | None:intergenic | 35.0% | |
| TTCAGCTGCATAATGATAGT+AGG | - | chr4_4:23766543-23766562 | None:intergenic | 35.0% | |
| AGTAAAGGGAAGGAGAAAAT+TGG | + | chr4_4:23766675-23766694 | Msa0675220:CDS | 35.0% | |
| ! | ATTTTGCCCATATATCCACT+CGG | - | chr4_4:23766753-23766772 | None:intergenic | 35.0% |
| AAAATGCAGGTGTATAAGAG+TGG | + | chr4_4:23766768-23766787 | Msa0675220:CDS | 35.0% | |
| TTTCTCATATAGGTATCTCC+AGG | + | chr4_4:23767009-23767028 | Msa0675220:intron | 35.0% | |
| !!! | TCAAGTATAGTTTTGGTACC+TGG | - | chr4_4:23767030-23767049 | None:intergenic | 35.0% |
| AAGAAAAGCTACAGTGTTGT+TGG | + | chr4_4:23767078-23767097 | Msa0675220:CDS | 35.0% | |
| AGATCAATGGCATCAATATC+AGG | - | chr4_4:23767138-23767157 | None:intergenic | 35.0% | |
| ! | TCCAATGGATTCAAGATCAA+TGG | - | chr4_4:23767151-23767170 | None:intergenic | 35.0% |
| CACGATTCATCACCATTATA+AGG | + | chr4_4:23767192-23767211 | Msa0675220:three_prime_UTR | 35.0% | |
| CGATTCATCACCATTATAAG+GGG | + | chr4_4:23767194-23767213 | Msa0675220:three_prime_UTR | 35.0% | |
| ACTAGAGATATCCTGATGAT+TGG | + | chr4_4:23767273-23767292 | Msa0675220:three_prime_UTR | 35.0% | |
| AGTTTGTACTTCCAATCATC+AGG | - | chr4_4:23767287-23767306 | None:intergenic | 35.0% | |
| ! | GATGATTGGAAGTACAAACT+AGG | + | chr4_4:23767287-23767306 | Msa0675220:three_prime_UTR | 35.0% |
| GACATTGTTGGAATATCAAG+TGG | + | chr4_4:23767325-23767344 | Msa0675220:three_prime_UTR | 35.0% | |
| ! | TGGAGGTTAGAGATTTTCAA+AGG | - | chr4_4:23767484-23767503 | None:intergenic | 35.0% |
| !! | TGAGATTTGGGTTTTCCCTT+TGG | - | chr4_4:23763969-23763988 | None:intergenic | 40.0% |
| AGTTCGTGTACGTAGCTTAT+TGG | + | chr4_4:23764123-23764142 | Msa0675220:CDS | 40.0% | |
| TTCACATGGTAGGTTACAGT+AGG | + | chr4_4:23764801-23764820 | Msa0675220:intron | 40.0% | |
| ! | GGTAGGTTACAGTAGGTTTT+TGG | + | chr4_4:23764808-23764827 | Msa0675220:intron | 40.0% |
| ATGATAGCATTTGGTAGGAC+AGG | - | chr4_4:23765215-23765234 | None:intergenic | 40.0% | |
| TATATATTGCAGGAGAGGGT+TGG | + | chr4_4:23765347-23765366 | Msa0675220:intron | 40.0% | |
| TTTATCATTGTGACCAGAGC+AGG | - | chr4_4:23765659-23765678 | None:intergenic | 40.0% | |
| ! | CACTGATGATGAAGACTACA+CGG | + | chr4_4:23765921-23765940 | Msa0675220:CDS | 40.0% |
| TGGATGAGAAAGATGCAGAT+AGG | - | chr4_4:23765987-23766006 | None:intergenic | 40.0% | |
| ! | GGATAGTTTGAGTTTGTGTC+AGG | - | chr4_4:23766045-23766064 | None:intergenic | 40.0% |
| ATCCTACTACTCTTCCTCTA+AGG | + | chr4_4:23766061-23766080 | Msa0675220:CDS | 40.0% | |
| TTCCTTAGAGGAAGAGTAGT+AGG | - | chr4_4:23766066-23766085 | None:intergenic | 40.0% | |
| AAACCTGGATCTCCAGAATT+GGG | - | chr4_4:23766090-23766109 | None:intergenic | 40.0% | |
| TCCGTCAAACTATCACCTAT+TGG | + | chr4_4:23766179-23766198 | Msa0675220:intron | 40.0% | |
| GCCACTGATGTGAAATATGA+TGG | + | chr4_4:23766446-23766465 | Msa0675220:CDS | 40.0% | |
| TTAATTCCGCAGCAGAACTT+GGG | + | chr4_4:23766477-23766496 | Msa0675220:CDS | 40.0% | |
| AAGCAACCAGTGAACAGTAA+AGG | + | chr4_4:23766660-23766679 | Msa0675220:CDS | 40.0% | |
| AGCAACCAGTGAACAGTAAA+GGG | + | chr4_4:23766661-23766680 | Msa0675220:CDS | 40.0% | |
| TGGATATATGGGCAAAATGC+AGG | + | chr4_4:23766755-23766774 | Msa0675220:CDS | 40.0% | |
| GGTGGAACTTACATCATACA+GGG | - | chr4_4:23766820-23766839 | None:intergenic | 40.0% | |
| ! | AAGCTACAGTGTTGTTGGAA+AGG | + | chr4_4:23767083-23767102 | Msa0675220:CDS | 40.0% |
| AAAGGTTACAGTTGACGCAA+AGG | + | chr4_4:23767101-23767120 | Msa0675220:CDS | 40.0% | |
| GCCATTGATCTTGAATCCAT+TGG | + | chr4_4:23767147-23767166 | Msa0675220:CDS | 40.0% | |
| TCTGTACTGTCCCCTTATAA+TGG | - | chr4_4:23767207-23767226 | None:intergenic | 40.0% | |
| CTGTGTGGCTTATGTGAATA+GGG | + | chr4_4:23767230-23767249 | Msa0675220:three_prime_UTR | 40.0% | |
| TCCAAACAGAACTCCACGAA+AGG | + | chr4_4:23763843-23763862 | Msa0675220:CDS | 45.0% | |
| ACCTTTCGTGGAGTTCTGTT+TGG | - | chr4_4:23763847-23763866 | None:intergenic | 45.0% | |
| TCACTGAGATCATTTGGCAG+TGG | + | chr4_4:23765769-23765788 | Msa0675220:CDS | 45.0% | |
| !! | AGTGGTAATGGTGAAAGCAG+TGG | + | chr4_4:23765793-23765812 | Msa0675220:CDS | 45.0% |
| CGTGTAGTCTTCATCATCAG+TGG | - | chr4_4:23765923-23765942 | None:intergenic | 45.0% | |
| ATGAAGACTACACGGAACCA+TGG | + | chr4_4:23765929-23765948 | Msa0675220:CDS | 45.0% | |
| TGAAGACTACACGGAACCAT+GGG | + | chr4_4:23765930-23765949 | Msa0675220:CDS | 45.0% | |
| CAAACCTGGATCTCCAGAAT+TGG | - | chr4_4:23766091-23766110 | None:intergenic | 45.0% | |
| ATGGGTCCAACATAAAGTGG+CGG | - | chr4_4:23766223-23766242 | None:intergenic | 45.0% | |
| GGAATGGGTCCAACATAAAG+TGG | - | chr4_4:23766226-23766245 | None:intergenic | 45.0% | |
| TGTTGGACCCATTCCCAAAA+TGG | + | chr4_4:23766231-23766250 | Msa0675220:intron | 45.0% | |
| !! | CATGTATGTCCCGCCATTTT+GGG | - | chr4_4:23766247-23766266 | None:intergenic | 45.0% |
| ! | TCATGTATGTCCCGCCATTT+TGG | - | chr4_4:23766248-23766267 | None:intergenic | 45.0% |
| CTTAATTCCGCAGCAGAACT+TGG | + | chr4_4:23766476-23766495 | Msa0675220:CDS | 45.0% | |
| TTGACACAAGGCAGAACAGT+AGG | - | chr4_4:23766642-23766661 | None:intergenic | 45.0% | |
| ! | TTCACTGGTTGCTTGACACA+AGG | - | chr4_4:23766654-23766673 | None:intergenic | 45.0% |
| ACCAGTGAACAGTAAAGGGA+AGG | + | chr4_4:23766665-23766684 | Msa0675220:CDS | 45.0% | |
| TCCTTCCCTTTACTGTTCAC+TGG | - | chr4_4:23766669-23766688 | None:intergenic | 45.0% | |
| !! | TACCTCGAAAGCATCAGCAA+AGG | + | chr4_4:23766698-23766717 | Msa0675220:CDS | 45.0% |
| AGCATCAGCAAAGGCGAAAA+AGG | + | chr4_4:23766707-23766726 | Msa0675220:CDS | 45.0% | |
| ! | GAAAAAGGCGAGTAACTTGC+TGG | + | chr4_4:23766722-23766741 | Msa0675220:CDS | 45.0% |
| GAGCTTCCGAGTGGATATAT+GGG | + | chr4_4:23766744-23766763 | Msa0675220:CDS | 45.0% | |
| GGGTGGAACTTACATCATAC+AGG | - | chr4_4:23766821-23766840 | None:intergenic | 45.0% | |
| CCTATTCACATAAGCCACAC+AGG | - | chr4_4:23767232-23767251 | None:intergenic | 45.0% | |
| CCTGTGTGGCTTATGTGAAT+AGG | + | chr4_4:23767229-23767248 | Msa0675220:three_prime_UTR | 45.0% | |
| CGTCTTCTTCAGCAAAGCCA+TGG | + | chr4_4:23763810-23763829 | Msa0675220:exon | 50.0% | |
| AGATTCTATGTGGCCTGCTC+TGG | + | chr4_4:23765643-23765662 | Msa0675220:intron | 50.0% | |
| AGATCATTTGGCAGTGGCAG+TGG | + | chr4_4:23765775-23765794 | Msa0675220:CDS | 50.0% | |
| TTTGGCAGTGGCAGTGGTAA+TGG | + | chr4_4:23765781-23765800 | Msa0675220:CDS | 50.0% | |
| CCAGAATTGGGCTTCCTTAG+AGG | - | chr4_4:23766078-23766097 | None:intergenic | 50.0% | |
| ! | CCTCTAAGGAAGCCCAATTC+TGG | + | chr4_4:23766075-23766094 | Msa0675220:CDS | 50.0% |
| ! | AAGCCCAATTCTGGAGATCC+AGG | + | chr4_4:23766084-23766103 | Msa0675220:CDS | 50.0% |
| ! | CAAGTCCCGCCACTTTATGT+TGG | + | chr4_4:23766214-23766233 | Msa0675220:intron | 50.0% |
| TGGGTCCAACATAAAGTGGC+GGG | - | chr4_4:23766222-23766241 | None:intergenic | 50.0% | |
| TGGACCCATTCCCAAAATGG+CGG | + | chr4_4:23766234-23766253 | Msa0675220:intron | 50.0% | |
| !! | TGTCCCGCCATTTTGGGAAT+GGG | - | chr4_4:23766241-23766260 | None:intergenic | 50.0% |
| !! | ATGTCCCGCCATTTTGGGAA+TGG | - | chr4_4:23766242-23766261 | None:intergenic | 50.0% |
| GGAGCTTCCGAGTGGATATA+TGG | + | chr4_4:23766743-23766762 | Msa0675220:CDS | 50.0% | |
| GGACAGTACAGATACCTGTG+TGG | + | chr4_4:23767215-23767234 | Msa0675220:three_prime_UTR | 50.0% | |
| AAATGCATCTCGCGCAGCAC+TGG | - | chr4_4:23765731-23765750 | None:intergenic | 55.0% | |
| GGACCCATTCCCAAAATGGC+GGG | + | chr4_4:23766235-23766254 | Msa0675220:intron | 55.0% | |
| CAAGAGCCCAAGTTCTGCTG+CGG | - | chr4_4:23766486-23766505 | None:intergenic | 55.0% | |
| CGCCTTTGCTGATGCTTTCG+AGG | - | chr4_4:23766703-23766722 | None:intergenic | 55.0% | |
| !! | AACTTGCTGGAGCTTCCGAG+TGG | + | chr4_4:23766735-23766754 | Msa0675220:CDS | 55.0% |
| CGCAGCAGAACTTGGGCTCT+TGG | + | chr4_4:23766484-23766503 | Msa0675220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 23763752 | 23767523 | 23763752 | ID=Msa0675220;Name=Msa0675220 |
| chr4_4 | mRNA | 23763752 | 23767523 | 23763752 | ID=Msa0675220-mRNA-1;Parent=Msa0675220;Name=Msa0675220-mRNA-1;_AED=0.16;_eAED=0.16;_QI=77|1|1|1|1|1|9|347|315 |
| chr4_4 | exon | 23763752 | 23763864 | 23763752 | ID=Msa0675220-mRNA-1:exon:6603;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23763954 | 23764000 | 23763954 | ID=Msa0675220-mRNA-1:exon:6604;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23764087 | 23764144 | 23764087 | ID=Msa0675220-mRNA-1:exon:6605;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23765359 | 23765398 | 23765359 | ID=Msa0675220-mRNA-1:exon:6606;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23765728 | 23765951 | 23765728 | ID=Msa0675220-mRNA-1:exon:6607;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23766039 | 23766105 | 23766039 | ID=Msa0675220-mRNA-1:exon:6608;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23766414 | 23766505 | 23766414 | ID=Msa0675220-mRNA-1:exon:6609;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23766600 | 23766827 | 23766600 | ID=Msa0675220-mRNA-1:exon:6610;Parent=Msa0675220-mRNA-1 |
| chr4_4 | exon | 23767021 | 23767523 | 23767021 | ID=Msa0675220-mRNA-1:exon:6611;Parent=Msa0675220-mRNA-1 |
| chr4_4 | five_prime_UTR | 23763752 | 23763828 | 23763752 | ID=Msa0675220-mRNA-1:five_prime_utr;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23763829 | 23763864 | 23763829 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23763954 | 23764000 | 23763954 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23764087 | 23764144 | 23764087 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23765359 | 23765398 | 23765359 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23765728 | 23765951 | 23765728 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23766039 | 23766105 | 23766039 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23766414 | 23766505 | 23766414 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23766600 | 23766827 | 23766600 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | CDS | 23767021 | 23767176 | 23767021 | ID=Msa0675220-mRNA-1:cds;Parent=Msa0675220-mRNA-1 |
| chr4_4 | three_prime_UTR | 23767177 | 23767523 | 23767177 | ID=Msa0675220-mRNA-1:three_prime_utr;Parent=Msa0675220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
