Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070320 | QOV03070.1 | 96.875 | 352 | 4 | 2 | 1 | 346 | 1 | 351 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070320 | sp|Q700W2|SPL9_ARATH | 45.267 | 243 | 102 | 7 | 23 | 253 | 32 | 255 | 6.09e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070320 | A0A7U3NI82 | 96.875 | 352 | 4 | 2 | 1 | 346 | 1 | 351 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0070320 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070320 | Msa0117850 | 0.844335 | 8.056560e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070320 | MtrunA17_Chr1g0175021 | 89.565 | 230 | 23 | 1 | 118 | 346 | 8 | 237 | 6.73e-149 | 419 |
| Msa0070320 | MtrunA17_Chr7g0258471 | 52.226 | 337 | 113 | 11 | 23 | 343 | 91 | 395 | 1.10e-84 | 262 |
| Msa0070320 | MtrunA17_Chr1g0175031 | 85.981 | 107 | 6 | 2 | 17 | 117 | 17 | 120 | 3.73e-50 | 164 |
| Msa0070320 | MtrunA17_Chr3g0122411 | 37.456 | 283 | 132 | 10 | 8 | 270 | 111 | 368 | 9.06e-38 | 140 |
| Msa0070320 | MtrunA17_Chr8g0360361 | 70.667 | 75 | 22 | 0 | 75 | 149 | 69 | 143 | 4.06e-32 | 118 |
| Msa0070320 | MtrunA17_Chr5g0420051 | 66.265 | 83 | 27 | 1 | 76 | 158 | 186 | 267 | 6.20e-32 | 124 |
| Msa0070320 | MtrunA17_Chr7g0231911 | 49.242 | 132 | 50 | 2 | 20 | 144 | 101 | 222 | 1.38e-31 | 120 |
| Msa0070320 | MtrunA17_Chr8g0334671 | 46.309 | 149 | 66 | 3 | 2 | 146 | 124 | 262 | 2.04e-31 | 120 |
| Msa0070320 | MtrunA17_Chr4g0061651 | 74.648 | 71 | 18 | 0 | 76 | 146 | 128 | 198 | 2.40e-31 | 123 |
| Msa0070320 | MtrunA17_Chr2g0308321 | 73.239 | 71 | 19 | 0 | 76 | 146 | 176 | 246 | 1.71e-30 | 121 |
| Msa0070320 | MtrunA17_Chr4g0046991 | 72.464 | 69 | 19 | 0 | 76 | 144 | 78 | 146 | 3.51e-30 | 112 |
| Msa0070320 | MtrunA17_Chr3g0132091 | 46.429 | 140 | 60 | 2 | 18 | 147 | 15 | 149 | 5.68e-30 | 117 |
| Msa0070320 | MtrunA17_Chr8g0386271 | 57.447 | 94 | 33 | 1 | 76 | 169 | 104 | 190 | 1.01e-29 | 117 |
| Msa0070320 | MtrunA17_Chr2g0282521 | 72.464 | 69 | 19 | 0 | 76 | 144 | 69 | 137 | 1.68e-29 | 110 |
| Msa0070320 | MtrunA17_Chr7g0224821 | 56.383 | 94 | 35 | 1 | 76 | 169 | 82 | 169 | 2.12e-28 | 113 |
| Msa0070320 | MtrunA17_Chr2g0302791 | 63.636 | 77 | 28 | 0 | 76 | 152 | 144 | 220 | 1.09e-27 | 114 |
| Msa0070320 | MtrunA17_Chr1g0162871 | 56.863 | 102 | 41 | 1 | 57 | 158 | 93 | 191 | 4.63e-27 | 112 |
| Msa0070320 | MtrunA17_Chr8g0377401 | 46.094 | 128 | 54 | 2 | 16 | 143 | 122 | 234 | 1.02e-26 | 106 |
| Msa0070320 | MtrunA17_Chr7g0270541 | 68.116 | 69 | 22 | 0 | 76 | 144 | 150 | 218 | 3.84e-26 | 109 |
| Msa0070320 | MtrunA17_Chr1g0194121 | 69.565 | 69 | 21 | 0 | 76 | 144 | 152 | 220 | 5.38e-26 | 109 |
| Msa0070320 | MtrunA17_Chr8g0377421 | 62.319 | 69 | 26 | 0 | 76 | 144 | 137 | 205 | 1.99e-23 | 98.6 |
| Msa0070320 | MtrunA17_Chr2g0286661 | 52.113 | 71 | 34 | 0 | 74 | 144 | 106 | 176 | 5.77e-20 | 91.3 |
| Msa0070320 | MtrunA17_Chr2g0317041 | 59.574 | 47 | 19 | 0 | 76 | 122 | 104 | 150 | 1.45e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070320 | AT2G42200.1 | 45.267 | 243 | 102 | 7 | 23 | 253 | 32 | 255 | 6.19e-50 | 171 |
| Msa0070320 | AT3G57920.1 | 43.071 | 267 | 110 | 8 | 23 | 279 | 27 | 261 | 6.96e-49 | 168 |
| Msa0070320 | AT3G15270.1 | 67.105 | 76 | 25 | 0 | 75 | 150 | 67 | 142 | 6.67e-32 | 118 |
| Msa0070320 | AT2G33810.1 | 72.464 | 69 | 19 | 0 | 76 | 144 | 59 | 127 | 2.97e-31 | 115 |
| Msa0070320 | AT1G69170.1 | 74.286 | 70 | 18 | 0 | 76 | 145 | 129 | 198 | 3.67e-30 | 119 |
| Msa0070320 | AT1G53160.3 | 67.105 | 76 | 25 | 0 | 74 | 149 | 57 | 132 | 5.01e-30 | 113 |
| Msa0070320 | AT1G53160.2 | 71.429 | 70 | 20 | 0 | 75 | 144 | 58 | 127 | 7.76e-30 | 112 |
| Msa0070320 | AT1G53160.1 | 71.429 | 70 | 20 | 0 | 75 | 144 | 58 | 127 | 7.76e-30 | 112 |
| Msa0070320 | AT5G43270.3 | 40.385 | 208 | 75 | 8 | 22 | 219 | 119 | 287 | 7.84e-30 | 118 |
| Msa0070320 | AT5G43270.1 | 40.385 | 208 | 75 | 8 | 22 | 219 | 119 | 287 | 7.84e-30 | 118 |
| Msa0070320 | AT5G43270.2 | 40.385 | 208 | 75 | 8 | 22 | 219 | 119 | 287 | 7.84e-30 | 118 |
| Msa0070320 | AT5G50570.1 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa0070320 | AT5G50570.2 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa0070320 | AT5G50670.1 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa0070320 | AT5G50670.2 | 48.611 | 144 | 61 | 4 | 15 | 147 | 36 | 177 | 2.00e-29 | 116 |
| Msa0070320 | AT1G27370.6 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 2.96e-29 | 115 |
| Msa0070320 | AT1G27370.1 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT1G27370.5 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT1G27370.3 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT1G27370.2 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT1G27370.4 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT1G27370.7 | 38.021 | 192 | 90 | 5 | 13 | 190 | 117 | 293 | 6.82e-29 | 115 |
| Msa0070320 | AT2G47070.1 | 70.833 | 72 | 21 | 0 | 76 | 147 | 111 | 182 | 1.18e-28 | 117 |
| Msa0070320 | AT1G02065.1 | 48.387 | 124 | 53 | 2 | 22 | 144 | 148 | 261 | 1.22e-28 | 114 |
| Msa0070320 | AT3G60030.1 | 65.333 | 75 | 26 | 0 | 76 | 150 | 132 | 206 | 3.65e-28 | 116 |
| Msa0070320 | AT1G27360.2 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 7.05e-28 | 112 |
| Msa0070320 | AT1G27360.1 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 7.05e-28 | 112 |
| Msa0070320 | AT1G27360.3 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 7.05e-28 | 112 |
| Msa0070320 | AT1G27360.4 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 7.05e-28 | 112 |
| Msa0070320 | AT1G76580.2 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.66e-27 | 114 |
| Msa0070320 | AT1G76580.1 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.85e-27 | 114 |
| Msa0070320 | AT1G76580.3 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.89e-27 | 114 |
| Msa0070320 | AT1G20980.1 | 46.043 | 139 | 68 | 3 | 70 | 201 | 114 | 252 | 2.09e-27 | 114 |
| Msa0070320 | AT2G47070.2 | 75.472 | 53 | 13 | 0 | 95 | 147 | 1 | 53 | 2.62e-20 | 92.8 |
| Msa0070320 | AT5G18830.2 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.04e-19 | 90.9 |
| Msa0070320 | AT5G18830.3 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.21e-19 | 90.9 |
| Msa0070320 | AT5G18830.1 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.23e-19 | 90.5 |
| Msa0070320 | AT1G02065.2 | 41.176 | 102 | 41 | 2 | 22 | 118 | 148 | 235 | 5.37e-14 | 71.2 |
Find 87 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTCTGTTGTTGTTTC+TGG | 0.016193 | 1_2:+40597673 | Msa0070320:CDS |
| TTCAAACAAATGCTTCTTCT+TGG | 0.204356 | 1_2:+40601767 | Msa0070320:CDS |
| TCATTGTAGTTATCCATTAT+TGG | 0.242355 | 1_2:-40601592 | None:intergenic |
| CTTTCAGGCATTATTTGTTT+TGG | 0.242801 | 1_2:+40602089 | Msa0070320:three_prime_UTR |
| GCTTTCTCCGCCTTTCATTA+TGG | 0.263953 | 1_2:-40600998 | None:intergenic |
| ATTTGTTTGAAGTTGATAAT+TGG | 0.275585 | 1_2:-40601755 | None:intergenic |
| TTCTGTTGTTGTTTCTGGTT+TGG | 0.298755 | 1_2:+40597678 | Msa0070320:CDS |
| CCCGAGGATGTTCCTGATCT+TGG | 0.303604 | 1_2:+40601826 | Msa0070320:CDS |
| AAAGGTAGAAGAGGAGAGTT+TGG | 0.318520 | 1_2:-40601054 | None:intergenic |
| AAACTCTCCTCTTCTACCTT+TGG | 0.328520 | 1_2:+40601056 | Msa0070320:CDS |
| TCATCTACCGAGTTTCTTGA+TGG | 0.335549 | 1_2:+40597403 | Msa0070320:CDS |
| CCACCAACACCAACAGCATT+AGG | 0.337043 | 1_2:-40597499 | None:intergenic |
| TTTCTTGATGGATTAAAGTT+TGG | 0.342712 | 1_2:+40597415 | Msa0070320:CDS |
| TACTAGACATCCTCCAATAA+TGG | 0.345407 | 1_2:+40601579 | Msa0070320:CDS |
| CTGGCACCACCAATGAGTTC+AGG | 0.359216 | 1_2:+40597349 | None:intergenic |
| CACAAGGCAAGAACCATTAC+TGG | 0.360782 | 1_2:+40601905 | Msa0070320:CDS |
| GGGAAAACGCGAGGTTAAAA+AGG | 0.385183 | 1_2:-40601033 | None:intergenic |
| CCTAATGCTGTTGGTGTTGG+TGG | 0.385726 | 1_2:+40597499 | Msa0070320:CDS |
| AACAACTTGTTGAATTTCAA+TGG | 0.386985 | 1_2:+40601700 | Msa0070320:CDS |
| GTCATTTGTGAAATTATAAC+TGG | 0.390812 | 1_2:+40601951 | Msa0070320:three_prime_UTR |
| TCTTCATCATCTTCATCATC+AGG | 0.401033 | 1_2:+40597535 | Msa0070320:CDS |
| GAAATTATAACTGGTGGTAT+TGG | 0.405660 | 1_2:+40601960 | Msa0070320:three_prime_UTR |
| AGCTGCCGCAGGCGTTTAGC+TGG | 0.405674 | 1_2:+40600975 | Msa0070320:CDS |
| CATGGAAGTTTGTTCCTTGT+AGG | 0.408815 | 1_2:-40601549 | None:intergenic |
| TTGTTTCTGGTTTGGAGCAA+AGG | 0.417760 | 1_2:+40597686 | Msa0070320:CDS |
| TGTTTCTAGAGTACCATGTT+TGG | 0.425256 | 1_2:-40601654 | None:intergenic |
| TTTGTTTGAAGTTGATAATT+GGG | 0.443503 | 1_2:-40601754 | None:intergenic |
| AGAAACTCGGTAGATGAGTT+AGG | 0.444243 | 1_2:-40597397 | None:intergenic |
| GATGAGTTAGGTTGTGAAGA+GGG | 0.463824 | 1_2:-40597385 | None:intergenic |
| GTTGTTTGAGCACTGGGAAC+CGG | 0.465176 | 1_2:-40601481 | None:intergenic |
| GTTTGTTTCAACTTATGAGC+AGG | 0.471293 | 1_2:+40602046 | Msa0070320:three_prime_UTR |
| GATGTTCCTGATCTTGGTCT+CGG | 0.501086 | 1_2:+40601832 | Msa0070320:CDS |
| ATTATTGGAGGATGTCTAGT+AGG | 0.503531 | 1_2:-40601577 | None:intergenic |
| GGAACCGGCTCGGCTGATCT+CGG | 0.507738 | 1_2:-40601466 | None:intergenic |
| AAATTGTGTTGTTTGAGCAC+TGG | 0.511683 | 1_2:-40601488 | None:intergenic |
| CAGCTTCCTGAATTCGATCA+AGG | 0.515316 | 1_2:+40600945 | Msa0070320:CDS |
| GGTACAAAACCTGAACTCAT+TGG | 0.518582 | 1_2:-40597358 | None:intergenic |
| TCGTAACTGTTTGTCGCCCG+AGG | 0.521144 | 1_2:+40601810 | Msa0070320:CDS |
| AACTCCGAGATCAGCCGAGC+CGG | 0.521520 | 1_2:+40601462 | Msa0070320:CDS |
| ACCAAGATCAGGAACATCCT+CGG | 0.523631 | 1_2:-40601827 | None:intergenic |
| AATTGTGTTGTTTGAGCACT+GGG | 0.525172 | 1_2:-40601487 | None:intergenic |
| AAGGTAGAAGAGGAGAGTTT+GGG | 0.526795 | 1_2:-40601053 | None:intergenic |
| CCAAGATCAGGAACATCCTC+GGG | 0.531635 | 1_2:-40601826 | None:intergenic |
| CAAATCAAACCTAATGCTGT+TGG | 0.533702 | 1_2:+40597490 | Msa0070320:CDS |
| AGCAAACAAGAGTATTAAAG+TGG | 0.540068 | 1_2:-40601928 | None:intergenic |
| TCTGTGTCAACAGATAATAA+TGG | 0.540600 | 1_2:+40601373 | Msa0070320:intron |
| CTCTTCTGTCAAACCAAACA+TGG | 0.546120 | 1_2:+40601641 | Msa0070320:CDS |
| AGTAGATCTGAGTGGTGCTA+AGG | 0.546255 | 1_2:+40597609 | Msa0070320:CDS |
| AGTATTAAAGTGGCCAGTAA+TGG | 0.550747 | 1_2:-40601918 | None:intergenic |
| TTGGCCTATGTGAACAATGT+GGG | 0.552994 | 1_2:+40602108 | Msa0070320:three_prime_UTR |
| GTTTAGCTGGCCATAATGAA+AGG | 0.554237 | 1_2:+40600988 | Msa0070320:CDS |
| TTGAGCACTGGGAACCGGCT+CGG | 0.557428 | 1_2:-40601476 | None:intergenic |
| AGATGAGTTAGGTTGTGAAG+AGG | 0.562239 | 1_2:-40597386 | None:intergenic |
| CTCAAACAACACAATTTACC+TGG | 0.562586 | 1_2:+40601494 | Msa0070320:CDS |
| CTACAAGGAACAAACTTCCA+TGG | 0.563190 | 1_2:+40601550 | Msa0070320:CDS |
| TTCATCATCAGGAATGAAGA+GGG | 0.564365 | 1_2:+40597546 | Msa0070320:CDS |
| AAACCAGAAACAACAACAGA+AGG | 0.564585 | 1_2:-40597676 | None:intergenic |
| TGGTCTCGGTCAAAATTCGC+AGG | 0.566753 | 1_2:+40601846 | Msa0070320:CDS |
| TCAACAGATAATAATGGCAA+AGG | 0.567701 | 1_2:+40601379 | Msa0070320:intron |
| TTTCTAACCAAAGGTAGAAG+AGG | 0.568592 | 1_2:-40601063 | None:intergenic |
| TGGTATGAAGCACATTCCAT+CGG | 0.569087 | 1_2:-40601412 | None:intergenic |
| AAGTTGAAACAAACAAAAGC+AGG | 0.570923 | 1_2:-40602037 | None:intergenic |
| TTAGGTTGTGAAGAGGGAGA+AGG | 0.574494 | 1_2:-40597379 | None:intergenic |
| CTTTAATCCATCAAGAAACT+CGG | 0.578305 | 1_2:-40597410 | None:intergenic |
| AAGGAAAACGAAGCTGCCGC+AGG | 0.579767 | 1_2:+40600964 | Msa0070320:CDS |
| CAAAGGTAATAACTTTCCGA+TGG | 0.584704 | 1_2:+40601396 | Msa0070320:CDS |
| GCTATTCATAGCGATCTTCG+TGG | 0.587187 | 1_2:+40601868 | Msa0070320:CDS |
| TTGTAGTTATCCATTATTGG+AGG | 0.589950 | 1_2:-40601589 | None:intergenic |
| AAACCTAATGCTGTTGGTGT+TGG | 0.593485 | 1_2:+40597496 | Msa0070320:CDS |
| TATGTGAAACTTTCAGACAT+GGG | 0.598364 | 1_2:+40602142 | Msa0070320:three_prime_UTR |
| CTTCATCATCAGGAATGAAG+AGG | 0.604436 | 1_2:+40597545 | Msa0070320:CDS |
| GTATGTGAAACTTTCAGACA+TGG | 0.604908 | 1_2:+40602141 | Msa0070320:three_prime_UTR |
| ATTGGAGGATGTCTAGTAGG+AGG | 0.622162 | 1_2:-40601574 | None:intergenic |
| AAGTTGTTCATCTCAACACT+TGG | 0.626493 | 1_2:-40601685 | None:intergenic |
| TTTGGCCTATGTGAACAATG+TGG | 0.627820 | 1_2:+40602107 | Msa0070320:three_prime_UTR |
| GGTGAGGTCAACGTTTCACA+AGG | 0.632696 | 1_2:+40601889 | Msa0070320:CDS |
| CATGTGACCTGCTACACTGT+TGG | 0.632750 | 1_2:-40597714 | None:intergenic |
| TCAACCCACATTGTTCACAT+AGG | 0.637989 | 1_2:-40602112 | None:intergenic |
| GGAGAGTTTGGGAAAACGCG+AGG | 0.638128 | 1_2:-40601042 | None:intergenic |
| TCATAGCGATCTTCGTGGTG+AGG | 0.646398 | 1_2:+40601873 | Msa0070320:CDS |
| ATTTGTGAAATTATAACTGG+TGG | 0.659707 | 1_2:+40601954 | Msa0070320:three_prime_UTR |
| ATGTGAAACTTTCAGACATG+GGG | 0.660576 | 1_2:+40602143 | Msa0070320:three_prime_UTR |
| TATGGCCAGCTAAACGCCTG+CGG | 0.662236 | 1_2:-40600980 | None:intergenic |
| GATGTCTAGTAGGAGGACCA+TGG | 0.664660 | 1_2:-40601567 | None:intergenic |
| TCATCATCAGGAATGAAGAG+GGG | 0.691128 | 1_2:+40597547 | Msa0070320:CDS |
| TAGCTGGCCATAATGAAAGG+CGG | 0.703070 | 1_2:+40600991 | Msa0070320:CDS |
| GGTTGTAAAGTAGATCTGAG+TGG | 0.784110 | 1_2:+40597601 | Msa0070320:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATTAAATTTAA+AGG | - | chr1_2:40599555-40599574 | None:intergenic | 0.0% |
| !!! | TTTTAATATATATTGTTTGT+TGG | + | chr1_2:40597926-40597945 | Msa0070320:intron | 10.0% |
| !!! | ATTTTCTATTTCAATTTAAA+AGG | + | chr1_2:40598517-40598536 | Msa0070320:intron | 10.0% |
| !! | AAATATCTTTAAATTTCAAT+TGG | - | chr1_2:40598591-40598610 | None:intergenic | 10.0% |
| !!! | CTCAATAAAAATAAAATTTT+TGG | - | chr1_2:40599160-40599179 | None:intergenic | 10.0% |
| !!! | TCAAATAAATTTTTTTTTGA+GGG | - | chr1_2:40599492-40599511 | None:intergenic | 10.0% |
| !!! | ACAAATAATTTTTTTAATCA+AGG | - | chr1_2:40599597-40599616 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTGTTTAAATAA+AGG | - | chr1_2:40599975-40599994 | None:intergenic | 10.0% |
| !! | CTTTGATAAAATAAATAAAA+AGG | - | chr1_2:40601136-40601155 | None:intergenic | 10.0% |
| !!! | ATGAATAAATTTTATTACTT+TGG | - | chr1_2:40601223-40601242 | None:intergenic | 10.0% |
| !!! | ATAAAATTTATTCATTTTCT+TGG | + | chr1_2:40601228-40601247 | Msa0070320:intron | 10.0% |
| !!! | ATTTTATTATTCTACAAATA+AGG | - | chr1_2:40601346-40601365 | None:intergenic | 10.0% |
| !! | AATTATAAACAAAAGTAGAA+TGG | - | chr1_2:40597763-40597782 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAACACTAAAAA+AGG | - | chr1_2:40597809-40597828 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTCTTTCTATAAT+GGG | + | chr1_2:40597816-40597835 | Msa0070320:intron | 15.0% |
| !! | ATTTCATTTGAATTTGATAA+TGG | + | chr1_2:40598014-40598033 | Msa0070320:intron | 15.0% |
| !!! | ATAATTTGTAAATGTATGTT+TGG | + | chr1_2:40598554-40598573 | Msa0070320:intron | 15.0% |
| !!! | ATGTTTCAAATAAATGTTTT+GGG | + | chr1_2:40598887-40598906 | Msa0070320:intron | 15.0% |
| !!! | TTTATTTTTATTGAGTCATT+AGG | + | chr1_2:40599165-40599184 | Msa0070320:intron | 15.0% |
| !! | TAGCTAAAATTATATTATTG+GGG | - | chr1_2:40599211-40599230 | None:intergenic | 15.0% |
| !! | GTAGCTAAAATTATATTATT+GGG | - | chr1_2:40599212-40599231 | None:intergenic | 15.0% |
| !! | CAAAAATAGCATAAATTAAA+AGG | + | chr1_2:40599252-40599271 | Msa0070320:intron | 15.0% |
| !!! | GTCAAATAAATTTTTTTTTG+AGG | - | chr1_2:40599493-40599512 | None:intergenic | 15.0% |
| !! | TGTTTAATCTCTATAAAATT+AGG | - | chr1_2:40599525-40599544 | None:intergenic | 15.0% |
| !! | ATGATATAAAGTTATTAGTA+AGG | - | chr1_2:40600326-40600345 | None:intergenic | 15.0% |
| !! | CTAAATAAATAACACTTAAA+TGG | - | chr1_2:40601104-40601123 | None:intergenic | 15.0% |
| !!! | ATTTTATCAAAGTTCAAATA+AGG | + | chr1_2:40601144-40601163 | Msa0070320:intron | 15.0% |
| !! | AAATGAAATGATTAATAGTT+AGG | + | chr1_2:40601169-40601188 | Msa0070320:intron | 15.0% |
| !! | AATGAAATGATTAATAGTTA+GGG | + | chr1_2:40601170-40601189 | Msa0070320:intron | 15.0% |
| !!! | TAAATTTTATTACTTTGGAT+TGG | - | chr1_2:40601218-40601237 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTCTTTCTATAA+TGG | + | chr1_2:40597815-40597834 | Msa0070320:intron | 20.0% |
| !! | TAAAAAAGACAAAATGAGTT+AGG | - | chr1_2:40597877-40597896 | None:intergenic | 20.0% |
| !! | TTCCTAGTAAAAATAAATGT+AGG | - | chr1_2:40598118-40598137 | None:intergenic | 20.0% |
| !!! | TCATAAAATTCTGAAATTTC+AGG | - | chr1_2:40598189-40598208 | None:intergenic | 20.0% |
| !! | TCCAAATTTCAAAGAAAAAA+TGG | + | chr1_2:40598221-40598240 | Msa0070320:intron | 20.0% |
| !!! | ACCATTTTTTCTTTGAAATT+TGG | - | chr1_2:40598225-40598244 | None:intergenic | 20.0% |
| !! | TATTTCAATTTAAAAGGCTT+TGG | + | chr1_2:40598523-40598542 | Msa0070320:intron | 20.0% |
| !!! | CATTACATACCAAATATTTT+AGG | + | chr1_2:40598751-40598770 | Msa0070320:intron | 20.0% |
| !!! | CATGTTTCAAATAAATGTTT+TGG | + | chr1_2:40598886-40598905 | Msa0070320:intron | 20.0% |
| !! | AGTCATTAGGTATATTTATA+TGG | + | chr1_2:40599178-40599197 | Msa0070320:intron | 20.0% |
| !! | GGTAGCTAAAATTATATTAT+TGG | - | chr1_2:40599213-40599232 | None:intergenic | 20.0% |
| !! | AGACGATAATTTAATACAAA+TGG | + | chr1_2:40599392-40599411 | Msa0070320:intron | 20.0% |
| !! | TCTCCATAGATATAAAAATT+TGG | - | chr1_2:40600718-40600737 | None:intergenic | 20.0% |
| !!! | AATTTTTATATCTATGGAGA+AGG | + | chr1_2:40600718-40600737 | Msa0070320:intron | 20.0% |
| !! | ATGAAATGATTAATAGTTAG+GGG | + | chr1_2:40601171-40601190 | Msa0070320:intron | 20.0% |
| !! | AATAACTACGACATTTAAAA+AGG | + | chr1_2:40601259-40601278 | Msa0070320:intron | 20.0% |
| !! | ATAACTACGACATTTAAAAA+GGG | + | chr1_2:40601260-40601279 | Msa0070320:intron | 20.0% |
| !! | TGTAGAATAATAAAATTGCT+TGG | + | chr1_2:40601350-40601369 | Msa0070320:intron | 20.0% |
| !!! | TTTGTTTGAAGTTGATAATT+GGG | - | chr1_2:40601757-40601776 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGAAGTTGATAAT+TGG | - | chr1_2:40601758-40601777 | None:intergenic | 20.0% |
| !!! | TACTAGTGCTTATTTTATTT+TGG | + | chr1_2:40602003-40602022 | Msa0070320:three_prime_UTR | 20.0% |
| !!! | CTTATTTTATTTTGGAACTT+TGG | + | chr1_2:40602011-40602030 | Msa0070320:three_prime_UTR | 20.0% |
| !!! | TTTCTTGATGGATTAAAGTT+TGG | + | chr1_2:40597415-40597434 | Msa0070320:CDS | 25.0% |
| !!! | TTTTCTTTCTATAATGGGTA+TGG | + | chr1_2:40597821-40597840 | Msa0070320:intron | 25.0% |
| ! | ATAGATTTCTTAGATGTTGT+TGG | + | chr1_2:40597980-40597999 | Msa0070320:intron | 25.0% |
| ! | TCCTAATGTTCTTCTATTAT+TGG | + | chr1_2:40598051-40598070 | Msa0070320:intron | 25.0% |
| ! | TCCAATAATAGAAGAACATT+AGG | - | chr1_2:40598055-40598074 | None:intergenic | 25.0% |
| !!! | TGCCTACATTTATTTTTACT+AGG | + | chr1_2:40598113-40598132 | Msa0070320:intron | 25.0% |
| !!! | TCTTTGAAATTTGGAAAGAA+TGG | - | chr1_2:40598216-40598235 | None:intergenic | 25.0% |
| !! | TAATAAATAACTTGCCATGT+GGG | - | chr1_2:40598297-40598316 | None:intergenic | 25.0% |
| !! | TTAATAAATAACTTGCCATG+TGG | - | chr1_2:40598298-40598317 | None:intergenic | 25.0% |
| !!! | CAACATCTTACACTTTTTTT+GGG | - | chr1_2:40598617-40598636 | None:intergenic | 25.0% |
| !!! | ACAACATCTTACACTTTTTT+TGG | - | chr1_2:40598618-40598637 | None:intergenic | 25.0% |
| !!! | AGTGTAAGATGTTGTTTTAT+TGG | + | chr1_2:40598623-40598642 | Msa0070320:intron | 25.0% |
| !! | TGGATAATTTGTGATTACTT+AGG | + | chr1_2:40598643-40598662 | Msa0070320:intron | 25.0% |
| ! | ATTTGTGATTACTTAGGAAA+AGG | + | chr1_2:40598649-40598668 | Msa0070320:intron | 25.0% |
| ! | TTTGAAAAGGCAAATGTATT+TGG | + | chr1_2:40598722-40598741 | Msa0070320:intron | 25.0% |
| ! | AGTTGAAGTCCTAAAATATT+TGG | - | chr1_2:40598763-40598782 | None:intergenic | 25.0% |
| !!! | TCTTCTTTCTTTGTTGTTTT+AGG | + | chr1_2:40598833-40598852 | Msa0070320:intron | 25.0% |
| ! | TATACTAAAGATGATGCTTA+TGG | + | chr1_2:40598942-40598961 | Msa0070320:intron | 25.0% |
| ! | ATACTAAAGATGATGCTTAT+GGG | + | chr1_2:40598943-40598962 | Msa0070320:intron | 25.0% |
| ! | GAATATTTGCTTATTGTTGT+CGG | + | chr1_2:40600232-40600251 | Msa0070320:intron | 25.0% |
| !!! | CAATGAAGGATTTTAGTTTT+TGG | + | chr1_2:40600274-40600293 | Msa0070320:intron | 25.0% |
| !!! | TTTAGTTTTTGGTGCTTAAA+TGG | + | chr1_2:40600285-40600304 | Msa0070320:intron | 25.0% |
| !!! | TTAGTTTTTGGTGCTTAAAT+GGG | + | chr1_2:40600286-40600305 | Msa0070320:intron | 25.0% |
| ! | TATAAGAATTGGTACCTTAT+AGG | - | chr1_2:40600482-40600501 | None:intergenic | 25.0% |
| ! | TAGCTTATCTCTATAAGAAT+TGG | - | chr1_2:40600493-40600512 | None:intergenic | 25.0% |
| ! | ATTAAGAAATTGAAATGCAG+GGG | - | chr1_2:40600633-40600652 | None:intergenic | 25.0% |
| ! | CATTAAGAAATTGAAATGCA+GGG | - | chr1_2:40600634-40600653 | None:intergenic | 25.0% |
| ! | TCATTAAGAAATTGAAATGC+AGG | - | chr1_2:40600635-40600654 | None:intergenic | 25.0% |
| !! | GAGCCAAATTTTTATATCTA+TGG | + | chr1_2:40600712-40600731 | Msa0070320:intron | 25.0% |
| !! | TTTTTAAACTCAAACTGACT+TGG | - | chr1_2:40600776-40600795 | None:intergenic | 25.0% |
| ! | AAGGAATAATTTCTAACCAA+AGG | - | chr1_2:40601075-40601094 | None:intergenic | 25.0% |
| ! | AACACTTAAATGGTAACAAA+AGG | - | chr1_2:40601094-40601113 | None:intergenic | 25.0% |
| ! | AAGCTGAAAACATAGATATT+TGG | - | chr1_2:40601315-40601334 | None:intergenic | 25.0% |
| !! | TTCATACCAAAAATTTTCTC+TGG | + | chr1_2:40601426-40601445 | Msa0070320:CDS | 25.0% |
| !! | TCATACCAAAAATTTTCTCT+GGG | + | chr1_2:40601427-40601446 | Msa0070320:CDS | 25.0% |
| ! | TCATTGTAGTTATCCATTAT+TGG | - | chr1_2:40601595-40601614 | None:intergenic | 25.0% |
| !!! | AACAACTTGTTGAATTTCAA+TGG | + | chr1_2:40601700-40601719 | Msa0070320:CDS | 25.0% |
| ! | GTCATTTGTGAAATTATAAC+TGG | + | chr1_2:40601951-40601970 | Msa0070320:three_prime_UTR | 25.0% |
| ! | ATTTGTGAAATTATAACTGG+TGG | + | chr1_2:40601954-40601973 | Msa0070320:three_prime_UTR | 25.0% |
| CTTTAATCCATCAAGAAACT+CGG | - | chr1_2:40597413-40597432 | None:intergenic | 30.0% | |
| TGGTCAAAAAATCTACTTTG+AGG | + | chr1_2:40597435-40597454 | Msa0070320:CDS | 30.0% | |
| ! | ACATGCTTTTATGCAAATGA+TGG | + | chr1_2:40598148-40598167 | Msa0070320:intron | 30.0% |
| TATTCATTCACCATTATACC+TGG | + | chr1_2:40598341-40598360 | Msa0070320:intron | 30.0% | |
| TCTTAATGAAGGATAAGCAT+GGG | + | chr1_2:40598432-40598451 | Msa0070320:intron | 30.0% | |
| ! | TTTAAAAGGCTTTGGTTGAT+TGG | + | chr1_2:40598531-40598550 | Msa0070320:intron | 30.0% |
| ! | AGCGAACTAAAGTTTTTATC+AGG | + | chr1_2:40598689-40598708 | Msa0070320:intron | 30.0% |
| !! | AGGAAGTGTAGATTTTGAAA+AGG | + | chr1_2:40598709-40598728 | Msa0070320:intron | 30.0% |
| AGTAAGAGAGTGAAGTTTAT+TGG | + | chr1_2:40598971-40598990 | Msa0070320:intron | 30.0% | |
| ! | TTTTGTATATTAAACCTCCG+AGG | + | chr1_2:40599013-40599032 | Msa0070320:intron | 30.0% |
| ! | TGTGCAAATGAATTTGTTTG+AGG | - | chr1_2:40599234-40599253 | None:intergenic | 30.0% |
| !!! | AGCTAGGAAATTTTTTACGA+GGG | - | chr1_2:40599628-40599647 | None:intergenic | 30.0% |
| !!! | AAGCTAGGAAATTTTTTACG+AGG | - | chr1_2:40599629-40599648 | None:intergenic | 30.0% |
| CTTATGAAAAAGTTAGACGT+AGG | - | chr1_2:40600663-40600682 | None:intergenic | 30.0% | |
| TCTGTGTCAACAGATAATAA+TGG | + | chr1_2:40601373-40601392 | Msa0070320:intron | 30.0% | |
| TCAACAGATAATAATGGCAA+AGG | + | chr1_2:40601379-40601398 | Msa0070320:intron | 30.0% | |
| ! | CATTTCCCAGAGAAAATTTT+TGG | - | chr1_2:40601435-40601454 | None:intergenic | 30.0% |
| TTGTAGTTATCCATTATTGG+AGG | - | chr1_2:40601592-40601611 | None:intergenic | 30.0% | |
| TTCAAACAAATGCTTCTTCT+TGG | + | chr1_2:40601767-40601786 | Msa0070320:CDS | 30.0% | |
| !! | TGCTTCTTCTTGGTTTTTAA+AGG | + | chr1_2:40601777-40601796 | Msa0070320:CDS | 30.0% |
| !! | GCTTCTTCTTGGTTTTTAAA+GGG | + | chr1_2:40601778-40601797 | Msa0070320:CDS | 30.0% |
| !! | AGCAAACAAGAGTATTAAAG+TGG | - | chr1_2:40601931-40601950 | None:intergenic | 30.0% |
| GAAATTATAACTGGTGGTAT+TGG | + | chr1_2:40601960-40601979 | Msa0070320:three_prime_UTR | 30.0% | |
| AAGTTGAAACAAACAAAAGC+AGG | - | chr1_2:40602040-40602059 | None:intergenic | 30.0% | |
| ! | TATCATTTTGTGGAACTTTC+AGG | + | chr1_2:40602074-40602093 | Msa0070320:three_prime_UTR | 30.0% |
| ! | CTTTCAGGCATTATTTGTTT+TGG | + | chr1_2:40602089-40602108 | Msa0070320:three_prime_UTR | 30.0% |
| CAAATCAAACCTAATGCTGT+TGG | + | chr1_2:40597490-40597509 | Msa0070320:CDS | 35.0% | |
| TCTTCATCATCTTCATCATC+AGG | + | chr1_2:40597535-40597554 | Msa0070320:CDS | 35.0% | |
| TTCATCATCAGGAATGAAGA+GGG | + | chr1_2:40597546-40597565 | Msa0070320:CDS | 35.0% | |
| AAACCAGAAACAACAACAGA+AGG | - | chr1_2:40597679-40597698 | None:intergenic | 35.0% | |
| !! | TTCTGTTGTTGTTTCTGGTT+TGG | + | chr1_2:40597678-40597697 | Msa0070320:CDS | 35.0% |
| !! | TTTCTATAATGGGTATGGTC+TGG | + | chr1_2:40597826-40597845 | Msa0070320:intron | 35.0% |
| ATGAGTTAGGCAAAACAAGA+AGG | - | chr1_2:40597864-40597883 | None:intergenic | 35.0% | |
| GTTCTTCTATTATTGGAGAC+TGG | + | chr1_2:40598058-40598077 | Msa0070320:intron | 35.0% | |
| ATTGACATCAACTTCTCAAG+GGG | - | chr1_2:40598249-40598268 | None:intergenic | 35.0% | |
| GATTGACATCAACTTCTCAA+GGG | - | chr1_2:40598250-40598269 | None:intergenic | 35.0% | |
| AGATTGACATCAACTTCTCA+AGG | - | chr1_2:40598251-40598270 | None:intergenic | 35.0% | |
| GTAGAAAAAATGATCCCACA+TGG | + | chr1_2:40598280-40598299 | Msa0070320:intron | 35.0% | |
| AAAGGTTCTTCCAGGTATAA+TGG | - | chr1_2:40598354-40598373 | None:intergenic | 35.0% | |
| TAAAGCTAAAAGGTTCTTCC+AGG | - | chr1_2:40598362-40598381 | None:intergenic | 35.0% | |
| GTCTTAATGAAGGATAAGCA+TGG | + | chr1_2:40598431-40598450 | Msa0070320:intron | 35.0% | |
| GATGTAATTCACACATCCTT+TGG | - | chr1_2:40599089-40599108 | None:intergenic | 35.0% | |
| GGATGTGTGAATTACATCTT+AGG | + | chr1_2:40599091-40599110 | Msa0070320:intron | 35.0% | |
| TGTGAATTACATCTTAGGCA+GGG | + | chr1_2:40599096-40599115 | Msa0070320:intron | 35.0% | |
| !!! | CTAGGAAATTTTTTACGAGG+GGG | - | chr1_2:40599626-40599645 | None:intergenic | 35.0% |
| !!! | GCTAGGAAATTTTTTACGAG+GGG | - | chr1_2:40599627-40599646 | None:intergenic | 35.0% |
| !!! | CTTAGGTTTAGGGTTTTTTG+TGG | + | chr1_2:40599659-40599678 | Msa0070320:intron | 35.0% |
| !! | GTGTTGTTGTTCTTGTTGTT+CGG | + | chr1_2:40599819-40599838 | Msa0070320:intron | 35.0% |
| ACATCACTTGTGTGACATTA+TGG | + | chr1_2:40599902-40599921 | Msa0070320:intron | 35.0% | |
| ATATGAGATCCTCTTCTCAA+TGG | + | chr1_2:40600424-40600443 | Msa0070320:intron | 35.0% | |
| TATGAGATCCTCTTCTCAAT+GGG | + | chr1_2:40600425-40600444 | Msa0070320:intron | 35.0% | |
| CGTTGTAGACATATCCATAA+TGG | - | chr1_2:40600453-40600472 | None:intergenic | 35.0% | |
| TTATGGATATGTCTACAACG+CGG | + | chr1_2:40600453-40600472 | Msa0070320:intron | 35.0% | |
| !!! | CTTTTTCATAAGCATCGATG+AGG | + | chr1_2:40600671-40600690 | Msa0070320:intron | 35.0% |
| TTGAGATAAAAACGATCCCA+CGG | - | chr1_2:40600883-40600902 | None:intergenic | 35.0% | |
| TTTCTAACCAAAGGTAGAAG+AGG | - | chr1_2:40601066-40601085 | None:intergenic | 35.0% | |
| CAAAGGTAATAACTTTCCGA+TGG | + | chr1_2:40601396-40601415 | Msa0070320:CDS | 35.0% | |
| !! | AATTGTGTTGTTTGAGCACT+GGG | - | chr1_2:40601490-40601509 | None:intergenic | 35.0% |
| !! | AAATTGTGTTGTTTGAGCAC+TGG | - | chr1_2:40601491-40601510 | None:intergenic | 35.0% |
| CTCAAACAACACAATTTACC+TGG | + | chr1_2:40601494-40601513 | Msa0070320:CDS | 35.0% | |
| ATTATTGGAGGATGTCTAGT+AGG | - | chr1_2:40601580-40601599 | None:intergenic | 35.0% | |
| TACTAGACATCCTCCAATAA+TGG | + | chr1_2:40601579-40601598 | Msa0070320:CDS | 35.0% | |
| !! | TGTTTCTAGAGTACCATGTT+TGG | - | chr1_2:40601657-40601676 | None:intergenic | 35.0% |
| AAGTTGTTCATCTCAACACT+TGG | - | chr1_2:40601688-40601707 | None:intergenic | 35.0% | |
| AGTATTAAAGTGGCCAGTAA+TGG | - | chr1_2:40601921-40601940 | None:intergenic | 35.0% | |
| GTTTGTTTCAACTTATGAGC+AGG | + | chr1_2:40602046-40602065 | Msa0070320:three_prime_UTR | 35.0% | |
| ! | GCAGGATCTTTATCATTTTG+TGG | + | chr1_2:40602064-40602083 | Msa0070320:three_prime_UTR | 35.0% |
| ! | GATGAGTTAGGTTGTGAAGA+GGG | - | chr1_2:40597388-40597407 | None:intergenic | 40.0% |
| ! | AGATGAGTTAGGTTGTGAAG+AGG | - | chr1_2:40597389-40597408 | None:intergenic | 40.0% |
| AGAAACTCGGTAGATGAGTT+AGG | - | chr1_2:40597400-40597419 | None:intergenic | 40.0% | |
| TCATCTACCGAGTTTCTTGA+TGG | + | chr1_2:40597403-40597422 | Msa0070320:CDS | 40.0% | |
| AAACCTAATGCTGTTGGTGT+TGG | + | chr1_2:40597496-40597515 | Msa0070320:CDS | 40.0% | |
| CTTCATCATCAGGAATGAAG+AGG | + | chr1_2:40597545-40597564 | Msa0070320:CDS | 40.0% | |
| TCATCATCAGGAATGAAGAG+GGG | + | chr1_2:40597547-40597566 | Msa0070320:CDS | 40.0% | |
| GGTTGTAAAGTAGATCTGAG+TGG | + | chr1_2:40597601-40597620 | Msa0070320:intron | 40.0% | |
| !! | TCTCCTTCTGTTGTTGTTTC+TGG | + | chr1_2:40597673-40597692 | Msa0070320:CDS | 40.0% |
| !! | TTGTTTCTGGTTTGGAGCAA+AGG | + | chr1_2:40597686-40597705 | Msa0070320:CDS | 40.0% |
| TTGACATCAACTTCTCAAGG+GGG | - | chr1_2:40598248-40598267 | None:intergenic | 40.0% | |
| GTCACATGGCTAAAGCTAAA+AGG | - | chr1_2:40598372-40598391 | None:intergenic | 40.0% | |
| TGTCCTACTGGTAAAAGAAG+TGG | + | chr1_2:40598393-40598412 | Msa0070320:intron | 40.0% | |
| GTCCTACTGGTAAAAGAAGT+GGG | + | chr1_2:40598394-40598413 | Msa0070320:intron | 40.0% | |
| ! | TACCCACTTCTTTTACCAGT+AGG | - | chr1_2:40598399-40598418 | None:intergenic | 40.0% |
| TAAAAGAAGTGGGTAGTGAG+AGG | + | chr1_2:40598404-40598423 | Msa0070320:intron | 40.0% | |
| AAAAGAAGTGGGTAGTGAGA+GGG | + | chr1_2:40598405-40598424 | Msa0070320:intron | 40.0% | |
| !! | GAGAGGGTTAGTCTTAATGA+AGG | + | chr1_2:40598421-40598440 | Msa0070320:intron | 40.0% |
| ATATTAAACCTCCGAGGCAT+AGG | + | chr1_2:40599019-40599038 | Msa0070320:intron | 40.0% | |
| GTAATTCACACATCCTTTGG+TGG | - | chr1_2:40599086-40599105 | None:intergenic | 40.0% | |
| GTGTGAATTACATCTTAGGC+AGG | + | chr1_2:40599095-40599114 | Msa0070320:intron | 40.0% | |
| GTGAATTACATCTTAGGCAG+GGG | + | chr1_2:40599097-40599116 | Msa0070320:intron | 40.0% | |
| AACCCTAAACCTAAGATCAG+CGG | - | chr1_2:40599654-40599673 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTTTGTGGCTC+TGG | + | chr1_2:40599665-40599684 | Msa0070320:intron | 40.0% |
| !!! | TTAGGGTTTTTTGTGGCTCT+GGG | + | chr1_2:40599666-40599685 | Msa0070320:intron | 40.0% |
| !!! | GAGTTCTCTCTGGCTTTTAT+GGG | + | chr1_2:40599725-40599744 | Msa0070320:intron | 40.0% |
| ! | TATTCCCTCTTTGGGAAGTT+AGG | + | chr1_2:40599753-40599772 | Msa0070320:intron | 40.0% |
| !!! | AGCATTTTGGGGCTTTTCTT+TGG | + | chr1_2:40599854-40599873 | Msa0070320:intron | 40.0% |
| !!! | GCATTTTGGGGCTTTTCTTT+GGG | + | chr1_2:40599855-40599874 | Msa0070320:intron | 40.0% |
| GAAAACAACGGACAACACTT+GGG | - | chr1_2:40600087-40600106 | None:intergenic | 40.0% | |
| !! | TGTTGTCCGTTGTTTTCGTT+GGG | + | chr1_2:40600090-40600109 | Msa0070320:intron | 40.0% |
| CACGAGAAAAACTACAAGAG+GGG | - | chr1_2:40600150-40600169 | None:intergenic | 40.0% | |
| GCACGAGAAAAACTACAAGA+GGG | - | chr1_2:40600151-40600170 | None:intergenic | 40.0% | |
| TGCACGAGAAAAACTACAAG+AGG | - | chr1_2:40600152-40600171 | None:intergenic | 40.0% | |
| TATGGAACCAACAAAGAGAG+AGG | + | chr1_2:40600395-40600414 | Msa0070320:intron | 40.0% | |
| ATGGAACCAACAAAGAGAGA+GGG | + | chr1_2:40600396-40600415 | Msa0070320:intron | 40.0% | |
| TAATGGTACCCATTGAGAAG+AGG | - | chr1_2:40600436-40600455 | None:intergenic | 40.0% | |
| CTTCTCAATGGGTACCATTA+TGG | + | chr1_2:40600436-40600455 | Msa0070320:intron | 40.0% | |
| TATGGATATGTCTACAACGC+GGG | + | chr1_2:40600454-40600473 | Msa0070320:intron | 40.0% | |
| TAGAGATAAGCTAACCCCAT+TGG | + | chr1_2:40600500-40600519 | Msa0070320:intron | 40.0% | |
| AGAGATAAGCTAACCCCATT+GGG | + | chr1_2:40600501-40600520 | Msa0070320:intron | 40.0% | |
| !!! | ATAAGCATCGATGAGGCTTT+TGG | + | chr1_2:40600678-40600697 | Msa0070320:intron | 40.0% |
| ! | GAGAAGGTCTTATGCATTAG+AGG | + | chr1_2:40600734-40600753 | Msa0070320:intron | 40.0% |
| CTGTGCAAGTTCTATCAAAG+AGG | - | chr1_2:40600918-40600937 | None:intergenic | 40.0% | |
| CTCTTTGATAGAACTTGCAC+AGG | + | chr1_2:40600916-40600935 | Msa0070320:intron | 40.0% | |
| ! | CGTTTTCCTTGATCGAATTC+AGG | - | chr1_2:40600954-40600973 | None:intergenic | 40.0% |
| GTTTAGCTGGCCATAATGAA+AGG | + | chr1_2:40600988-40601007 | Msa0070320:CDS | 40.0% | |
| AAGGTAGAAGAGGAGAGTTT+GGG | - | chr1_2:40601056-40601075 | None:intergenic | 40.0% | |
| AAAGGTAGAAGAGGAGAGTT+TGG | - | chr1_2:40601057-40601076 | None:intergenic | 40.0% | |
| AAACTCTCCTCTTCTACCTT+TGG | + | chr1_2:40601056-40601075 | Msa0070320:CDS | 40.0% | |
| CGACATTTAAAAAGGGACGA+AGG | + | chr1_2:40601267-40601286 | Msa0070320:intron | 40.0% | |
| TGGTATGAAGCACATTCCAT+CGG | - | chr1_2:40601415-40601434 | None:intergenic | 40.0% | |
| CCTTGTAGGAAAAAGTTCGA+TGG | - | chr1_2:40601538-40601557 | None:intergenic | 40.0% | |
| !! | CCATCGAACTTTTTCCTACA+AGG | + | chr1_2:40601535-40601554 | Msa0070320:CDS | 40.0% |
| ! | CATGGAAGTTTGTTCCTTGT+AGG | - | chr1_2:40601552-40601571 | None:intergenic | 40.0% |
| CTACAAGGAACAAACTTCCA+TGG | + | chr1_2:40601550-40601569 | Msa0070320:CDS | 40.0% | |
| CTCTTCTGTCAAACCAAACA+TGG | + | chr1_2:40601641-40601660 | Msa0070320:CDS | 40.0% | |
| TTTGGCCTATGTGAACAATG+TGG | + | chr1_2:40602107-40602126 | Msa0070320:three_prime_UTR | 40.0% | |
| TTGGCCTATGTGAACAATGT+GGG | + | chr1_2:40602108-40602127 | Msa0070320:three_prime_UTR | 40.0% | |
| TCAACCCACATTGTTCACAT+AGG | - | chr1_2:40602115-40602134 | None:intergenic | 40.0% | |
| ! | TTAGGTTGTGAAGAGGGAGA+AGG | - | chr1_2:40597382-40597401 | None:intergenic | 45.0% |
| GGGGAAATAATCATCCACGT+AGG | + | chr1_2:40597566-40597585 | Msa0070320:intron | 45.0% | |
| ! | AGTAGATCTGAGTGGTGCTA+AGG | + | chr1_2:40597609-40597628 | Msa0070320:CDS | 45.0% |
| TACCAGTAGGACATGTCACA+TGG | - | chr1_2:40598386-40598405 | None:intergenic | 45.0% | |
| CAATGCATGAACACCACCAA+AGG | + | chr1_2:40599070-40599089 | Msa0070320:intron | 45.0% | |
| GCGAATCCTTTCAATGGGAT+GGG | + | chr1_2:40599119-40599138 | Msa0070320:intron | 45.0% | |
| CGAATCCTTTCAATGGGATG+GGG | + | chr1_2:40599120-40599139 | Msa0070320:intron | 45.0% | |
| !!! | GGAGTTCTCTCTGGCTTTTA+TGG | + | chr1_2:40599724-40599743 | Msa0070320:intron | 45.0% |
| !!! | TTCTCTCTGGCTTTTATGGG+TGG | + | chr1_2:40599728-40599747 | Msa0070320:intron | 45.0% |
| !!! | TCTCTCTGGCTTTTATGGGT+GGG | + | chr1_2:40599729-40599748 | Msa0070320:intron | 45.0% |
| CAGACCTAACTTCCCAAAGA+GGG | - | chr1_2:40599760-40599779 | None:intergenic | 45.0% | |
| ! | CTCTTTGGGAAGTTAGGTCT+GGG | + | chr1_2:40599759-40599778 | Msa0070320:intron | 45.0% |
| CCCAAAATGCTTGCAACAAC+GGG | - | chr1_2:40599845-40599864 | None:intergenic | 45.0% | |
| ! | CCCGTTGTTGCAAGCATTTT+GGG | + | chr1_2:40599842-40599861 | Msa0070320:intron | 45.0% |
| CCCCAAAATGCTTGCAACAA+CGG | - | chr1_2:40599846-40599865 | None:intergenic | 45.0% | |
| ! | CCGTTGTTGCAAGCATTTTG+GGG | + | chr1_2:40599843-40599862 | Msa0070320:intron | 45.0% |
| GTCACGTGACACACTATGAT+TGG | - | chr1_2:40599950-40599969 | None:intergenic | 45.0% | |
| GAAAACCCGTTGTCACATTG+TGG | + | chr1_2:40600024-40600043 | Msa0070320:intron | 45.0% | |
| GCTAACCACAATGTGACAAC+GGG | - | chr1_2:40600032-40600051 | None:intergenic | 45.0% | |
| GGCTAACCACAATGTGACAA+CGG | - | chr1_2:40600033-40600052 | None:intergenic | 45.0% | |
| ! | TGTGGTTAGCCAATGTCACA+TGG | + | chr1_2:40600042-40600061 | Msa0070320:intron | 45.0% |
| GTGTCAATGCCATGTGACAT+TGG | - | chr1_2:40600054-40600073 | None:intergenic | 45.0% | |
| CGAAAACAACGGACAACACT+TGG | - | chr1_2:40600088-40600107 | None:intergenic | 45.0% | |
| !! | GTGTTGTCCGTTGTTTTCGT+TGG | + | chr1_2:40600089-40600108 | Msa0070320:intron | 45.0% |
| CATGCAAAACAAAGCAGGGA+AGG | - | chr1_2:40600127-40600146 | None:intergenic | 45.0% | |
| !! | ACCAAGAGCATCGACAATGA+AGG | + | chr1_2:40600260-40600279 | Msa0070320:intron | 45.0% |
| TCCTTCATTGTCGATGCTCT+TGG | - | chr1_2:40600264-40600283 | None:intergenic | 45.0% | |
| TAAGCACCCTCTCTCTTTGT+TGG | - | chr1_2:40600405-40600424 | None:intergenic | 45.0% | |
| GAGATAAGCTAACCCCATTG+GGG | + | chr1_2:40600502-40600521 | Msa0070320:intron | 45.0% | |
| !! | GACTTGGCTCTGGTTCAAAT+TGG | - | chr1_2:40600760-40600779 | None:intergenic | 45.0% |
| !! | AACTCAAACTGACTTGGCTC+TGG | - | chr1_2:40600770-40600789 | None:intergenic | 45.0% |
| ACCACACTGTTACATAACCG+TGG | + | chr1_2:40600863-40600882 | Msa0070320:intron | 45.0% | |
| CCACACTGTTACATAACCGT+GGG | + | chr1_2:40600864-40600883 | Msa0070320:intron | 45.0% | |
| CAGCTTCCTGAATTCGATCA+AGG | + | chr1_2:40600945-40600964 | Msa0070320:CDS | 45.0% | |
| TAGCTGGCCATAATGAAAGG+CGG | + | chr1_2:40600991-40601010 | Msa0070320:CDS | 45.0% | |
| GCTTTCTCCGCCTTTCATTA+TGG | - | chr1_2:40601001-40601020 | None:intergenic | 45.0% | |
| GTTAAAAAGGAGCTCGGTTG+GGG | - | chr1_2:40601023-40601042 | None:intergenic | 45.0% | |
| GGTTAAAAAGGAGCTCGGTT+GGG | - | chr1_2:40601024-40601043 | None:intergenic | 45.0% | |
| AGGTTAAAAAGGAGCTCGGT+TGG | - | chr1_2:40601025-40601044 | None:intergenic | 45.0% | |
| GGGAAAACGCGAGGTTAAAA+AGG | - | chr1_2:40601036-40601055 | None:intergenic | 45.0% | |
| !! | TGTCGATGAGTTGTTTTGCC+AGG | - | chr1_2:40601515-40601534 | None:intergenic | 45.0% |
| ATTGGAGGATGTCTAGTAGG+AGG | - | chr1_2:40601577-40601596 | None:intergenic | 45.0% | |
| ACCAAGATCAGGAACATCCT+CGG | - | chr1_2:40601830-40601849 | None:intergenic | 45.0% | |
| GATGTTCCTGATCTTGGTCT+CGG | + | chr1_2:40601832-40601851 | Msa0070320:CDS | 45.0% | |
| ! | TTTTGACCGAGACCAAGATC+AGG | - | chr1_2:40601841-40601860 | None:intergenic | 45.0% |
| GCTATTCATAGCGATCTTCG+TGG | + | chr1_2:40601868-40601887 | Msa0070320:CDS | 45.0% | |
| CACAAGGCAAGAACCATTAC+TGG | + | chr1_2:40601905-40601924 | Msa0070320:CDS | 45.0% | |
| !!! | TCAATAAAAATAAAATTTTT+GGG | - | chr1_2:40599159-40599178 | None:intergenic | 5.0% |
| !! | TTAAAAAAATTATTTGTATT+TGG | + | chr1_2:40599600-40599619 | Msa0070320:intron | 5.0% |
| !!! | TATTTTAATATTCAATTATA+TGG | + | chr1_2:40600377-40600396 | Msa0070320:intron | 5.0% |
| CCACCAACACCAACAGCATT+AGG | - | chr1_2:40597502-40597521 | None:intergenic | 50.0% | |
| !! | CCTAATGCTGTTGGTGTTGG+TGG | + | chr1_2:40597499-40597518 | Msa0070320:CDS | 50.0% |
| CCTTCAACTTGACACCTACG+TGG | - | chr1_2:40597583-40597602 | None:intergenic | 50.0% | |
| !! | CCACGTAGGTGTCAAGTTGA+AGG | + | chr1_2:40597580-40597599 | Msa0070320:intron | 50.0% |
| ! | GGTTTTGCCAACAGTGTAGC+AGG | + | chr1_2:40597707-40597726 | Msa0070320:CDS | 50.0% |
| CATGTGACCTGCTACACTGT+TGG | - | chr1_2:40597717-40597736 | None:intergenic | 50.0% | |
| AGCCATGTGACATGTCCTAC+TGG | + | chr1_2:40598381-40598400 | Msa0070320:intron | 50.0% | |
| CAGGGGCGAATCCTTTCAAT+GGG | + | chr1_2:40599114-40599133 | Msa0070320:intron | 50.0% | |
| GGCGAATCCTTTCAATGGGA+TGG | + | chr1_2:40599118-40599137 | Msa0070320:intron | 50.0% | |
| AGCTACCCCATCCCATTGAA+AGG | - | chr1_2:40599128-40599147 | None:intergenic | 50.0% | |
| TCAATGGGATGGGGTAGCTT+TGG | + | chr1_2:40599129-40599148 | Msa0070320:intron | 50.0% | |
| TCGCCGCTGATCTTAGGTTT+AGG | + | chr1_2:40599648-40599667 | Msa0070320:intron | 50.0% | |
| CGCCGCTGATCTTAGGTTTA+GGG | + | chr1_2:40599649-40599668 | Msa0070320:intron | 50.0% | |
| ! | GCGGTTTGACTTCTTGTCCT+CGG | + | chr1_2:40599688-40599707 | Msa0070320:intron | 50.0% |
| !!! | CTCTCTGGCTTTTATGGGTG+GGG | + | chr1_2:40599730-40599749 | Msa0070320:intron | 50.0% |
| CCAGACCTAACTTCCCAAAG+AGG | - | chr1_2:40599761-40599780 | None:intergenic | 50.0% | |
| ! | CCTCTTTGGGAAGTTAGGTC+TGG | + | chr1_2:40599758-40599777 | Msa0070320:intron | 50.0% |
| GTTAGGTCTGGGTTCTTTGC+CGG | + | chr1_2:40599770-40599789 | Msa0070320:intron | 50.0% | |
| TTTGGGGGTCGTGTTTGCTT+GGG | + | chr1_2:40599795-40599814 | Msa0070320:intron | 50.0% | |
| ! | GCCCGTTGTTGCAAGCATTT+TGG | + | chr1_2:40599841-40599860 | Msa0070320:intron | 50.0% |
| GCGATGCCCAACGAAAACAA+CGG | - | chr1_2:40600099-40600118 | None:intergenic | 50.0% | |
| GGGGCATGCAAAACAAAGCA+GGG | - | chr1_2:40600131-40600150 | None:intergenic | 50.0% | |
| ! | AGGGGCATGCAAAACAAAGC+AGG | - | chr1_2:40600132-40600151 | None:intergenic | 50.0% |
| CTACAACGCGGGTACCTATA+AGG | + | chr1_2:40600465-40600484 | Msa0070320:intron | 50.0% | |
| TAAGCTAACCCCATTGGGGA+TGG | + | chr1_2:40600506-40600525 | Msa0070320:intron | 50.0% | |
| CTCTTAGACCATCCCCAATG+GGG | - | chr1_2:40600517-40600536 | None:intergenic | 50.0% | |
| GCTCTTAGACCATCCCCAAT+GGG | - | chr1_2:40600518-40600537 | None:intergenic | 50.0% | |
| AGCTCTTAGACCATCCCCAA+TGG | - | chr1_2:40600519-40600538 | None:intergenic | 50.0% | |
| CCCACGGTTATGTAACAGTG+TGG | - | chr1_2:40600867-40600886 | None:intergenic | 50.0% | |
| CGCGAGGTTAAAAAGGAGCT+CGG | - | chr1_2:40601029-40601048 | None:intergenic | 50.0% | |
| !! | GTTGTTTGAGCACTGGGAAC+CGG | - | chr1_2:40601484-40601503 | None:intergenic | 50.0% |
| GATGTCTAGTAGGAGGACCA+TGG | - | chr1_2:40601570-40601589 | None:intergenic | 50.0% | |
| CCAAGATCAGGAACATCCTC+GGG | - | chr1_2:40601829-40601848 | None:intergenic | 50.0% | |
| TGGTCTCGGTCAAAATTCGC+AGG | + | chr1_2:40601846-40601865 | Msa0070320:CDS | 50.0% | |
| TCATAGCGATCTTCGTGGTG+AGG | + | chr1_2:40601873-40601892 | Msa0070320:CDS | 50.0% | |
| GGTGAGGTCAACGTTTCACA+AGG | + | chr1_2:40601889-40601908 | Msa0070320:CDS | 50.0% | |
| CAGCAAAACCTATGCCTCGG+AGG | - | chr1_2:40599030-40599049 | None:intergenic | 55.0% | |
| ! | CTCCGAGGCATAGGTTTTGC+TGG | + | chr1_2:40599028-40599047 | Msa0070320:intron | 55.0% |
| CGCCAGCAAAACCTATGCCT+CGG | - | chr1_2:40599033-40599052 | None:intergenic | 55.0% | |
| GCAGGGGCGAATCCTTTCAA+TGG | + | chr1_2:40599113-40599132 | Msa0070320:intron | 55.0% | |
| CTAAGATCAGCGGCGAAGCT+AGG | - | chr1_2:40599644-40599663 | None:intergenic | 55.0% | |
| CTAGCTTCGCCGCTGATCTT+AGG | + | chr1_2:40599642-40599661 | Msa0070320:intron | 55.0% | |
| !!! | GGGTTTTTTGTGGCTCTGGG+CGG | + | chr1_2:40599669-40599688 | Msa0070320:intron | 55.0% |
| TCTCCTGGTGGAGTTCTCTC+TGG | + | chr1_2:40599715-40599734 | Msa0070320:intron | 55.0% | |
| AAGCCAGAGAGAACTCCACC+AGG | - | chr1_2:40599721-40599740 | None:intergenic | 55.0% | |
| ! | TGGGTGGGGTATTCCCTCTT+TGG | + | chr1_2:40599744-40599763 | Msa0070320:intron | 55.0% |
| ! | GGGTGGGGTATTCCCTCTTT+GGG | + | chr1_2:40599745-40599764 | Msa0070320:intron | 55.0% |
| TGGGTTCTTTGCCGGCCTTT+GGG | + | chr1_2:40599778-40599797 | Msa0070320:intron | 55.0% | |
| CAAGCAAACACGACCCCCAA+AGG | - | chr1_2:40599796-40599815 | None:intergenic | 55.0% | |
| ! | CTTTGGGGGTCGTGTTTGCT+TGG | + | chr1_2:40599794-40599813 | Msa0070320:intron | 55.0% |
| AAGGAAAACGAAGCTGCCGC+AGG | + | chr1_2:40600964-40600983 | Msa0070320:CDS | 55.0% | |
| TATGGCCAGCTAAACGCCTG+CGG | - | chr1_2:40600983-40601002 | None:intergenic | 55.0% | |
| GGAGAGTTTGGGAAAACGCG+AGG | - | chr1_2:40601045-40601064 | None:intergenic | 55.0% | |
| TCGTAACTGTTTGTCGCCCG+AGG | + | chr1_2:40601810-40601829 | Msa0070320:CDS | 55.0% | |
| CCCGAGGATGTTCCTGATCT+TGG | + | chr1_2:40601826-40601845 | Msa0070320:CDS | 55.0% | |
| CTTGTCCTCGGTCGTTCTCC+TGG | + | chr1_2:40599700-40599719 | Msa0070320:intron | 60.0% | |
| CTGGGTTCTTTGCCGGCCTT+TGG | + | chr1_2:40599777-40599796 | Msa0070320:intron | 60.0% | |
| GGGTTCTTTGCCGGCCTTTG+GGG | + | chr1_2:40599779-40599798 | Msa0070320:intron | 60.0% | |
| GGTTCTTTGCCGGCCTTTGG+GGG | + | chr1_2:40599780-40599799 | Msa0070320:intron | 60.0% | |
| CAAACACGACCCCCAAAGGC+CGG | - | chr1_2:40599792-40599811 | None:intergenic | 60.0% | |
| AACTCCGAGATCAGCCGAGC+CGG | + | chr1_2:40601462-40601481 | Msa0070320:CDS | 60.0% | |
| !! | TTGAGCACTGGGAACCGGCT+CGG | - | chr1_2:40601479-40601498 | None:intergenic | 60.0% |
| GTCCTCGGTCGTTCTCCTGG+TGG | + | chr1_2:40599703-40599722 | Msa0070320:intron | 65.0% | |
| CTCCACCAGGAGAACGACCG+AGG | - | chr1_2:40599708-40599727 | None:intergenic | 65.0% | |
| AGCTGCCGCAGGCGTTTAGC+TGG | + | chr1_2:40600975-40600994 | Msa0070320:CDS | 65.0% | |
| !! | GGAACCGGCTCGGCTGATCT+CGG | - | chr1_2:40601469-40601488 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 40597361 | 40602162 | 40597361 | ID=Msa0070320;Name=Msa0070320 |
| chr1_2 | mRNA | 40597361 | 40602162 | 40597361 | ID=Msa0070320-mRNA-1;Parent=Msa0070320;Name=Msa0070320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.5|1|0.33|0.5|4|226|346 |
| chr1_2 | exon | 40597361 | 40597583 | 40597361 | ID=Msa0070320-mRNA-1:exon:12382;Parent=Msa0070320-mRNA-1 |
| chr1_2 | exon | 40597602 | 40597728 | 40597602 | ID=Msa0070320-mRNA-1:exon:12383;Parent=Msa0070320-mRNA-1 |
| chr1_2 | exon | 40600938 | 40601077 | 40600938 | ID=Msa0070320-mRNA-1:exon:12384;Parent=Msa0070320-mRNA-1 |
| chr1_2 | exon | 40601386 | 40602162 | 40601386 | ID=Msa0070320-mRNA-1:exon:12385;Parent=Msa0070320-mRNA-1 |
| chr1_2 | CDS | 40597361 | 40597583 | 40597361 | ID=Msa0070320-mRNA-1:cds;Parent=Msa0070320-mRNA-1 |
| chr1_2 | CDS | 40597602 | 40597728 | 40597602 | ID=Msa0070320-mRNA-1:cds;Parent=Msa0070320-mRNA-1 |
| chr1_2 | CDS | 40600938 | 40601077 | 40600938 | ID=Msa0070320-mRNA-1:cds;Parent=Msa0070320-mRNA-1 |
| chr1_2 | CDS | 40601386 | 40601936 | 40601386 | ID=Msa0070320-mRNA-1:cds;Parent=Msa0070320-mRNA-1 |
| chr1_2 | three_prime_UTR | 40601937 | 40602162 | 40601937 | ID=Msa0070320-mRNA-1:three_prime_utr;Parent=Msa0070320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
