AlfalfaGEDB | Msa0067600

M. sativa cultivar zhongmu-4 / Msa0067600

KEGG: K17506
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067600	XP_003590246.1	85.174	688	19	3	1	639	1	654	0.0	1179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067600	sp\|Q5JJY4\|P2C04_ORYSJ	56.491	701	198	8	2	639	1	657	0.0	791

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067600	G7I7C7	85.174	688	19	3	1	639	1	654	0.0	1179

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0067600	Msa1030950	0.801289	9.658502e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067600	MtrunA17_Chr1g0171571	85.174	688	19	3	1	639	1	654	0.0	1179
Msa0067600	MtrunA17_Chr1g0150451	36.187	257	121	7	403	627	76	321	2.51e-37	142
Msa0067600	MtrunA17_Chr3g0136711	35.338	266	128	8	403	635	33	287	9.74e-36	136
Msa0067600	MtrunA17_Chr4g0065141	27.566	341	169	9	357	627	16	348	6.04e-32	127
Msa0067600	MtrunA17_Chr3g0117731	29.193	322	136	8	37	334	63	316	4.50e-31	124
Msa0067600	MtrunA17_Chr3g0136131	28.902	346	134	9	25	329	81	355	1.79e-30	123
Msa0067600	MtrunA17_Chr1g0212961	32.308	260	131	6	403	631	94	339	1.72e-29	120
Msa0067600	MtrunA17_Chr4g0059121	29.779	272	120	7	61	330	111	313	2.30e-28	117
Msa0067600	MtrunA17_Chr3g0138281	30.325	277	139	8	397	627	75	343	2.94e-28	117
Msa0067600	MtrunA17_Chr3g0126511	33.852	257	127	7	403	627	93	338	1.04e-27	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067600	AT2G40860.1	56.585	691	210	6	4	639	3	658	0.0	780
Msa0067600	AT2G40860.2	55.240	668	209	6	4	616	3	635	0.0	737
Msa0067600	AT2G40860.3	55.466	622	219	5	4	602	3	589	0.0	696
Msa0067600	AT2G40860.4	55.966	595	189	5	83	639	1	560	0.0	663
Msa0067600	AT4G31750.1	35.409	257	123	7	403	627	32	277	2.31e-35	136
Msa0067600	AT4G31750.3	35.409	257	123	7	403	627	32	277	2.31e-35	136
Msa0067600	AT4G31750.2	35.409	257	123	7	403	627	32	277	2.63e-35	135
Msa0067600	AT5G24940.1	35.000	260	125	7	403	629	32	280	4.47e-35	138
Msa0067600	AT5G10740.1	35.019	257	124	6	403	627	32	277	7.36e-34	133
Msa0067600	AT5G10740.2	35.019	257	124	6	403	627	32	277	7.36e-34	133

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Find 153 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGAGTAAGAGGA+AGG	0.486088	1_2:-32604338	None:intergenic
AAACCAAAATCTGTGAGGTG+TGG	0.620524	1_2:-32607751	None:intergenic
AACCAGGATGCCAATCCTTC+TGG	0.374377	1_2:-32611291	None:intergenic
AACTCCTCGCTGGCAAGGAC+CGG	0.474157	1_2:-32609785	None:intergenic
AAGAGGAAGGAGGGAGATGA+AGG	0.350063	1_2:-32604325	None:intergenic
AAGCGCGTCATTGACGGTTG+GGG	0.536439	1_2:-32606646	None:intergenic
AAGCTATTTGTTGCTAATAG+TGG	0.407321	1_2:+32611346	Msa0067600:CDS
AAGGACACAGTTAAAGAGGC+AGG	0.551195	1_2:+32612952	Msa0067600:CDS
AAGGACCGGTCGTAATCCAT+CGG	0.638911	1_2:-32609771	None:intergenic
AAGTCAGATGTATACAGTTT+TGG	0.291480	1_2:+32607922	Msa0067600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATTGAGAAGAAGAAGAA+TGG	+	chr1_2:32604238-32604257	Msa0067600:exon	30.0%
AAAAAAATTGAAGTGACCTC+TGG	-	chr1_2:32604372-32604391	None:intergenic	30.0%
TGTTGAGAAAGAGACAAAAT+GGG	-	chr1_2:32604531-32604550	None:intergenic	30.0%
GCCTCATATAAGTGTTATAT+AGG	-	chr1_2:32605224-32605243	None:intergenic	30.0%
TGAGAAATGTTGATCAAAGA+GGG	+	chr1_2:32605319-32605338	Msa0067600:intron	30.0%
ACCGCTAATGTAATTAACAT+AGG	-	chr1_2:32605544-32605563	None:intergenic	30.0%
CAATAGAATGTTAGACGAAA+AGG	-	chr1_2:32605993-32606012	None:intergenic	30.0%
ATTCTATTGTGTGGTCTAAT+TGG	+	chr1_2:32606004-32606023	Msa0067600:intron	30.0%
CCCGAAAGATAAAATCATTA+TGG	-	chr1_2:32606035-32606054	None:intergenic	30.0%
AACATGTGAGTTGTCTTTAT+TGG	+	chr1_2:32606192-32606211	Msa0067600:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	32604086	32613289	32604086	ID=Msa0067600;Name=Msa0067600
chr1_2	mRNA	32604086	32613289	32604086	ID=Msa0067600-mRNA-1;Parent=Msa0067600;Name=Msa0067600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=171\|0.66\|0.76\|0.92\|0.66\|0.69\|13\|167\|639
chr1_2	exon	32604086	32604374	32604086	ID=Msa0067600-mRNA-1:exon:10736;Parent=Msa0067600-mRNA-1
chr1_2	exon	32604469	32604535	32604469	ID=Msa0067600-mRNA-1:exon:10737;Parent=Msa0067600-mRNA-1
chr1_2	exon	32606521	32606687	32606521	ID=Msa0067600-mRNA-1:exon:10738;Parent=Msa0067600-mRNA-1
chr1_2	exon	32607552	32607619	32607552	ID=Msa0067600-mRNA-1:exon:10739;Parent=Msa0067600-mRNA-1
chr1_2	exon	32607733	32607956	32607733	ID=Msa0067600-mRNA-1:exon:10740;Parent=Msa0067600-mRNA-1
chr1_2	exon	32608983	32609060	32608983	ID=Msa0067600-mRNA-1:exon:10741;Parent=Msa0067600-mRNA-1
chr1_2	exon	32609360	32609435	32609360	ID=Msa0067600-mRNA-1:exon:10742;Parent=Msa0067600-mRNA-1
chr1_2	exon	32609713	32610244	32609713	ID=Msa0067600-mRNA-1:exon:10743;Parent=Msa0067600-mRNA-1
chr1_2	exon	32611038	32611107	32611038	ID=Msa0067600-mRNA-1:exon:10744;Parent=Msa0067600-mRNA-1
chr1_2	exon	32611201	32611420	32611201	ID=Msa0067600-mRNA-1:exon:10745;Parent=Msa0067600-mRNA-1
chr1_2	exon	32611530	32611634	32611530	ID=Msa0067600-mRNA-1:exon:10746;Parent=Msa0067600-mRNA-1
chr1_2	exon	32612892	32613209	32612892	ID=Msa0067600-mRNA-1:exon:10747;Parent=Msa0067600-mRNA-1
chr1_2	exon	32613246	32613289	32613246	ID=Msa0067600-mRNA-1:exon:10748;Parent=Msa0067600-mRNA-1
chr1_2	five_prime_UTR	32604086	32604256	32604086	ID=Msa0067600-mRNA-1:five_prime_utr;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32604257	32604374	32604257	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32604469	32604535	32604469	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32606521	32606687	32606521	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32607552	32607619	32607552	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32607733	32607956	32607733	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32608983	32609060	32608983	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32609360	32609435	32609360	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32609713	32610244	32609713	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32611038	32611107	32611038	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32611201	32611420	32611201	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32611530	32611634	32611530	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	CDS	32612892	32613086	32612892	ID=Msa0067600-mRNA-1:cds;Parent=Msa0067600-mRNA-1
chr1_2	three_prime_UTR	32613087	32613209	32613087	ID=Msa0067600-mRNA-1:three_prime_utr;Parent=Msa0067600-mRNA-1
chr1_2	three_prime_UTR	32613246	32613289	32613246	ID=Msa0067600-mRNA-1:three_prime_utr;Parent=Msa0067600-mRNA-1

Gene Sequence

>Msa0067600

ATGGTAGGAATAGAGATTGTTGAACCTAACACTTGCATTAGGGGTTGCTGCACAAGCTCCTCTATTCCCCTTCATCTCCCTCCTTCCTCTTACTCTCTTCTTTTTCCTATTGCCAGAGGTGCTGAAAGTGTTGTTTATGAAGGCACTTTGAATGGAGACAAAGTTGCTGTTAAGAAACCCATTTTCAAGCTAGATCACCCGGGAATAGCAACACTAATTGCCGCCCATGCAAAACCACCCAATTATATGTTTTTCTTCAAGTTATATGAGTCTTCCAATCTCGGCCACAAGTTACATGTAGAAGAATGGGCCCCAACCGTCAATGACGCGCTTATGATAACAATGCAGTTAGCAAAGGCCTTGCAATATCTGCATAACCTCGGGATTCTGCATAGAGATGTGAAACCTGCAAATATTCTTCTTGACATAAATCTCTGTCCACACCTCACAGATTTTGGTTTGGCTGAATACAAGAGTGATATTAAGGGAGTTTCTCTTGAGAATTGGAAGTCTTCTGGAAAACCTACTGGTGGTTTTCACAAAAAGAATATGGTTGGAACACTTGTTTATATGGCACCTGAAATATTAAGAAAGGAATTACACTCAGAAAAGTCAGATGTATACAGTTTTGGGATATCAATCAATGAACTCCTTACTGGTGTTGTGCCATATACTGATCTTCGTGCAGAAGCACAGGCAAGTCTATCTTTTTTGTGTGTAGGAATCAAAGGGAAGCTCATTGAACTACCACTTGAACTTGAGAAGTATAGGTTGGCTGATTGTGAAGTGTGGAAGCTGGCTCACACGGTACTTGAGATGAACTATACTGAGCAACAACTAACAGCAGCTGTTGTTTCCGATGGATTACGACCGGTCCTTGCCAGCGAGGAGTTGGGTATACCATCAAGATTAGTATCGATGATACGAAAGTGCTGGGATGCTAATCCTAAAAGTAGACCTTCCTTTGATGAGATTGTCAAGGAACTTGATTTTATTATGGAACACAGGAAAGTAAAGAAGGTGGAAGATATGCATATTAGACCTTGTAACTTGCCTGTTGACCAACTTGTGGACAAGACTTATCAAGAGAGTATTAGCTGGTCTGCTCAAGGAGAGCTTTTGGCCAGGAATATCTCTAGCTCAACTGATTCTGGTTTAAGAACATGGTCCAAGTCTTACAACGAGCCTTCTGCATACCGTCCAGTACTGTCTTGGGGATCTTATGCTACTTGTGGGAGACGGGAGGCTATGGAGGACACACATTTCATTCTGCCCCATGTTTTCAATGAAAAGGATGTCTATGCTTTTGGTATCTTTGATGGCCATAGAGGCGCAGCAGCTGCGGAGTTTTCTTCTAGGGCTGTACCAGCAGTTTTGCAAACTATTGGTTTTACGGGCAGTCCTGCTAATGCATTAGTGGAAGCATTCCTTAGAACAGATACTGCCTTCAGAAAAGAGCTTGCTTCCTATCGCAAATCCAACAGATGTATCCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTATTGTAAGTGGGAACAAGCTATTTGTTGCTAATAGTGGTGATTGTCGGGCAATCTTATGTCGTGCCGGTAATCCCATTGCTCTGAGTAAGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATTCGTCAAGGGGGCCAAGTTCATTGGCAAGTTGATACCTGGAGAGTTGGTCTTCCTGCGCTTCAGGTCATGGCTAGCGATGGTCTGTGGGATGTGATGAGCAGTTTGGATGTGATAAATATAATAAAGGACACAGTTAAAGAGGCAGGCATGTGCTCTAAGAGGTTGGCTACTGAAGCTGTGGAACGTGGCAGCAAAGATAACATTACAGTTATTGTCGTTTTTTTAAGACCTGTATCGACAGCAGAGAGAATTTATTAG

Protein sequence

>Msa0067600

MVGIEIVEPNTCIRGCCTSSSIPLHLPPSSYSLLFPIARGAESVVYEGTLNGDKVAVKKPIFKLDHPGIATLIAAHAKPPNYMFFFKLYESSNLGHKLHVEEWAPTVNDALMITMQLAKALQYLHNLGILHRDVKPANILLDINLCPHLTDFGLAEYKSDIKGVSLENWKSSGKPTGGFHKKNMVGTLVYMAPEILRKELHSEKSDVYSFGISINELLTGVVPYTDLRAEAQASLSFLCVGIKGKLIELPLELEKYRLADCEVWKLAHTVLEMNYTEQQLTAAVVSDGLRPVLASEELGIPSRLVSMIRKCWDANPKSRPSFDEIVKELDFIMEHRKVKKVEDMHIRPCNLPVDQLVDKTYQESISWSAQGELLARNISSSTDSGLRTWSKSYNEPSAYRPVLSWGSYATCGRREAMEDTHFILPHVFNEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTIGFTGSPANALVEAFLRTDTAFRKELASYRKSNRCIQKDWHPGCTAIAAIVSGNKLFVANSGDCRAILCRAGNPIALSKDHVASCLQERERVIRQGGQVHWQVDTWRVGLPALQVMASDGLWDVMSSLDVINIIKDTVKEAGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY*