AlfalfaGEDB | Msa0112640

M. sativa cultivar zhongmu-4 / Msa0112640

KEGG: K18486
GO: GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112640	XP_013467291.2	92.713	247	18	0	1	247	1	247	9.69e-164	462

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112640	sp\|Q9M1K1\|ORG2_ARATH	41.365	249	135	5	1	240	1	247	1.90e-54	178

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112640	A0A396JNS6	92.713	247	18	0	1	247	1	247	4.63e-164	462

TFs/TRs:

Gene ID	Type	Classification
Msa0112640	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018690	Msa0112640	0.833364	5.563605e-56	-8.615850e-47
Msa0048950	Msa0112640	0.800267	1.561489e-48	-8.615850e-47
Msa0059880	Msa0112640	0.834184	3.470406e-56	-8.615850e-47
Msa0067090	Msa0112640	0.827657	1.385772e-54	-8.615850e-47
Msa0112640	Msa0150910	0.800863	1.180214e-48	-8.615850e-47
Msa0112640	Msa0219210	0.801508	8.710706e-49	-8.615850e-47
Msa0112640	Msa0274250	0.806004	1.015300e-49	-8.615850e-47
Msa0112640	Msa0298270	0.833653	4.713606e-56	-8.615850e-47
Msa0112640	Msa0343720	0.811818	5.788183e-51	-8.615850e-47
Msa0112640	Msa0469550	0.804220	2.398830e-49	-8.615850e-47
Msa0112640	Msa0491770	0.813837	2.091388e-51	-8.615850e-47
Msa0112640	Msa0515260	0.803511	3.367003e-49	-8.615850e-47
Msa0112640	Msa0624050	0.802678	5.004930e-49	-8.615850e-47
Msa0112640	Msa0643840	0.812716	3.686111e-51	-8.615850e-47
Msa0112640	Msa0670360	0.825212	5.302019e-54	-8.615850e-47
Msa0112640	Msa0727480	0.817084	3.960371e-52	-8.615850e-47
Msa0112640	Msa0768720	0.803917	2.772991e-49	-8.615850e-47
Msa0112640	Msa0863840	0.811155	8.062664e-51	-8.615850e-47
Msa0112640	Msa0883640	0.828596	8.233569e-55	-8.615850e-47
Msa0112640	Msa0902340	0.812480	4.150538e-51	-8.615850e-47
Msa0112640	Msa0910830	0.833263	5.897478e-56	-8.615850e-47
Msa0112640	Msa0960090	0.828187	1.033342e-54	-8.615850e-47
Msa0112640	Msa0985700	0.828476	8.800678e-55	-8.615850e-47
Msa0112640	Msa1021620	0.807135	5.860036e-50	-8.615850e-47
Msa0112640	Msa1026050	0.811929	5.475279e-51	-8.615850e-47
Msa0112640	Msa1061670	0.800373	1.486123e-48	-8.615850e-47
Msa0112640	Msa1076830	0.819967	8.792348e-53	-8.615850e-47
Msa0112640	Msa1109890	0.837033	6.598310e-57	-8.615850e-47
Msa0112640	Msa1286420	0.808246	3.403669e-50	-8.615850e-47
Msa0112640	Msa1373560	0.809520	1.816633e-50	-8.615850e-47
Msa0112640	Msa1376070	0.810003	1.430739e-50	-8.615850e-47
Msa0112640	Msa1377520	0.805009	1.641519e-49	-8.615850e-47
Msa0112640	Msa1378400	0.819688	1.018346e-52	-8.615850e-47
Msa0112640	Msa1459610	0.800808	1.211399e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112640	MtrunA17_Chr1g0170581	92.713	247	18	0	1	247	1	247	8.91e-168	462
Msa0112640	MtrunA17_Chr1g0170571	88.525	244	20	1	1	244	1	236	3.69e-147	410
Msa0112640	MtrunA17_Chr1g0170591	83.197	244	33	1	1	244	1	236	1.25e-146	409
Msa0112640	MtrunA17_Chr7g0256671	56.972	251	89	7	1	241	1	242	9.58e-65	202

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112640	AT3G56970.1	41.365	249	135	5	1	240	1	247	1.93e-55	178
Msa0112640	AT3G56980.1	39.194	273	116	6	1	242	1	254	1.82e-46	155
Msa0112640	AT2G41240.1	38.000	250	135	5	1	242	1	238	3.96e-45	151
Msa0112640	AT2G41240.2	37.600	250	135	6	1	242	1	237	1.57e-42	145
Msa0112640	AT5G04150.2	45.161	155	83	1	65	219	86	238	1.88e-35	126
Msa0112640	AT5G04150.1	43.429	175	94	3	65	237	86	257	2.17e-35	127

Find 35 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAACTTGTTTCTGTAATTC+TGG	0.201065	1_3:-27768714	None:intergenic
TCTTCATCTCAGACCTTTGC+AGG	0.241758	1_3:+27768978	Msa0112640:CDS
TGTAACTATGCTTCTTCCTT+TGG	0.251062	1_3:-27768815	None:intergenic
CTTCTATAATTTGCATTTCC+AGG	0.265122	1_3:+27769007	Msa0112640:CDS
GTAACTATGCTTCTTCCTTT+GGG	0.307422	1_3:-27768814	None:intergenic
AGGACTCTTGAAATTGTTGC+TGG	0.367920	1_3:-27768681	None:intergenic
GATCGCGTTCACTAGCATTA+TGG	0.375108	1_3:-27768370	None:intergenic
TCTTCCTGTTTCTGATCAAA+TGG	0.413993	1_3:+27768436	Msa0112640:CDS
AGTACCATTTGATCAGAAAC+AGG	0.414053	1_3:-27768440	None:intergenic
ATGAATTCTGATGATGGTTA+TGG	0.420513	1_3:-27768229	None:intergenic
AACAATTGGATGGCCCTTTG+AGG	0.464251	1_3:+27768196	Msa0112640:CDS
TGAAGGACTAAGTAAGAGAA+AGG	0.469978	1_3:+27768734	Msa0112640:CDS
CACATCAAGATCTCAGAAAG+TGG	0.497267	1_3:-27768921	None:intergenic
AGAATAACCTCTTCTTCTTG+AGG	0.516991	1_3:-27768780	None:intergenic
TGTAGAATGAATTCTGATGA+TGG	0.522101	1_3:-27768235	None:intergenic
CATGCTAAGGTCACTGCTTG+TGG	0.529098	1_3:-27768333	None:intergenic
ACAAATTATTGATCTTCTTG+CGG	0.529574	1_3:-27768394	None:intergenic
CTTCATCTCAGACCTTTGCA+GGG	0.548412	1_3:+27768979	Msa0112640:CDS
AAGAAGCATAGTTACAACTC+TGG	0.551749	1_3:+27768822	Msa0112640:CDS
ACTTTATCCTCAAGAAGAAG+AGG	0.554683	1_3:+27768773	Msa0112640:CDS
AGTGTAACATGAAATCTGAA+TGG	0.555088	1_3:-27768886	None:intergenic
GAATTACAGAAACAAGTTGA+AGG	0.556198	1_3:+27768717	Msa0112640:CDS
CATCCAATTGTTGAAAACAT+AGG	0.558093	1_3:-27768185	None:intergenic
TCTCAGAAAGTGGAATCTTG+TGG	0.569417	1_3:-27768911	None:intergenic
GCTCTTATCAATAATCGAGA+AGG	0.576892	1_3:+27769579	Msa0112640:CDS
TTGATGTGTTTAGAAAATGA+TGG	0.577722	1_3:+27768936	Msa0112640:CDS
ATAGAAGACTCTCCCTGCAA+AGG	0.579465	1_3:-27768991	None:intergenic
CCAATTGTTGAAAACATAGG+AGG	0.582074	1_3:-27768182	None:intergenic
GTCACTGCTTGTGGATTGTG+AGG	0.596424	1_3:-27768324	None:intergenic
AGGAAGAAGTGAACGAAGTG+AGG	0.599839	1_3:-27768420	None:intergenic
CAAGCTTCTTGACCATGCTA+AGG	0.604223	1_3:-27768346	None:intergenic
CACAAGCAGTGACCTTAGCA+TGG	0.613188	1_3:+27768334	Msa0112640:CDS
TTCTAAGCAAAGAATCCCAA+AGG	0.620328	1_3:+27768799	Msa0112640:CDS
TTATCAATAATCGAGAAGGA+AGG	0.636620	1_3:+27769583	Msa0112640:CDS
TCACTGCTTGTGGATTGTGA+GGG	0.698792	1_3:-27768323	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTCACAAATGTTAAATT+TGG	+	chr1_3:27769256-27769275	Msa0112640:intron	15.0%
!!	TATACAAATAATTGATTACT+TGG	+	chr1_3:27769400-27769419	Msa0112640:intron	15.0%
!!	ATACAAATAATTGATTACTT+GGG	+	chr1_3:27769401-27769420	Msa0112640:intron	15.0%
!!!	ATTTTCACAAATGTTAAATT+TGG	+	chr1_3:27769256-27769275	Msa0112640:intron	15.0%
!!	TATACAAATAATTGATTACT+TGG	+	chr1_3:27769400-27769419	Msa0112640:intron	15.0%
!!	ATACAAATAATTGATTACTT+GGG	+	chr1_3:27769401-27769420	Msa0112640:intron	15.0%
!!	GATCATACATAATTATGATT+TGG	+	chr1_3:27769177-27769196	Msa0112640:intron	20.0%
!!	TTAAAAACATGTAAGAAGTA+AGG	+	chr1_3:27769339-27769358	Msa0112640:intron	20.0%
!!!	ACACAAAAAGCTTTTAATTA+AGG	-	chr1_3:27769506-27769525	None:intergenic	20.0%
!!	GATCATACATAATTATGATT+TGG	+	chr1_3:27769177-27769196	Msa0112640:intron	20.0%
!!	TTAAAAACATGTAAGAAGTA+AGG	+	chr1_3:27769339-27769358	Msa0112640:intron	20.0%
!!!	ACACAAAAAGCTTTTAATTA+AGG	-	chr1_3:27769506-27769525	None:intergenic	20.0%
!!!	TAATTTTCATGATCAAGTTG+AGG	+	chr1_3:27768280-27768299	Msa0112640:CDS	25.0%
!	ACAAATTATTGATCTTCTTG+CGG	-	chr1_3:27768397-27768416	None:intergenic	25.0%
!	ACAATTAGAAACAGAAAGAA+GGG	-	chr1_3:27768474-27768493	None:intergenic	25.0%
!	TCTAATTGTCAATAATGCTT+TGG	+	chr1_3:27768485-27768504	Msa0112640:intron	25.0%
!!	GTAATTCTGGTATGTATTTT+AGG	-	chr1_3:27768704-27768723	None:intergenic	25.0%
!	TTGATGTGTTTAGAAAATGA+TGG	+	chr1_3:27768936-27768955	Msa0112640:CDS	25.0%
!!!	TAATTTTCATGATCAAGTTG+AGG	+	chr1_3:27768280-27768299	Msa0112640:CDS	25.0%
!	ACAAATTATTGATCTTCTTG+CGG	-	chr1_3:27768397-27768416	None:intergenic	25.0%
!	ACAATTAGAAACAGAAAGAA+GGG	-	chr1_3:27768474-27768493	None:intergenic	25.0%
!	TCTAATTGTCAATAATGCTT+TGG	+	chr1_3:27768485-27768504	Msa0112640:intron	25.0%
!!	GTAATTCTGGTATGTATTTT+AGG	-	chr1_3:27768704-27768723	None:intergenic	25.0%
!	TTGATGTGTTTAGAAAATGA+TGG	+	chr1_3:27768936-27768955	Msa0112640:CDS	25.0%
	CATCCAATTGTTGAAAACAT+AGG	-	chr1_3:27768188-27768207	None:intergenic	30.0%
!	CTATGTTTTCAACAATTGGA+TGG	+	chr1_3:27768186-27768205	Msa0112640:CDS	30.0%
!!	ATGAATTCTGATGATGGTTA+TGG	-	chr1_3:27768232-27768251	None:intergenic	30.0%
	TGTAGAATGAATTCTGATGA+TGG	-	chr1_3:27768238-27768257	None:intergenic	30.0%
	GACAATTAGAAACAGAAAGA+AGG	-	chr1_3:27768475-27768494	None:intergenic	30.0%
!!!	TCTAATTGTGATGTCGTTTT+TGG	+	chr1_3:27768582-27768601	Msa0112640:intron	30.0%
!!	TCAACTTGTTTCTGTAATTC+TGG	-	chr1_3:27768717-27768736	None:intergenic	30.0%
!	GAATTACAGAAACAAGTTGA+AGG	+	chr1_3:27768717-27768736	Msa0112640:CDS	30.0%
!!	GTTTTGTAGTTTCAAGTAGT+AGG	+	chr1_3:27768844-27768863	Msa0112640:CDS	30.0%
	AGTGTAACATGAAATCTGAA+TGG	-	chr1_3:27768889-27768908	None:intergenic	30.0%
!	CTTCTATAATTTGCATTTCC+AGG	+	chr1_3:27769007-27769026	Msa0112640:CDS	30.0%
	GATGTATAGACTCATAAAAG+AGG	+	chr1_3:27769465-27769484	Msa0112640:intron	30.0%
	TTATCAATAATCGAGAAGGA+AGG	+	chr1_3:27769583-27769602	Msa0112640:CDS	30.0%
	CATCCAATTGTTGAAAACAT+AGG	-	chr1_3:27768188-27768207	None:intergenic	30.0%
!	CTATGTTTTCAACAATTGGA+TGG	+	chr1_3:27768186-27768205	Msa0112640:CDS	30.0%
!!	ATGAATTCTGATGATGGTTA+TGG	-	chr1_3:27768232-27768251	None:intergenic	30.0%
	TGTAGAATGAATTCTGATGA+TGG	-	chr1_3:27768238-27768257	None:intergenic	30.0%
	GACAATTAGAAACAGAAAGA+AGG	-	chr1_3:27768475-27768494	None:intergenic	30.0%
!!!	TCTAATTGTGATGTCGTTTT+TGG	+	chr1_3:27768582-27768601	Msa0112640:intron	30.0%
!!	TCAACTTGTTTCTGTAATTC+TGG	-	chr1_3:27768717-27768736	None:intergenic	30.0%
!	GAATTACAGAAACAAGTTGA+AGG	+	chr1_3:27768717-27768736	Msa0112640:CDS	30.0%
!!	GTTTTGTAGTTTCAAGTAGT+AGG	+	chr1_3:27768844-27768863	Msa0112640:CDS	30.0%
	AGTGTAACATGAAATCTGAA+TGG	-	chr1_3:27768889-27768908	None:intergenic	30.0%
!	CTTCTATAATTTGCATTTCC+AGG	+	chr1_3:27769007-27769026	Msa0112640:CDS	30.0%
	GATGTATAGACTCATAAAAG+AGG	+	chr1_3:27769465-27769484	Msa0112640:intron	30.0%
	TTATCAATAATCGAGAAGGA+AGG	+	chr1_3:27769583-27769602	Msa0112640:CDS	30.0%
	CCAATTGTTGAAAACATAGG+AGG	-	chr1_3:27768185-27768204	None:intergenic	35.0%
!	CCTCCTATGTTTTCAACAAT+TGG	+	chr1_3:27768182-27768201	Msa0112640:CDS	35.0%
!!!	TGATGATGGTTATGGCTTTT+TGG	-	chr1_3:27768224-27768243	None:intergenic	35.0%
!!	TCTTCCTGTTTCTGATCAAA+TGG	+	chr1_3:27768436-27768455	Msa0112640:CDS	35.0%
	AGTACCATTTGATCAGAAAC+AGG	-	chr1_3:27768443-27768462	None:intergenic	35.0%
!	CTTGAAAACCTTGTGTTTTG+AGG	+	chr1_3:27768543-27768562	Msa0112640:intron	35.0%
	TGAAGGACTAAGTAAGAGAA+AGG	+	chr1_3:27768734-27768753	Msa0112640:CDS	35.0%
	ACTTTATCCTCAAGAAGAAG+AGG	+	chr1_3:27768773-27768792	Msa0112640:CDS	35.0%
	AGAATAACCTCTTCTTCTTG+AGG	-	chr1_3:27768783-27768802	None:intergenic	35.0%
	TTCTAAGCAAAGAATCCCAA+AGG	+	chr1_3:27768799-27768818	Msa0112640:CDS	35.0%
	GTAACTATGCTTCTTCCTTT+GGG	-	chr1_3:27768817-27768836	None:intergenic	35.0%
	TGTAACTATGCTTCTTCCTT+TGG	-	chr1_3:27768818-27768837	None:intergenic	35.0%
!	AAGAAGCATAGTTACAACTC+TGG	+	chr1_3:27768822-27768841	Msa0112640:CDS	35.0%
!	AAGCTTTTTGTGTTTACTGC+AGG	+	chr1_3:27769513-27769532	Msa0112640:intron	35.0%
	GCTCTTATCAATAATCGAGA+AGG	+	chr1_3:27769579-27769598	Msa0112640:CDS	35.0%
	CCAATTGTTGAAAACATAGG+AGG	-	chr1_3:27768185-27768204	None:intergenic	35.0%
!	CCTCCTATGTTTTCAACAAT+TGG	+	chr1_3:27768182-27768201	Msa0112640:CDS	35.0%
!!!	TGATGATGGTTATGGCTTTT+TGG	-	chr1_3:27768224-27768243	None:intergenic	35.0%
!!	TCTTCCTGTTTCTGATCAAA+TGG	+	chr1_3:27768436-27768455	Msa0112640:CDS	35.0%
	AGTACCATTTGATCAGAAAC+AGG	-	chr1_3:27768443-27768462	None:intergenic	35.0%
!	CTTGAAAACCTTGTGTTTTG+AGG	+	chr1_3:27768543-27768562	Msa0112640:intron	35.0%
	TGAAGGACTAAGTAAGAGAA+AGG	+	chr1_3:27768734-27768753	Msa0112640:CDS	35.0%
	ACTTTATCCTCAAGAAGAAG+AGG	+	chr1_3:27768773-27768792	Msa0112640:CDS	35.0%
	AGAATAACCTCTTCTTCTTG+AGG	-	chr1_3:27768783-27768802	None:intergenic	35.0%
	TTCTAAGCAAAGAATCCCAA+AGG	+	chr1_3:27768799-27768818	Msa0112640:CDS	35.0%
	GTAACTATGCTTCTTCCTTT+GGG	-	chr1_3:27768817-27768836	None:intergenic	35.0%
	TGTAACTATGCTTCTTCCTT+TGG	-	chr1_3:27768818-27768837	None:intergenic	35.0%
!	AAGAAGCATAGTTACAACTC+TGG	+	chr1_3:27768822-27768841	Msa0112640:CDS	35.0%
!	AAGCTTTTTGTGTTTACTGC+AGG	+	chr1_3:27769513-27769532	Msa0112640:intron	35.0%
	GCTCTTATCAATAATCGAGA+AGG	+	chr1_3:27769579-27769598	Msa0112640:CDS	35.0%
!!!	ACCTTGTGTTTTGAGGAGTA+TGG	+	chr1_3:27768550-27768569	Msa0112640:intron	40.0%
	ACCATACTCCTCAAAACACA+AGG	-	chr1_3:27768554-27768573	None:intergenic	40.0%
	AGGACTCTTGAAATTGTTGC+TGG	-	chr1_3:27768684-27768703	None:intergenic	40.0%
	TCTCAGAAAGTGGAATCTTG+TGG	-	chr1_3:27768914-27768933	None:intergenic	40.0%
	CACATCAAGATCTCAGAAAG+TGG	-	chr1_3:27768924-27768943	None:intergenic	40.0%
	CCTAGTGAAATTAACACACC+TGG	-	chr1_3:27769028-27769047	None:intergenic	40.0%
	CCAGGTGTGTTAATTTCACT+AGG	+	chr1_3:27769025-27769044	Msa0112640:intron	40.0%
!	CTTTTTGTGTTTACTGCAGG+TGG	+	chr1_3:27769516-27769535	Msa0112640:intron	40.0%
!!!	ACCTTGTGTTTTGAGGAGTA+TGG	+	chr1_3:27768550-27768569	Msa0112640:intron	40.0%
	ACCATACTCCTCAAAACACA+AGG	-	chr1_3:27768554-27768573	None:intergenic	40.0%
	AGGACTCTTGAAATTGTTGC+TGG	-	chr1_3:27768684-27768703	None:intergenic	40.0%
	TCTCAGAAAGTGGAATCTTG+TGG	-	chr1_3:27768914-27768933	None:intergenic	40.0%
	CACATCAAGATCTCAGAAAG+TGG	-	chr1_3:27768924-27768943	None:intergenic	40.0%
	CCTAGTGAAATTAACACACC+TGG	-	chr1_3:27769028-27769047	None:intergenic	40.0%
	CCAGGTGTGTTAATTTCACT+AGG	+	chr1_3:27769025-27769044	Msa0112640:intron	40.0%
!	CTTTTTGTGTTTACTGCAGG+TGG	+	chr1_3:27769516-27769535	Msa0112640:intron	40.0%
	AACAATTGGATGGCCCTTTG+AGG	+	chr1_3:27768196-27768215	Msa0112640:CDS	45.0%
!!!	TGGCTTTTTGGCTCCTCAAA+GGG	-	chr1_3:27768212-27768231	None:intergenic	45.0%
!!!	ATGGCTTTTTGGCTCCTCAA+AGG	-	chr1_3:27768213-27768232	None:intergenic	45.0%
!	TCACTGCTTGTGGATTGTGA+GGG	-	chr1_3:27768326-27768345	None:intergenic	45.0%
	CAAGCTTCTTGACCATGCTA+AGG	-	chr1_3:27768349-27768368	None:intergenic	45.0%
	GATCGCGTTCACTAGCATTA+TGG	-	chr1_3:27768373-27768392	None:intergenic	45.0%
	AGGAAGAAGTGAACGAAGTG+AGG	-	chr1_3:27768423-27768442	None:intergenic	45.0%
	TCTTCATCTCAGACCTTTGC+AGG	+	chr1_3:27768978-27768997	Msa0112640:CDS	45.0%
	CTTCATCTCAGACCTTTGCA+GGG	+	chr1_3:27768979-27768998	Msa0112640:CDS	45.0%
	ATAGAAGACTCTCCCTGCAA+AGG	-	chr1_3:27768994-27769013	None:intergenic	45.0%
	AACAATTGGATGGCCCTTTG+AGG	+	chr1_3:27768196-27768215	Msa0112640:CDS	45.0%
!!!	TGGCTTTTTGGCTCCTCAAA+GGG	-	chr1_3:27768212-27768231	None:intergenic	45.0%
!!!	ATGGCTTTTTGGCTCCTCAA+AGG	-	chr1_3:27768213-27768232	None:intergenic	45.0%
!	TCACTGCTTGTGGATTGTGA+GGG	-	chr1_3:27768326-27768345	None:intergenic	45.0%
	CAAGCTTCTTGACCATGCTA+AGG	-	chr1_3:27768349-27768368	None:intergenic	45.0%
	GATCGCGTTCACTAGCATTA+TGG	-	chr1_3:27768373-27768392	None:intergenic	45.0%
	AGGAAGAAGTGAACGAAGTG+AGG	-	chr1_3:27768423-27768442	None:intergenic	45.0%
	TCTTCATCTCAGACCTTTGC+AGG	+	chr1_3:27768978-27768997	Msa0112640:CDS	45.0%
	CTTCATCTCAGACCTTTGCA+GGG	+	chr1_3:27768979-27768998	Msa0112640:CDS	45.0%
	ATAGAAGACTCTCCCTGCAA+AGG	-	chr1_3:27768994-27769013	None:intergenic	45.0%
!	GTCACTGCTTGTGGATTGTG+AGG	-	chr1_3:27768327-27768346	None:intergenic	50.0%
	CATGCTAAGGTCACTGCTTG+TGG	-	chr1_3:27768336-27768355	None:intergenic	50.0%
	CACAAGCAGTGACCTTAGCA+TGG	+	chr1_3:27768334-27768353	Msa0112640:CDS	50.0%
!	GTCACTGCTTGTGGATTGTG+AGG	-	chr1_3:27768327-27768346	None:intergenic	50.0%
	CATGCTAAGGTCACTGCTTG+TGG	-	chr1_3:27768336-27768355	None:intergenic	50.0%
	CACAAGCAGTGACCTTAGCA+TGG	+	chr1_3:27768334-27768353	Msa0112640:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	27768167	27769624	27768167	ID=Msa0112640;Name=Msa0112640
chr1_3	mRNA	27768167	27769624	27768167	ID=Msa0112640-mRNA-1;Parent=Msa0112640;Name=Msa0112640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|3\|0\|247
chr1_3	exon	27768167	27768457	27768167	ID=Msa0112640-mRNA-1:exon:9203;Parent=Msa0112640-mRNA-1
chr1_3	exon	27768666	27769028	27768666	ID=Msa0112640-mRNA-1:exon:9204;Parent=Msa0112640-mRNA-1
chr1_3	exon	27769535	27769624	27769535	ID=Msa0112640-mRNA-1:exon:9205;Parent=Msa0112640-mRNA-1
chr1_3	CDS	27768167	27768457	27768167	ID=Msa0112640-mRNA-1:cds;Parent=Msa0112640-mRNA-1
chr1_3	CDS	27768666	27769028	27768666	ID=Msa0112640-mRNA-1:cds;Parent=Msa0112640-mRNA-1
chr1_3	CDS	27769535	27769624	27769535	ID=Msa0112640-mRNA-1:cds;Parent=Msa0112640-mRNA-1

Gene Sequence

>Msa0112640

ATGTTAGCGATATCTCCTCCTATGTTTTCAACAATTGGATGGCCCTTTGAGGAGCCAAAAAGCCATAACCATCATCAGAATTCATTCTACAAAGACACTGTTGATCAATTATTTAATTTTCATGATCAAGTTGAGGCAGAAATTAATTCAACAGATCCCTCACAATCCACAAGCAGTGACCTTAGCATGGTCAAGAAGCTTGTCCATAATGCTAGTGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCCTCACTTCGTTCACTTCTTCCTGTTTCTGATCAAATGAAGAAATTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAATACATACCAGAATTACAGAAACAAGTTGAAGGACTAAGTAAGAGAAAGGATGAGATCTTATTGAGACTTTATCCTCAAGAAGAAGAGGTTATTCTAAGCAAAGAATCCCAAAGGAAGAAGCATAGTTACAACTCTGGTTTTGTAGTTTCAAGTAGTAGGCTCAATGATAGTGAAATTACCATTCAGATTTCATGTTACACTGTCCACAAGATTCCACTTTCTGAGATCTTGATGTGTTTAGAAAATGATGGTTTTTTGCTTCTTAATCTTTCTTCATCTCAGACCTTTGCAGGGAGAGTCTTCTATAATTTGCATTTCCAGGTGGATAAAGCACAGAGATTAGAATCTCATATTCTAAATGAGAAGCTCTTATCAATAATCGAGAAGGAAGGAGAGTTTTTAAAACAATAA

Protein sequence

>Msa0112640

MLAISPPMFSTIGWPFEEPKSHNHHQNSFYKDTVDQLFNFHDQVEAEINSTDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLSKRKDEILLRLYPQEEEVILSKESQRKKHSYNSGFVVSSSRLNDSEITIQISCYTVHKIPLSEILMCLENDGFLLLNLSSSQTFAGRVFYNLHFQVDKAQRLESHILNEKLLSIIEKEGEFLKQ*