Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067090 | sp|Q9M1K1|ORG2_ARATH | 41.365 | 249 | 135 | 5 | 1 | 240 | 1 | 247 | 3.00e-54 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067090 | A0A396JNS6 | 93.522 | 247 | 16 | 0 | 1 | 247 | 1 | 247 | 3.63e-166 | 468 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067090 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067090 | Msa0112640 | 0.827657 | 1.385772e-54 | -8.615850e-47 |
| Msa0067090 | Msa0670360 | 0.808279 | 3.348312e-50 | -8.615850e-47 |
| Msa0067090 | Msa0824860 | 0.800811 | 1.209474e-48 | -8.615850e-47 |
| Msa0067090 | Msa0863840 | 0.804788 | 1.826233e-49 | -8.615850e-47 |
| Msa0067090 | Msa0941120 | 0.800371 | 1.487140e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067090 | MtrunA17_Chr1g0170581 | 93.522 | 247 | 16 | 0 | 1 | 247 | 1 | 247 | 6.99e-170 | 468 |
| Msa0067090 | MtrunA17_Chr1g0170571 | 89.344 | 244 | 18 | 1 | 1 | 244 | 1 | 236 | 1.87e-149 | 416 |
| Msa0067090 | MtrunA17_Chr1g0170591 | 83.607 | 244 | 32 | 1 | 1 | 244 | 1 | 236 | 2.31e-148 | 413 |
| Msa0067090 | MtrunA17_Chr7g0256671 | 58.167 | 251 | 86 | 7 | 1 | 241 | 1 | 242 | 4.63e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067090 | AT3G56970.1 | 41.365 | 249 | 135 | 5 | 1 | 240 | 1 | 247 | 3.05e-55 | 178 |
| Msa0067090 | AT3G56980.1 | 39.560 | 273 | 115 | 6 | 1 | 242 | 1 | 254 | 5.94e-47 | 157 |
| Msa0067090 | AT2G41240.1 | 37.647 | 255 | 129 | 6 | 1 | 242 | 1 | 238 | 1.14e-44 | 150 |
| Msa0067090 | AT2G41240.2 | 37.255 | 255 | 129 | 7 | 1 | 242 | 1 | 237 | 3.68e-42 | 144 |
| Msa0067090 | AT5G04150.2 | 44.785 | 163 | 85 | 2 | 60 | 219 | 78 | 238 | 7.59e-36 | 127 |
| Msa0067090 | AT5G04150.1 | 43.169 | 183 | 96 | 4 | 60 | 237 | 78 | 257 | 1.45e-35 | 127 |
Find 41 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCTGGTTATGGCTTAT+TGG | 0.196697 | 1_2:+31698328 | None:intergenic |
| TCAACTTGTTTCTGTAATTC+TGG | 0.201065 | 1_2:+31697841 | None:intergenic |
| CTCTCTTCGTTCACTTCTTC+CGG | 0.225102 | 1_2:-31698128 | Msa0067090:CDS |
| TCTTCATCTCAGACCTTTGC+AGG | 0.241758 | 1_2:-31697577 | Msa0067090:CDS |
| TGTAACTATGCTTCTTCCTT+TGG | 0.251062 | 1_2:+31697740 | None:intergenic |
| CTTCTATAATTTGCATTTCC+AGG | 0.265122 | 1_2:-31697548 | Msa0067090:intron |
| GTAACTATGCTTCTTCCTTT+GGG | 0.307422 | 1_2:+31697741 | None:intergenic |
| TGAAAAGCTCTTATCAATAA+TGG | 0.319674 | 1_2:-31696954 | Msa0067090:CDS |
| AGGACTCTTGAAATTGTTGC+TGG | 0.367920 | 1_2:+31697874 | None:intergenic |
| ATGAATTCTGATGCTGGTTA+TGG | 0.378267 | 1_2:+31698320 | None:intergenic |
| ATGGCTTATTGGCTCTTCAA+AGG | 0.435523 | 1_2:+31698339 | None:intergenic |
| TCTTCCGGTTTCTGATCAAA+TGG | 0.463200 | 1_2:-31698113 | Msa0067090:intron |
| AGTACCATTTGATCAGAAAC+CGG | 0.465158 | 1_2:+31698109 | None:intergenic |
| TGAAGGACTAAGTAAGAGAA+AGG | 0.469978 | 1_2:-31697821 | Msa0067090:CDS |
| TGGCTTATTGGCTCTTCAAA+GGG | 0.488560 | 1_2:+31698340 | None:intergenic |
| CACATCAAGATCTCAGAAAG+TGG | 0.497267 | 1_2:+31697634 | None:intergenic |
| CATGCCAAGGTCACTGCTTG+TGG | 0.499479 | 1_2:+31698216 | None:intergenic |
| AGAATAACCTCTTCTTCTTG+AGG | 0.516991 | 1_2:+31697775 | None:intergenic |
| TGTAGAATGAATTCTGATGC+TGG | 0.526407 | 1_2:+31698314 | None:intergenic |
| ATCAATAATGGAGAAGGAAG+GGG | 0.526977 | 1_2:-31696942 | Msa0067090:CDS |
| ACAAATTATTGATCTTCTTG+CGG | 0.529574 | 1_2:+31698155 | None:intergenic |
| GCTCTTATCAATAATGGAGA+AGG | 0.545227 | 1_2:-31696948 | Msa0067090:CDS |
| CTTCATCTCAGACCTTTGCA+GGG | 0.548412 | 1_2:-31697576 | Msa0067090:CDS |
| AAGAAGCATAGTTACAACTC+TGG | 0.551749 | 1_2:-31697733 | Msa0067090:CDS |
| TATCAATAATGGAGAAGGAA+GGG | 0.552099 | 1_2:-31696943 | Msa0067090:CDS |
| ACTTTATCCTCAAGAAGAAG+AGG | 0.554683 | 1_2:-31697782 | Msa0067090:CDS |
| AGTGTAACATGAAATCTGAA+TGG | 0.555088 | 1_2:+31697669 | None:intergenic |
| GAATTACAGAAACAAGTTGA+AGG | 0.556198 | 1_2:-31697838 | Msa0067090:CDS |
| CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1_2:+31698364 | None:intergenic |
| TTATCAATAATGGAGAAGGA+AGG | 0.562276 | 1_2:-31696944 | Msa0067090:CDS |
| TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1_2:+31697644 | None:intergenic |
| CAATCCACAAGCAGTGACCT+TGG | 0.569748 | 1_2:-31698220 | Msa0067090:CDS |
| CGGAAGAAGTGAACGAAGAG+AGG | 0.572171 | 1_2:+31698129 | None:intergenic |
| TTGATGTGTTTAGAAAATGA+TGG | 0.577722 | 1_2:-31697619 | Msa0067090:CDS |
| ATAGAAGACTCTCCCTGCAA+AGG | 0.579465 | 1_2:+31697564 | None:intergenic |
| GTCACTGCTTGTGGATTGTG+AGG | 0.591686 | 1_2:+31698225 | None:intergenic |
| CCAATTGTTGAAAACATAGG+AGG | 0.599467 | 1_2:+31698367 | None:intergenic |
| CACAAGCAGTGACCTTGGCA+TGG | 0.602895 | 1_2:-31698215 | Msa0067090:CDS |
| TTCTAAGCAAAGAATCCCAA+AGG | 0.620328 | 1_2:-31697756 | Msa0067090:CDS |
| CAAGCTTCTTAACCATGCCA+AGG | 0.655760 | 1_2:+31698203 | None:intergenic |
| TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1_2:+31698226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAATATAAGAAATTA+TGG | - | chr1_2:31698146-31698165 | Msa0067090:CDS | 10.0% |
| !! | ACTAAAAATATAAGAAATTA+TGG | - | chr1_2:31698146-31698165 | Msa0067090:CDS | 10.0% |
| !! | GATCATATATAATTATGATT+TGG | - | chr1_2:31697928-31697947 | Msa0067090:intron | 15.0% |
| !! | ATACAAAATAATTGATTACT+TGG | - | chr1_2:31698182-31698201 | Msa0067090:CDS | 15.0% |
| !! | TACAAAATAATTGATTACTT+GGG | - | chr1_2:31698183-31698202 | Msa0067090:CDS | 15.0% |
| !! | GATCATATATAATTATGATT+TGG | - | chr1_2:31697928-31697947 | Msa0067090:intron | 15.0% |
| !! | ATACAAAATAATTGATTACT+TGG | - | chr1_2:31698182-31698201 | Msa0067090:CDS | 15.0% |
| !! | TACAAAATAATTGATTACTT+GGG | - | chr1_2:31698183-31698202 | Msa0067090:CDS | 15.0% |
| !! | ATATTTCGTCAATTATGAAT+TGG | - | chr1_2:31697816-31697835 | Msa0067090:CDS | 20.0% |
| !! | TTAATAACATGTAAGAAGTA+AGG | - | chr1_2:31698122-31698141 | Msa0067090:CDS | 20.0% |
| !! | ATATTTCGTCAATTATGAAT+TGG | - | chr1_2:31697816-31697835 | Msa0067090:CDS | 20.0% |
| !! | TTAATAACATGTAAGAAGTA+AGG | - | chr1_2:31698122-31698141 | Msa0067090:CDS | 20.0% |
| !!! | TAATTTTCATGATCAAGTTG+AGG | - | chr1_2:31697038-31697057 | Msa0067090:intron | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | + | chr1_2:31697155-31697174 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | + | chr1_2:31697232-31697251 | None:intergenic | 25.0% |
| !! | GTAATTCTGGTATGTATTTT+AGG | + | chr1_2:31697456-31697475 | None:intergenic | 25.0% |
| ! | TTGATGTGTTTAGAAAATGA+TGG | - | chr1_2:31697688-31697707 | Msa0067090:CDS | 25.0% |
| !!! | ACACAAAGAGCTTTTAATTA+AGG | + | chr1_2:31698286-31698305 | None:intergenic | 25.0% |
| ! | TGAAAAGCTCTTATCAATAA+TGG | - | chr1_2:31698353-31698372 | Msa0067090:CDS | 25.0% |
| !!! | TAATTTTCATGATCAAGTTG+AGG | - | chr1_2:31697038-31697057 | Msa0067090:intron | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | + | chr1_2:31697155-31697174 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | + | chr1_2:31697232-31697251 | None:intergenic | 25.0% |
| !! | GTAATTCTGGTATGTATTTT+AGG | + | chr1_2:31697456-31697475 | None:intergenic | 25.0% |
| ! | TTGATGTGTTTAGAAAATGA+TGG | - | chr1_2:31697688-31697707 | Msa0067090:CDS | 25.0% |
| !!! | ACACAAAGAGCTTTTAATTA+AGG | + | chr1_2:31698286-31698305 | None:intergenic | 25.0% |
| ! | TGAAAAGCTCTTATCAATAA+TGG | - | chr1_2:31698353-31698372 | Msa0067090:CDS | 25.0% |
| CATCCAATTGTTGAAAACAT+AGG | + | chr1_2:31696946-31696965 | None:intergenic | 30.0% | |
| ! | CTATGTTTTCAACAATTGGA+TGG | - | chr1_2:31696944-31696963 | Msa0067090:CDS | 30.0% |
| GACAATTAGAAACAGAAAGA+AGG | + | chr1_2:31697233-31697252 | None:intergenic | 30.0% | |
| !!! | TCTAATTGTGATGTCGTTTT+TGG | - | chr1_2:31697334-31697353 | Msa0067090:intron | 30.0% |
| !! | TCAACTTGTTTCTGTAATTC+TGG | + | chr1_2:31697469-31697488 | None:intergenic | 30.0% |
| ! | GAATTACAGAAACAAGTTGA+AGG | - | chr1_2:31697469-31697488 | Msa0067090:intron | 30.0% |
| !! | GTTTTGTAGTTTCAAGTAGT+AGG | - | chr1_2:31697596-31697615 | Msa0067090:CDS | 30.0% |
| AGTGTAACATGAAATCTGAA+TGG | + | chr1_2:31697641-31697660 | None:intergenic | 30.0% | |
| ! | CTTCTATAATTTGCATTTCC+AGG | - | chr1_2:31697759-31697778 | Msa0067090:CDS | 30.0% |
| AAGATGTAGAGTCATATAAG+AGG | - | chr1_2:31698245-31698264 | Msa0067090:CDS | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | - | chr1_2:31698363-31698382 | Msa0067090:CDS | 30.0% |
| ! | TATCAATAATGGAGAAGGAA+GGG | - | chr1_2:31698364-31698383 | Msa0067090:CDS | 30.0% |
| CATCCAATTGTTGAAAACAT+AGG | + | chr1_2:31696946-31696965 | None:intergenic | 30.0% | |
| ! | CTATGTTTTCAACAATTGGA+TGG | - | chr1_2:31696944-31696963 | Msa0067090:CDS | 30.0% |
| GACAATTAGAAACAGAAAGA+AGG | + | chr1_2:31697233-31697252 | None:intergenic | 30.0% | |
| !!! | TCTAATTGTGATGTCGTTTT+TGG | - | chr1_2:31697334-31697353 | Msa0067090:intron | 30.0% |
| !! | TCAACTTGTTTCTGTAATTC+TGG | + | chr1_2:31697469-31697488 | None:intergenic | 30.0% |
| ! | GAATTACAGAAACAAGTTGA+AGG | - | chr1_2:31697469-31697488 | Msa0067090:intron | 30.0% |
| !! | GTTTTGTAGTTTCAAGTAGT+AGG | - | chr1_2:31697596-31697615 | Msa0067090:CDS | 30.0% |
| AGTGTAACATGAAATCTGAA+TGG | + | chr1_2:31697641-31697660 | None:intergenic | 30.0% | |
| ! | CTTCTATAATTTGCATTTCC+AGG | - | chr1_2:31697759-31697778 | Msa0067090:CDS | 30.0% |
| AAGATGTAGAGTCATATAAG+AGG | - | chr1_2:31698245-31698264 | Msa0067090:CDS | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | - | chr1_2:31698363-31698382 | Msa0067090:CDS | 30.0% |
| ! | TATCAATAATGGAGAAGGAA+GGG | - | chr1_2:31698364-31698383 | Msa0067090:CDS | 30.0% |
| CCAATTGTTGAAAACATAGG+AGG | + | chr1_2:31696943-31696962 | None:intergenic | 35.0% | |
| ! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1_2:31696940-31696959 | Msa0067090:CDS | 35.0% |
| ! | ATGAATTCTGATGCTGGTTA+TGG | + | chr1_2:31696990-31697009 | None:intergenic | 35.0% |
| TGTAGAATGAATTCTGATGC+TGG | + | chr1_2:31696996-31697015 | None:intergenic | 35.0% | |
| AGTACCATTTGATCAGAAAC+CGG | + | chr1_2:31697201-31697220 | None:intergenic | 35.0% | |
| ! | CTTGAAAACCTTGTGTTTTG+AGG | - | chr1_2:31697295-31697314 | Msa0067090:intron | 35.0% |
| TGAAGGACTAAGTAAGAGAA+AGG | - | chr1_2:31697486-31697505 | Msa0067090:intron | 35.0% | |
| ACTTTATCCTCAAGAAGAAG+AGG | - | chr1_2:31697525-31697544 | Msa0067090:intron | 35.0% | |
| AGAATAACCTCTTCTTCTTG+AGG | + | chr1_2:31697535-31697554 | None:intergenic | 35.0% | |
| TTCTAAGCAAAGAATCCCAA+AGG | - | chr1_2:31697551-31697570 | Msa0067090:CDS | 35.0% | |
| GTAACTATGCTTCTTCCTTT+GGG | + | chr1_2:31697569-31697588 | None:intergenic | 35.0% | |
| TGTAACTATGCTTCTTCCTT+TGG | + | chr1_2:31697570-31697589 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAGTTACAACTC+TGG | - | chr1_2:31697574-31697593 | Msa0067090:CDS | 35.0% |
| CATAGTGAAATTAACACACC+TGG | + | chr1_2:31697780-31697799 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | - | chr1_2:31698359-31698378 | Msa0067090:CDS | 35.0% |
| ! | ATCAATAATGGAGAAGGAAG+GGG | - | chr1_2:31698365-31698384 | Msa0067090:CDS | 35.0% |
| CCAATTGTTGAAAACATAGG+AGG | + | chr1_2:31696943-31696962 | None:intergenic | 35.0% | |
| ! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1_2:31696940-31696959 | Msa0067090:CDS | 35.0% |
| ! | ATGAATTCTGATGCTGGTTA+TGG | + | chr1_2:31696990-31697009 | None:intergenic | 35.0% |
| TGTAGAATGAATTCTGATGC+TGG | + | chr1_2:31696996-31697015 | None:intergenic | 35.0% | |
| AGTACCATTTGATCAGAAAC+CGG | + | chr1_2:31697201-31697220 | None:intergenic | 35.0% | |
| ! | CTTGAAAACCTTGTGTTTTG+AGG | - | chr1_2:31697295-31697314 | Msa0067090:intron | 35.0% |
| TGAAGGACTAAGTAAGAGAA+AGG | - | chr1_2:31697486-31697505 | Msa0067090:intron | 35.0% | |
| ACTTTATCCTCAAGAAGAAG+AGG | - | chr1_2:31697525-31697544 | Msa0067090:intron | 35.0% | |
| AGAATAACCTCTTCTTCTTG+AGG | + | chr1_2:31697535-31697554 | None:intergenic | 35.0% | |
| TTCTAAGCAAAGAATCCCAA+AGG | - | chr1_2:31697551-31697570 | Msa0067090:CDS | 35.0% | |
| GTAACTATGCTTCTTCCTTT+GGG | + | chr1_2:31697569-31697588 | None:intergenic | 35.0% | |
| TGTAACTATGCTTCTTCCTT+TGG | + | chr1_2:31697570-31697589 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAGTTACAACTC+TGG | - | chr1_2:31697574-31697593 | Msa0067090:CDS | 35.0% |
| CATAGTGAAATTAACACACC+TGG | + | chr1_2:31697780-31697799 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | - | chr1_2:31698359-31698378 | Msa0067090:CDS | 35.0% |
| ! | ATCAATAATGGAGAAGGAAG+GGG | - | chr1_2:31698365-31698384 | Msa0067090:CDS | 35.0% |
| !! | TGGCTTATTGGCTCTTCAAA+GGG | + | chr1_2:31696970-31696989 | None:intergenic | 40.0% |
| !! | ATGGCTTATTGGCTCTTCAA+AGG | + | chr1_2:31696971-31696990 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGCTTAT+TGG | + | chr1_2:31696982-31697001 | None:intergenic | 40.0% |
| TCTTCCGGTTTCTGATCAAA+TGG | - | chr1_2:31697194-31697213 | Msa0067090:intron | 40.0% | |
| !!! | ACCTTGTGTTTTGAGGAGTA+TGG | - | chr1_2:31697302-31697321 | Msa0067090:intron | 40.0% |
| ACCATACTCCTCAAAACACA+AGG | + | chr1_2:31697306-31697325 | None:intergenic | 40.0% | |
| AGGACTCTTGAAATTGTTGC+TGG | + | chr1_2:31697436-31697455 | None:intergenic | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | + | chr1_2:31697666-31697685 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGAAAG+TGG | + | chr1_2:31697676-31697695 | None:intergenic | 40.0% | |
| AAGCTCTTTGTGTTTACTGC+AGG | - | chr1_2:31698293-31698312 | Msa0067090:CDS | 40.0% | |
| !! | TGGCTTATTGGCTCTTCAAA+GGG | + | chr1_2:31696970-31696989 | None:intergenic | 40.0% |
| !! | ATGGCTTATTGGCTCTTCAA+AGG | + | chr1_2:31696971-31696990 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGCTTAT+TGG | + | chr1_2:31696982-31697001 | None:intergenic | 40.0% |
| TCTTCCGGTTTCTGATCAAA+TGG | - | chr1_2:31697194-31697213 | Msa0067090:intron | 40.0% | |
| !!! | ACCTTGTGTTTTGAGGAGTA+TGG | - | chr1_2:31697302-31697321 | Msa0067090:intron | 40.0% |
| ACCATACTCCTCAAAACACA+AGG | + | chr1_2:31697306-31697325 | None:intergenic | 40.0% | |
| AGGACTCTTGAAATTGTTGC+TGG | + | chr1_2:31697436-31697455 | None:intergenic | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | + | chr1_2:31697666-31697685 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGAAAG+TGG | + | chr1_2:31697676-31697695 | None:intergenic | 40.0% | |
| AAGCTCTTTGTGTTTACTGC+AGG | - | chr1_2:31698293-31698312 | Msa0067090:CDS | 40.0% | |
| ! | TCACTGCTTGTGGATTGTGA+GGG | + | chr1_2:31697084-31697103 | None:intergenic | 45.0% |
| CAAGCTTCTTAACCATGCCA+AGG | + | chr1_2:31697107-31697126 | None:intergenic | 45.0% | |
| CTCTCTTCGTTCACTTCTTC+CGG | - | chr1_2:31697179-31697198 | Msa0067090:intron | 45.0% | |
| TCTTCATCTCAGACCTTTGC+AGG | - | chr1_2:31697730-31697749 | Msa0067090:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGCA+GGG | - | chr1_2:31697731-31697750 | Msa0067090:CDS | 45.0% | |
| ATAGAAGACTCTCCCTGCAA+AGG | + | chr1_2:31697746-31697765 | None:intergenic | 45.0% | |
| CTCTTTGTGTTTACTGCAGG+TGG | - | chr1_2:31698296-31698315 | Msa0067090:CDS | 45.0% | |
| ! | TCACTGCTTGTGGATTGTGA+GGG | + | chr1_2:31697084-31697103 | None:intergenic | 45.0% |
| CAAGCTTCTTAACCATGCCA+AGG | + | chr1_2:31697107-31697126 | None:intergenic | 45.0% | |
| CTCTCTTCGTTCACTTCTTC+CGG | - | chr1_2:31697179-31697198 | Msa0067090:intron | 45.0% | |
| TCTTCATCTCAGACCTTTGC+AGG | - | chr1_2:31697730-31697749 | Msa0067090:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGCA+GGG | - | chr1_2:31697731-31697750 | Msa0067090:CDS | 45.0% | |
| ATAGAAGACTCTCCCTGCAA+AGG | + | chr1_2:31697746-31697765 | None:intergenic | 45.0% | |
| CTCTTTGTGTTTACTGCAGG+TGG | - | chr1_2:31698296-31698315 | Msa0067090:CDS | 45.0% | |
| ! | GTCACTGCTTGTGGATTGTG+AGG | + | chr1_2:31697085-31697104 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | - | chr1_2:31697087-31697106 | Msa0067090:intron | 50.0% | |
| CGGAAGAAGTGAACGAAGAG+AGG | + | chr1_2:31697181-31697200 | None:intergenic | 50.0% | |
| ! | GTCACTGCTTGTGGATTGTG+AGG | + | chr1_2:31697085-31697104 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | - | chr1_2:31697087-31697106 | Msa0067090:intron | 50.0% | |
| CGGAAGAAGTGAACGAAGAG+AGG | + | chr1_2:31697181-31697200 | None:intergenic | 50.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | + | chr1_2:31697094-31697113 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | - | chr1_2:31697092-31697111 | Msa0067090:intron | 55.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | + | chr1_2:31697094-31697113 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | - | chr1_2:31697092-31697111 | Msa0067090:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31696925 | 31698404 | 31696925 | ID=Msa0067090;Name=Msa0067090 |
| chr1_2 | mRNA | 31696925 | 31698404 | 31696925 | ID=Msa0067090-mRNA-1;Parent=Msa0067090;Name=Msa0067090-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_2 | exon | 31698114 | 31698404 | 31698114 | ID=Msa0067090-mRNA-1:exon:10453;Parent=Msa0067090-mRNA-1 |
| chr1_2 | exon | 31697549 | 31697911 | 31697549 | ID=Msa0067090-mRNA-1:exon:10452;Parent=Msa0067090-mRNA-1 |
| chr1_2 | exon | 31696925 | 31697014 | 31696925 | ID=Msa0067090-mRNA-1:exon:10451;Parent=Msa0067090-mRNA-1 |
| chr1_2 | CDS | 31698114 | 31698404 | 31698114 | ID=Msa0067090-mRNA-1:cds;Parent=Msa0067090-mRNA-1 |
| chr1_2 | CDS | 31697549 | 31697911 | 31697549 | ID=Msa0067090-mRNA-1:cds;Parent=Msa0067090-mRNA-1 |
| chr1_2 | CDS | 31696925 | 31697014 | 31696925 | ID=Msa0067090-mRNA-1:cds;Parent=Msa0067090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
