Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464370 | XP_003604604.2 | 97.679 | 517 | 9 | 1 | 1 | 517 | 1 | 514 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464370 | sp|F4IYM4|DEX1_ARATH | 64.648 | 512 | 155 | 5 | 33 | 518 | 26 | 537 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464370 | G7JLW6 | 97.679 | 517 | 9 | 1 | 1 | 517 | 1 | 514 | 0.0 | 1022 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014600 | Msa1464370 | 0.800403 | 1.465388e-48 | -8.615850e-47 |
| Msa0028340 | Msa1464370 | 0.870889 | 1.037022e-66 | -8.615850e-47 |
| Msa0035120 | Msa1464370 | 0.800395 | 1.470417e-48 | -8.615850e-47 |
| Msa0035320 | Msa1464370 | 0.878438 | 2.807211e-69 | -8.615850e-47 |
| Msa0035390 | Msa1464370 | 0.804532 | 2.064567e-49 | -8.615850e-47 |
| Msa0047640 | Msa1464370 | 0.800488 | 1.407685e-48 | -8.615850e-47 |
| Msa0064920 | Msa1464370 | 0.819724 | 9.994153e-53 | -8.615850e-47 |
| Msa0069290 | Msa1464370 | 0.803526 | 3.342630e-49 | -8.615850e-47 |
| Msa0076170 | Msa1464370 | 0.869152 | 3.833755e-66 | -8.615850e-47 |
| Msa0089980 | Msa1464370 | 0.857691 | 1.373196e-62 | -8.615850e-47 |
| Msa0090010 | Msa1464370 | 0.850509 | 1.622104e-60 | -8.615850e-47 |
| Msa0092940 | Msa1464370 | 0.817723 | 2.843811e-52 | -8.615850e-47 |
| Msa0104140 | Msa1464370 | 0.810689 | 1.017462e-50 | -8.615850e-47 |
| Msa0116270 | Msa1464370 | 0.832122 | 1.131861e-55 | -8.615850e-47 |
| Msa1353550 | Msa1464370 | 0.836145 | 1.110979e-56 | -8.615850e-47 |
| Msa1366550 | Msa1464370 | 0.829766 | 4.285013e-55 | -8.615850e-47 |
| Msa1372790 | Msa1464370 | 0.810349 | 1.204712e-50 | -8.615850e-47 |
| Msa1375110 | Msa1464370 | 0.819961 | 8.823136e-53 | -8.615850e-47 |
| Msa1376000 | Msa1464370 | 0.802263 | 6.096272e-49 | -8.615850e-47 |
| Msa1377810 | Msa1464370 | 0.839108 | 1.929496e-57 | -8.615850e-47 |
| Msa1393820 | Msa1464370 | 0.837351 | 5.470832e-57 | -8.615850e-47 |
| Msa1401510 | Msa1464370 | 0.833025 | 6.758426e-56 | -8.615850e-47 |
| Msa1403710 | Msa1464370 | 0.822308 | 2.538970e-53 | -8.615850e-47 |
| Msa1409500 | Msa1464370 | 0.804945 | 1.692669e-49 | -8.615850e-47 |
| Msa1420250 | Msa1464370 | 0.855399 | 6.474922e-62 | -8.615850e-47 |
| Msa1426910 | Msa1464370 | 0.804511 | 2.085902e-49 | -8.615850e-47 |
| Msa1435260 | Msa1464370 | 0.813795 | 2.135818e-51 | -8.615850e-47 |
| Msa1440900 | Msa1464370 | 0.873957 | 9.824458e-68 | -8.615850e-47 |
| Msa1443310 | Msa1464370 | 0.813138 | 2.978633e-51 | -8.615850e-47 |
| Msa1460880 | Msa1464370 | 0.823764 | 1.161834e-53 | -8.615850e-47 |
| Msa1461370 | Msa1464370 | 0.811702 | 6.133260e-51 | -8.615850e-47 |
| Msa1463010 | Msa1464370 | 0.803279 | 3.760686e-49 | -8.615850e-47 |
| Msa1463030 | Msa1464370 | 0.829643 | 4.588639e-55 | -8.615850e-47 |
| Msa1464370 | Msa1467000 | 0.811693 | 6.162960e-51 | -8.615850e-47 |
| Msa0608270 | Msa1464370 | 0.814114 | 1.816449e-51 | -8.615850e-47 |
| Msa0615030 | Msa1464370 | 0.801233 | 9.919950e-49 | -8.615850e-47 |
| Msa0615060 | Msa1464370 | 0.805211 | 1.489274e-49 | -8.615850e-47 |
| Msa0626270 | Msa1464370 | 0.880620 | 4.725106e-70 | -8.615850e-47 |
| Msa0626460 | Msa1464370 | 0.868384 | 6.795458e-66 | -8.615850e-47 |
| Msa0648830 | Msa1464370 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa0664540 | Msa1464370 | 0.874559 | 6.142341e-68 | -8.615850e-47 |
| Msa0689760 | Msa1464370 | 0.858843 | 6.237878e-63 | -8.615850e-47 |
| Msa0691340 | Msa1464370 | 0.894606 | 2.105111e-75 | -8.615850e-47 |
| Msa0698100 | Msa1464370 | 0.823690 | 1.209338e-53 | -8.615850e-47 |
| Msa0716860 | Msa1464370 | 0.838490 | 2.788617e-57 | -8.615850e-47 |
| Msa0748880 | Msa1464370 | 0.818622 | 1.780766e-52 | -8.615850e-47 |
| Msa0749400 | Msa1464370 | 0.809910 | 1.497867e-50 | -8.615850e-47 |
| Msa0750160 | Msa1464370 | 0.811122 | 8.199246e-51 | -8.615850e-47 |
| Msa0760770 | Msa1464370 | 0.817954 | 2.522396e-52 | -8.615850e-47 |
| Msa0784220 | Msa1464370 | 0.855733 | 5.174821e-62 | -8.615850e-47 |
| Msa0790410 | Msa1464370 | 0.809303 | 2.022551e-50 | -8.615850e-47 |
| Msa0794740 | Msa1464370 | 0.817284 | 3.571077e-52 | -8.615850e-47 |
| Msa0816900 | Msa1464370 | 0.806007 | 1.013750e-49 | -8.615850e-47 |
| Msa0124200 | Msa1464370 | 0.862155 | 6.190927e-64 | -8.615850e-47 |
| Msa0128360 | Msa1464370 | 0.827558 | 1.464363e-54 | -8.615850e-47 |
| Msa0137540 | Msa1464370 | 0.818530 | 1.868352e-52 | -8.615850e-47 |
| Msa0140240 | Msa1464370 | 0.807866 | 4.099919e-50 | -8.615850e-47 |
| Msa0140880 | Msa1464370 | 0.829505 | 4.958744e-55 | -8.615850e-47 |
| Msa0168570 | Msa1464370 | 0.882813 | 7.605359e-71 | -8.615850e-47 |
| Msa0186410 | Msa1464370 | 0.829121 | 6.146389e-55 | -8.615850e-47 |
| Msa0194860 | Msa1464370 | 0.807375 | 5.212834e-50 | -8.615850e-47 |
| Msa0225480 | Msa1464370 | 0.815372 | 9.560300e-52 | -8.615850e-47 |
| Msa0231190 | Msa1464370 | 0.803069 | 4.156790e-49 | -8.615850e-47 |
| Msa1249310 | Msa1464370 | 0.802779 | 4.771603e-49 | -8.615850e-47 |
| Msa1254620 | Msa1464370 | 0.827512 | 1.501513e-54 | -8.615850e-47 |
| Msa1255890 | Msa1464370 | 0.833495 | 5.161931e-56 | -8.615850e-47 |
| Msa1267040 | Msa1464370 | 0.867831 | 1.023665e-65 | -8.615850e-47 |
| Msa1267170 | Msa1464370 | 0.865010 | 8.049154e-65 | -8.615850e-47 |
| Msa1277720 | Msa1464370 | 0.844069 | 9.496912e-59 | -8.615850e-47 |
| Msa1305830 | Msa1464370 | 0.815516 | 8.882323e-52 | -8.615850e-47 |
| Msa1305850 | Msa1464370 | 0.829432 | 5.165616e-55 | -8.615850e-47 |
| Msa1326230 | Msa1464370 | 0.812975 | 3.234913e-51 | -8.615850e-47 |
| Msa1336030 | Msa1464370 | 0.822638 | 2.128049e-53 | -8.615850e-47 |
| Msa0369420 | Msa1464370 | 0.842417 | 2.619603e-58 | -8.615850e-47 |
| Msa0379610 | Msa1464370 | 0.861608 | 9.101364e-64 | -8.615850e-47 |
| Msa0411410 | Msa1464370 | 0.800789 | 1.222126e-48 | -8.615850e-47 |
| Msa0423840 | Msa1464370 | 0.822128 | 2.795378e-53 | -8.615850e-47 |
| Msa0428970 | Msa1464370 | 0.858758 | 6.610904e-63 | -8.615850e-47 |
| Msa0432170 | Msa1464370 | 0.807391 | 5.171328e-50 | -8.615850e-47 |
| Msa0463530 | Msa1464370 | 0.822163 | 2.743235e-53 | -8.615850e-47 |
| Msa0464440 | Msa1464370 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0467310 | Msa1464370 | 0.820077 | 8.296692e-53 | -8.615850e-47 |
| Msa0475450 | Msa1464370 | 0.857712 | 1.354439e-62 | -8.615850e-47 |
| Msa0476690 | Msa1464370 | 0.823607 | 1.264756e-53 | -8.615850e-47 |
| Msa1020940 | Msa1464370 | 0.823025 | 1.729416e-53 | -8.615850e-47 |
| Msa1051960 | Msa1464370 | 0.804200 | 2.421618e-49 | -8.615850e-47 |
| Msa1055200 | Msa1464370 | 0.813050 | 3.114266e-51 | -8.615850e-47 |
| Msa1065430 | Msa1464370 | 0.864228 | 1.414025e-64 | -8.615850e-47 |
| Msa1067140 | Msa1464370 | 0.835768 | 1.384410e-56 | -8.615850e-47 |
| Msa1095790 | Msa1464370 | 0.869059 | 4.110225e-66 | -8.615850e-47 |
| Msa0240650 | Msa1464370 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0241350 | Msa1464370 | 0.824744 | 6.837281e-54 | -8.615850e-47 |
| Msa0268110 | Msa1464370 | 0.841822 | 3.762899e-58 | -8.615850e-47 |
| Msa0279390 | Msa1464370 | 0.813323 | 2.712517e-51 | -8.615850e-47 |
| Msa0280150 | Msa1464370 | 0.804227 | 2.389668e-49 | -8.615850e-47 |
| Msa0302890 | Msa1464370 | 0.844489 | 7.325687e-59 | -8.615850e-47 |
| Msa0304100 | Msa1464370 | 0.822001 | 2.991735e-53 | -8.615850e-47 |
| Msa0305330 | Msa1464370 | 0.852039 | 5.994237e-61 | -8.615850e-47 |
| Msa0307860 | Msa1464370 | 0.809537 | 1.801470e-50 | -8.615850e-47 |
| Msa0318880 | Msa1464370 | 0.814911 | 1.210162e-51 | -8.615850e-47 |
| Msa0362890 | Msa1464370 | 0.811859 | 5.671565e-51 | -8.615850e-47 |
| Msa1111290 | Msa1464370 | 0.807996 | 3.847508e-50 | -8.615850e-47 |
| Msa1114780 | Msa1464370 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa1119990 | Msa1464370 | 0.806238 | 9.062150e-50 | -8.615850e-47 |
| Msa1143710 | Msa1464370 | 0.822872 | 1.876942e-53 | -8.615850e-47 |
| Msa1161810 | Msa1464370 | 0.861071 | 1.327578e-63 | -8.615850e-47 |
| Msa1168340 | Msa1464370 | 0.814107 | 1.823438e-51 | -8.615850e-47 |
| Msa1176550 | Msa1464370 | 0.818731 | 1.681669e-52 | -8.615850e-47 |
| Msa1200260 | Msa1464370 | 0.804017 | 2.643009e-49 | -8.615850e-47 |
| Msa1201640 | Msa1464370 | 0.803078 | 4.139376e-49 | -8.615850e-47 |
| Msa1217670 | Msa1464370 | 0.854118 | 1.522433e-61 | -8.615850e-47 |
| Msa1219830 | Msa1464370 | 0.824783 | 6.693894e-54 | -8.615850e-47 |
| Msa0544730 | Msa1464370 | 0.808929 | 2.432366e-50 | -8.615850e-47 |
| Msa0553200 | Msa1464370 | 0.824718 | 6.936135e-54 | -8.615850e-47 |
| Msa0561410 | Msa1464370 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0572750 | Msa1464370 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0586450 | Msa1464370 | 0.867567 | 1.244495e-65 | -8.615850e-47 |
| Msa0881350 | Msa1464370 | 0.815845 | 7.503855e-52 | -8.615850e-47 |
| Msa0969330 | Msa1464370 | 0.807978 | 3.880893e-50 | -8.615850e-47 |
| Msa0969780 | Msa1464370 | 0.849431 | 3.248858e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464370 | MtrunA17_Chr4g0005831 | 97.679 | 517 | 9 | 1 | 1 | 517 | 1 | 514 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464370 | AT3G09090.1 | 64.648 | 512 | 155 | 5 | 33 | 518 | 26 | 537 | 0.0 | 608 |
| Msa1464370 | AT3G09090.2 | 64.648 | 512 | 155 | 5 | 33 | 518 | 26 | 537 | 0.0 | 608 |
| Msa1464370 | AT3G09090.3 | 64.648 | 512 | 155 | 5 | 33 | 518 | 26 | 537 | 0.0 | 607 |
Find 130 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGAGTAACTACATTTC+TGG | 0.170344 | tig0044067:-2693 | Msa1464370:intergenic |
| GGGTTTCATAAGAACAAATT+AGG | 0.174847 | tig0044067:-2538 | Msa1464370:intergenic |
| GTTTGGATAAACGGCTTATT+TGG | 0.180460 | tig0044067:-2257 | Msa1464370:intergenic |
| TCGTCCTCTTTCTTTGATTC+TGG | 0.190613 | tig0044067:+2365 | Msa1464370:five_prime_UTR |
| CCGAAACGTATTATTCTTCT+TGG | 0.202481 | tig0044067:-2637 | Msa1464370:intergenic |
| CAATCTTCAATCTTTCAATT+TGG | 0.207606 | tig0044067:+2503 | Msa1464370:five_prime_UTR |
| TTTCTACTTCAATTCTAGTT+AGG | 0.231201 | tig0044067:+2455 | Msa1464370:five_prime_UTR |
| ATTCTTGTTGGAACTTCTTA+TGG | 0.238062 | tig0044067:+7633 | Msa1464370:CDS |
| ATAAGAACAAATTAGGGATT+TGG | 0.272337 | tig0044067:-2531 | Msa1464370:intergenic |
| GAGCCTGAAAAGAAAATAAA+TGG | 0.273112 | tig0044067:+5371 | Msa1464370:CDS |
| AATTCGCGATAGTAGCTTCT+TGG | 0.273704 | tig0044067:-5024 | Msa1464370:intergenic |
| GAGCCTGAAAAGAAAGTAAA+TGG | 0.282787 | tig0044067:+5464 | Msa1464370:CDS |
| CAAGAAGAATAATACGTTTC+GGG | 0.282960 | tig0044067:+2638 | Msa1464370:CDS |
| CCTTGATTGCTGATATTAAC+AGG | 0.307509 | tig0044067:+2872 | Msa1464370:CDS |
| TTGGTATGTGGGTTTGAATA+AGG | 0.317504 | tig0044067:+4955 | Msa1464370:CDS |
| CTGGAAGATAACAACTTAAA+AGG | 0.334616 | tig0044067:+5602 | Msa1464370:CDS |
| CTTGGATGGTGATGGGTATC+TGG | 0.342824 | tig0044067:+7608 | Msa1464370:CDS |
| CCAGGAGCATATGAAAGAAT+TGG | 0.347380 | tig0044067:+7437 | Msa1464370:CDS |
| AGGGAAGCATGAGAAATTAG+AGG | 0.366054 | tig0044067:+5823 | Msa1464370:CDS |
| GTGAAGCGATGGGTGCTCTT+TGG | 0.369216 | tig0044067:-2403 | Msa1464370:intergenic |
| TTCTACTTCAATTCTAGTTA+GGG | 0.371411 | tig0044067:+2456 | Msa1464370:five_prime_UTR |
| TTAGGGTATGTTTGGATAAA+CGG | 0.375204 | tig0044067:-2266 | Msa1464370:intergenic |
| GGTTTCATAAGAACAAATTA+GGG | 0.375819 | tig0044067:-2537 | Msa1464370:intergenic |
| ATGAACTTCTTCCTTACCTT+TGG | 0.376972 | tig0044067:-5648 | Msa1464370:intergenic |
| ATAAAATAAAATTGAGTGTT+GGG | 0.379310 | tig0044067:+2295 | Msa1464370:five_prime_UTR |
| CCAAGAAGAATAATACGTTT+CGG | 0.380774 | tig0044067:+2637 | Msa1464370:CDS |
| AAATAGCACTTCACCATTGT+AGG | 0.390827 | tig0044067:-4768 | Msa1464370:intergenic |
| TCTTAATACCCTCCTCTGAT+TGG | 0.392334 | tig0044067:-5490 | Msa1464370:intergenic |
| CCTGTTAATATCAGCAATCA+AGG | 0.401995 | tig0044067:-2872 | Msa1464370:intergenic |
| TAGCATTGGGAGGCGGCTGC+TGG | 0.404393 | tig0044067:+5583 | Msa1464370:CDS |
| TGTTAATACTCTCCTCTGAT+TGG | 0.405891 | tig0044067:-5397 | Msa1464370:intergenic |
| TTCTCCAACTGTTGTAGACT+TGG | 0.422387 | tig0044067:+7590 | Msa1464370:CDS |
| TTATGAGTAACTACATTTCT+GGG | 0.425505 | tig0044067:-2692 | Msa1464370:intergenic |
| AGAAAGAGGACGACACCAAT+TGG | 0.429768 | tig0044067:-2355 | Msa1464370:intergenic |
| TAACTAGAATTGAAGTAGAA+AGG | 0.430624 | tig0044067:-2453 | Msa1464370:intergenic |
| TTCAAGGTAGTGAACAAAAG+AGG | 0.437265 | tig0044067:-3348 | Msa1464370:intergenic |
| CCAATTCTTTCATATGCTCC+TGG | 0.441892 | tig0044067:-7437 | Msa1464370:intergenic |
| GGTATCCTCCTCTGCGAAAA+CGG | 0.450234 | tig0044067:-2616 | Msa1464370:intergenic |
| CACTACCTTGAAGTTCTTGA+GGG | 0.452249 | tig0044067:+3359 | Msa1464370:CDS |
| TCAGGATGGGTACGGTCCAC+TGG | 0.455155 | tig0044067:-4980 | Msa1464370:intergenic |
| AACTAGAATTGAAGTAGAAA+GGG | 0.458087 | tig0044067:-2452 | Msa1464370:intergenic |
| GACATTGGGAAATATGTTGC+TGG | 0.458768 | tig0044067:+7468 | Msa1464370:CDS |
| CAGGAGCATATGAAAGAATT+GGG | 0.467533 | tig0044067:+7438 | Msa1464370:CDS |
| AATAAAATAAAATTGAGTGT+TGG | 0.472361 | tig0044067:+2294 | Msa1464370:five_prime_UTR |
| AGTTGGTCATCATGAACATC+AGG | 0.476688 | tig0044067:-4998 | Msa1464370:intergenic |
| GTTTAGAGATGAAGATGCTT+TGG | 0.482215 | tig0044067:+2777 | Msa1464370:intron |
| CTGTGAATTTAGAGCTAAGA+TGG | 0.484697 | tig0044067:+2815 | Msa1464370:CDS |
| CGGTGCCCTCAAGAACTTCA+AGG | 0.486346 | tig0044067:-3364 | Msa1464370:intergenic |
| ATTCTCCTTGTAGAAATGAA+TGG | 0.488587 | tig0044067:+5272 | Msa1464370:intron |
| CAATGATGGCGTAATGGAAA+TGG | 0.491754 | tig0044067:+6014 | Msa1464370:CDS |
| AATTGGGCGATATTGACATT+GGG | 0.493358 | tig0044067:+7454 | Msa1464370:CDS |
| ATCTGTCAGTGCTGGTTCTG+TGG | 0.497253 | tig0044067:+5535 | Msa1464370:CDS |
| CATTGTGGGGTGATGAAGAA+TGG | 0.497821 | tig0044067:+5795 | Msa1464370:CDS |
| CATCTTAGCTCTAAATTCAC+AGG | 0.499015 | tig0044067:-2814 | Msa1464370:intergenic |
| GCAGACAACAAGACTAGCAT+TGG | 0.499136 | tig0044067:+5569 | Msa1464370:CDS |
| GATGATCTAACACATAGAAT+AGG | 0.499933 | tig0044067:-7656 | Msa1464370:intergenic |
| GTAGCAGAGAAGCAGGCTCC+AGG | 0.500066 | tig0044067:-7688 | Msa1464370:intergenic |
| ACCGATGGAGACAAAATGCC+AGG | 0.507801 | tig0044067:+3383 | Msa1464370:CDS |
| GGTGATGAAGAATGGATTGA+AGG | 0.513551 | tig0044067:+5803 | Msa1464370:CDS |
| TAAGCGAGTAGCAGAGAAGC+AGG | 0.515202 | tig0044067:-7695 | Msa1464370:intergenic |
| GGGTATCTGGACATTCTTGT+TGG | 0.523031 | tig0044067:+7621 | Msa1464370:CDS |
| TTTAGAGCTAAGATGGCAAA+CGG | 0.525130 | tig0044067:+2822 | Msa1464370:CDS |
| GATAATTCATCTGTCAGTGC+TGG | 0.526433 | tig0044067:+5527 | Msa1464370:CDS |
| CAAACCAGAATCAAAGAAAG+AGG | 0.526919 | tig0044067:-2369 | Msa1464370:intergenic |
| GAATTGGGCGATATTGACAT+TGG | 0.530810 | tig0044067:+7453 | Msa1464370:CDS |
| TATTGACAATGATGGCGTAA+TGG | 0.532605 | tig0044067:+6008 | Msa1464370:CDS |
| TCACTACCTTGAAGTTCTTG+AGG | 0.536008 | tig0044067:+3358 | Msa1464370:CDS |
| TGGGTAACCGAGTGCATCAT+CGG | 0.536831 | tig0044067:-2673 | Msa1464370:intergenic |
| TAGATCATCATGGTAATGCC+TGG | 0.536858 | tig0044067:+7670 | Msa1464370:CDS |
| TGTGGAAAATGAGGAAGGAC+TGG | 0.538615 | tig0044067:+5679 | Msa1464370:CDS |
| TGGCGTGAGAGAAATAGCTT+TGG | 0.539702 | tig0044067:+4742 | Msa1464370:CDS |
| TGATGGGAAGCTTGACATAG+TGG | 0.541378 | tig0044067:+3322 | Msa1464370:CDS |
| CCATCCAAGTCTACAACAGT+TGG | 0.542560 | tig0044067:-7594 | Msa1464370:intergenic |
| AGAAGTTCATGCTGCAACTG+TGG | 0.544496 | tig0044067:+5661 | Msa1464370:CDS |
| ATTGCAGATATTGACAATGA+TGG | 0.545159 | tig0044067:+6000 | Msa1464370:CDS |
| GAAGTTCTTGAGGGCACCGA+TGG | 0.547844 | tig0044067:+3368 | Msa1464370:CDS |
| GACTAGAATGCACAGTCGAT+TGG | 0.548673 | tig0044067:-4694 | Msa1464370:intergenic |
| TTCTGTTGATGTGGAAGCTG+AGG | 0.550577 | tig0044067:-5315 | Msa1464370:intergenic |
| GATCTGAGTGTGTGAAGCGA+TGG | 0.550747 | tig0044067:-2414 | Msa1464370:intergenic |
| ACAGTCGATTGGTGGAAAGC+AGG | 0.553340 | tig0044067:-4683 | Msa1464370:intergenic |
| TGCTGCAACTGTGGAAAATG+AGG | 0.555327 | tig0044067:+5670 | Msa1464370:CDS |
| TGGTTCTGAATCCAAAGGTA+AGG | 0.557327 | tig0044067:+5637 | Msa1464370:CDS |
| TTATGTTGATGAATCATTGT+GGG | 0.557727 | tig0044067:+5781 | Msa1464370:CDS |
| TAGTAGCTTCTTGGACAAGT+TGG | 0.558204 | tig0044067:-5015 | Msa1464370:intergenic |
| CCAACTGTTGTAGACTTGGA+TGG | 0.558571 | tig0044067:+7594 | Msa1464370:CDS |
| TTCTATGTGTTAGATCATCA+TGG | 0.558711 | tig0044067:+7660 | Msa1464370:CDS |
| CTTGTCTGACATGATATAGC+CGG | 0.560084 | tig0044067:-4900 | Msa1464370:intergenic |
| CATAGTTGTACTCATCAGCC+AGG | 0.561836 | tig0044067:-5748 | Msa1464370:intergenic |
| AGGGTGACTTTCTGTTGATG+TGG | 0.570303 | tig0044067:-5324 | Msa1464370:intergenic |
| ATTATGTTGATGAATCATTG+TGG | 0.571019 | tig0044067:+5780 | Msa1464370:CDS |
| TTGTCTATGTCATATAGAAG+TGG | 0.571149 | tig0044067:-4716 | Msa1464370:intergenic |
| ATCTGAGTGTGTGAAGCGAT+GGG | 0.572297 | tig0044067:-2413 | Msa1464370:intergenic |
| TAGAATGCACAGTCGATTGG+TGG | 0.572725 | tig0044067:-4691 | Msa1464370:intergenic |
| CAGACAACAAGACTAGCATT+GGG | 0.573562 | tig0044067:+5570 | Msa1464370:CDS |
| GTGATGAAGAATGGATTGAA+GGG | 0.577077 | tig0044067:+5804 | Msa1464370:CDS |
| GATGAATTATCAGCAACTGT+TGG | 0.581842 | tig0044067:-5515 | Msa1464370:intergenic |
| TTAAAAGGAGCTGAGCAAGT+TGG | 0.583630 | tig0044067:+5617 | Msa1464370:CDS |
| ATCGCTTCACACACTCAGAT+CGG | 0.584256 | tig0044067:+2416 | Msa1464370:five_prime_UTR |
| CTATATGACATAGACAAAGA+TGG | 0.586706 | tig0044067:+4722 | Msa1464370:CDS |
| TCAAGGTAGTGAACAAAAGA+GGG | 0.591437 | tig0044067:-3347 | Msa1464370:intergenic |
| ATAGCTTTGGCAACCTACAA+TGG | 0.596273 | tig0044067:+4755 | Msa1464370:CDS |
| AGTAAATGGAAGCCAATCAG+AGG | 0.598162 | tig0044067:+5478 | Msa1464370:CDS |
| GTTGTAGACTTGGATGGTGA+TGG | 0.598690 | tig0044067:+7600 | Msa1464370:CDS |
| GGTCATCATGAACATCAGGA+TGG | 0.599779 | tig0044067:-4994 | Msa1464370:intergenic |
| GAGAAGAATATACGTACGCT+CGG | 0.600163 | tig0044067:-7572 | Msa1464370:intergenic |
| CATGAACATCAGGATGGGTA+CGG | 0.601250 | tig0044067:-4988 | Msa1464370:intergenic |
| AAATGGAAGCCAATCAGAGG+AGG | 0.604090 | tig0044067:+5481 | Msa1464370:CDS |
| CTGAGGAATTAACTTCGTGT+CGG | 0.604187 | tig0044067:-5298 | Msa1464370:intergenic |
| TGGACACAAAACAAGTCAAG+TGG | 0.612073 | tig0044067:+7511 | Msa1464370:CDS |
| ATTCCGCAATAGTGATGACC+TGG | 0.612503 | tig0044067:+5730 | Msa1464370:CDS |
| GTCATCATGAACATCAGGAT+GGG | 0.614968 | tig0044067:-4993 | Msa1464370:intergenic |
| ACAAGACTAGCATTGGGAGG+CGG | 0.615861 | tig0044067:+5576 | Msa1464370:CDS |
| CTGTTAATATCAGCAATCAA+GGG | 0.618771 | tig0044067:-2871 | Msa1464370:intergenic |
| CAGCCAGGTCATCACTATTG+CGG | 0.618967 | tig0044067:-5733 | Msa1464370:intergenic |
| GCAACTGTGGAAAATGAGGA+AGG | 0.620753 | tig0044067:+5674 | Msa1464370:CDS |
| TTGTAGACTTGGATGGTGAT+GGG | 0.625613 | tig0044067:+7601 | Msa1464370:CDS |
| AATAAATGGAAGCCAATCAG+AGG | 0.633557 | tig0044067:+5385 | Msa1464370:CDS |
| GGGTTTGAATAAGGATCCAG+TGG | 0.638731 | tig0044067:+4964 | Msa1464370:CDS |
| CAAGTTGGTTCTGAATCCAA+AGG | 0.652708 | tig0044067:+5632 | Msa1464370:CDS |
| GTAGGAGGAACTAACAGGTG+TGG | 0.657581 | tig0044067:-5876 | Msa1464370:intergenic |
| AATGGAAGCCAATCAGAGGA+GGG | 0.664074 | tig0044067:+5482 | Msa1464370:CDS |
| GAAGCCACCGATGATGCACT+CGG | 0.670739 | tig0044067:+2666 | Msa1464370:CDS |
| TGACAGGTATTATGACAACC+AGG | 0.671120 | tig0044067:+7419 | Msa1464370:intron |
| TATGTTGATGAATCATTGTG+GGG | 0.671873 | tig0044067:+5782 | Msa1464370:CDS |
| TATCATGTCAGACAAGCTTG+AGG | 0.681103 | tig0044067:+4907 | Msa1464370:CDS |
| ACAACAAGACTAGCATTGGG+AGG | 0.681724 | tig0044067:+5573 | Msa1464370:CDS |
| GTAACCGAGTGCATCATCGG+TGG | 0.682988 | tig0044067:-2670 | Msa1464370:intergenic |
| ATCCTCCTCTGCGAAAACGG+AGG | 0.685152 | tig0044067:-2613 | Msa1464370:intergenic |
| ATTGGGAAATATGTTGCTGG+TGG | 0.740662 | tig0044067:+7471 | Msa1464370:CDS |
| ACAAGCTTGAGGTCCCACGT+AGG | 0.760693 | tig0044067:+4918 | Msa1464370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAAAATAAAATTAAA+AGG | - | tig0044067:5903-5922 | Msa1464370:intergenic | 0.0% |
| !!! | TTTTATTTTATTTTTGGTTA+GGG | - | tig0044067:2286-2305 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTATTTTTGGTT+AGG | - | tig0044067:2287-2306 | None:intergenic | 10.0% |
| !!! | ACTCAATTTTATTTTATTTT+TGG | - | tig0044067:2292-2311 | None:intergenic | 10.0% |
| !!! | TAATTTTCTCAAATTATTAT+CGG | - | tig0044067:2959-2978 | Msa1464370:intergenic | 10.0% |
| !!! | TTGAAATTTTTAGTAAATAT+TGG | - | tig0044067:3724-3743 | Msa1464370:intergenic | 10.0% |
| !!! | TATTTTTATTAGCATATTTA+GGG | - | tig0044067:4214-4233 | Msa1464370:intergenic | 10.0% |
| !!! | TTAATAATATTTTCTATAAG+AGG | + | tig0044067:6828-6847 | Msa1464370:intron | 10.0% |
| !! | AATAAAATAAAATTGAGTGT+TGG | + | tig0044067:2294-2313 | Msa1464370:five_prime_UTR | 15.0% |
| !! | ATAAAATAAAATTGAGTGTT+GGG | + | tig0044067:2295-2314 | Msa1464370:five_prime_UTR | 15.0% |
| !!! | ATCATTAATACTTTTTTGAA+GGG | - | tig0044067:3131-3150 | Msa1464370:intergenic | 15.0% |
| !!! | AATCATTAATACTTTTTTGA+AGG | - | tig0044067:3132-3151 | Msa1464370:intergenic | 15.0% |
| !! | AAGTATTAATGATTAAGTTA+AGG | + | tig0044067:3138-3157 | Msa1464370:intron | 15.0% |
| !! | AGTATTAATGATTAAGTTAA+GGG | + | tig0044067:3139-3158 | Msa1464370:intron | 15.0% |
| !!! | GTATTTTTATTAGCATATTT+AGG | - | tig0044067:4215-4234 | Msa1464370:intergenic | 15.0% |
| !!! | TACAATGATTTTTCATTTTT+AGG | + | tig0044067:4873-4892 | Msa1464370:intron | 15.0% |
| !!! | ACAATGATTTTTCATTTTTA+GGG | + | tig0044067:4874-4893 | Msa1464370:intron | 15.0% |
| !!! | ATCTAATCTAATTTTATCTT+TGG | + | tig0044067:5243-5262 | Msa1464370:intron | 15.0% |
| !!! | TCTAATCTAATTTTATCTTT+GGG | + | tig0044067:5244-5263 | Msa1464370:intron | 15.0% |
| !!! | AAAATAAAATTAAAAGGTGT+AGG | - | tig0044067:5897-5916 | Msa1464370:intergenic | 15.0% |
| !!! | ATATGATTTTTGACAATTAT+TGG | + | tig0044067:7334-7353 | Msa1464370:intron | 15.0% |
| !!! | AAGAAAAAGAAGAACTTTTT+TGG | - | tig0044067:2571-2590 | Msa1464370:intergenic | 20.0% |
| !!! | TTTAGTTTTGAGTTTTTGAT+TGG | + | tig0044067:2741-2760 | Msa1464370:intron | 20.0% |
| !!! | AAAACAGTGAATTGATTTTA+TGG | - | tig0044067:3028-3047 | Msa1464370:intergenic | 20.0% |
| !!! | AATTCACTGTTTTGAATATA+GGG | + | tig0044067:3035-3054 | Msa1464370:intron | 20.0% |
| !!! | ACATCAATTGTTTTGAAATA+AGG | + | tig0044067:3075-3094 | Msa1464370:intron | 20.0% |
| !!! | CATCAATTGTTTTGAAATAA+GGG | + | tig0044067:3076-3095 | Msa1464370:intron | 20.0% |
| !!! | TGGTATATGTATACATTTTT+AGG | + | tig0044067:3167-3186 | Msa1464370:intron | 20.0% |
| !!! | TTTTTGTTGTAGCTATATTT+TGG | + | tig0044067:3490-3509 | Msa1464370:intron | 20.0% |
| !! | GTTGTGATATATATAAAGAA+GGG | + | tig0044067:4076-4095 | Msa1464370:intron | 20.0% |
| !! | TTGTGATATATATAAAGAAG+GGG | + | tig0044067:4077-4096 | Msa1464370:intron | 20.0% |
| !! | AAATACCAGTTTCTATTAAT+TGG | + | tig0044067:4229-4248 | Msa1464370:intron | 20.0% |
| !!! | TTCTTGTTTTTTTTTTGAGA+GGG | - | tig0044067:4343-4362 | Msa1464370:intergenic | 20.0% |
| !!! | ATTCTTGTTTTTTTTTTGAG+AGG | - | tig0044067:4344-4363 | Msa1464370:intergenic | 20.0% |
| !! | CAAAAAAAAAACAAGAATGA+AGG | + | tig0044067:4346-4365 | Msa1464370:intron | 20.0% |
| !! | TTGTAAATGGAAGAAAAATT+TGG | - | tig0044067:4817-4836 | Msa1464370:intergenic | 20.0% |
| !! | GTGTAGATAATGAAAATATA+AGG | - | tig0044067:5121-5140 | Msa1464370:intergenic | 20.0% |
| !! | AATTTACAGTTTATCAATTC+TGG | + | tig0044067:5920-5939 | Msa1464370:intron | 20.0% |
| !! | AAGTTGAGCTTAAAAAATAT+TGG | + | tig0044067:6334-6353 | Msa1464370:intron | 20.0% |
| !! | ATTAAAAACAGATGAAAGAA+AGG | + | tig0044067:6453-6472 | Msa1464370:intron | 20.0% |
| !!! | TTTTCTTTTTTTGGTTGAAT+TGG | + | tig0044067:6557-6576 | Msa1464370:intron | 20.0% |
| !!! | AGAAATTTTTTTAGAGAACT+GGG | - | tig0044067:6585-6604 | Msa1464370:intergenic | 20.0% |
| !! | GTCTTCAATGAAAAAATAAA+AGG | + | tig0044067:7085-7104 | Msa1464370:intron | 20.0% |
| !! | CTTTAAATAAAATACTTCAC+TGG | - | tig0044067:7197-7216 | Msa1464370:intergenic | 20.0% |
| !! | CATCAAAAAATTTCAAAAAC+AGG | - | tig0044067:7273-7292 | Msa1464370:intergenic | 20.0% |
| !!! | TTGAAATTTTTTGATGCATT+AGG | + | tig0044067:7277-7296 | Msa1464370:intron | 20.0% |
| ! | AACTAGAATTGAAGTAGAAA+GGG | - | tig0044067:2455-2474 | Msa1464370:intergenic | 25.0% |
| ! | TAACTAGAATTGAAGTAGAA+AGG | - | tig0044067:2456-2475 | Msa1464370:intergenic | 25.0% |
| !! | TTTCTACTTCAATTCTAGTT+AGG | + | tig0044067:2455-2474 | Msa1464370:five_prime_UTR | 25.0% |
| !! | TTCTACTTCAATTCTAGTTA+GGG | + | tig0044067:2456-2475 | Msa1464370:five_prime_UTR | 25.0% |
| ! | CAATCTTCAATCTTTCAATT+TGG | + | tig0044067:2503-2522 | Msa1464370:five_prime_UTR | 25.0% |
| ! | ATAAGAACAAATTAGGGATT+TGG | - | tig0044067:2534-2553 | Msa1464370:intergenic | 25.0% |
| ! | GGTTTCATAAGAACAAATTA+GGG | - | tig0044067:2540-2559 | Msa1464370:intergenic | 25.0% |
| !!! | AGAACTTTTTTGGATGAAAA+GGG | - | tig0044067:2561-2580 | Msa1464370:intergenic | 25.0% |
| !!! | AAGAACTTTTTTGGATGAAA+AGG | - | tig0044067:2562-2581 | Msa1464370:intergenic | 25.0% |
| ! | TTATGAGTAACTACATTTCT+GGG | - | tig0044067:2695-2714 | Msa1464370:intergenic | 25.0% |
| ! | ATTATGAGTAACTACATTTC+TGG | - | tig0044067:2696-2715 | Msa1464370:intergenic | 25.0% |
| ! | TTGTGTATTTGTTTGTCTAA+TGG | + | tig0044067:2911-2930 | Msa1464370:intron | 25.0% |
| !!! | CAATTCACTGTTTTGAATAT+AGG | + | tig0044067:3034-3053 | Msa1464370:intron | 25.0% |
| !!! | TGATTAAGTTAAGGGTATTT+TGG | + | tig0044067:3147-3166 | Msa1464370:intron | 25.0% |
| !!! | TTCTTTTCTTTGGTAGTTTA+AGG | - | tig0044067:3222-3241 | Msa1464370:intergenic | 25.0% |
| ! | TACCAAAGAAAAGAAATGTA+GGG | + | tig0044067:3227-3246 | Msa1464370:intron | 25.0% |
| !!! | AAATCACTGCAATTTTGTTT+TGG | + | tig0044067:3296-3315 | Msa1464370:intron | 25.0% |
| ! | TAGATTAAGACAGAATTTAG+AGG | + | tig0044067:3563-3582 | Msa1464370:intron | 25.0% |
| ! | AGATTAAGACAGAATTTAGA+GGG | + | tig0044067:3564-3583 | Msa1464370:intron | 25.0% |
| !!! | TGTTTTTTGTTTTTCACACA+TGG | + | tig0044067:3863-3882 | Msa1464370:intron | 25.0% |
| !!! | GTTTTTTGTTTTTCACACAT+GGG | + | tig0044067:3864-3883 | Msa1464370:intron | 25.0% |
| ! | TGATGTAGATAAAGTCATAA+AGG | + | tig0044067:4048-4067 | Msa1464370:intron | 25.0% |
| ! | GATGTAGATAAAGTCATAAA+GGG | + | tig0044067:4049-4068 | Msa1464370:intron | 25.0% |
| ! | GGTTGTGATATATATAAAGA+AGG | + | tig0044067:4075-4094 | Msa1464370:intron | 25.0% |
| ! | TGATACCAATTAATAGAAAC+TGG | - | tig0044067:4237-4256 | Msa1464370:intergenic | 25.0% |
| !!! | TTTTTTTTTTGAGAGGGAAA+AGG | - | tig0044067:4337-4356 | Msa1464370:intergenic | 25.0% |
| !!! | AACTTATCTATAGTTCTGAA+TGG | + | tig0044067:4468-4487 | Msa1464370:intron | 25.0% |
| ! | GATGTTATATTGTTACGAAA+GGG | + | tig0044067:4509-4528 | Msa1464370:intron | 25.0% |
| ! | CATTAAAAACCCATTTACAT+TGG | - | tig0044067:4549-4568 | Msa1464370:intergenic | 25.0% |
| ! | ATTCAAATCATTCTTCTTCT+TGG | + | tig0044067:4647-4666 | Msa1464370:intron | 25.0% |
| !!! | ATTCTTCTTCTTGGTTTTTT+AGG | + | tig0044067:4656-4675 | Msa1464370:intron | 25.0% |
| !! | AGCAATGGATAATTTGTAAA+TGG | - | tig0044067:4830-4849 | Msa1464370:intergenic | 25.0% |
| !!! | TTTTTCATTTTTAGGGTTTC+CGG | + | tig0044067:4881-4900 | Msa1464370:intron | 25.0% |
| ! | ATTGTTGGATATAAGCATAT+AGG | + | tig0044067:5087-5106 | Msa1464370:intron | 25.0% |
| !! | AATAAAACAGCTTTTAACAG+AGG | + | tig0044067:5141-5160 | Msa1464370:intron | 25.0% |
| !!! | CTTCCATTTATTTTCTTTTC+AGG | - | tig0044067:5377-5396 | Msa1464370:intergenic | 25.0% |
| !!! | TAGACACATTTTTTGTATCA+GGG | - | tig0044067:5439-5458 | Msa1464370:intergenic | 25.0% |
| !!! | TTAGACACATTTTTTGTATC+AGG | - | tig0044067:5440-5459 | Msa1464370:intergenic | 25.0% |
| !! | ATTATGTTGATGAATCATTG+TGG | + | tig0044067:5780-5799 | Msa1464370:CDS | 25.0% |
| !! | TTATGTTGATGAATCATTGT+GGG | + | tig0044067:5781-5800 | Msa1464370:CDS | 25.0% |
| !! | ATAAAATTAAAAGGTGTAGG+AGG | - | tig0044067:5894-5913 | Msa1464370:intergenic | 25.0% |
| ! | ATAGTCATAGTTATGTGAAT+AGG | + | tig0044067:6151-6170 | Msa1464370:intron | 25.0% |
| ! | ATAATGAACCCAACAAAAAT+AGG | + | tig0044067:6232-6251 | Msa1464370:intron | 25.0% |
| !!! | TCCTATATCCTATTTTTGTT+GGG | - | tig0044067:6243-6262 | Msa1464370:intergenic | 25.0% |
| !!! | TTCCTATATCCTATTTTTGT+TGG | - | tig0044067:6244-6263 | Msa1464370:intergenic | 25.0% |
| ! | TAATTACTTCAAACGAAACA+AGG | + | tig0044067:6274-6293 | Msa1464370:intron | 25.0% |
| ! | TTTAAGCTCAACTTGAATAT+TGG | - | tig0044067:6328-6347 | Msa1464370:intergenic | 25.0% |
| !!! | CAGAAATTTTTTTAGAGAAC+TGG | - | tig0044067:6586-6605 | Msa1464370:intergenic | 25.0% |
| ! | ATTGCAATTAATAGAAGGAA+TGG | - | tig0044067:6897-6916 | Msa1464370:intergenic | 25.0% |
| ! | GTTTGATTGCAATTAATAGA+AGG | - | tig0044067:6902-6921 | Msa1464370:intergenic | 25.0% |
| ! | AATCCTTTGTGTAAAAGATT+GGG | - | tig0044067:6929-6948 | Msa1464370:intergenic | 25.0% |
| !!! | TTATTTTTTCATTGAAGACC+AGG | - | tig0044067:7084-7103 | Msa1464370:intergenic | 25.0% |
| ! | TCATCTTTATACTTTGAATC+TGG | + | tig0044067:7231-7250 | Msa1464370:intron | 25.0% |
| ! | ATGAGTATTTGTCAATTTAG+TGG | + | tig0044067:7369-7388 | Msa1464370:intron | 25.0% |
| !!! | TGGTATTGTTGTTTTTAATC+TGG | + | tig0044067:7491-7510 | Msa1464370:CDS | 25.0% |
| TTAGGGTATGTTTGGATAAA+CGG | - | tig0044067:2269-2288 | None:intergenic | 30.0% | |
| !!! | ATTTTTGGTTAGGGTATGTT+TGG | - | tig0044067:2277-2296 | None:intergenic | 30.0% |
| GGGTTTCATAAGAACAAATT+AGG | - | tig0044067:2541-2560 | Msa1464370:intergenic | 30.0% | |
| CCAAGAAGAATAATACGTTT+CGG | + | tig0044067:2637-2656 | Msa1464370:CDS | 30.0% | |
| CAAGAAGAATAATACGTTTC+GGG | + | tig0044067:2638-2657 | Msa1464370:CDS | 30.0% | |
| CTGTTAATATCAGCAATCAA+GGG | - | tig0044067:2874-2893 | Msa1464370:intergenic | 30.0% | |
| !!! | TTTTTTGAAGGGTTTTGAAG+GGG | - | tig0044067:3120-3139 | Msa1464370:intergenic | 30.0% |
| !!! | CTTTTTTGAAGGGTTTTGAA+GGG | - | tig0044067:3121-3140 | Msa1464370:intergenic | 30.0% |
| !!! | ACTTTTTTGAAGGGTTTTGA+AGG | - | tig0044067:3122-3141 | Msa1464370:intergenic | 30.0% |
| CTACCAAAGAAAAGAAATGT+AGG | + | tig0044067:3226-3245 | Msa1464370:intron | 30.0% | |
| !!! | AATTTTGTTTTGGCAGTGAT+GGG | + | tig0044067:3306-3325 | Msa1464370:intron | 30.0% |
| ACAAAAATATCATCAGGACA+AGG | - | tig0044067:3477-3496 | Msa1464370:intergenic | 30.0% | |
| GCTACAACAAAAATATCATC+AGG | - | tig0044067:3483-3502 | Msa1464370:intergenic | 30.0% | |
| AAGAACACTAAGTTACTAAC+TGG | + | tig0044067:3618-3637 | Msa1464370:intron | 30.0% | |
| GATACTAGTCATGTAAAGTT+TGG | + | tig0044067:3970-3989 | Msa1464370:intron | 30.0% | |
| ! | TCATGTAAAGTTTGGCTTAA+AGG | + | tig0044067:3978-3997 | Msa1464370:intron | 30.0% |
| AGATAAAGTCATAAAGGGTT+AGG | + | tig0044067:4054-4073 | Msa1464370:intron | 30.0% | |
| GATATATATAAAGAAGGGGA+AGG | + | tig0044067:4081-4100 | Msa1464370:intron | 30.0% | |
| ATTAATTGGTATCAGATCTC+TGG | + | tig0044067:4243-4262 | Msa1464370:intron | 30.0% | |
| TTCTTGTTGAATATGAACAG+CGG | - | tig0044067:4308-4327 | Msa1464370:intergenic | 30.0% | |
| TCTCCAAGAATGATAAGAAT+GGG | - | tig0044067:4374-4393 | Msa1464370:intergenic | 30.0% | |
| TTCTCCAAGAATGATAAGAA+TGG | - | tig0044067:4375-4394 | Msa1464370:intergenic | 30.0% | |
| TTCTTATCATTCTTGGAGAA+TGG | + | tig0044067:4375-4394 | Msa1464370:intron | 30.0% | |
| CTAAAAATCCCAATCTTTGA+CGG | + | tig0044067:4439-4458 | Msa1464370:intron | 30.0% | |
| GGATGTTATATTGTTACGAA+AGG | + | tig0044067:4508-4527 | Msa1464370:intron | 30.0% | |
| TTGTCTATGTCATATAGAAG+TGG | - | tig0044067:4719-4738 | Msa1464370:intergenic | 30.0% | |
| CTATATGACATAGACAAAGA+TGG | + | tig0044067:4722-4741 | Msa1464370:CDS | 30.0% | |
| ACAAATTATCCATTGCTTTG+AGG | + | tig0044067:4833-4852 | Msa1464370:intron | 30.0% | |
| AATAAAACACCTCAAAGCAA+TGG | - | tig0044067:4845-4864 | Msa1464370:intergenic | 30.0% | |
| !!! | TGCTTTGAGGTGTTTTATTA+AGG | + | tig0044067:4846-4865 | Msa1464370:intron | 30.0% |
| !! | GTAGGAAAGTGCTTAAAAAT+TGG | + | tig0044067:4936-4955 | Msa1464370:CDS | 30.0% |
| AGTGCTTAAAAATTGGTATG+TGG | + | tig0044067:4943-4962 | Msa1464370:CDS | 30.0% | |
| GTGCTTAAAAATTGGTATGT+GGG | + | tig0044067:4944-4963 | Msa1464370:CDS | 30.0% | |
| CTTATCGCTTAGATAATTGT+TGG | + | tig0044067:5072-5091 | Msa1464370:intron | 30.0% | |
| ATTCTCCTTGTAGAAATGAA+TGG | + | tig0044067:5272-5291 | Msa1464370:intron | 30.0% | |
| !! | TTTATTTTCTTTTCAGGCTC+TGG | - | tig0044067:5371-5390 | Msa1464370:intergenic | 30.0% |
| GAGCCTGAAAAGAAAATAAA+TGG | + | tig0044067:5371-5390 | Msa1464370:CDS | 30.0% | |
| ! | CTTCCATTTACTTTCTTTTC+AGG | - | tig0044067:5470-5489 | Msa1464370:intergenic | 30.0% |
| CTGGAAGATAACAACTTAAA+AGG | + | tig0044067:5602-5621 | Msa1464370:CDS | 30.0% | |
| ! | TATGTTGATGAATCATTGTG+GGG | + | tig0044067:5782-5801 | Msa1464370:CDS | 30.0% |
| ! | GACTTGTTTATACTTTCTCT+CGG | - | tig0044067:5958-5977 | Msa1464370:intergenic | 30.0% |
| ATTGCAGATATTGACAATGA+TGG | + | tig0044067:6000-6019 | Msa1464370:CDS | 30.0% | |
| TATCATAACAACGTTGTGAT+TGG | + | tig0044067:6123-6142 | Msa1464370:intron | 30.0% | |
| TCATAGTTATGTGAATAGGA+TGG | + | tig0044067:6155-6174 | Msa1464370:intron | 30.0% | |
| TTTGTTGGGTTCATTATGAT+AGG | - | tig0044067:6229-6248 | Msa1464370:intergenic | 30.0% | |
| ACCCAACAAAAATAGGATAT+AGG | + | tig0044067:6239-6258 | Msa1464370:intron | 30.0% | |
| TCTATCAGAGTGAAATTGTA+GGG | - | tig0044067:6480-6499 | Msa1464370:intergenic | 30.0% | |
| CTCTGATAGAGAAAGAAATT+TGG | + | tig0044067:6490-6509 | Msa1464370:intron | 30.0% | |
| ! | GGACTGAGTTTTTCTTTTTT+TGG | + | tig0044067:6548-6567 | Msa1464370:intron | 30.0% |
| AATATGTATACAGCTGCAAA+GGG | - | tig0044067:6613-6632 | Msa1464370:intergenic | 30.0% | |
| TTCATCTTGCAGATAAGTAT+TGG | - | tig0044067:6734-6753 | Msa1464370:intergenic | 30.0% | |
| ATAGAAGGAATGGTAATTAC+TGG | - | tig0044067:6887-6906 | Msa1464370:intergenic | 30.0% | |
| CAATCCTTTGTGTAAAAGAT+TGG | - | tig0044067:6930-6949 | Msa1464370:intergenic | 30.0% | |
| ! | CAATCTTTTACACAAAGGAT+TGG | + | tig0044067:6928-6947 | Msa1464370:intron | 30.0% |
| AAGATTGAATGCTCTATTCT+TGG | + | tig0044067:7111-7130 | Msa1464370:intron | 30.0% | |
| AGATTGAATGCTCTATTCTT+GGG | + | tig0044067:7112-7131 | Msa1464370:intron | 30.0% | |
| TCCATAAATGACTAGAACAT+TGG | + | tig0044067:7140-7159 | Msa1464370:intron | 30.0% | |
| ACCAATGTTCTAGTCATTTA+TGG | - | tig0044067:7144-7163 | Msa1464370:intergenic | 30.0% | |
| GAGATTTCAAAATTGTTGAG+AGG | + | tig0044067:7164-7183 | Msa1464370:intron | 30.0% | |
| TATTTGTCAATTTAGTGGTC+TGG | + | tig0044067:7374-7393 | Msa1464370:intron | 30.0% | |
| ATTCTTGTTGGAACTTCTTA+TGG | + | tig0044067:7633-7652 | Msa1464370:CDS | 30.0% | |
| GATGATCTAACACATAGAAT+AGG | - | tig0044067:7659-7678 | Msa1464370:intergenic | 30.0% | |
| TTCTATGTGTTAGATCATCA+TGG | + | tig0044067:7660-7679 | Msa1464370:CDS | 30.0% | |
| GTTTGGATAAACGGCTTATT+TGG | - | tig0044067:2260-2279 | None:intergenic | 35.0% | |
| !! | GACAATTTTGAGAGTCCAAT+TGG | + | tig0044067:2340-2359 | Msa1464370:five_prime_UTR | 35.0% |
| CAAACCAGAATCAAAGAAAG+AGG | - | tig0044067:2372-2391 | Msa1464370:intergenic | 35.0% | |
| CCGAAACGTATTATTCTTCT+TGG | - | tig0044067:2640-2659 | Msa1464370:intergenic | 35.0% | |
| GTTTAGAGATGAAGATGCTT+TGG | + | tig0044067:2777-2796 | Msa1464370:intron | 35.0% | |
| !! | CATCTTAGCTCTAAATTCAC+AGG | - | tig0044067:2817-2836 | Msa1464370:intergenic | 35.0% |
| ! | CTGTGAATTTAGAGCTAAGA+TGG | + | tig0044067:2815-2834 | Msa1464370:CDS | 35.0% |
| ! | TTTAGAGCTAAGATGGCAAA+CGG | + | tig0044067:2822-2841 | Msa1464370:CDS | 35.0% |
| CCTGTTAATATCAGCAATCA+AGG | - | tig0044067:2875-2894 | Msa1464370:intergenic | 35.0% | |
| CCTTGATTGCTGATATTAAC+AGG | + | tig0044067:2872-2891 | Msa1464370:CDS | 35.0% | |
| TTTGTTTGTCTAATGGAGCA+CGG | + | tig0044067:2918-2937 | Msa1464370:intron | 35.0% | |
| !! | CAGTGAATTGATTTTATGGC+AGG | - | tig0044067:3024-3043 | Msa1464370:intergenic | 35.0% |
| !!! | TTTTTGAAGGGTTTTGAAGG+GGG | - | tig0044067:3119-3138 | Msa1464370:intergenic | 35.0% |
| ! | CTCCCTACATTTCTTTTCTT+TGG | - | tig0044067:3232-3251 | Msa1464370:intergenic | 35.0% |
| GAGTAGCTTAATCTTGAGTA+CGG | + | tig0044067:3249-3268 | Msa1464370:intron | 35.0% | |
| !!! | CAATTTTGTTTTGGCAGTGA+TGG | + | tig0044067:3305-3324 | Msa1464370:intron | 35.0% |
| TCAAGGTAGTGAACAAAAGA+GGG | - | tig0044067:3350-3369 | Msa1464370:intergenic | 35.0% | |
| TTCAAGGTAGTGAACAAAAG+AGG | - | tig0044067:3351-3370 | Msa1464370:intergenic | 35.0% | |
| ! | ACATTGACGATCTTTTTACC+TGG | - | tig0044067:3404-3423 | Msa1464370:intergenic | 35.0% |
| ! | TAGCCTTGAGATTAGTTGAA+GGG | + | tig0044067:3537-3556 | Msa1464370:intron | 35.0% |
| AATCCCTTCAACTAATCTCA+AGG | - | tig0044067:3543-3562 | Msa1464370:intergenic | 35.0% | |
| TCGTCTAATTCCTTCTCTTA+TGG | - | tig0044067:3590-3609 | Msa1464370:intergenic | 35.0% | |
| TGAAAATTCAAGCCACACAT+GGG | - | tig0044067:3695-3714 | Msa1464370:intergenic | 35.0% | |
| ATGAAAATTCAAGCCACACA+TGG | - | tig0044067:3696-3715 | Msa1464370:intergenic | 35.0% | |
| TACAAAAGTAGTGCAAACAC+AGG | - | tig0044067:3751-3770 | Msa1464370:intergenic | 35.0% | |
| !! | TTTGCACTACTTTTGTAAGC+TGG | + | tig0044067:3754-3773 | Msa1464370:intron | 35.0% |
| ! | ACTTTTGTAAGCTGGTGTAA+TGG | + | tig0044067:3762-3781 | Msa1464370:intron | 35.0% |
| ! | ATACAACTCTCCTCTTTTAC+TGG | + | tig0044067:3943-3962 | Msa1464370:intron | 35.0% |
| AGTATCTAAGCCAGTAAAAG+AGG | - | tig0044067:3956-3975 | Msa1464370:intergenic | 35.0% | |
| AAGGTATGACATAACACCAT+AGG | + | tig0044067:3997-4016 | Msa1464370:intron | 35.0% | |
| TCATGTCAATTGAGAGAGTT+AGG | + | tig0044067:4120-4139 | Msa1464370:intron | 35.0% | |
| TGCAAGCTGTACTGTTATAA+GGG | + | tig0044067:4180-4199 | Msa1464370:intron | 35.0% | |
| CTTCTGAATTGTCAATATGC+AGG | - | tig0044067:4285-4304 | Msa1464370:intergenic | 35.0% | |
| GATCCCATTCTTATCATTCT+TGG | + | tig0044067:4368-4387 | Msa1464370:intron | 35.0% | |
| TATCATTCTTGGAGAATGGA+AGG | + | tig0044067:4379-4398 | Msa1464370:intron | 35.0% | |
| TTTCTTCTCCGTCAAAGATT+GGG | - | tig0044067:4450-4469 | Msa1464370:intergenic | 35.0% | |
| GTTATATTGTTACGAAAGGG+TGG | + | tig0044067:4512-4531 | Msa1464370:intron | 35.0% | |
| TGATCTATCAGAATAAGGAC+AGG | - | tig0044067:4606-4625 | Msa1464370:intergenic | 35.0% | |
| CCAGATGATCTATCAGAATA+AGG | - | tig0044067:4611-4630 | Msa1464370:intergenic | 35.0% | |
| CCTTATTCTGATAGATCATC+TGG | + | tig0044067:4608-4627 | Msa1464370:intron | 35.0% | |
| !!! | TTCTTCTTGGTTTTTTAGGC+TGG | + | tig0044067:4660-4679 | Msa1464370:intron | 35.0% |
| AAATAGCACTTCACCATTGT+AGG | - | tig0044067:4771-4790 | Msa1464370:intergenic | 35.0% | |
| !!! | ATGGTGAAGTGCTATTTTTC+AGG | + | tig0044067:4774-4793 | Msa1464370:CDS | 35.0% |
| ! | TTTTAAGCACTTTCCTACGT+GGG | - | tig0044067:4934-4953 | Msa1464370:intergenic | 35.0% |
| !! | TTTTTAAGCACTTTCCTACG+TGG | - | tig0044067:4935-4954 | Msa1464370:intergenic | 35.0% |
| TTGGTATGTGGGTTTGAATA+AGG | + | tig0044067:4955-4974 | Msa1464370:CDS | 35.0% | |
| ATAAGCACAGCAGAAACTTA+CGG | - | tig0044067:5057-5076 | Msa1464370:intergenic | 35.0% | |
| AATAAATGGAAGCCAATCAG+AGG | + | tig0044067:5385-5404 | Msa1464370:CDS | 35.0% | |
| TGTTAATACTCTCCTCTGAT+TGG | - | tig0044067:5400-5419 | Msa1464370:intergenic | 35.0% | |
| !! | TTTACTTTCTTTTCAGGCTC+TGG | - | tig0044067:5464-5483 | Msa1464370:intergenic | 35.0% |
| GAGCCTGAAAAGAAAGTAAA+TGG | + | tig0044067:5464-5483 | Msa1464370:CDS | 35.0% | |
| GATGAATTATCAGCAACTGT+TGG | - | tig0044067:5518-5537 | Msa1464370:intergenic | 35.0% | |
| ATGAACTTCTTCCTTACCTT+TGG | - | tig0044067:5651-5670 | Msa1464370:intergenic | 35.0% | |
| !! | GTGATGAAGAATGGATTGAA+GGG | + | tig0044067:5804-5823 | Msa1464370:CDS | 35.0% |
| ! | TATTGACAATGATGGCGTAA+TGG | + | tig0044067:6008-6027 | Msa1464370:CDS | 35.0% |
| TATAAGCATAGACTCACTCT+TGG | - | tig0044067:6065-6084 | Msa1464370:intergenic | 35.0% | |
| GAACCAAAATAGTCAGCTAA+AGG | - | tig0044067:6207-6226 | Msa1464370:intergenic | 35.0% | |
| ! | CATGATCTCTTTTGCAGTAT+CGG | + | tig0044067:6377-6396 | Msa1464370:intron | 35.0% |
| CTCTATCAGAGTGAAATTGT+AGG | - | tig0044067:6481-6500 | Msa1464370:intergenic | 35.0% | |
| ! | TGTTTTCAATCCAATCTGCA+TGG | + | tig0044067:6527-6546 | Msa1464370:intron | 35.0% |
| CAATATGTATACAGCTGCAA+AGG | - | tig0044067:6614-6633 | Msa1464370:intergenic | 35.0% | |
| AAACGATAAAAGTCACATGC+TGG | + | tig0044067:6768-6787 | Msa1464370:intron | 35.0% | |
| AACGATAAAAGTCACATGCT+GGG | + | tig0044067:6769-6788 | Msa1464370:intron | 35.0% | |
| !! | TGTGGCGTTTTAACAGATAA+TGG | + | tig0044067:6803-6822 | Msa1464370:intron | 35.0% |
| TTAGCAATGTTTAAGCTGAC+AGG | + | tig0044067:7403-7422 | Msa1464370:intron | 35.0% | |
| ! | CAGGAGCATATGAAAGAATT+GGG | + | tig0044067:7438-7457 | Msa1464370:CDS | 35.0% |
| AATTGGGCGATATTGACATT+GGG | + | tig0044067:7454-7473 | Msa1464370:CDS | 35.0% | |
| TCGTCCTCTTTCTTTGATTC+TGG | + | tig0044067:2365-2384 | Msa1464370:five_prime_UTR | 40.0% | |
| GAAAACGGAGGATGAAAAAG+TGG | - | tig0044067:2604-2623 | Msa1464370:intergenic | 40.0% | |
| !!! | TTTTGAAGGGTTTTGAAGGG+GGG | - | tig0044067:3118-3137 | Msa1464370:intergenic | 40.0% |
| TCACTACCTTGAAGTTCTTG+AGG | + | tig0044067:3358-3377 | Msa1464370:CDS | 40.0% | |
| CACTACCTTGAAGTTCTTGA+GGG | + | tig0044067:3359-3378 | Msa1464370:CDS | 40.0% | |
| ! | GTAGCCTTGAGATTAGTTGA+AGG | + | tig0044067:3536-3555 | Msa1464370:intron | 40.0% |
| ATTTAGAGGGCCATAAGAGA+AGG | + | tig0044067:3577-3596 | Msa1464370:intron | 40.0% | |
| CTACATAGTGTGTCACACAA+GGG | + | tig0044067:3815-3834 | Msa1464370:intron | 40.0% | |
| CATGGGTAATGACTTAGCAT+CGG | + | tig0044067:3881-3900 | Msa1464370:intron | 40.0% | |
| ! | GTGCCGTCATATTATCGATT+CGG | + | tig0044067:3903-3922 | Msa1464370:intron | 40.0% |
| !! | TGCCGTCATATTATCGATTC+GGG | + | tig0044067:3904-3923 | Msa1464370:intron | 40.0% |
| GTATGACATAACACCATAGG+CGG | + | tig0044067:4000-4019 | Msa1464370:intron | 40.0% | |
| AATGGCTCCTTGTACTGTTA+GGG | + | tig0044067:4023-4042 | Msa1464370:intron | 40.0% | |
| AAGGGGAAGGAATTATAGAG+AGG | + | tig0044067:4094-4113 | Msa1464370:intron | 40.0% | |
| AGGGGAAGGAATTATAGAGA+GGG | + | tig0044067:4095-4114 | Msa1464370:intron | 40.0% | |
| ATTGAGAGAGTTAGGTCTTC+TGG | + | tig0044067:4128-4147 | Msa1464370:intron | 40.0% | |
| AGTTAGGTCTTCTGGACATT+GGG | + | tig0044067:4136-4155 | Msa1464370:intron | 40.0% | |
| TACAGCTTGCAGAACATCAT+GGG | - | tig0044067:4171-4190 | Msa1464370:intergenic | 40.0% | |
| CTGCAAGCTGTACTGTTATA+AGG | + | tig0044067:4179-4198 | Msa1464370:intron | 40.0% | |
| GCAAGCTGTACTGTTATAAG+GGG | + | tig0044067:4181-4200 | Msa1464370:intron | 40.0% | |
| TGGTATCAGATCTCTGGTAT+TGG | + | tig0044067:4249-4268 | Msa1464370:intron | 40.0% | |
| ! | GATCTCTGGTATTGGAGATT+CGG | + | tig0044067:4257-4276 | Msa1464370:intron | 40.0% |
| ! | ATCTCTGGTATTGGAGATTC+GGG | + | tig0044067:4258-4277 | Msa1464370:intron | 40.0% |
| GTTTCTTCTCCGTCAAAGAT+TGG | - | tig0044067:4451-4470 | Msa1464370:intergenic | 40.0% | |
| !! | TAGTTCTGAATGGAAGCCTA+AGG | + | tig0044067:4478-4497 | Msa1464370:intron | 40.0% |
| ATAACATCCTACCCTTCCTT+AGG | - | tig0044067:4497-4516 | Msa1464370:intergenic | 40.0% | |
| TGCAGAGGACCAATGTAAAT+GGG | + | tig0044067:4537-4556 | Msa1464370:intron | 40.0% | |
| !! | ATAGCTTTGGCAACCTACAA+TGG | + | tig0044067:4755-4774 | Msa1464370:CDS | 40.0% |
| CTTGTCTGACATGATATAGC+CGG | - | tig0044067:4903-4922 | Msa1464370:intergenic | 40.0% | |
| TATCATGTCAGACAAGCTTG+AGG | + | tig0044067:4907-4926 | Msa1464370:CDS | 40.0% | |
| GTCATCATGAACATCAGGAT+GGG | - | tig0044067:4996-5015 | Msa1464370:intergenic | 40.0% | |
| AGTTGGTCATCATGAACATC+AGG | - | tig0044067:5001-5020 | Msa1464370:intergenic | 40.0% | |
| TAGTAGCTTCTTGGACAAGT+TGG | - | tig0044067:5018-5037 | Msa1464370:intergenic | 40.0% | |
| AATTCGCGATAGTAGCTTCT+TGG | - | tig0044067:5027-5046 | Msa1464370:intergenic | 40.0% | |
| TAAGCACAGCAGAAACTTAC+GGG | - | tig0044067:5056-5075 | Msa1464370:intergenic | 40.0% | |
| GGCTTCCATTCATTTCTACA+AGG | - | tig0044067:5280-5299 | Msa1464370:intergenic | 40.0% | |
| CTGAGGAATTAACTTCGTGT+CGG | - | tig0044067:5301-5320 | Msa1464370:intergenic | 40.0% | |
| !! | TAGACACGCTTTTTGTGTCA+GGG | - | tig0044067:5346-5365 | Msa1464370:intergenic | 40.0% |
| !! | TTAGACACGCTTTTTGTGTC+AGG | - | tig0044067:5347-5366 | Msa1464370:intergenic | 40.0% |
| AGTAAATGGAAGCCAATCAG+AGG | + | tig0044067:5478-5497 | Msa1464370:CDS | 40.0% | |
| TCTTAATACCCTCCTCTGAT+TGG | - | tig0044067:5493-5512 | Msa1464370:intergenic | 40.0% | |
| GATAATTCATCTGTCAGTGC+TGG | + | tig0044067:5527-5546 | Msa1464370:CDS | 40.0% | |
| CAGACAACAAGACTAGCATT+GGG | + | tig0044067:5570-5589 | Msa1464370:CDS | 40.0% | |
| TTAAAAGGAGCTGAGCAAGT+TGG | + | tig0044067:5617-5636 | Msa1464370:CDS | 40.0% | |
| !! | CAAGTTGGTTCTGAATCCAA+AGG | + | tig0044067:5632-5651 | Msa1464370:CDS | 40.0% |
| !! | TGGTTCTGAATCCAAAGGTA+AGG | + | tig0044067:5637-5656 | Msa1464370:CDS | 40.0% |
| !! | GGTGATGAAGAATGGATTGA+AGG | + | tig0044067:5803-5822 | Msa1464370:CDS | 40.0% |
| ! | AGGGAAGCATGAGAAATTAG+AGG | + | tig0044067:5823-5842 | Msa1464370:CDS | 40.0% |
| !! | GTCGTTTTCTTGTCTTTTCC+AGG | + | tig0044067:5975-5994 | Msa1464370:intron | 40.0% |
| TGTCAATATCTGCAATGACC+TGG | - | tig0044067:5996-6015 | Msa1464370:intergenic | 40.0% | |
| ! | CAATGATGGCGTAATGGAAA+TGG | + | tig0044067:6014-6033 | Msa1464370:CDS | 40.0% |
| ! | GCACCTTTAGCTGACTATTT+TGG | + | tig0044067:6201-6220 | Msa1464370:intron | 40.0% |
| !! | TCTTTTGCAGTATCGGAAAC+AGG | + | tig0044067:6384-6403 | Msa1464370:intron | 40.0% |
| !! | CTTTTGCAGTATCGGAAACA+GGG | + | tig0044067:6385-6404 | Msa1464370:intron | 40.0% |
| TATCGGAAACAGGGTATGTT+GGG | + | tig0044067:6394-6413 | Msa1464370:intron | 40.0% | |
| AAAACTCAGTCCATGCAGAT+TGG | - | tig0044067:6540-6559 | Msa1464370:intergenic | 40.0% | |
| ! | CAGCCCAATCTTTTACACAA+AGG | + | tig0044067:6923-6942 | Msa1464370:intron | 40.0% |
| !! | CTAAGCTCTAGATATACACC+TGG | + | tig0044067:7063-7082 | Msa1464370:intron | 40.0% |
| TTGTCAATTTAGTGGTCTGG+TGG | + | tig0044067:7377-7396 | Msa1464370:intron | 40.0% | |
| TGACAGGTATTATGACAACC+AGG | + | tig0044067:7419-7438 | Msa1464370:intron | 40.0% | |
| CCAATTCTTTCATATGCTCC+TGG | - | tig0044067:7440-7459 | Msa1464370:intergenic | 40.0% | |
| ! | CCAGGAGCATATGAAAGAAT+TGG | + | tig0044067:7437-7456 | Msa1464370:CDS | 40.0% |
| GAATTGGGCGATATTGACAT+TGG | + | tig0044067:7453-7472 | Msa1464370:CDS | 40.0% | |
| GACATTGGGAAATATGTTGC+TGG | + | tig0044067:7468-7487 | Msa1464370:CDS | 40.0% | |
| ATTGGGAAATATGTTGCTGG+TGG | + | tig0044067:7471-7490 | Msa1464370:CDS | 40.0% | |
| TGGACACAAAACAAGTCAAG+TGG | + | tig0044067:7511-7530 | Msa1464370:CDS | 40.0% | |
| GAGAAGAATATACGTACGCT+CGG | - | tig0044067:7575-7594 | Msa1464370:intergenic | 40.0% | |
| TTCTCCAACTGTTGTAGACT+TGG | + | tig0044067:7590-7609 | Msa1464370:CDS | 40.0% | |
| TTGTAGACTTGGATGGTGAT+GGG | + | tig0044067:7601-7620 | Msa1464370:CDS | 40.0% | |
| ! | TAGATCATCATGGTAATGCC+TGG | + | tig0044067:7670-7689 | Msa1464370:CDS | 40.0% |
| AGAAAGAGGACGACACCAAT+TGG | - | tig0044067:2358-2377 | Msa1464370:intergenic | 45.0% | |
| ATCTGAGTGTGTGAAGCGAT+GGG | - | tig0044067:2416-2435 | Msa1464370:intergenic | 45.0% | |
| ATCGCTTCACACACTCAGAT+CGG | + | tig0044067:2416-2435 | Msa1464370:five_prime_UTR | 45.0% | |
| TGATGGGAAGCTTGACATAG+TGG | + | tig0044067:3322-3341 | Msa1464370:CDS | 45.0% | |
| ! | ACCTGGCATTTTGTCTCCAT+CGG | - | tig0044067:3387-3406 | Msa1464370:intergenic | 45.0% |
| TTGATTCTCTGTCCCATGTG+TGG | + | tig0044067:3680-3699 | Msa1464370:intron | 45.0% | |
| GCTACATAGTGTGTCACACA+AGG | + | tig0044067:3814-3833 | Msa1464370:intron | 45.0% | |
| CGCCCGAATCGATAATATGA+CGG | - | tig0044067:3909-3928 | Msa1464370:intergenic | 45.0% | |
| !! | CGTCATATTATCGATTCGGG+CGG | + | tig0044067:3907-3926 | Msa1464370:intron | 45.0% |
| ACATAACACCATAGGCGGAA+TGG | + | tig0044067:4005-4024 | Msa1464370:intron | 45.0% | |
| GAATGGCTCCTTGTACTGTT+AGG | + | tig0044067:4022-4041 | Msa1464370:intron | 45.0% | |
| CATCACACCCTAACAGTACA+AGG | - | tig0044067:4033-4052 | Msa1464370:intergenic | 45.0% | |
| GAGTTAGGTCTTCTGGACAT+TGG | + | tig0044067:4135-4154 | Msa1464370:intron | 45.0% | |
| GTACAGCTTGCAGAACATCA+TGG | - | tig0044067:4172-4191 | Msa1464370:intergenic | 45.0% | |
| CTTGGAGAATGGAAGGAACT+TGG | + | tig0044067:4386-4405 | Msa1464370:intron | 45.0% | |
| TCTGAATGGAAGCCTAAGGA+AGG | + | tig0044067:4482-4501 | Msa1464370:intron | 45.0% | |
| CTGAATGGAAGCCTAAGGAA+GGG | + | tig0044067:4483-4502 | Msa1464370:intron | 45.0% | |
| CTGCAGAGGACCAATGTAAA+TGG | + | tig0044067:4536-4555 | Msa1464370:intron | 45.0% | |
| TAGAATGCACAGTCGATTGG+TGG | - | tig0044067:4694-4713 | Msa1464370:intergenic | 45.0% | |
| GACTAGAATGCACAGTCGAT+TGG | - | tig0044067:4697-4716 | Msa1464370:intergenic | 45.0% | |
| TGGCGTGAGAGAAATAGCTT+TGG | + | tig0044067:4742-4761 | Msa1464370:CDS | 45.0% | |
| GGGTTTGAATAAGGATCCAG+TGG | + | tig0044067:4964-4983 | Msa1464370:CDS | 45.0% | |
| CATGAACATCAGGATGGGTA+CGG | - | tig0044067:4991-5010 | Msa1464370:intergenic | 45.0% | |
| GGTCATCATGAACATCAGGA+TGG | - | tig0044067:4997-5016 | Msa1464370:intergenic | 45.0% | |
| TTCTGTTGATGTGGAAGCTG+AGG | - | tig0044067:5318-5337 | Msa1464370:intergenic | 45.0% | |
| AGGGTGACTTTCTGTTGATG+TGG | - | tig0044067:5327-5346 | Msa1464370:intergenic | 45.0% | |
| AAATGGAAGCCAATCAGAGG+AGG | + | tig0044067:5388-5407 | Msa1464370:CDS | 45.0% | |
| AATGGAAGCCAATCAGAGGA+GGG | + | tig0044067:5389-5408 | Msa1464370:CDS | 45.0% | |
| GCAGACAACAAGACTAGCAT+TGG | + | tig0044067:5569-5588 | Msa1464370:CDS | 45.0% | |
| ! | ACAACAAGACTAGCATTGGG+AGG | + | tig0044067:5573-5592 | Msa1464370:CDS | 45.0% |
| AGAAGTTCATGCTGCAACTG+TGG | + | tig0044067:5661-5680 | Msa1464370:CDS | 45.0% | |
| TGCTGCAACTGTGGAAAATG+AGG | + | tig0044067:5670-5689 | Msa1464370:CDS | 45.0% | |
| GCAACTGTGGAAAATGAGGA+AGG | + | tig0044067:5674-5693 | Msa1464370:CDS | 45.0% | |
| TGTGGAAAATGAGGAAGGAC+TGG | + | tig0044067:5679-5698 | Msa1464370:CDS | 45.0% | |
| ATTCCGCAATAGTGATGACC+TGG | + | tig0044067:5730-5749 | Msa1464370:CDS | 45.0% | |
| CATAGTTGTACTCATCAGCC+AGG | - | tig0044067:5751-5770 | Msa1464370:intergenic | 45.0% | |
| CATTGTGGGGTGATGAAGAA+TGG | + | tig0044067:5795-5814 | Msa1464370:CDS | 45.0% | |
| AAGGTGTAGGAGGAACTAAC+AGG | - | tig0044067:5884-5903 | Msa1464370:intergenic | 45.0% | |
| GTATCGGAAACAGGGTATGT+TGG | + | tig0044067:6393-6412 | Msa1464370:intron | 45.0% | |
| CCATCCAAGTCTACAACAGT+TGG | - | tig0044067:7597-7616 | Msa1464370:intergenic | 45.0% | |
| CCAACTGTTGTAGACTTGGA+TGG | + | tig0044067:7594-7613 | Msa1464370:CDS | 45.0% | |
| GTTGTAGACTTGGATGGTGA+TGG | + | tig0044067:7600-7619 | Msa1464370:CDS | 45.0% | |
| GGGTATCTGGACATTCTTGT+TGG | + | tig0044067:7621-7640 | Msa1464370:CDS | 45.0% | |
| GATCTGAGTGTGTGAAGCGA+TGG | - | tig0044067:2417-2436 | Msa1464370:intergenic | 50.0% | |
| ! | TTCATCCTCCGTTTTCGCAG+AGG | + | tig0044067:2608-2627 | Msa1464370:CDS | 50.0% |
| GGTATCCTCCTCTGCGAAAA+CGG | - | tig0044067:2619-2638 | Msa1464370:intergenic | 50.0% | |
| TGGGTAACCGAGTGCATCAT+CGG | - | tig0044067:2676-2695 | Msa1464370:intergenic | 50.0% | |
| ACCGATGGAGACAAAATGCC+AGG | + | tig0044067:3383-3402 | Msa1464370:CDS | 50.0% | |
| CTGCGTCATTTGCTTCTCTC+TGG | - | tig0044067:3654-3673 | Msa1464370:intergenic | 50.0% | |
| TAGGTCTTCTGGACATTGGG+TGG | + | tig0044067:4139-4158 | Msa1464370:intron | 50.0% | |
| GGAGAATGGAAGGAACTTGG+AGG | + | tig0044067:4389-4408 | Msa1464370:intron | 50.0% | |
| ATGGAAGCCTAAGGAAGGGT+AGG | + | tig0044067:4487-4506 | Msa1464370:intron | 50.0% | |
| ACAGTCGATTGGTGGAAAGC+AGG | - | tig0044067:4686-4705 | Msa1464370:intergenic | 50.0% | |
| TAGCAGCCACGAAGTTTCTG+CGG | + | tig0044067:5176-5195 | Msa1464370:intron | 50.0% | |
| TGTAGACCGCAGAAACTTCG+TGG | - | tig0044067:5185-5204 | Msa1464370:intergenic | 50.0% | |
| !! | ATCTGTCAGTGCTGGTTCTG+TGG | + | tig0044067:5535-5554 | Msa1464370:CDS | 50.0% |
| ! | ACAAGACTAGCATTGGGAGG+CGG | + | tig0044067:5576-5595 | Msa1464370:CDS | 50.0% |
| CAGCCAGGTCATCACTATTG+CGG | - | tig0044067:5736-5755 | Msa1464370:intergenic | 50.0% | |
| GTAGGAGGAACTAACAGGTG+TGG | - | tig0044067:5879-5898 | Msa1464370:intergenic | 50.0% | |
| AAGTCACATGCTGGGAGCTT+TGG | + | tig0044067:6777-6796 | Msa1464370:intron | 50.0% | |
| !! | CTTGGATGGTGATGGGTATC+TGG | + | tig0044067:7608-7627 | Msa1464370:CDS | 50.0% |
| TAAGCGAGTAGCAGAGAAGC+AGG | - | tig0044067:7698-7717 | Msa1464370:intergenic | 50.0% | |
| GTGAAGCGATGGGTGCTCTT+TGG | - | tig0044067:2406-2425 | Msa1464370:intergenic | 55.0% | |
| ! | ATCCTCCGTTTTCGCAGAGG+AGG | + | tig0044067:2611-2630 | Msa1464370:CDS | 55.0% |
| ATCCTCCTCTGCGAAAACGG+AGG | - | tig0044067:2616-2635 | Msa1464370:intergenic | 55.0% | |
| GAAGCCACCGATGATGCACT+CGG | + | tig0044067:2666-2685 | Msa1464370:CDS | 55.0% | |
| GTAACCGAGTGCATCATCGG+TGG | - | tig0044067:2673-2692 | Msa1464370:intergenic | 55.0% | |
| CGGTGCCCTCAAGAACTTCA+AGG | - | tig0044067:3367-3386 | Msa1464370:intergenic | 55.0% | |
| !! | GAAGTTCTTGAGGGCACCGA+TGG | + | tig0044067:3368-3387 | Msa1464370:CDS | 55.0% |
| ACAAGGAGCCATTCCGCCTA+TGG | - | tig0044067:4016-4035 | Msa1464370:intergenic | 55.0% | |
| TACGAAAGGGTGGTCTGCAG+AGG | + | tig0044067:4522-4541 | Msa1464370:intron | 55.0% | |
| ACAAGCTTGAGGTCCCACGT+AGG | + | tig0044067:4918-4937 | Msa1464370:CDS | 55.0% | |
| !! | TGCTGGGAGCTTTGGAGATG+TGG | + | tig0044067:6785-6804 | Msa1464370:intron | 55.0% |
| TCAGGATGGGTACGGTCCAC+TGG | - | tig0044067:4983-5002 | Msa1464370:intergenic | 60.0% | |
| GTAGCAGAGAAGCAGGCTCC+AGG | - | tig0044067:7691-7710 | Msa1464370:intergenic | 60.0% | |
| ! | TAGCATTGGGAGGCGGCTGC+TGG | + | tig0044067:5583-5602 | Msa1464370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044067 | gene | 2250 | 7734 | 2250 | ID=Msa1464370;Name=Msa1464370 |
| tig0044067 | mRNA | 2250 | 7734 | 2250 | ID=Msa1464370-mRNA-1;Parent=Msa1464370;Name=Msa1464370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=302|0.85|0.62|1|1|1|8|0|534 |
| tig0044067 | exon | 2250 | 2700 | 2250 | ID=Msa1464370-mRNA-1:exon:24401;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 2783 | 2893 | 2783 | ID=Msa1464370-mRNA-1:exon:24402;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 3322 | 3404 | 3322 | ID=Msa1464370-mRNA-1:exon:24403;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 4678 | 4795 | 4678 | ID=Msa1464370-mRNA-1:exon:24404;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 4895 | 5055 | 4895 | ID=Msa1464370-mRNA-1:exon:24405;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 5285 | 5883 | 5285 | ID=Msa1464370-mRNA-1:exon:24406;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 5997 | 6067 | 5997 | ID=Msa1464370-mRNA-1:exon:24407;Parent=Msa1464370-mRNA-1 |
| tig0044067 | exon | 7425 | 7734 | 7425 | ID=Msa1464370-mRNA-1:exon:24408;Parent=Msa1464370-mRNA-1 |
| tig0044067 | five_prime_UTR | 2250 | 2551 | 2250 | ID=Msa1464370-mRNA-1:five_prime_utr;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 2552 | 2700 | 2552 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 2783 | 2893 | 2783 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 3322 | 3404 | 3322 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 4678 | 4795 | 4678 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 4895 | 5055 | 4895 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 5285 | 5883 | 5285 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 5997 | 6067 | 5997 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| tig0044067 | CDS | 7425 | 7734 | 7425 | ID=Msa1464370-mRNA-1:cds;Parent=Msa1464370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
