AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069290 MtrunA17_Chr1g0199821 96.535 202 7 0 1 202 1 202 2.49e-142 404
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069290 AT1G48850.2 73.171 205 46 3 2 202 3 202 6.17e-101 297
Msa0069290 AT1G48850.3 73.171 205 46 3 2 202 3 202 6.95e-101 297
Msa0069290 AT1G48850.1 73.171 205 46 3 2 202 3 202 3.20e-100 297

Find 103 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTATCAGTCTCCTTTC+TGG 0.119746 1_2:-37572055 None:intergenic
TAACTTCCTTGTTCGCTTCT+TGG 0.130786 1_2:-37570455 None:intergenic
GCTCCCATTTGATGGACTTC+TGG 0.222278 1_2:+37573245 Msa0069290:intron
GCGAGATGTCATTAGCTTAT+AGG 0.246076 1_2:+37572354 Msa0069290:CDS
GAGGGATCGGAGATTGGAAT+TGG 0.269061 1_2:-37570877 None:intergenic
AAAGCCACGTGGGCAGTAAC+TGG 0.271931 1_2:+37570568 Msa0069290:five_prime_UTR
TACATATGGGAACCACTTTC+GGG 0.279701 1_2:+37571690 Msa0069290:CDS
TGGTCATTGGTCCTTCTTGC+TGG 0.295483 1_2:-37570533 None:intergenic
CACTTTCGGGTTACAACATA+TGG 0.302913 1_2:+37571703 Msa0069290:CDS
ATTGCTATTGCTATTGCTAT+TGG 0.305443 1_2:-37570777 None:intergenic
CATGTATCAGTCTCCTTTCT+GGG 0.318592 1_2:-37572054 None:intergenic
TCGCAAAAGTTGAATTGAAT+TGG 0.335467 1_2:-37570670 None:intergenic
CTTCTTGCTGGTGTCTGCTT+TGG 0.340141 1_2:-37570521 None:intergenic
GTACATATGGGAACCACTTT+CGG 0.342196 1_2:+37571689 Msa0069290:CDS
TTTCCTCTTTGATCAGTATT+GGG 0.342486 1_2:-37572222 None:intergenic
TTGCTATTGCTATTGCTATT+GGG 0.343804 1_2:-37570776 None:intergenic
ATTTCCTCTTTGATCAGTAT+TGG 0.358775 1_2:-37572223 None:intergenic
AAATACTCTTTGTTTGTTTG+AGG 0.359683 1_2:-37570722 None:intergenic
CTCTTTGTTTGTTTGAGGTT+CGG 0.360793 1_2:-37570717 None:intergenic
CCTTTCTGGGAGTTGTAATT+CGG 0.369236 1_2:-37572041 None:intergenic
CGGGCAGCTGGGAGTACATA+TGG 0.371354 1_2:+37571676 Msa0069290:CDS
ACCATTGGAAGGGTTGCTTC+TGG 0.385048 1_2:+37572544 Msa0069290:CDS
TTTACAGAGATTCGGGCAGC+TGG 0.397683 1_2:+37571664 Msa0069290:intron
TAAAATACTCTCAGGAGTTT+CGG 0.400065 1_2:+37572077 Msa0069290:CDS
TGTCTGCTTTGGTAAGTTGT+TGG 0.406083 1_2:-37570510 None:intergenic
AAAGTTGAATTGAATTGGTT+TGG 0.413974 1_2:-37570665 None:intergenic
GGAGGAGAGGGATCGGAGAT+TGG 0.418731 1_2:-37570883 None:intergenic
GGAAGGAGTGAGGAAGGGTT+TGG 0.419419 1_2:-37570823 None:intergenic
AGGGATCGGAGATTGGAATT+GGG 0.422790 1_2:-37570876 None:intergenic
GTATGGTGTCAGATCAGTTC+AGG 0.431140 1_2:+37572409 Msa0069290:CDS
AGTTGTTGGTGAGTCGAGAA+TGG 0.450017 1_2:-37570496 None:intergenic
AGGAAGAGAAAGAATCGGTT+CGG 0.456406 1_2:-37570845 None:intergenic
GCAACCTATGACATGAAGTA+TGG 0.467320 1_2:+37572392 Msa0069290:CDS
GTTTGTTTGAGGTTCGGTAA+TGG 0.471048 1_2:-37570711 None:intergenic
AATTGAATTGGTTTGGTTGG+TGG 0.474469 1_2:-37570658 None:intergenic
GTTGTAATTCGGCTTTGACC+TGG 0.476712 1_2:-37572030 None:intergenic
TTGAATTGAATTGGTTTGGT+TGG 0.479419 1_2:-37570661 None:intergenic
CAGTATTGGGCACAAATACA+TGG 0.482313 1_2:-37572209 None:intergenic
TTGGGCACAAATACATGGAT+TGG 0.483473 1_2:-37572204 None:intergenic
GGATCCAGAAGTCCATCAAA+TGG 0.484828 1_2:-37573249 None:intergenic
GGTAGACGGAGGAGAGGGAT+CGG 0.486339 1_2:-37570890 None:intergenic
CGTGGGCAGTAACTGGGAAA+TGG 0.488897 1_2:+37570575 Msa0069290:five_prime_UTR
GGAAGAGAAAGAATCGGTTC+GGG 0.494003 1_2:-37570844 None:intergenic
GGTGTTGGATGTGTCATTGA+TGG 0.495772 1_2:+37571742 Msa0069290:CDS
CCGAATTACAACTCCCAGAA+AGG 0.500551 1_2:+37572041 Msa0069290:CDS
ATTGGAATTGGGAGAAAGGA+AGG 0.503710 1_2:-37570865 None:intergenic
AGGAGTGAGGAAGGGTTTGG+TGG 0.507069 1_2:-37570820 None:intergenic
GTGAGTCGAGAATGGGAAGA+TGG 0.507831 1_2:-37570488 None:intergenic
GTTGTTGGTGAGTCGAGAAT+GGG 0.508037 1_2:-37570495 None:intergenic
ATTGGTTTGGTTGGTGGCAA+TGG 0.512396 1_2:-37570652 None:intergenic
GAATCTCATGGAGGAGGTGT+TGG 0.513832 1_2:+37571727 Msa0069290:CDS
AACTCCTATATTTAGGGTGG+TGG 0.515942 1_2:+37572502 Msa0069290:intron
GGAGATTGGAATTGGGAGAA+AGG 0.519246 1_2:-37570869 None:intergenic
GGGCAGCTGGGAGTACATAT+GGG 0.522096 1_2:+37571677 Msa0069290:CDS
ACGGAGGTAGACGGAGGAGA+GGG 0.527565 1_2:-37570895 None:intergenic
AAGGAAGGAAGAGAAAGAAT+CGG 0.529630 1_2:-37570850 None:intergenic
GACGGAGGTAGACGGAGGAG+AGG 0.531416 1_2:-37570896 None:intergenic
TTAATTGCAGGAGTTACTAC+AGG 0.532875 1_2:+37572177 Msa0069290:intron
GATACATGTAAAATACTCTC+AGG 0.533691 1_2:+37572069 Msa0069290:CDS
GTTCTTGTGTATAGGAGGCC+AGG 0.534576 1_2:+37572012 Msa0069290:intron
TGTCATAGGTTGCATCCGCA+TGG 0.536508 1_2:-37572382 None:intergenic
GACACCATACTTCATGTCAT+AGG 0.537696 1_2:-37572396 None:intergenic
TCTTCTGCTAGGGAAACCAT+TGG 0.551202 1_2:+37572529 Msa0069290:CDS
GGTTCGGGAAGGAGTGAGGA+AGG 0.551542 1_2:-37570829 None:intergenic
GATCCAGAAGTCCATCAAAT+GGG 0.553304 1_2:-37573248 None:intergenic
AAGCCACGTGGGCAGTAACT+GGG 0.560152 1_2:+37570569 Msa0069290:five_prime_UTR
GTGGTGGTAGATCTTCTGCT+AGG 0.562776 1_2:+37572518 Msa0069290:CDS
GAAACGAGGACGGAGGTAGA+CGG 0.563398 1_2:-37570904 None:intergenic
CTCTGAAGCTGATATGCAAG+AGG 0.568295 1_2:+37571786 Msa0069290:CDS
ACCAGAAGCAACCCTTCCAA+TGG 0.569596 1_2:-37572545 None:intergenic
CATATGTTGTAACCCGAAAG+TGG 0.573615 1_2:-37571702 None:intergenic
TGTTTGAGGTTCGGTAATGG+TGG 0.573853 1_2:-37570708 None:intergenic
TGCTAGGGAAACCATTGGAA+GGG 0.574957 1_2:+37572534 Msa0069290:CDS
GTCATAGGTTGCATCCGCAT+GGG 0.577755 1_2:-37572381 None:intergenic
CTGCTAGGGAAACCATTGGA+AGG 0.577836 1_2:+37572533 Msa0069290:CDS
GTGAATCCAAGAAGCGAACA+AGG 0.578442 1_2:+37570449 Msa0069290:five_prime_UTR
TGGTGGTAGATCTTCTGCTA+GGG 0.582067 1_2:+37572519 Msa0069290:CDS
ACAACATATGGAGAATCTCA+TGG 0.584104 1_2:+37571715 Msa0069290:CDS
CAAAGCAGACACCAGCAAGA+AGG 0.588312 1_2:+37570522 Msa0069290:five_prime_UTR
TGCATATCAGCTTCAGAGAG+AGG 0.589694 1_2:-37571781 None:intergenic
TTACAGAGATTCGGGCAGCT+GGG 0.592616 1_2:+37571665 Msa0069290:intron
GCTTCAGAGAGAGGGAGGCG+AGG 0.596196 1_2:-37571772 None:intergenic
GCATATCAGCTTCAGAGAGA+GGG 0.596658 1_2:-37571780 None:intergenic
AGTAACTGGGAAATGGTGGT+AGG 0.600229 1_2:+37570582 Msa0069290:five_prime_UTR
GTGCCCAATACTGATCAAAG+AGG 0.603337 1_2:+37572219 Msa0069290:CDS
TATGGAGAATCTCATGGAGG+AGG 0.607485 1_2:+37571721 Msa0069290:CDS
TAGGTTGCATCCGCATGGGA+AGG 0.607769 1_2:-37572377 None:intergenic
ATACTCTCAGGAGTTTCGGA+AGG 0.610665 1_2:+37572081 Msa0069290:CDS
AGCTTATAGGCCTTCCCATG+CGG 0.616697 1_2:+37572367 Msa0069290:CDS
AATCGGTTCGGGAAGGAGTG+AGG 0.619223 1_2:-37570833 None:intergenic
GGTGGAGATCGAAGAAGCCA+TGG 0.622096 1_2:-37570802 None:intergenic
GCGTAATTCTAGCATAGTAG+TGG 0.622148 1_2:-37570623 None:intergenic
GTTCGGGAAGGAGTGAGGAA+GGG 0.624145 1_2:-37570828 None:intergenic
TCAGAGAGAGGGAGGCGAGG+AGG 0.627324 1_2:-37571769 None:intergenic
GAGAAAGAATCGGTTCGGGA+AGG 0.628737 1_2:-37570840 None:intergenic
TGCAAGAGGATCTTGACAGA+AGG 0.632234 1_2:+37571800 Msa0069290:CDS
AATAGCAATAGCAATAGCCA+TGG 0.636404 1_2:+37570785 Msa0069290:exon
GGGCAGTAACTGGGAAATGG+TGG 0.642610 1_2:+37570578 Msa0069290:five_prime_UTR
TATCAGCTTCAGAGAGAGGG+AGG 0.644707 1_2:-37571777 None:intergenic
GAAGGACCAATGACCAAACA+AGG 0.646764 1_2:+37570540 Msa0069290:five_prime_UTR
TTTCCCAGTTACTGCCCACG+TGG 0.653902 1_2:-37570572 None:intergenic
ACGAGGACGGAGGTAGACGG+AGG 0.699102 1_2:-37570901 None:intergenic
ACATATGGAGAATCTCATGG+AGG 0.763629 1_2:+37571718 Msa0069290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTGTTATTATTTTTA+TGG + chr1_2:37570978-37570997 Msa0069290:intron 10.0%
!! GAATTTCAACATTATTAAAT+TGG + chr1_2:37571257-37571276 Msa0069290:intron 15.0%
!! TGAGAATTGAAAAAAATATA+TGG + chr1_2:37571443-37571462 Msa0069290:intron 15.0%
!! AAAGAAATTTAACATTAGTA+TGG - chr1_2:37572639-37572658 None:intergenic 15.0%
!!! TTTCTTTAATGTTTTTTAAC+AGG + chr1_2:37572652-37572671 Msa0069290:intron 15.0%
!! TGATTAAAACGAATATTATA+GGG - chr1_2:37573163-37573182 None:intergenic 15.0%
!! ATGATTAAAACGAATATTAT+AGG - chr1_2:37573164-37573183 None:intergenic 15.0%
!! ATAACAACAATTCAAACAAA+CGG - chr1_2:37570970-37570989 None:intergenic 20.0%
!! ACAACATTAAGATTGAAAAA+TGG - chr1_2:37571072-37571091 None:intergenic 20.0%
!! TTTCAACATTATTAAATTGG+CGG + chr1_2:37571260-37571279 Msa0069290:intron 20.0%
!!! ATTTTATTGAAATGCTAGTA+AGG + chr1_2:37571910-37571929 Msa0069290:intron 20.0%
!!! TTTTATTGAAATGCTAGTAA+GGG + chr1_2:37571911-37571930 Msa0069290:intron 20.0%
!!! CTTTAAAGAATAACATTGTA+AGG + chr1_2:37571990-37572009 Msa0069290:intron 20.0%
!! TCGTATAATTTATTAATTGC+AGG + chr1_2:37572165-37572184 Msa0069290:intron 20.0%
!! TGTTCAGAAATATTCAATAA+AGG + chr1_2:37572261-37572280 Msa0069290:intron 20.0%
!!! CTAATAAAATGTTGTACTTT+TGG + chr1_2:37572312-37572331 Msa0069290:intron 20.0%
!! AAAATCCTTAAAAAATTTGC+AGG + chr1_2:37572580-37572599 Msa0069290:CDS 20.0%
!! CTGTATTGTTCTTTAATTAA+TGG - chr1_2:37572755-37572774 None:intergenic 20.0%
!!! ACTTCTTCTTTCTTATTTAT+GGG + chr1_2:37572839-37572858 Msa0069290:intron 20.0%
!!! TCATCTTGTTTTCAATATTA+GGG - chr1_2:37573039-37573058 None:intergenic 20.0%
!!! TTCATCTTGTTTTCAATATT+AGG - chr1_2:37573040-37573059 None:intergenic 20.0%
!! CAAGATACATATGAAAAATT+AGG + chr1_2:37573060-37573079 Msa0069290:intron 20.0%
!!! ATATACTGGTTATTTTGTTT+TGG + chr1_2:37573112-37573131 Msa0069290:intron 20.0%
! AAAGTTGAATTGAATTGGTT+TGG - chr1_2:37570668-37570687 None:intergenic 25.0%
!! AAATACTCTTTGTTTGTTTG+AGG - chr1_2:37570725-37570744 None:intergenic 25.0%
! ATGAAAGTAGCAGAAAATAA+AGG - chr1_2:37571120-37571139 None:intergenic 25.0%
! TTGAAGTTGAAAATAAAGCT+GGG - chr1_2:37571490-37571509 None:intergenic 25.0%
!! TTTGAAGTTGAAAATAAAGC+TGG - chr1_2:37571491-37571510 None:intergenic 25.0%
! ACTTCAAATTCCAATTAGTT+TGG + chr1_2:37571503-37571522 Msa0069290:intron 25.0%
!! TGATGTATTTTACAGAGATT+CGG + chr1_2:37571656-37571675 Msa0069290:intron 25.0%
! TTACAATAGTTATGAGAAGA+CGG - chr1_2:37571849-37571868 None:intergenic 25.0%
! TAGAGGAATAATGTATAAGA+TGG + chr1_2:37571887-37571906 Msa0069290:intron 25.0%
! TCTTTACAGTGTAATAAGTT+AGG + chr1_2:37572438-37572457 Msa0069290:intron 25.0%
! TTAACCTTTCAATAGAAACT+TGG + chr1_2:37572715-37572734 Msa0069290:intron 25.0%
! AATACCAAGTTTCTATTGAA+AGG - chr1_2:37572722-37572741 None:intergenic 25.0%
! TTTCAATAGAAACTTGGTAT+TGG + chr1_2:37572721-37572740 Msa0069290:intron 25.0%
! TTCAATAGAAACTTGGTATT+GGG + chr1_2:37572722-37572741 Msa0069290:intron 25.0%
!! CACTTCTTCTTTCTTATTTA+TGG + chr1_2:37572838-37572857 Msa0069290:intron 25.0%
!!! CAATGTGAATGATTTGTTTT+AGG - chr1_2:37572966-37572985 None:intergenic 25.0%
! TAACCAGTATATTATAGACA+GGG - chr1_2:37573104-37573123 None:intergenic 25.0%
! ATAACCAGTATATTATAGAC+AGG - chr1_2:37573105-37573124 None:intergenic 25.0%
! CCATTTCCAAAACAATTATA+GGG - chr1_2:37573139-37573158 None:intergenic 25.0%
! ACCATTTCCAAAACAATTAT+AGG - chr1_2:37573140-37573159 None:intergenic 25.0%
!! TTTTATCCTTGTTTGGTCAT+TGG - chr1_2:37570549-37570568 None:intergenic 30.0%
!! TTGAATTGAATTGGTTTGGT+TGG - chr1_2:37570664-37570683 None:intergenic 30.0%
TCGCAAAAGTTGAATTGAAT+TGG - chr1_2:37570673-37570692 None:intergenic 30.0%
! TTGCTATTGCTATTGCTATT+GGG - chr1_2:37570779-37570798 None:intergenic 30.0%
! ATTGCTATTGCTATTGCTAT+TGG - chr1_2:37570780-37570799 None:intergenic 30.0%
!!! TACTAACGGAGTTGTTTTTT+GGG - chr1_2:37570930-37570949 None:intergenic 30.0%
!!! ATACTAACGGAGTTGTTTTT+TGG - chr1_2:37570931-37570950 None:intergenic 30.0%
AGTAAAGAGAAAAGAGAAAG+CGG - chr1_2:37571045-37571064 None:intergenic 30.0%
ACTTTGGTACAGAAAAATTC+AGG - chr1_2:37571158-37571177 None:intergenic 30.0%
ACTGCAATGTCAATATTGTT+AGG + chr1_2:37571310-37571329 Msa0069290:intron 30.0%
TAGTCTCAAACCAAACTAAT+TGG - chr1_2:37571516-37571535 None:intergenic 30.0%
! GATGTATTTTACAGAGATTC+GGG + chr1_2:37571657-37571676 Msa0069290:intron 30.0%
AACTATTGTAAAAAGCCCTT+TGG + chr1_2:37571858-37571877 Msa0069290:intron 30.0%
CATTATGAATGATAGCTGAT+AGG + chr1_2:37571941-37571960 Msa0069290:intron 30.0%
ATTGTAAGGTTCTTGTGTAT+AGG + chr1_2:37572004-37572023 Msa0069290:intron 30.0%
GATACATGTAAAATACTCTC+AGG + chr1_2:37572069-37572088 Msa0069290:CDS 30.0%
TAAAATACTCTCAGGAGTTT+CGG + chr1_2:37572077-37572096 Msa0069290:CDS 30.0%
TTCTTCTTACTGCTATTAAC+TGG + chr1_2:37572111-37572130 Msa0069290:intron 30.0%
TCTTCTTACTGCTATTAACT+GGG + chr1_2:37572112-37572131 Msa0069290:intron 30.0%
TTTCCTCTTTGATCAGTATT+GGG - chr1_2:37572225-37572244 None:intergenic 30.0%
ATTTCCTCTTTGATCAGTAT+TGG - chr1_2:37572226-37572245 None:intergenic 30.0%
TTTATTAGCCACGTAAATCA+AGG - chr1_2:37572300-37572319 None:intergenic 30.0%
!!! GTACTTTTGGATACTTTTTC+AGG + chr1_2:37572325-37572344 Msa0069290:intron 30.0%
ACATCTGAACTCCTATATTT+AGG + chr1_2:37572495-37572514 Msa0069290:intron 30.0%
CATCTGAACTCCTATATTTA+GGG + chr1_2:37572496-37572515 Msa0069290:intron 30.0%
!!! CAGTTCCTGCAAATTTTTTA+AGG - chr1_2:37572588-37572607 None:intergenic 30.0%
TAAAAAATTTGCAGGAACTG+AGG + chr1_2:37572588-37572607 Msa0069290:CDS 30.0%
CTAACATGATAGATCATTCT+TGG - chr1_2:37572678-37572697 None:intergenic 30.0%
CAAGAATGATCTATCATGTT+AGG + chr1_2:37572676-37572695 Msa0069290:intron 30.0%
AAGAACAATACAGAACTTCA+AGG + chr1_2:37572762-37572781 Msa0069290:intron 30.0%
AGAACAATACAGAACTTCAA+GGG + chr1_2:37572763-37572782 Msa0069290:intron 30.0%
TGAGATAGTTGTAAGAAATG+AGG - chr1_2:37572872-37572891 None:intergenic 30.0%
! AAGTAGTTAGTTGGTTAGTT+GGG - chr1_2:37572896-37572915 None:intergenic 30.0%
! TATGTGTTTGTTAGGACATT+TGG - chr1_2:37572933-37572952 None:intergenic 30.0%
GGTGATATTATGTGTTTGTT+AGG - chr1_2:37572941-37572960 None:intergenic 30.0%
!!! GTGAATGATTTGTTTTAGGT+GGG - chr1_2:37572962-37572981 None:intergenic 30.0%
!!! TGTGAATGATTTGTTTTAGG+TGG - chr1_2:37572963-37572982 None:intergenic 30.0%
! GTTTTCAATATTAGGGAACT+TGG - chr1_2:37573032-37573051 None:intergenic 30.0%
! TTTGGTCCCTATAATTGTTT+TGG + chr1_2:37573130-37573149 Msa0069290:intron 30.0%
!!! CCCTATAATTGTTTTGGAAA+TGG + chr1_2:37573136-37573155 Msa0069290:intron 30.0%
!!! GTGGCTTTTTTATCCTTGTT+TGG - chr1_2:37570556-37570575 None:intergenic 35.0%
!! AATTGAATTGGTTTGGTTGG+TGG - chr1_2:37570661-37570680 None:intergenic 35.0%
! CTCTTTGTTTGTTTGAGGTT+CGG - chr1_2:37570720-37570739 None:intergenic 35.0%
AATAGCAATAGCAATAGCCA+TGG + chr1_2:37570785-37570804 Msa0069290:exon 35.0%
AAGGAAGGAAGAGAAAGAAT+CGG - chr1_2:37570853-37570872 None:intergenic 35.0%
!!! ACTAACGGAGTTGTTTTTTG+GGG - chr1_2:37570929-37570948 None:intergenic 35.0%
ACAGAGAGAGAGAATACTAA+CGG - chr1_2:37570944-37570963 None:intergenic 35.0%
! ACCAAAGTTTTCCAGTTGTA+AGG + chr1_2:37571170-37571189 Msa0069290:intron 35.0%
TCCTTACAACTGGAAAACTT+TGG - chr1_2:37571174-37571193 None:intergenic 35.0%
! AAGTTTTCCAGTTGTAAGGA+TGG + chr1_2:37571174-37571193 Msa0069290:intron 35.0%
ATGAATTCCATCCTTACAAC+TGG - chr1_2:37571184-37571203 None:intergenic 35.0%
CAATGTCAATATTGTTAGGC+TGG + chr1_2:37571314-37571333 Msa0069290:intron 35.0%
TTAATCACACAAGCTGATGT+AGG + chr1_2:37571391-37571410 Msa0069290:intron 35.0%
TCTTAGGAAGTCTAGACTAA+TGG + chr1_2:37571592-37571611 Msa0069290:intron 35.0%
ACTAATGGTACTGTGATTGA+TGG + chr1_2:37571607-37571626 Msa0069290:intron 35.0%
ACAACATATGGAGAATCTCA+TGG + chr1_2:37571715-37571734 Msa0069290:CDS 35.0%
! AGACGGTGAGATAATTTTGA+AGG - chr1_2:37571832-37571851 None:intergenic 35.0%
TATTGTAAAAAGCCCTTTGG+AGG + chr1_2:37571861-37571880 Msa0069290:intron 35.0%
TTAATTGCAGGAGTTACTAC+AGG + chr1_2:37572177-37572196 Msa0069290:intron 35.0%
GTGGTCATTAGATAGGAAAT+GGG - chr1_2:37572814-37572833 None:intergenic 35.0%
TGTGGTCATTAGATAGGAAA+TGG - chr1_2:37572815-37572834 None:intergenic 35.0%
!! AAGAAAGAAGAAGTGTCATG+TGG - chr1_2:37572833-37572852 None:intergenic 35.0%
CAAGTAGTTAGTTGGTTAGT+TGG - chr1_2:37572897-37572916 None:intergenic 35.0%
GGGTTTATCAAGTAGTTAGT+TGG - chr1_2:37572905-37572924 None:intergenic 35.0%
TGTTAGGACATTTGGTAAGA+GGG - chr1_2:37572925-37572944 None:intergenic 35.0%
TTGTTAGGACATTTGGTAAG+AGG - chr1_2:37572926-37572945 None:intergenic 35.0%
TCACCCTGTCTATAATATAC+TGG + chr1_2:37573098-37573117 Msa0069290:intron 35.0%
TAACTTCCTTGTTCGCTTCT+TGG - chr1_2:37570458-37570477 None:intergenic 40.0%
TGTCTGCTTTGGTAAGTTGT+TGG - chr1_2:37570513-37570532 None:intergenic 40.0%
ACAAGGATAAAAAAGCCACG+TGG + chr1_2:37570557-37570576 Msa0069290:five_prime_UTR 40.0%
CAAGGATAAAAAAGCCACGT+GGG + chr1_2:37570558-37570577 Msa0069290:five_prime_UTR 40.0%
GCGTAATTCTAGCATAGTAG+TGG - chr1_2:37570626-37570645 None:intergenic 40.0%
! GTTTGTTTGAGGTTCGGTAA+TGG - chr1_2:37570714-37570733 None:intergenic 40.0%
AGGAAGAGAAAGAATCGGTT+CGG - chr1_2:37570848-37570867 None:intergenic 40.0%
ATTGGAATTGGGAGAAAGGA+AGG - chr1_2:37570868-37570887 None:intergenic 40.0%
!!! AGTTGTTTTTTGGGGAAACG+AGG - chr1_2:37570921-37570940 None:intergenic 40.0%
!! AATTCAGGTTGCACAAAGAG+TGG - chr1_2:37571143-37571162 None:intergenic 40.0%
ATTGACATTGCAGTTGAGCT+AGG - chr1_2:37571304-37571323 None:intergenic 40.0%
!!! GTTACTGCTACTTTTCATGC+TGG + chr1_2:37571564-37571583 Msa0069290:intron 40.0%
ATGGTACTGTGATTGATGGA+TGG + chr1_2:37571611-37571630 Msa0069290:intron 40.0%
! TGGTACTGTGATTGATGGAT+GGG + chr1_2:37571612-37571631 Msa0069290:intron 40.0%
GTACATATGGGAACCACTTT+CGG + chr1_2:37571689-37571708 Msa0069290:CDS 40.0%
TACATATGGGAACCACTTTC+GGG + chr1_2:37571690-37571709 Msa0069290:CDS 40.0%
CATATGTTGTAACCCGAAAG+TGG - chr1_2:37571705-37571724 None:intergenic 40.0%
!! CACTTTCGGGTTACAACATA+TGG + chr1_2:37571703-37571722 Msa0069290:CDS 40.0%
ACATATGGAGAATCTCATGG+AGG + chr1_2:37571718-37571737 Msa0069290:CDS 40.0%
ATTCCTCTATAGCCTCCAAA+GGG - chr1_2:37571876-37571895 None:intergenic 40.0%
TATTCCTCTATAGCCTCCAA+AGG - chr1_2:37571877-37571896 None:intergenic 40.0%
GTAAGGTTCTTGTGTATAGG+AGG + chr1_2:37572007-37572026 Msa0069290:intron 40.0%
! CCTTTCTGGGAGTTGTAATT+CGG - chr1_2:37572044-37572063 None:intergenic 40.0%
CATGTATCAGTCTCCTTTCT+GGG - chr1_2:37572057-37572076 None:intergenic 40.0%
ACATGTATCAGTCTCCTTTC+TGG - chr1_2:37572058-37572077 None:intergenic 40.0%
TTGGGCACAAATACATGGAT+TGG - chr1_2:37572207-37572226 None:intergenic 40.0%
! CAGTATTGGGCACAAATACA+TGG - chr1_2:37572212-37572231 None:intergenic 40.0%
AACCATGACCTTGATTTACG+TGG + chr1_2:37572289-37572308 Msa0069290:intron 40.0%
! GCGAGATGTCATTAGCTTAT+AGG + chr1_2:37572354-37572373 Msa0069290:CDS 40.0%
GCAACCTATGACATGAAGTA+TGG + chr1_2:37572392-37572411 Msa0069290:CDS 40.0%
GACACCATACTTCATGTCAT+AGG - chr1_2:37572399-37572418 None:intergenic 40.0%
CTGAACTCCTATATTTAGGG+TGG + chr1_2:37572499-37572518 Msa0069290:intron 40.0%
! AACTCCTATATTTAGGGTGG+TGG + chr1_2:37572502-37572521 Msa0069290:intron 40.0%
TCTACCACCACCCTAAATAT+AGG - chr1_2:37572509-37572528 None:intergenic 40.0%
GTGTCATGTGGTCATTAGAT+AGG - chr1_2:37572821-37572840 None:intergenic 40.0%
ACTGCAAGTTGTTCAACTTG+AGG - chr1_2:37572990-37573009 None:intergenic 40.0%
! TGTTTTCAGCTCCCATTTGA+TGG + chr1_2:37573237-37573256 Msa0069290:intron 40.0%
GATCCAGAAGTCCATCAAAT+GGG - chr1_2:37573251-37573270 None:intergenic 40.0%
GTGAATCCAAGAAGCGAACA+AGG + chr1_2:37570449-37570468 Msa0069290:five_prime_UTR 45.0%
! GTTGTTGGTGAGTCGAGAAT+GGG - chr1_2:37570498-37570517 None:intergenic 45.0%
! AGTTGTTGGTGAGTCGAGAA+TGG - chr1_2:37570499-37570518 None:intergenic 45.0%
GAAGGACCAATGACCAAACA+AGG + chr1_2:37570540-37570559 Msa0069290:five_prime_UTR 45.0%
AGTAACTGGGAAATGGTGGT+AGG + chr1_2:37570582-37570601 Msa0069290:five_prime_UTR 45.0%
!! ATTGGTTTGGTTGGTGGCAA+TGG - chr1_2:37570655-37570674 None:intergenic 45.0%
! TGTTTGAGGTTCGGTAATGG+TGG - chr1_2:37570711-37570730 None:intergenic 45.0%
! GGAAGAGAAAGAATCGGTTC+GGG - chr1_2:37570847-37570866 None:intergenic 45.0%
GGAGATTGGAATTGGGAGAA+AGG - chr1_2:37570872-37570891 None:intergenic 45.0%
AGGGATCGGAGATTGGAATT+GGG - chr1_2:37570879-37570898 None:intergenic 45.0%
!!! GTTTTTTGGGGAAACGAGGA+CGG - chr1_2:37570917-37570936 None:intergenic 45.0%
TTTCATGCTGGTCGCATCTT+AGG + chr1_2:37571576-37571595 Msa0069290:intron 45.0%
TATGGAGAATCTCATGGAGG+AGG + chr1_2:37571721-37571740 Msa0069290:CDS 45.0%
! GGTGTTGGATGTGTCATTGA+TGG + chr1_2:37571742-37571761 Msa0069290:CDS 45.0%
GCATATCAGCTTCAGAGAGA+GGG - chr1_2:37571783-37571802 None:intergenic 45.0%
TGCATATCAGCTTCAGAGAG+AGG - chr1_2:37571784-37571803 None:intergenic 45.0%
!! CTCTGAAGCTGATATGCAAG+AGG + chr1_2:37571786-37571805 Msa0069290:CDS 45.0%
TGCAAGAGGATCTTGACAGA+AGG + chr1_2:37571800-37571819 Msa0069290:CDS 45.0%
! GTTGTAATTCGGCTTTGACC+TGG - chr1_2:37572033-37572052 None:intergenic 45.0%
CCGAATTACAACTCCCAGAA+AGG + chr1_2:37572041-37572060 Msa0069290:CDS 45.0%
ATACTCTCAGGAGTTTCGGA+AGG + chr1_2:37572081-37572100 Msa0069290:CDS 45.0%
GTGCCCAATACTGATCAAAG+AGG + chr1_2:37572219-37572238 Msa0069290:CDS 45.0%
AGCCACGTAAATCAAGGTCA+TGG - chr1_2:37572294-37572313 None:intergenic 45.0%
! GTATGGTGTCAGATCAGTTC+AGG + chr1_2:37572409-37572428 Msa0069290:CDS 45.0%
TGGTGGTAGATCTTCTGCTA+GGG + chr1_2:37572519-37572538 Msa0069290:CDS 45.0%
TCTTCTGCTAGGGAAACCAT+TGG + chr1_2:37572529-37572548 Msa0069290:CDS 45.0%
TGCTAGGGAAACCATTGGAA+GGG + chr1_2:37572534-37572553 Msa0069290:CDS 45.0%
GATAGGAAATGGGAGCCTTT+CGG - chr1_2:37572804-37572823 None:intergenic 45.0%
GGATCCAGAAGTCCATCAAA+TGG - chr1_2:37573252-37573271 None:intergenic 45.0%
TATGAGATGGGGGAAAGAGA+CGG - chr1_2:37573273-37573292 None:intergenic 45.0%
!! TATATTATTATTACATTATT+TGG + chr1_2:37571230-37571249 Msa0069290:intron 5.0%
GTGAGTCGAGAATGGGAAGA+TGG - chr1_2:37570491-37570510 None:intergenic 50.0%
CTTCTTGCTGGTGTCTGCTT+TGG - chr1_2:37570524-37570543 None:intergenic 50.0%
CAAAGCAGACACCAGCAAGA+AGG + chr1_2:37570522-37570541 Msa0069290:five_prime_UTR 50.0%
TGGTCATTGGTCCTTCTTGC+TGG - chr1_2:37570536-37570555 None:intergenic 50.0%
!! GAGAAAGAATCGGTTCGGGA+AGG - chr1_2:37570843-37570862 None:intergenic 50.0%
GAGGGATCGGAGATTGGAAT+TGG - chr1_2:37570880-37570899 None:intergenic 50.0%
TGCAGTTGAGCTAGGCCTTA+CGG - chr1_2:37571296-37571315 None:intergenic 50.0%
TTAGGCTGGACACTTTCACC+CGG + chr1_2:37571328-37571347 Msa0069290:intron 50.0%
TCACACAAGCTGATGTAGGC+AGG + chr1_2:37571395-37571414 Msa0069290:intron 50.0%
TTTACAGAGATTCGGGCAGC+TGG + chr1_2:37571664-37571683 Msa0069290:intron 50.0%
TTACAGAGATTCGGGCAGCT+GGG + chr1_2:37571665-37571684 Msa0069290:intron 50.0%
! GAATCTCATGGAGGAGGTGT+TGG + chr1_2:37571727-37571746 Msa0069290:CDS 50.0%
TATCAGCTTCAGAGAGAGGG+AGG - chr1_2:37571780-37571799 None:intergenic 50.0%
! AAGCCCTTTGGAGGCTATAG+AGG + chr1_2:37571870-37571889 Msa0069290:intron 50.0%
GTTCTTGTGTATAGGAGGCC+AGG + chr1_2:37572012-37572031 Msa0069290:intron 50.0%
AGCTTATAGGCCTTCCCATG+CGG + chr1_2:37572367-37572386 Msa0069290:CDS 50.0%
GTCATAGGTTGCATCCGCAT+GGG - chr1_2:37572384-37572403 None:intergenic 50.0%
TGTCATAGGTTGCATCCGCA+TGG - chr1_2:37572385-37572404 None:intergenic 50.0%
GTGGTGGTAGATCTTCTGCT+AGG + chr1_2:37572518-37572537 Msa0069290:CDS 50.0%
CTGCTAGGGAAACCATTGGA+AGG + chr1_2:37572533-37572552 Msa0069290:CDS 50.0%
ACCATTGGAAGGGTTGCTTC+TGG + chr1_2:37572544-37572563 Msa0069290:CDS 50.0%
ACCAGAAGCAACCCTTCCAA+TGG - chr1_2:37572548-37572567 None:intergenic 50.0%
!! GCTCCCATTTGATGGACTTC+TGG + chr1_2:37573245-37573264 Msa0069290:intron 50.0%
AAAGCCACGTGGGCAGTAAC+TGG + chr1_2:37570568-37570587 Msa0069290:five_prime_UTR 55.0%
AAGCCACGTGGGCAGTAACT+GGG + chr1_2:37570569-37570588 Msa0069290:five_prime_UTR 55.0%
TTTCCCAGTTACTGCCCACG+TGG - chr1_2:37570575-37570594 None:intergenic 55.0%
CGTGGGCAGTAACTGGGAAA+TGG + chr1_2:37570575-37570594 Msa0069290:five_prime_UTR 55.0%
GGGCAGTAACTGGGAAATGG+TGG + chr1_2:37570578-37570597 Msa0069290:five_prime_UTR 55.0%
GGTGGAGATCGAAGAAGCCA+TGG - chr1_2:37570805-37570824 None:intergenic 55.0%
AGGAGTGAGGAAGGGTTTGG+TGG - chr1_2:37570823-37570842 None:intergenic 55.0%
GGAAGGAGTGAGGAAGGGTT+TGG - chr1_2:37570826-37570845 None:intergenic 55.0%
GTTCGGGAAGGAGTGAGGAA+GGG - chr1_2:37570831-37570850 None:intergenic 55.0%
!! AATCGGTTCGGGAAGGAGTG+AGG - chr1_2:37570836-37570855 None:intergenic 55.0%
GAAACGAGGACGGAGGTAGA+CGG - chr1_2:37570907-37570926 None:intergenic 55.0%
!! TTTTGGGGAAACGAGGACGG+AGG - chr1_2:37570914-37570933 None:intergenic 55.0%
TAGGCTGGACACTTTCACCC+GGG + chr1_2:37571329-37571348 Msa0069290:intron 55.0%
! GGGCAGCTGGGAGTACATAT+GGG + chr1_2:37571677-37571696 Msa0069290:CDS 55.0%
TAGGTTGCATCCGCATGGGA+AGG - chr1_2:37572380-37572399 None:intergenic 55.0%
GAAATGGGAGCCTTTCGGCA+GGG - chr1_2:37572799-37572818 None:intergenic 55.0%
GGTTCGGGAAGGAGTGAGGA+AGG - chr1_2:37570832-37570851 None:intergenic 60.0%
GGAGGAGAGGGATCGGAGAT+TGG - chr1_2:37570886-37570905 None:intergenic 60.0%
GGTAGACGGAGGAGAGGGAT+CGG - chr1_2:37570893-37570912 None:intergenic 60.0%
ACGGAGGTAGACGGAGGAGA+GGG - chr1_2:37570898-37570917 None:intergenic 60.0%
GAGCAGAACTGCGATGTCCC+GGG - chr1_2:37571349-37571368 None:intergenic 60.0%
CGAGCAGAACTGCGATGTCC+CGG - chr1_2:37571350-37571369 None:intergenic 60.0%
ACATCGCAGTTCTGCTCGCG+AGG + chr1_2:37571352-37571371 Msa0069290:intron 60.0%
! CGGGCAGCTGGGAGTACATA+TGG + chr1_2:37571676-37571695 Msa0069290:CDS 60.0%
TCTGCAACCTCCCTGCCGAA+AGG + chr1_2:37572786-37572805 Msa0069290:intron 60.0%
GGAAATGGGAGCCTTTCGGC+AGG - chr1_2:37572800-37572819 None:intergenic 60.0%
GACGGAGGTAGACGGAGGAG+AGG - chr1_2:37570899-37570918 None:intergenic 65.0%
ACGAGGACGGAGGTAGACGG+AGG - chr1_2:37570904-37570923 None:intergenic 65.0%
GGCGGTGTCTGCTGTCCGTA+AGG + chr1_2:37571278-37571297 Msa0069290:intron 65.0%
TCAGAGAGAGGGAGGCGAGG+AGG - chr1_2:37571772-37571791 None:intergenic 65.0%
GCTTCAGAGAGAGGGAGGCG+AGG - chr1_2:37571775-37571794 None:intergenic 65.0%
ATGGGAGCCTTTCGGCAGGG+AGG - chr1_2:37572796-37572815 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 37570439 37573293 37570439 ID=Msa0069290;Name=Msa0069290
chr1_2 mRNA 37570439 37573293 37570439 ID=Msa0069290-mRNA-1;Parent=Msa0069290;Name=Msa0069290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=365|0.83|0.71|0.85|1|1|7|0|216
chr1_2 exon 37570439 37570942 37570439 ID=Msa0069290-mRNA-1:exon:11815;Parent=Msa0069290-mRNA-1
chr1_2 exon 37571671 37571821 37571671 ID=Msa0069290-mRNA-1:exon:11816;Parent=Msa0069290-mRNA-1
chr1_2 exon 37572026 37572102 37572026 ID=Msa0069290-mRNA-1:exon:11817;Parent=Msa0069290-mRNA-1
chr1_2 exon 37572187 37572245 37572187 ID=Msa0069290-mRNA-1:exon:11818;Parent=Msa0069290-mRNA-1
chr1_2 exon 37572347 37572430 37572347 ID=Msa0069290-mRNA-1:exon:11819;Parent=Msa0069290-mRNA-1
chr1_2 exon 37572517 37572609 37572517 ID=Msa0069290-mRNA-1:exon:11820;Parent=Msa0069290-mRNA-1
chr1_2 exon 37573246 37573293 37573246 ID=Msa0069290-mRNA-1:exon:11821;Parent=Msa0069290-mRNA-1
chr1_2 five_prime_UTR 37570439 37570803 37570439 ID=Msa0069290-mRNA-1:five_prime_utr;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37570804 37570942 37570804 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37571671 37571821 37571671 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37572026 37572102 37572026 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37572187 37572245 37572187 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37572347 37572430 37572347 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37572517 37572609 37572517 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
chr1_2 CDS 37573246 37573293 37573246 ID=Msa0069290-mRNA-1:cds;Parent=Msa0069290-mRNA-1
Gene Sequence

>Msa0069290

ATGGCTTCTTCGATCTCCACCAAACCCTTCCTCACTCCTTCCCGAACCGATTCTTTCTCTTCCTTCCTTTCTCCCAATTCCAATCTCCGATCCCTCTCCTCCGTCTACCTCCGTCCTCGTTTCCCCAAAAAACAACTCCAGATTCGGGCAGCTGGGAGTACATATGGGAACCACTTTCGGGTTACAACATATGGAGAATCTCATGGAGGAGGTGTTGGATGTGTCATTGATGGATGTCCTCCTCGCCTCCCTCTCTCTGAAGCTGATATGCAAGAGGATCTTGACAGAAGGAGGCCAGGTCAAAGCCGAATTACAACTCCCAGAAAGGAGACTGATACATGTAAAATACTCTCAGGAGTTTCGGAAGGAGTTACTACAGGAACTCCAATCCATGTATTTGTGCCCAATACTGATCAAAGAGGAAATGATTATAGCGAGATGTCATTAGCTTATAGGCCTTCCCATGCGGATGCAACCTATGACATGAAGTATGGTGTCAGATCAGTTCAGGGTGGTGGTAGATCTTCTGCTAGGGAAACCATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAAAATTTGCAGGAACTGAGCTCCCATTTGATGGACTTCTGGATCCGTCTCTTTCCCCCATCTCATAA

Protein sequence

>Msa0069290

MASSISTKPFLTPSRTDSFSSFLSPNSNLRSLSSVYLRPRFPKKQLQIRAAGSTYGNHFRVTTYGESHGGGVGCVIDGCPPRLPLSEADMQEDLDRRRPGQSRITTPRKETDTCKILSGVSEGVTTGTPIHVFVPNTDQRGNDYSEMSLAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKKFAGTELPFDGLLDPSLSPIS*