Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069680 | sp|Q8VZ42|SAP11_ARATH | 62.718 | 287 | 97 | 3 | 1 | 286 | 1 | 278 | 2.69e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069680 | B7FKF1 | 97.902 | 286 | 6 | 0 | 1 | 286 | 1 | 286 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0069680 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069680 | Msa0116830 | 0.937814 | 1.876651e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069680 | MtrunA17_Chr1g0173421 | 97.902 | 286 | 6 | 0 | 1 | 286 | 1 | 286 | 0.0 | 585 |
| Msa0069680 | MtrunA17_Chr7g0257681 | 65.157 | 287 | 79 | 2 | 1 | 285 | 1 | 268 | 2.79e-129 | 368 |
| Msa0069680 | MtrunA17_Chr6g0451591 | 48.921 | 139 | 64 | 2 | 2 | 137 | 50 | 184 | 7.16e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069680 | AT2G41835.1 | 62.718 | 287 | 97 | 3 | 1 | 286 | 1 | 278 | 2.73e-128 | 366 |
| Msa0069680 | AT3G57480.2 | 53.310 | 287 | 96 | 2 | 1 | 287 | 1 | 249 | 9.38e-107 | 310 |
| Msa0069680 | AT3G57480.1 | 53.310 | 287 | 96 | 2 | 1 | 287 | 1 | 249 | 9.38e-107 | 310 |
| Msa0069680 | AT3G28210.2 | 41.081 | 185 | 79 | 4 | 2 | 183 | 5 | 162 | 5.60e-38 | 132 |
| Msa0069680 | AT3G28210.1 | 41.081 | 185 | 79 | 4 | 2 | 183 | 5 | 162 | 5.60e-38 | 132 |
| Msa0069680 | AT5G48205.1 | 52.294 | 109 | 24 | 3 | 1 | 106 | 1 | 84 | 2.34e-28 | 108 |
Find 75 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTAGATCTGGAAATTC+TGG | 0.237504 | 1_2:+38627436 | None:intergenic |
| CTATTCATTAGATTCATAAA+AGG | 0.242926 | 1_2:+38624620 | None:intergenic |
| CTTCTTCTTCTCCTTGGAAT+GGG | 0.292210 | 1_2:-38627463 | Msa0069680:exon |
| CAACCTCCTCTTCATCTAAA+TGG | 0.298522 | 1_2:-38624562 | Msa0069680:CDS |
| ATATCTTGTTGCTGTAAAAC+TGG | 0.300732 | 1_2:+38624096 | None:intergenic |
| TGATTCTCCCATGTTATGTT+TGG | 0.324605 | 1_2:+38624839 | None:intergenic |
| AGAAATTGTACTTTCTGAAA+TGG | 0.333254 | 1_2:-38624163 | Msa0069680:three_prime_UTR |
| GTAACTTTCTCATAATTTGA+TGG | 0.361749 | 1_2:+38624797 | None:intergenic |
| TCTTCTTCTTCTCCTTGGAA+TGG | 0.362367 | 1_2:-38627464 | Msa0069680:exon |
| ATCTCTTTGCATCCAGCTGC+AGG | 0.399699 | 1_2:+38624758 | None:intergenic |
| TGCTTCTAATATTCGAGCTT+CGG | 0.402334 | 1_2:-38624519 | Msa0069680:CDS |
| GGTCCTGGACATTTGTGATC+AGG | 0.415571 | 1_2:+38624665 | None:intergenic |
| TTGGATCTTGCTCAGGAACT+AGG | 0.441768 | 1_2:+38624858 | None:intergenic |
| TACAGCAACAAGATATGAAA+AGG | 0.445440 | 1_2:-38624089 | Msa0069680:three_prime_UTR |
| CACTTGCGATCGCTGCTACC+AGG | 0.446006 | 1_2:-38627368 | Msa0069680:intron |
| TATTCATTAGATTCATAAAA+GGG | 0.454261 | 1_2:+38624621 | None:intergenic |
| ATTCGAGCTTCGGCTGAGGC+TGG | 0.454635 | 1_2:-38624509 | Msa0069680:CDS |
| GTTATGTTTGGATCTTGCTC+AGG | 0.458286 | 1_2:+38624851 | None:intergenic |
| ATTTCTGTCTACATTGCTGT+TGG | 0.460149 | 1_2:-38624040 | Msa0069680:three_prime_UTR |
| AGTAGTGATCGAGGAAAACT+TGG | 0.461509 | 1_2:+38624379 | None:intergenic |
| ATATGTCCACTCTGCGCTAA+AGG | 0.469963 | 1_2:-38624887 | Msa0069680:CDS |
| AGAGGAGGTTGAACTTGAGT+TGG | 0.472577 | 1_2:+38624574 | None:intergenic |
| TAGACCATTGTTTGAAGCAT+AGG | 0.474728 | 1_2:-38624694 | Msa0069680:CDS |
| ACTCCAGAATTTCCAGATCT+AGG | 0.478228 | 1_2:-38627439 | Msa0069680:CDS |
| TAACTTTCTCATAATTTGAT+GGG | 0.483060 | 1_2:+38624798 | None:intergenic |
| GTGGTGAAATTAACCAAGCC+TGG | 0.484928 | 1_2:-38624472 | Msa0069680:CDS |
| TCTCAAACACAATTAAATGC+AGG | 0.489246 | 1_2:-38624727 | Msa0069680:CDS |
| TATGCTGGATGAATTTATCC+AGG | 0.493035 | 1_2:+38624134 | None:intergenic |
| CTCAAACACAATTAAATGCA+GGG | 0.496678 | 1_2:-38624726 | Msa0069680:CDS |
| CATTGTTTGAAGCATAGGTT+TGG | 0.498039 | 1_2:-38624689 | Msa0069680:CDS |
| AAAACTTGGCACCGCATTGA+GGG | 0.499599 | 1_2:+38624393 | None:intergenic |
| TTCTTCTTCTCCTTGGAATG+GGG | 0.501793 | 1_2:-38627462 | Msa0069680:exon |
| TGTAGTCCATTTAGATGAAG+AGG | 0.514775 | 1_2:+38624556 | None:intergenic |
| GAAATCAACGAGCTTGCAAT+CGG | 0.515709 | 1_2:+38627399 | None:intergenic |
| CACAGATCCCGTGTCCCTTG+TGG | 0.520415 | 1_2:-38624261 | Msa0069680:CDS |
| TTTCTGAAATGGATAGTGCC+TGG | 0.522098 | 1_2:-38624152 | Msa0069680:three_prime_UTR |
| GCGTGTCCTAAGTGTAGTAA+AGG | 0.526636 | 1_2:-38624287 | Msa0069680:CDS |
| CCCTCTCAACATGCTCCACA+AGG | 0.529390 | 1_2:+38624246 | None:intergenic |
| GTGAATCCTTTACTACACTT+AGG | 0.538962 | 1_2:+38624281 | None:intergenic |
| ACACTTAGGACACGCATCAA+TGG | 0.539521 | 1_2:+38624295 | None:intergenic |
| GGTCCTGATCACAAATGTCC+AGG | 0.548572 | 1_2:-38624668 | Msa0069680:CDS |
| AGAGACAAATGTTTATATGC+TGG | 0.548816 | 1_2:+38624119 | None:intergenic |
| CTCGGAAATTTATATTGCGA+AGG | 0.549126 | 1_2:-38627547 | None:intergenic |
| GAAAACTTGGCACCGCATTG+AGG | 0.550498 | 1_2:+38624392 | None:intergenic |
| TGGTGAAATTAACCAAGCCT+GGG | 0.551641 | 1_2:-38624471 | Msa0069680:CDS |
| AGCAAGATCCAAACATAACA+TGG | 0.557990 | 1_2:-38624847 | Msa0069680:CDS |
| TAATATTCGAGCTTCGGCTG+AGG | 0.559139 | 1_2:-38624513 | Msa0069680:CDS |
| GGGAGAAAGAGCAACGGCAG+TGG | 0.567326 | 1_2:-38624431 | Msa0069680:CDS |
| CAAACCTATGCTTCAAACAA+TGG | 0.573057 | 1_2:+38624690 | None:intergenic |
| AACATGCTCCACAAGGGACA+CGG | 0.573079 | 1_2:+38624253 | None:intergenic |
| GAGCAACGGCAGTGGTCAAG+TGG | 0.573351 | 1_2:-38624423 | Msa0069680:CDS |
| ACCGATGTTTGATATAACTT+CGG | 0.574169 | 1_2:+38624945 | None:intergenic |
| TGGTGGCACTTCTAGAACAT+AGG | 0.575559 | 1_2:-38624219 | Msa0069680:exon |
| TAGCAGCGATCGCAAGTGAA+AGG | 0.598354 | 1_2:+38627373 | None:intergenic |
| ACATGCTCCACAAGGGACAC+GGG | 0.604172 | 1_2:+38624254 | None:intergenic |
| TGGTAACATTCGCAACAGAT+CGG | 0.605303 | 1_2:+38624315 | None:intergenic |
| ATTCTGGAGTCCCCATTCCA+AGG | 0.607926 | 1_2:+38627452 | None:intergenic |
| ATAATTTGATGGGTCGCAGT+CGG | 0.619214 | 1_2:+38624808 | None:intergenic |
| AGTCCATTTAGATGAAGAGG+AGG | 0.622955 | 1_2:+38624559 | None:intergenic |
| TCTCTTTGCATCCAGCTGCA+GGG | 0.624481 | 1_2:+38624759 | None:intergenic |
| GAGCATGTTGAGAGGGAACA+TGG | 0.625868 | 1_2:-38624239 | Msa0069680:CDS |
| CCCTTGTGGAGCATGTTGAG+AGG | 0.626858 | 1_2:-38624247 | Msa0069680:CDS |
| ATCGATTAAAGTAGTGATCG+AGG | 0.631399 | 1_2:+38624370 | None:intergenic |
| CCTTGTGGAGCATGTTGAGA+GGG | 0.637426 | 1_2:-38624246 | Msa0069680:CDS |
| CGGACTCCTTTAGCGCAGAG+TGG | 0.642605 | 1_2:+38624881 | None:intergenic |
| ACCGAAGTTATATCAAACAT+CGG | 0.669814 | 1_2:-38624946 | Msa0069680:CDS |
| GCAAGATCCAAACATAACAT+GGG | 0.676319 | 1_2:-38624846 | Msa0069680:CDS |
| CCTCTCAACATGCTCCACAA+GGG | 0.702395 | 1_2:+38624247 | None:intergenic |
| GGTGAAATTAACCAAGCCTG+GGG | 0.712063 | 1_2:-38624470 | Msa0069680:CDS |
| AATGGTGGGAGAAAGAGCAA+CGG | 0.715605 | 1_2:-38624437 | Msa0069680:CDS |
| GATCTTGCTCAGGAACTAGG+CGG | 0.720155 | 1_2:+38624861 | None:intergenic |
| GCTGGAATGTCAAAGTTGAG+TGG | 0.723894 | 1_2:-38624491 | Msa0069680:CDS |
| GTGAAATTAACCAAGCCTGG+GGG | 0.745657 | 1_2:-38624469 | Msa0069680:CDS |
| GTGGAGCAATGCCCTCAATG+CGG | 0.747142 | 1_2:-38624404 | Msa0069680:CDS |
| CATGTTGAGAGGGAACATGG+TGG | 0.749762 | 1_2:-38624236 | Msa0069680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAATAAAATAAAAAA+TGG | - | chr1_2:38625479-38625498 | Msa0069680:intron | 0.0% |
| !! | CTTATAAAAAAAATATTAGT+GGG | - | chr1_2:38625454-38625473 | Msa0069680:intron | 10.0% |
| !!! | TTCAATTTTATATCTTATTT+TGG | - | chr1_2:38625561-38625580 | Msa0069680:intron | 10.0% |
| !! | ATTCATCTATTAAAAAAATC+AGG | + | chr1_2:38624725-38624744 | None:intergenic | 15.0% |
| !! | AAAATAAAATTGAAAGAGTT+TGG | - | chr1_2:38624806-38624825 | Msa0069680:CDS | 15.0% |
| !!! | AGCAAACTAATATTTTAATT+GGG | - | chr1_2:38625191-38625210 | Msa0069680:intron | 15.0% |
| !!! | CCACTAATATTTTTTTTATA+AGG | + | chr1_2:38625456-38625475 | None:intergenic | 15.0% |
| !! | CCTTATAAAAAAAATATTAG+TGG | - | chr1_2:38625453-38625472 | Msa0069680:intron | 15.0% |
| !! | AAAATAAAAAATGGTTTATG+TGG | - | chr1_2:38625488-38625507 | Msa0069680:intron | 15.0% |
| !! | AAATAAAAAATGGTTTATGT+GGG | - | chr1_2:38625489-38625508 | Msa0069680:intron | 15.0% |
| !!! | AAGTATCTTTTTTTTAAAGA+AGG | + | chr1_2:38625607-38625626 | None:intergenic | 15.0% |
| !! | AACTTTATTGAAATTATGTT+TGG | - | chr1_2:38625638-38625657 | Msa0069680:intron | 15.0% |
| !!! | AATCATATAAGCTATTTTTT+GGG | + | chr1_2:38625731-38625750 | None:intergenic | 15.0% |
| !!! | TAATCATATAAGCTATTTTT+TGG | + | chr1_2:38625732-38625751 | None:intergenic | 15.0% |
| !!! | TGATGATATTTTTATTTTGT+GGG | + | chr1_2:38626162-38626181 | None:intergenic | 15.0% |
| !!! | TTGATGATATTTTTATTTTG+TGG | + | chr1_2:38626163-38626182 | None:intergenic | 15.0% |
| !!! | ACATTGTATTTTTATTTTTG+AGG | - | chr1_2:38626431-38626450 | Msa0069680:intron | 15.0% |
| !! | TATTCATTAGATTCATAAAA+GGG | + | chr1_2:38626957-38626976 | None:intergenic | 15.0% |
| !! | AAGAAAAAGAAAAGAGAAAT+TGG | + | chr1_2:38624243-38624262 | None:intergenic | 20.0% |
| !! | AATTATTAAGAATGCATAGT+GGG | + | chr1_2:38624310-38624329 | None:intergenic | 20.0% |
| !! | AAATTATTAAGAATGCATAG+TGG | + | chr1_2:38624311-38624330 | None:intergenic | 20.0% |
| !!! | CTTTATTTAGATTTTATCTC+AGG | - | chr1_2:38624426-38624445 | Msa0069680:CDS | 20.0% |
| !! | AAGTTAAAGTTAAAGTTGTT+TGG | - | chr1_2:38624551-38624570 | Msa0069680:CDS | 20.0% |
| !!! | ATGTGTTATGTTTCTAATAA+TGG | + | chr1_2:38624840-38624859 | None:intergenic | 20.0% |
| !! | TTCGTTAATATTTCTTTCTT+CGG | - | chr1_2:38624968-38624987 | Msa0069680:intron | 20.0% |
| !! | CAATTGGTATTTGAAAAAAA+AGG | + | chr1_2:38625140-38625159 | None:intergenic | 20.0% |
| !! | AATGTCAATGAAAAAACAAT+TGG | + | chr1_2:38625156-38625175 | None:intergenic | 20.0% |
| !!! | GTTTTTTCATTGACATTTTT+TGG | - | chr1_2:38625159-38625178 | Msa0069680:intron | 20.0% |
| !!! | GAGCAAACTAATATTTTAAT+TGG | - | chr1_2:38625190-38625209 | Msa0069680:intron | 20.0% |
| !! | CTAAATTAATACTAAAGAAC+AGG | - | chr1_2:38625223-38625242 | Msa0069680:intron | 20.0% |
| !!! | ATTTGTTTTTCTATTTGTAC+TGG | - | chr1_2:38625312-38625331 | Msa0069680:intron | 20.0% |
| !!! | ATCATATAAGCTATTTTTTG+GGG | + | chr1_2:38625730-38625749 | None:intergenic | 20.0% |
| !!! | AGTTTTATTATAGCCTTTAT+AGG | - | chr1_2:38626019-38626038 | Msa0069680:intron | 20.0% |
| !! | TAACTTTCTCATAATTTGAT+GGG | + | chr1_2:38626780-38626799 | None:intergenic | 20.0% |
| !!! | AAATTTGTTTCCACTTTTTT+AGG | + | chr1_2:38626934-38626953 | None:intergenic | 20.0% |
| !! | CTATTCATTAGATTCATAAA+AGG | + | chr1_2:38626958-38626977 | None:intergenic | 20.0% |
| !!! | CTTTTATGAATCTAATGAAT+AGG | - | chr1_2:38626956-38626975 | Msa0069680:intron | 20.0% |
| ! | TTAATTAAACAGAAACAACG+TGG | + | chr1_2:38624284-38624303 | None:intergenic | 25.0% |
| !!! | CATCTAATTGAAAGTACTTT+TGG | - | chr1_2:38624339-38624358 | Msa0069680:CDS | 25.0% |
| !! | TTTTGGCCTAGATTTTATTA+GGG | - | chr1_2:38624356-38624375 | Msa0069680:CDS | 25.0% |
| !! | CTAGATTTTATTAGGGTTTT+GGG | - | chr1_2:38624363-38624382 | Msa0069680:CDS | 25.0% |
| !!! | AGTTGTTTTCAACTCATTTT+AGG | - | chr1_2:38624459-38624478 | Msa0069680:CDS | 25.0% |
| !! | TTTTAGACCTCAAAAAAGTA+GGG | + | chr1_2:38624495-38624514 | None:intergenic | 25.0% |
| !! | ACAATTTAAGAGTACAAGAT+GGG | + | chr1_2:38624935-38624954 | None:intergenic | 25.0% |
| !! | TACAATTTAAGAGTACAAGA+TGG | + | chr1_2:38624936-38624955 | None:intergenic | 25.0% |
| ! | TCGTTAATATTTCTTTCTTC+GGG | - | chr1_2:38624969-38624988 | Msa0069680:intron | 25.0% |
| ! | TTGGTATTTGAAAAAAAAGG+AGG | + | chr1_2:38625137-38625156 | None:intergenic | 25.0% |
| ! | AAACAACACATTTGATCAAT+TGG | - | chr1_2:38625284-38625303 | Msa0069680:intron | 25.0% |
| ! | AACAACACATTTGATCAATT+GGG | - | chr1_2:38625285-38625304 | Msa0069680:intron | 25.0% |
| !!! | TTTTTTTTTCCGTATTGGTT+TGG | - | chr1_2:38625336-38625355 | Msa0069680:intron | 25.0% |
| !! | GATCCAAGAAAATAAAGTTT+TGG | - | chr1_2:38625423-38625442 | Msa0069680:intron | 25.0% |
| ! | TAGAATAGAAGTGGAAAATA+AGG | - | chr1_2:38625680-38625699 | Msa0069680:intron | 25.0% |
| ! | TTAAGTGCTTAGTCTATATT+AGG | - | chr1_2:38625749-38625768 | Msa0069680:intron | 25.0% |
| !!! | TATAACTTGTTGCTTTGAAT+TGG | - | chr1_2:38625824-38625843 | Msa0069680:intron | 25.0% |
| ! | TTATTCGATAAGCTGTTATA+GGG | + | chr1_2:38625903-38625922 | None:intergenic | 25.0% |
| ! | TTTATTCGATAAGCTGTTAT+AGG | + | chr1_2:38625904-38625923 | None:intergenic | 25.0% |
| ! | TAATTAATACAAACTAGCGA+AGG | - | chr1_2:38625959-38625978 | Msa0069680:intron | 25.0% |
| ! | TATTATAGCCTTTATAGGAT+AGG | - | chr1_2:38626024-38626043 | Msa0069680:intron | 25.0% |
| ! | TATCATGTGAACAAATTAGA+AGG | - | chr1_2:38626185-38626204 | Msa0069680:intron | 25.0% |
| !! | TCCTAAACGATTTTCATTTT+TGG | - | chr1_2:38626397-38626416 | Msa0069680:intron | 25.0% |
| ! | ACCAAAAATGAAAATCGTTT+AGG | + | chr1_2:38626401-38626420 | None:intergenic | 25.0% |
| ! | GTAACTTTCTCATAATTTGA+TGG | + | chr1_2:38626781-38626800 | None:intergenic | 25.0% |
| ! | AATGAATAGGAGTAGAAAAA+AGG | - | chr1_2:38626969-38626988 | Msa0069680:intron | 25.0% |
| !! | AGAAATTGTACTTTCTGAAA+TGG | - | chr1_2:38627412-38627431 | Msa0069680:CDS | 25.0% |
| ! | CTTTTGGCCTAGATTTTATT+AGG | - | chr1_2:38624355-38624374 | Msa0069680:CDS | 30.0% |
| CCAAAACCCTAATAAAATCT+AGG | + | chr1_2:38624365-38624384 | None:intergenic | 30.0% | |
| ! | CCTAGATTTTATTAGGGTTT+TGG | - | chr1_2:38624362-38624381 | Msa0069680:CDS | 30.0% |
| !!! | TTATTAGGGTTTTGGGTTTA+CGG | - | chr1_2:38624370-38624389 | Msa0069680:CDS | 30.0% |
| AAATCGAAACTACCCTTAAA+TGG | + | chr1_2:38624399-38624418 | None:intergenic | 30.0% | |
| ! | CTTTTAGACCTCAAAAAAGT+AGG | + | chr1_2:38624496-38624515 | None:intergenic | 30.0% |
| !! | TTTGTTTTCCAACAACTTAG+TGG | - | chr1_2:38624877-38624896 | Msa0069680:CDS | 30.0% |
| TGCATATTCGAATGAAGTTA+TGG | - | chr1_2:38625040-38625059 | Msa0069680:intron | 30.0% | |
| ! | TCTTGTTTGATTCGTGAAAA+TGG | - | chr1_2:38625090-38625109 | Msa0069680:intron | 30.0% |
| ACAACACATTTGATCAATTG+GGG | - | chr1_2:38625286-38625305 | Msa0069680:intron | 30.0% | |
| !!! | CTGGTTTTTTTTTTCCGTAT+TGG | - | chr1_2:38625331-38625350 | Msa0069680:intron | 30.0% |
| TTATCATCACCAAACCAATA+CGG | + | chr1_2:38625348-38625367 | None:intergenic | 30.0% | |
| !!! | CTGCCAAAACTTTATTTTCT+TGG | + | chr1_2:38625429-38625448 | None:intergenic | 30.0% |
| !! | CAAGAAAATAAAGTTTTGGC+AGG | - | chr1_2:38625427-38625446 | Msa0069680:intron | 30.0% |
| ! | GAACTTTTGCATAACTTCTT+CGG | + | chr1_2:38625544-38625563 | None:intergenic | 30.0% |
| AATAGAAGTGGAAAATAAGG+AGG | - | chr1_2:38625683-38625702 | Msa0069680:intron | 30.0% | |
| ATAGAAGTGGAAAATAAGGA+GGG | - | chr1_2:38625684-38625703 | Msa0069680:intron | 30.0% | |
| TATAGCTTTCTCAAAAGTCA+CGG | + | chr1_2:38625808-38625827 | None:intergenic | 30.0% | |
| ! | TTGAACAAACCTCTATTTTC+TGG | + | chr1_2:38626234-38626253 | None:intergenic | 30.0% |
| CAAACGGTTTATCAAAACTA+CGG | - | chr1_2:38626296-38626315 | Msa0069680:intron | 30.0% | |
| ! | TGCATGAACTTTAGAAGTTA+AGG | + | chr1_2:38626461-38626480 | None:intergenic | 30.0% |
| !! | TATTTTGCTTGATGACATTC+TGG | - | chr1_2:38626502-38626521 | Msa0069680:intron | 30.0% |
| !! | ATTTTGCTTGATGACATTCT+GGG | - | chr1_2:38626503-38626522 | Msa0069680:intron | 30.0% |
| CCAAACAATACACCTAAAAT+GGG | + | chr1_2:38626606-38626625 | None:intergenic | 30.0% | |
| TCCAAACAATACACCTAAAA+TGG | + | chr1_2:38626607-38626626 | None:intergenic | 30.0% | |
| ACCGAAGTTATATCAAACAT+CGG | - | chr1_2:38626629-38626648 | Msa0069680:intron | 30.0% | |
| ACCGATGTTTGATATAACTT+CGG | + | chr1_2:38626633-38626652 | None:intergenic | 30.0% | |
| TCTCAAACACAATTAAATGC+AGG | - | chr1_2:38626848-38626867 | Msa0069680:intron | 30.0% | |
| CTCAAACACAATTAAATGCA+GGG | - | chr1_2:38626849-38626868 | Msa0069680:intron | 30.0% | |
| CAAAAAGTTCATGAAAGAAG+TGG | - | chr1_2:38627234-38627253 | Msa0069680:intron | 30.0% | |
| AGAGACAAATGTTTATATGC+TGG | + | chr1_2:38627459-38627478 | None:intergenic | 30.0% | |
| ATATCTTGTTGCTGTAAAAC+TGG | + | chr1_2:38627482-38627501 | None:intergenic | 30.0% | |
| TACAGCAACAAGATATGAAA+AGG | - | chr1_2:38627486-38627505 | Msa0069680:five_prime_UTR | 30.0% | |
| ! | GAGTGAGTCAAGAATTTTTG+AGG | - | chr1_2:38624050-38624069 | Msa0069680:three_prime_UTR | 35.0% |
| TTTCCTAGATCTGGAAATTC+TGG | + | chr1_2:38624142-38624161 | None:intergenic | 35.0% | |
| GGTTTACGGTATCCATTTAA+GGG | - | chr1_2:38624384-38624403 | Msa0069680:CDS | 35.0% | |
| CAAATAAGCCACTAAGTTGT+TGG | + | chr1_2:38624888-38624907 | None:intergenic | 35.0% | |
| TAAATATCTGAGCAATCGCA+AGG | - | chr1_2:38625365-38625384 | Msa0069680:intron | 35.0% | |
| ! | TCTACTTCTAAGGAGAAGTA+GGG | + | chr1_2:38625664-38625683 | None:intergenic | 35.0% |
| ! | TTCTACTTCTAAGGAGAAGT+AGG | + | chr1_2:38625665-38625684 | None:intergenic | 35.0% |
| CCACTTCTATTCTACTTCTA+AGG | + | chr1_2:38625674-38625693 | None:intergenic | 35.0% | |
| CCTTAGAAGTAGAATAGAAG+TGG | - | chr1_2:38625671-38625690 | Msa0069680:intron | 35.0% | |
| !!! | AGCCTGTTTGTTTTTTGAGT+GGG | + | chr1_2:38625868-38625887 | None:intergenic | 35.0% |
| CAAAAAACAAACAGGCTCTT+AGG | - | chr1_2:38625871-38625890 | Msa0069680:intron | 35.0% | |
| TAGCCTTTATAGGATAGGAT+AGG | - | chr1_2:38626029-38626048 | Msa0069680:intron | 35.0% | |
| TCTCCTATCCTATCCTATAA+AGG | + | chr1_2:38626035-38626054 | None:intergenic | 35.0% | |
| AATAAACGCGAAGCTTCAAT+TGG | + | chr1_2:38626092-38626111 | None:intergenic | 35.0% | |
| TATAACACTGCAGAGTCAAA+CGG | - | chr1_2:38626280-38626299 | Msa0069680:intron | 35.0% | |
| ACTACGGTATTGCAGAAAAT+AGG | - | chr1_2:38626312-38626331 | Msa0069680:intron | 35.0% | |
| CTACGGTATTGCAGAAAATA+GGG | - | chr1_2:38626313-38626332 | Msa0069680:intron | 35.0% | |
| ! | GTATAAGCCAAACCCATTTT+AGG | - | chr1_2:38626591-38626610 | Msa0069680:intron | 35.0% |
| ! | CAATACACCTAAAATGGGTT+TGG | + | chr1_2:38626601-38626620 | None:intergenic | 35.0% |
| !! | CCCATTTTAGGTGTATTGTT+TGG | - | chr1_2:38626603-38626622 | Msa0069680:intron | 35.0% |
| AGCAAGATCCAAACATAACA+TGG | - | chr1_2:38626728-38626747 | Msa0069680:intron | 35.0% | |
| GCAAGATCCAAACATAACAT+GGG | - | chr1_2:38626729-38626748 | Msa0069680:intron | 35.0% | |
| TGATTCTCCCATGTTATGTT+TGG | + | chr1_2:38626739-38626758 | None:intergenic | 35.0% | |
| ! | TAGACCATTGTTTGAAGCAT+AGG | - | chr1_2:38626881-38626900 | Msa0069680:intron | 35.0% |
| CAAACCTATGCTTCAAACAA+TGG | + | chr1_2:38626888-38626907 | None:intergenic | 35.0% | |
| ! | CATTGTTTGAAGCATAGGTT+TGG | - | chr1_2:38626886-38626905 | Msa0069680:intron | 35.0% |
| TGTAGTCCATTTAGATGAAG+AGG | + | chr1_2:38627022-38627041 | None:intergenic | 35.0% | |
| TGCTTCTAATATTCGAGCTT+CGG | - | chr1_2:38627056-38627075 | Msa0069680:intron | 35.0% | |
| ATCGATTAAAGTAGTGATCG+AGG | + | chr1_2:38627208-38627227 | None:intergenic | 35.0% | |
| GTGAATCCTTTACTACACTT+AGG | + | chr1_2:38627297-38627316 | None:intergenic | 35.0% | |
| TATGCTGGATGAATTTATCC+AGG | + | chr1_2:38627444-38627463 | None:intergenic | 35.0% | |
| ATTTCTGTCTACATTGCTGT+TGG | - | chr1_2:38627535-38627554 | Msa0069680:five_prime_UTR | 35.0% | |
| CTTCTTCTTCTTCTTCTCCT+TGG | - | chr1_2:38624106-38624125 | Msa0069680:three_prime_UTR | 40.0% | |
| TCTTCTTCTTCTCCTTGGAA+TGG | - | chr1_2:38624111-38624130 | Msa0069680:three_prime_UTR | 40.0% | |
| CTTCTTCTTCTCCTTGGAAT+GGG | - | chr1_2:38624112-38624131 | Msa0069680:three_prime_UTR | 40.0% | |
| TTCTTCTTCTCCTTGGAATG+GGG | - | chr1_2:38624113-38624132 | Msa0069680:three_prime_UTR | 40.0% | |
| ACTCCAGAATTTCCAGATCT+AGG | - | chr1_2:38624136-38624155 | Msa0069680:three_prime_UTR | 40.0% | |
| GAAATCAACGAGCTTGCAAT+CGG | + | chr1_2:38624179-38624198 | None:intergenic | 40.0% | |
| GAAATTGGTTAGTACGAACC+TGG | + | chr1_2:38624228-38624247 | None:intergenic | 40.0% | |
| CGTGGACACATAAAAGTTGA+AGG | + | chr1_2:38624266-38624285 | None:intergenic | 40.0% | |
| GGGTTTACGGTATCCATTTA+AGG | - | chr1_2:38624383-38624402 | Msa0069680:CDS | 40.0% | |
| !!! | CGTTTGACCCTACTTTTTTG+AGG | - | chr1_2:38624485-38624504 | Msa0069680:CDS | 40.0% |
| TTTCTTCGGGCATATATCCA+GGG | - | chr1_2:38624982-38625001 | Msa0069680:intron | 40.0% | |
| GCAATGAATATGCAACGAAC+AGG | - | chr1_2:38625401-38625420 | Msa0069680:intron | 40.0% | |
| ATGGTTTATGTGGGAATCGA+TGG | - | chr1_2:38625498-38625517 | Msa0069680:intron | 40.0% | |
| TGGTTTATGTGGGAATCGAT+GGG | - | chr1_2:38625499-38625518 | Msa0069680:intron | 40.0% | |
| ATACCACTTCCAATGCAAGT+TGG | - | chr1_2:38625782-38625801 | Msa0069680:intron | 40.0% | |
| CACCCACTCAAAAAACAAAC+AGG | - | chr1_2:38625863-38625882 | Msa0069680:intron | 40.0% | |
| !!! | GAGCCTGTTTGTTTTTTGAG+TGG | + | chr1_2:38625869-38625888 | None:intergenic | 40.0% |
| AACTAGCGAAGGATGAGAAT+TGG | - | chr1_2:38625970-38625989 | Msa0069680:intron | 40.0% | |
| ! | TGGGTTTGGCTTATACAGTT+AGG | + | chr1_2:38626587-38626606 | None:intergenic | 40.0% |
| GTTATGTTTGGATCTTGCTC+AGG | + | chr1_2:38626727-38626746 | None:intergenic | 40.0% | |
| ! | ATAATTTGATGGGTCGCAGT+CGG | + | chr1_2:38626770-38626789 | None:intergenic | 40.0% |
| ATGTCCAGGACCTAAAAAAG+TGG | - | chr1_2:38626921-38626940 | Msa0069680:intron | 40.0% | |
| !!! | GTTTCCACTTTTTTAGGTCC+TGG | + | chr1_2:38626928-38626947 | None:intergenic | 40.0% |
| CAACCTCCTCTTCATCTAAA+TGG | - | chr1_2:38627013-38627032 | Msa0069680:intron | 40.0% | |
| AGTCCATTTAGATGAAGAGG+AGG | + | chr1_2:38627019-38627038 | None:intergenic | 40.0% | |
| TGGTGAAATTAACCAAGCCT+GGG | - | chr1_2:38627104-38627123 | Msa0069680:intron | 40.0% | |
| AGTAGTGATCGAGGAAAACT+TGG | + | chr1_2:38627199-38627218 | None:intergenic | 40.0% | |
| TGGTAACATTCGCAACAGAT+CGG | + | chr1_2:38627263-38627282 | None:intergenic | 40.0% | |
| !! | TTTCTGAAATGGATAGTGCC+TGG | - | chr1_2:38627423-38627442 | Msa0069680:CDS | 40.0% |
| CTTTCTTCGGGCATATATCC+AGG | - | chr1_2:38624981-38625000 | Msa0069680:intron | 45.0% | |
| TTTATGTGGGAATCGATGGG+TGG | - | chr1_2:38625502-38625521 | Msa0069680:intron | 45.0% | |
| ACTTCTTCGGAGCTACTGTT+GGG | + | chr1_2:38625531-38625550 | None:intergenic | 45.0% | |
| AACTTCTTCGGAGCTACTGT+TGG | + | chr1_2:38625532-38625551 | None:intergenic | 45.0% | |
| ! | GGGCAAACTAAGAGCTTGTT+TGG | + | chr1_2:38625710-38625729 | None:intergenic | 45.0% |
| AGGATAGGATAGGAGAGTGA+TGG | - | chr1_2:38626039-38626058 | Msa0069680:intron | 45.0% | |
| AGGAGAGTGATGGTTAAGAG+TGG | - | chr1_2:38626049-38626068 | Msa0069680:intron | 45.0% | |
| GGAGAGTGATGGTTAAGAGT+GGG | - | chr1_2:38626050-38626069 | Msa0069680:intron | 45.0% | |
| TGATGGTTAAGAGTGGGAAC+TGG | - | chr1_2:38626056-38626075 | Msa0069680:intron | 45.0% | |
| GATGGTTAAGAGTGGGAACT+GGG | - | chr1_2:38626057-38626076 | Msa0069680:intron | 45.0% | |
| GGAATCAGTGTTGTCAATCG+CGG | - | chr1_2:38626206-38626225 | Msa0069680:intron | 45.0% | |
| ATCGCGGATCCAGAAAATAG+AGG | - | chr1_2:38626222-38626241 | Msa0069680:intron | 45.0% | |
| ! | CTTGATGACATTCTGGGTTG+TGG | - | chr1_2:38626509-38626528 | Msa0069680:intron | 45.0% |
| ATATGTCCACTCTGCGCTAA+AGG | - | chr1_2:38626688-38626707 | Msa0069680:intron | 45.0% | |
| TTGGATCTTGCTCAGGAACT+AGG | + | chr1_2:38626720-38626739 | None:intergenic | 45.0% | |
| AGAGGAGGTTGAACTTGAGT+TGG | + | chr1_2:38627004-38627023 | None:intergenic | 45.0% | |
| TAATATTCGAGCTTCGGCTG+AGG | - | chr1_2:38627062-38627081 | Msa0069680:intron | 45.0% | |
| GCTGGAATGTCAAAGTTGAG+TGG | - | chr1_2:38627084-38627103 | Msa0069680:intron | 45.0% | |
| GTGGTGAAATTAACCAAGCC+TGG | - | chr1_2:38627103-38627122 | Msa0069680:intron | 45.0% | |
| GGTGAAATTAACCAAGCCTG+GGG | - | chr1_2:38627105-38627124 | Msa0069680:intron | 45.0% | |
| GTGAAATTAACCAAGCCTGG+GGG | - | chr1_2:38627106-38627125 | Msa0069680:intron | 45.0% | |
| ! | AATGGTGGGAGAAAGAGCAA+CGG | - | chr1_2:38627138-38627157 | Msa0069680:intron | 45.0% |
| AAAACTTGGCACCGCATTGA+GGG | + | chr1_2:38627185-38627204 | None:intergenic | 45.0% | |
| ACACTTAGGACACGCATCAA+TGG | + | chr1_2:38627283-38627302 | None:intergenic | 45.0% | |
| GCGTGTCCTAAGTGTAGTAA+AGG | - | chr1_2:38627288-38627307 | Msa0069680:intron | 45.0% | |
| !! | TGGTGGCACTTCTAGAACAT+AGG | - | chr1_2:38627356-38627375 | Msa0069680:intron | 45.0% |
| !! | ATTCTGGAGTCCCCATTCCA+AGG | + | chr1_2:38624126-38624145 | None:intergenic | 50.0% |
| ! | GCGCAGTGTTTTCCTAGATC+TGG | + | chr1_2:38624151-38624170 | None:intergenic | 50.0% |
| TAGCAGCGATCGCAAGTGAA+AGG | + | chr1_2:38624205-38624224 | None:intergenic | 50.0% | |
| CGGGCATATATCCAGGGATT+TGG | - | chr1_2:38624988-38625007 | Msa0069680:intron | 50.0% | |
| TCAACACGAGACCAAATCCC+TGG | + | chr1_2:38625002-38625021 | None:intergenic | 50.0% | |
| AAGTCACGGCCAACTTGCAT+TGG | + | chr1_2:38625794-38625813 | None:intergenic | 50.0% | |
| GATCTTGCTCAGGAACTAGG+CGG | + | chr1_2:38626717-38626736 | None:intergenic | 50.0% | |
| !! | AAGAAAAAGTGCCCTGCAGC+TGG | - | chr1_2:38626805-38626824 | Msa0069680:intron | 50.0% |
| TCTCTTTGCATCCAGCTGCA+GGG | + | chr1_2:38626819-38626838 | None:intergenic | 50.0% | |
| ATCTCTTTGCATCCAGCTGC+AGG | + | chr1_2:38626820-38626839 | None:intergenic | 50.0% | |
| GGTCCTGATCACAAATGTCC+AGG | - | chr1_2:38626907-38626926 | Msa0069680:intron | 50.0% | |
| GGTCCTGGACATTTGTGATC+AGG | + | chr1_2:38626913-38626932 | None:intergenic | 50.0% | |
| GAAAACTTGGCACCGCATTG+AGG | + | chr1_2:38627186-38627205 | None:intergenic | 50.0% | |
| AACATGCTCCACAAGGGACA+CGG | + | chr1_2:38627325-38627344 | None:intergenic | 50.0% | |
| CCTCTCAACATGCTCCACAA+GGG | + | chr1_2:38627331-38627350 | None:intergenic | 50.0% | |
| CCTTGTGGAGCATGTTGAGA+GGG | - | chr1_2:38627329-38627348 | Msa0069680:intron | 50.0% | |
| GAGCATGTTGAGAGGGAACA+TGG | - | chr1_2:38627336-38627355 | Msa0069680:intron | 50.0% | |
| CATGTTGAGAGGGAACATGG+TGG | - | chr1_2:38627339-38627358 | Msa0069680:intron | 50.0% | |
| CGGCCAACTTGCATTGGAAG+TGG | + | chr1_2:38625788-38625807 | None:intergenic | 55.0% | |
| ACCATTGCTTGATGTCCCCC+AGG | + | chr1_2:38627124-38627143 | None:intergenic | 55.0% | |
| TGGGGGACATCAAGCAATGG+TGG | - | chr1_2:38627123-38627142 | Msa0069680:intron | 55.0% | |
| GGGGGACATCAAGCAATGGT+GGG | - | chr1_2:38627124-38627143 | Msa0069680:intron | 55.0% | |
| GTGGAGCAATGCCCTCAATG+CGG | - | chr1_2:38627171-38627190 | Msa0069680:intron | 55.0% | |
| ACATGCTCCACAAGGGACAC+GGG | + | chr1_2:38627324-38627343 | None:intergenic | 55.0% | |
| CCCTTGTGGAGCATGTTGAG+AGG | - | chr1_2:38627328-38627347 | Msa0069680:intron | 55.0% | |
| CCCTCTCAACATGCTCCACA+AGG | + | chr1_2:38627332-38627351 | None:intergenic | 55.0% | |
| CACTTGCGATCGCTGCTACC+AGG | - | chr1_2:38624207-38624226 | Msa0069680:exon | 60.0% | |
| CGGACTCCTTTAGCGCAGAG+TGG | + | chr1_2:38626697-38626716 | None:intergenic | 60.0% | |
| ATTCGAGCTTCGGCTGAGGC+TGG | - | chr1_2:38627066-38627085 | Msa0069680:intron | 60.0% | |
| TGCTTGATGTCCCCCAGGCT+TGG | + | chr1_2:38627119-38627138 | None:intergenic | 60.0% | |
| GCCTGGGGGACATCAAGCAA+TGG | - | chr1_2:38627120-38627139 | Msa0069680:intron | 60.0% | |
| GGGAGAAAGAGCAACGGCAG+TGG | - | chr1_2:38627144-38627163 | Msa0069680:intron | 60.0% | |
| GAGCAACGGCAGTGGTCAAG+TGG | - | chr1_2:38627152-38627171 | Msa0069680:intron | 60.0% | |
| CACAGATCCCGTGTCCCTTG+TGG | - | chr1_2:38627314-38627333 | Msa0069680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 38624035 | 38627562 | 38624035 | ID=Msa0069680;Name=Msa0069680 |
| chr1_2 | mRNA | 38624035 | 38627562 | 38624035 | ID=Msa0069680-mRNA-1;Parent=Msa0069680;Name=Msa0069680-mRNA-1;_AED=0.31;_eAED=0.31;_QI=95|1|1|1|1|1|2|185|287 |
| chr1_2 | exon | 38624035 | 38624984 | 38624035 | ID=Msa0069680-mRNA-1:exon:12076;Parent=Msa0069680-mRNA-1 |
| chr1_2 | exon | 38627369 | 38627562 | 38627369 | ID=Msa0069680-mRNA-1:exon:12075;Parent=Msa0069680-mRNA-1 |
| chr1_2 | five_prime_UTR | 38627468 | 38627562 | 38627468 | ID=Msa0069680-mRNA-1:five_prime_utr;Parent=Msa0069680-mRNA-1 |
| chr1_2 | CDS | 38627369 | 38627467 | 38627369 | ID=Msa0069680-mRNA-1:cds;Parent=Msa0069680-mRNA-1 |
| chr1_2 | CDS | 38624220 | 38624984 | 38624220 | ID=Msa0069680-mRNA-1:cds;Parent=Msa0069680-mRNA-1 |
| chr1_2 | three_prime_UTR | 38624035 | 38624219 | 38624035 | ID=Msa0069680-mRNA-1:three_prime_utr;Parent=Msa0069680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
