Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117850 | QOV03070.1 | 96.875 | 352 | 4 | 2 | 1 | 346 | 1 | 351 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117850 | sp|Q700W2|SPL9_ARATH | 44.898 | 245 | 100 | 9 | 23 | 253 | 32 | 255 | 3.75e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117850 | A0A7U3NI82 | 96.875 | 352 | 4 | 2 | 1 | 346 | 1 | 351 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117850 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070320 | Msa0117850 | 0.844335 | 8.056560e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117850 | MtrunA17_Chr1g0175021 | 90.435 | 230 | 21 | 1 | 118 | 346 | 8 | 237 | 8.82e-151 | 424 |
| Msa0117850 | MtrunA17_Chr7g0258471 | 52.226 | 337 | 113 | 11 | 23 | 343 | 91 | 395 | 2.67e-85 | 263 |
| Msa0117850 | MtrunA17_Chr1g0175031 | 85.981 | 107 | 6 | 2 | 17 | 117 | 17 | 120 | 3.69e-50 | 164 |
| Msa0117850 | MtrunA17_Chr3g0122411 | 37.589 | 282 | 133 | 9 | 8 | 270 | 111 | 368 | 1.40e-38 | 142 |
| Msa0117850 | MtrunA17_Chr8g0360361 | 70.667 | 75 | 22 | 0 | 75 | 149 | 69 | 143 | 3.89e-32 | 118 |
| Msa0117850 | MtrunA17_Chr5g0420051 | 66.265 | 83 | 27 | 1 | 76 | 158 | 186 | 267 | 7.14e-32 | 124 |
| Msa0117850 | MtrunA17_Chr7g0231911 | 49.242 | 132 | 50 | 2 | 20 | 144 | 101 | 222 | 1.44e-31 | 120 |
| Msa0117850 | MtrunA17_Chr8g0334671 | 46.309 | 149 | 66 | 3 | 2 | 146 | 124 | 262 | 1.61e-31 | 120 |
| Msa0117850 | MtrunA17_Chr4g0061651 | 74.648 | 71 | 18 | 0 | 76 | 146 | 128 | 198 | 2.58e-31 | 123 |
| Msa0117850 | MtrunA17_Chr3g0132091 | 41.530 | 183 | 80 | 4 | 18 | 178 | 15 | 192 | 1.42e-30 | 119 |
| Msa0117850 | MtrunA17_Chr2g0308321 | 73.239 | 71 | 19 | 0 | 76 | 146 | 176 | 246 | 1.71e-30 | 121 |
| Msa0117850 | MtrunA17_Chr8g0386271 | 56.122 | 98 | 36 | 1 | 76 | 173 | 104 | 194 | 2.06e-30 | 119 |
| Msa0117850 | MtrunA17_Chr4g0046991 | 72.464 | 69 | 19 | 0 | 76 | 144 | 78 | 146 | 3.16e-30 | 112 |
| Msa0117850 | MtrunA17_Chr2g0282521 | 72.464 | 69 | 19 | 0 | 76 | 144 | 69 | 137 | 1.60e-29 | 110 |
| Msa0117850 | MtrunA17_Chr7g0224821 | 55.102 | 98 | 38 | 1 | 76 | 173 | 82 | 173 | 9.17e-29 | 114 |
| Msa0117850 | MtrunA17_Chr2g0302791 | 63.636 | 77 | 28 | 0 | 76 | 152 | 144 | 220 | 1.08e-27 | 114 |
| Msa0117850 | MtrunA17_Chr1g0162871 | 56.863 | 102 | 41 | 1 | 57 | 158 | 93 | 191 | 4.10e-27 | 112 |
| Msa0117850 | MtrunA17_Chr8g0377401 | 46.094 | 128 | 54 | 2 | 16 | 143 | 122 | 234 | 9.96e-27 | 106 |
| Msa0117850 | MtrunA17_Chr7g0270541 | 68.116 | 69 | 22 | 0 | 76 | 144 | 150 | 218 | 3.77e-26 | 109 |
| Msa0117850 | MtrunA17_Chr1g0194121 | 69.565 | 69 | 21 | 0 | 76 | 144 | 152 | 220 | 5.28e-26 | 109 |
| Msa0117850 | MtrunA17_Chr8g0377421 | 62.319 | 69 | 26 | 0 | 76 | 144 | 137 | 205 | 2.07e-23 | 98.6 |
| Msa0117850 | MtrunA17_Chr2g0286661 | 52.113 | 71 | 34 | 0 | 74 | 144 | 106 | 176 | 6.10e-20 | 91.3 |
| Msa0117850 | MtrunA17_Chr2g0317041 | 59.574 | 47 | 19 | 0 | 76 | 122 | 104 | 150 | 1.42e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117850 | AT2G42200.1 | 44.898 | 245 | 100 | 9 | 23 | 253 | 32 | 255 | 3.81e-49 | 169 |
| Msa0117850 | AT3G57920.1 | 42.322 | 267 | 112 | 8 | 23 | 279 | 27 | 261 | 9.69e-48 | 165 |
| Msa0117850 | AT3G15270.1 | 67.105 | 76 | 25 | 0 | 75 | 150 | 67 | 142 | 6.88e-32 | 118 |
| Msa0117850 | AT2G33810.1 | 72.464 | 69 | 19 | 0 | 76 | 144 | 59 | 127 | 2.68e-31 | 115 |
| Msa0117850 | AT1G69170.1 | 62.245 | 98 | 34 | 2 | 76 | 173 | 129 | 223 | 1.15e-30 | 120 |
| Msa0117850 | AT1G53160.3 | 67.105 | 76 | 25 | 0 | 74 | 149 | 57 | 132 | 4.75e-30 | 113 |
| Msa0117850 | AT1G53160.2 | 71.429 | 70 | 20 | 0 | 75 | 144 | 58 | 127 | 7.92e-30 | 112 |
| Msa0117850 | AT1G53160.1 | 71.429 | 70 | 20 | 0 | 75 | 144 | 58 | 127 | 7.92e-30 | 112 |
| Msa0117850 | AT5G43270.3 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 1.07e-29 | 118 |
| Msa0117850 | AT5G43270.1 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 1.07e-29 | 118 |
| Msa0117850 | AT5G43270.2 | 50.000 | 136 | 49 | 3 | 22 | 147 | 119 | 245 | 1.07e-29 | 118 |
| Msa0117850 | AT1G27370.6 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 9.24e-29 | 114 |
| Msa0117850 | AT2G47070.1 | 70.833 | 72 | 21 | 0 | 76 | 147 | 111 | 182 | 1.23e-28 | 117 |
| Msa0117850 | AT1G02065.1 | 48.387 | 124 | 53 | 2 | 22 | 144 | 148 | 261 | 1.28e-28 | 113 |
| Msa0117850 | AT1G20980.1 | 46.763 | 139 | 67 | 3 | 70 | 201 | 114 | 252 | 1.69e-28 | 117 |
| Msa0117850 | AT1G27370.1 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT1G27370.5 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT1G27370.3 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT1G27370.2 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT1G27370.4 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT1G27370.7 | 41.975 | 162 | 69 | 4 | 13 | 164 | 117 | 263 | 2.64e-28 | 114 |
| Msa0117850 | AT3G60030.1 | 65.333 | 75 | 26 | 0 | 76 | 150 | 132 | 206 | 3.82e-28 | 115 |
| Msa0117850 | AT1G27360.2 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.19e-28 | 112 |
| Msa0117850 | AT1G27360.1 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.19e-28 | 112 |
| Msa0117850 | AT1G27360.3 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.19e-28 | 112 |
| Msa0117850 | AT1G27360.4 | 69.014 | 71 | 22 | 0 | 76 | 146 | 180 | 250 | 6.19e-28 | 112 |
| Msa0117850 | AT1G76580.2 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.76e-27 | 114 |
| Msa0117850 | AT1G76580.3 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.89e-27 | 114 |
| Msa0117850 | AT1G76580.1 | 61.905 | 84 | 27 | 1 | 72 | 150 | 110 | 193 | 1.93e-27 | 114 |
| Msa0117850 | AT5G50570.1 | 34.962 | 266 | 135 | 10 | 15 | 248 | 36 | 295 | 7.96e-26 | 106 |
| Msa0117850 | AT5G50570.2 | 34.962 | 266 | 135 | 10 | 15 | 248 | 36 | 295 | 7.96e-26 | 106 |
| Msa0117850 | AT5G50670.1 | 34.962 | 266 | 135 | 10 | 15 | 248 | 36 | 295 | 7.96e-26 | 106 |
| Msa0117850 | AT5G50670.2 | 34.962 | 266 | 135 | 10 | 15 | 248 | 36 | 295 | 7.96e-26 | 106 |
| Msa0117850 | AT2G47070.2 | 75.472 | 53 | 13 | 0 | 95 | 147 | 1 | 53 | 2.57e-20 | 92.8 |
| Msa0117850 | AT5G18830.2 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 9.96e-20 | 90.9 |
| Msa0117850 | AT5G18830.3 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.14e-19 | 90.9 |
| Msa0117850 | AT5G18830.1 | 53.425 | 73 | 33 | 1 | 74 | 145 | 141 | 213 | 1.15e-19 | 90.9 |
| Msa0117850 | AT1G02065.2 | 41.176 | 102 | 41 | 2 | 22 | 118 | 148 | 235 | 5.17e-14 | 71.2 |
Find 85 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTCTGTTGTTGTTTC+TGG | 0.016193 | 1_3:-39784352 | Msa0117850:CDS |
| TTCAAACAAATGCTTCTTCT+TGG | 0.204356 | 1_3:-39780227 | Msa0117850:CDS |
| TCATTGTAGTTATCCATTAT+TGG | 0.242355 | 1_3:+39780402 | None:intergenic |
| CTTTCAGGCATTATTTGTTT+TGG | 0.242801 | 1_3:-39779905 | Msa0117850:three_prime_UTR |
| GCTTTCTCCGCCTTTCATTA+TGG | 0.263953 | 1_3:+39780991 | None:intergenic |
| CGTTTCCCTTGATCAAATTC+AGG | 0.267407 | 1_3:+39781038 | None:intergenic |
| ATTTGTTTGAAGTTGATAAT+TGG | 0.275585 | 1_3:+39780239 | None:intergenic |
| TTCTGTTGTTGTTTCTGGTT+TGG | 0.298755 | 1_3:-39784347 | Msa0117850:CDS |
| CCCGAGGATGTTCCTGATCT+TGG | 0.303604 | 1_3:-39780168 | Msa0117850:CDS |
| TCATCTACCGAGTTTCTTGA+TGG | 0.335549 | 1_3:-39784622 | Msa0117850:CDS |
| CCACCAACACCAACAGCATT+AGG | 0.337043 | 1_3:+39784526 | None:intergenic |
| TTTCTTGATGGATTAAAGTT+TGG | 0.342712 | 1_3:-39784610 | Msa0117850:CDS |
| TACTAGACATCCTCCAATAA+TGG | 0.345407 | 1_3:-39780415 | Msa0117850:CDS |
| CTGGCACCACCAATGAGTTC+AGG | 0.359216 | 1_3:-39784676 | None:intergenic |
| AAGGTAGAAGAGGAGAGTTT+TGG | 0.360482 | 1_3:+39780936 | None:intergenic |
| CACAAGGCAAGAACCATTAC+TGG | 0.360782 | 1_3:-39780089 | Msa0117850:CDS |
| AAACTCTCCTCTTCTACCTT+TGG | 0.370179 | 1_3:-39780933 | Msa0117850:intron |
| CCTAATGCTGTTGGTGTTGG+TGG | 0.385726 | 1_3:-39784526 | Msa0117850:CDS |
| AACAACTTGTTGAATTTCAA+TGG | 0.386985 | 1_3:-39780294 | Msa0117850:CDS |
| GTCATTTGTGAAATTATAAC+TGG | 0.390812 | 1_3:-39780043 | Msa0117850:three_prime_UTR |
| TCTTCATCATCTTCATCATC+AGG | 0.401033 | 1_3:-39784490 | Msa0117850:CDS |
| GAAATTATAACTGGTGGTAT+TGG | 0.405660 | 1_3:-39780034 | Msa0117850:three_prime_UTR |
| CATGGAAGTTTGTTCCTTGT+AGG | 0.408815 | 1_3:+39780445 | None:intergenic |
| TTGTTTCTGGTTTGGAGCAA+AGG | 0.417760 | 1_3:-39784339 | Msa0117850:CDS |
| TGTTTCTAGAGTACCATGTT+TGG | 0.425256 | 1_3:+39780340 | None:intergenic |
| CAGCTTCCTGAATTTGATCA+AGG | 0.441323 | 1_3:-39781044 | Msa0117850:CDS |
| TTTGTTTGAAGTTGATAATT+GGG | 0.443503 | 1_3:+39780240 | None:intergenic |
| AGAAACTCGGTAGATGAGTT+AGG | 0.444243 | 1_3:+39784628 | None:intergenic |
| GATGAGTTAGGTTGTGAAGA+GGG | 0.463824 | 1_3:+39784640 | None:intergenic |
| GTTGTTTGAGCACTGGGAAC+CGG | 0.465176 | 1_3:+39780513 | None:intergenic |
| GTTTGTTTCAACTTATGAGC+AGG | 0.471293 | 1_3:-39779948 | Msa0117850:three_prime_UTR |
| AGTTGCCGCAGGCGACTAGC+TGG | 0.499072 | 1_3:-39781014 | Msa0117850:CDS |
| GATGTTCCTGATCTTGGTCT+CGG | 0.501086 | 1_3:-39780162 | Msa0117850:CDS |
| ATTATTGGAGGATGTCTAGT+AGG | 0.503531 | 1_3:+39780417 | None:intergenic |
| GGAACCGGCTCGGCTGATCT+CGG | 0.510225 | 1_3:+39780528 | None:intergenic |
| AAATTGTGTTGTTTGAGCAC+TGG | 0.511683 | 1_3:+39780506 | None:intergenic |
| AATTCCGAGATCAGCCGAGC+CGG | 0.516665 | 1_3:-39780532 | Msa0117850:CDS |
| GGTACAAAACCTGAACTCAT+TGG | 0.518582 | 1_3:+39784667 | None:intergenic |
| TCGTAACTGTTTGTCGCCCG+AGG | 0.521144 | 1_3:-39780184 | Msa0117850:CDS |
| CAAAGGTAATAACTTTCTGA+TGG | 0.523398 | 1_3:-39780598 | Msa0117850:CDS |
| ACCAAGATCAGGAACATCCT+CGG | 0.523631 | 1_3:+39780167 | None:intergenic |
| AATTGTGTTGTTTGAGCACT+GGG | 0.525172 | 1_3:+39780507 | None:intergenic |
| CCAAGATCAGGAACATCCTC+GGG | 0.531635 | 1_3:+39780168 | None:intergenic |
| GACTAGCTGGCCATAATGAA+AGG | 0.532987 | 1_3:-39781001 | Msa0117850:CDS |
| CAAATCAAACCTAATGCTGT+TGG | 0.533702 | 1_3:-39784535 | Msa0117850:CDS |
| AGCAAACAAGAGTATTAAAG+TGG | 0.540068 | 1_3:+39780066 | None:intergenic |
| TCTGTGTCAACAGATAATAA+TGG | 0.540600 | 1_3:-39780621 | Msa0117850:intron |
| CTCTTCTGTCAAACCAAACA+TGG | 0.546120 | 1_3:-39780353 | Msa0117850:CDS |
| AGTAGATCTGAGTGGTGCTA+AGG | 0.546255 | 1_3:-39784416 | Msa0117850:CDS |
| AGTATTAAAGTGGCCAGTAA+TGG | 0.550747 | 1_3:+39780076 | None:intergenic |
| TTGGCCTATGTGAACAATGT+GGG | 0.552994 | 1_3:-39779886 | Msa0117850:three_prime_UTR |
| TTGAGCACTGGGAACCGGCT+CGG | 0.557428 | 1_3:+39780518 | None:intergenic |
| AGATGAGTTAGGTTGTGAAG+AGG | 0.562239 | 1_3:+39784639 | None:intergenic |
| CTCAAACAACACAATTTACC+TGG | 0.562586 | 1_3:-39780500 | Msa0117850:CDS |
| CTACAAGGAACAAACTTCCA+TGG | 0.563190 | 1_3:-39780444 | Msa0117850:CDS |
| TTCATCATCAGGAATGAAGA+GGG | 0.564365 | 1_3:-39784479 | Msa0117850:CDS |
| AAACCAGAAACAACAACAGA+AGG | 0.564585 | 1_3:+39784349 | None:intergenic |
| TGGTCTCGGTCAAAATTCGC+AGG | 0.566753 | 1_3:-39780148 | Msa0117850:CDS |
| TCAACAGATAATAATGGCAA+AGG | 0.567701 | 1_3:-39780615 | Msa0117850:intron |
| TTTCTAACCAAAGGTAGAAG+AGG | 0.568592 | 1_3:+39780926 | None:intergenic |
| AAGTTGAAACAAACAAAAGC+AGG | 0.570923 | 1_3:+39779957 | None:intergenic |
| AGCTTCCTGAATTTGATCAA+GGG | 0.572503 | 1_3:-39781043 | Msa0117850:CDS |
| TTAGGTTGTGAAGAGGGAGA+AGG | 0.574494 | 1_3:+39784646 | None:intergenic |
| CTTTAATCCATCAAGAAACT+CGG | 0.578305 | 1_3:+39784615 | None:intergenic |
| GCTATTCATAGCGATCTTCG+TGG | 0.587187 | 1_3:-39780126 | Msa0117850:CDS |
| AAGGGAAACGAAGTTGCCGC+AGG | 0.588964 | 1_3:-39781025 | Msa0117850:CDS |
| TTGTAGTTATCCATTATTGG+AGG | 0.589950 | 1_3:+39780405 | None:intergenic |
| AAACCTAATGCTGTTGGTGT+TGG | 0.593485 | 1_3:-39784529 | Msa0117850:CDS |
| TATGTGAAACTTTCAGACAT+GGG | 0.598364 | 1_3:-39779852 | None:intergenic |
| CTTCATCATCAGGAATGAAG+AGG | 0.604436 | 1_3:-39784480 | Msa0117850:CDS |
| GTATGTGAAACTTTCAGACA+TGG | 0.604908 | 1_3:-39779853 | None:intergenic |
| ATTGGAGGATGTCTAGTAGG+AGG | 0.622162 | 1_3:+39780420 | None:intergenic |
| AAGTTGTTCATCTCAACACT+TGG | 0.626493 | 1_3:+39780309 | None:intergenic |
| TTTGGCCTATGTGAACAATG+TGG | 0.627820 | 1_3:-39779887 | Msa0117850:three_prime_UTR |
| GGTGAGGTCAACGTTTCACA+AGG | 0.632696 | 1_3:-39780105 | Msa0117850:CDS |
| CATGTGACCTGCTACACTGT+TGG | 0.632750 | 1_3:+39784311 | None:intergenic |
| TCAACCCACATTGTTCACAT+AGG | 0.637989 | 1_3:+39779882 | None:intergenic |
| TCATAGCGATCTTCGTGGTG+AGG | 0.646398 | 1_3:-39780121 | Msa0117850:CDS |
| TATGGCCAGCTAGTCGCCTG+CGG | 0.649873 | 1_3:+39781009 | None:intergenic |
| ATTTGTGAAATTATAACTGG+TGG | 0.659707 | 1_3:-39780040 | Msa0117850:three_prime_UTR |
| ATGTGAAACTTTCAGACATG+GGG | 0.660576 | 1_3:-39779851 | None:intergenic |
| GATGTCTAGTAGGAGGACCA+TGG | 0.664660 | 1_3:+39780427 | None:intergenic |
| TCATCATCAGGAATGAAGAG+GGG | 0.691128 | 1_3:-39784478 | Msa0117850:CDS |
| TAGCTGGCCATAATGAAAGG+CGG | 0.700178 | 1_3:-39780998 | Msa0117850:CDS |
| GGTTGTAAAGTAGATCTGAG+TGG | 0.784110 | 1_3:-39784424 | Msa0117850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATATATATTGTTTGT+TGG | - | chr1_3:39780420-39780439 | Msa0117850:CDS | 10.0% |
| !!! | ATTTTCTATTTCAATTTAAA+AGG | - | chr1_3:39781010-39781029 | Msa0117850:CDS | 10.0% |
| !! | AAATATCTTTAAATTTCAAT+TGG | + | chr1_3:39781084-39781103 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTGTTTAAATAA+AGG | + | chr1_3:39781917-39781936 | None:intergenic | 10.0% |
| !!! | ATTTTTTGCTATTAATAAAT+AGG | - | chr1_3:39782124-39782143 | Msa0117850:intron | 10.0% |
| !!! | TTTTTTGCTATTAATAAATA+GGG | - | chr1_3:39782125-39782144 | Msa0117850:intron | 10.0% |
| !! | CTTTGATAAAATAAATAAAA+AGG | + | chr1_3:39783665-39783684 | None:intergenic | 10.0% |
| !!! | ATGAATAAATTTTATTACTT+TGG | + | chr1_3:39783747-39783766 | None:intergenic | 10.0% |
| !!! | ATAAAATTTATTCATTTTCT+TGG | - | chr1_3:39783752-39783771 | Msa0117850:intron | 10.0% |
| !!! | ATTTTATTATTCTACAAATA+AGG | + | chr1_3:39783870-39783889 | None:intergenic | 10.0% |
| !! | AATTATAAACAAAAGTAGAA+TGG | + | chr1_3:39780256-39780275 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAACACTAAAAA+AGG | + | chr1_3:39780302-39780321 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTCTTTCTATAA+TGG | - | chr1_3:39780309-39780328 | Msa0117850:CDS | 15.0% |
| !!! | GTTTTTTTTCTTTCTATAAT+GGG | - | chr1_3:39780310-39780329 | Msa0117850:CDS | 15.0% |
| !! | ATTTCATTTGAATTTGATAA+TGG | - | chr1_3:39780507-39780526 | Msa0117850:CDS | 15.0% |
| !!! | ATAATTTGTAAATGTATGTT+TGG | - | chr1_3:39781047-39781066 | Msa0117850:CDS | 15.0% |
| !!! | ATGTTTCAAATAAATGTTTT+GGG | - | chr1_3:39781380-39781399 | Msa0117850:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1_3:39782609-39782628 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1_3:39782608-39782627 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr1_3:39782517-39782536 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr1_3:39782417-39782436 | Msa0117850:intron | 15.0% |
| !! | ATGATATAAAGTTATTAGTA+AGG | + | chr1_3:39782816-39782835 | None:intergenic | 15.0% |
| !! | TCTCCATATATATAAAAATT+TGG | + | chr1_3:39783247-39783266 | None:intergenic | 15.0% |
| !!! | AATTTTTATATATATGGAGA+AGG | - | chr1_3:39783247-39783266 | Msa0117850:intron | 15.0% |
| !! | CTAAATAAATAACACTTAAA+TGG | + | chr1_3:39783633-39783652 | None:intergenic | 15.0% |
| !!! | ATTTTATCAAAGTTCAAATA+AGG | - | chr1_3:39783673-39783692 | Msa0117850:intron | 15.0% |
| !! | AATGAAATGATTAATAGTTA+AGG | - | chr1_3:39783699-39783718 | Msa0117850:intron | 15.0% |
| !! | ATGAAATGATTAATAGTTAA+GGG | - | chr1_3:39783700-39783719 | Msa0117850:intron | 15.0% |
| !! | TAAAAAAGACAAAATGAGTT+AGG | + | chr1_3:39780371-39780390 | None:intergenic | 20.0% |
| !! | TTCCTAGTAAAAATAAATGT+AGG | + | chr1_3:39780611-39780630 | None:intergenic | 20.0% |
| !!! | TCATAAAATTCTGAAATTTC+AGG | + | chr1_3:39780682-39780701 | None:intergenic | 20.0% |
| !! | TCCAAATTTCAAAGAAAAAA+TGG | - | chr1_3:39780714-39780733 | Msa0117850:intron | 20.0% |
| !!! | ACCATTTTTTCTTTGAAATT+TGG | + | chr1_3:39780718-39780737 | None:intergenic | 20.0% |
| !! | TATTTCAATTTAAAAGGCTT+TGG | - | chr1_3:39781016-39781035 | Msa0117850:CDS | 20.0% |
| !!! | CATTACATACCAAATATTTT+AGG | - | chr1_3:39781244-39781263 | Msa0117850:intron | 20.0% |
| !!! | CATGTTTCAAATAAATGTTT+TGG | - | chr1_3:39781379-39781398 | Msa0117850:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr1_3:39782546-39782565 | Msa0117850:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr1_3:39782547-39782566 | Msa0117850:intron | 20.0% |
| !!! | GAGCCAAATTTTTATATATA+TGG | - | chr1_3:39783241-39783260 | Msa0117850:intron | 20.0% |
| !! | AATAACTACGACATTTAAAA+AGG | - | chr1_3:39783783-39783802 | Msa0117850:intron | 20.0% |
| !! | ATAACTACGACATTTAAAAA+GGG | - | chr1_3:39783784-39783803 | Msa0117850:intron | 20.0% |
| !! | AAGCTGAAAACATAAATATT+TGG | + | chr1_3:39783839-39783858 | None:intergenic | 20.0% |
| !! | TGTAGAATAATAAAATTGCT+TGG | - | chr1_3:39783874-39783893 | Msa0117850:intron | 20.0% |
| !! | TTCATACCAAAAAATTTCTA+TGG | - | chr1_3:39783950-39783969 | Msa0117850:intron | 20.0% |
| !! | TCATACCAAAAAATTTCTAT+GGG | - | chr1_3:39783951-39783970 | Msa0117850:intron | 20.0% |
| !!! | TTTGTTTGAAGTTGATAATT+GGG | + | chr1_3:39784281-39784300 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGAAGTTGATAAT+TGG | + | chr1_3:39784282-39784301 | None:intergenic | 20.0% |
| !!! | TACTAGTGCTTATTTTATTT+TGG | - | chr1_3:39784527-39784546 | Msa0117850:CDS | 20.0% |
| !!! | CTTATTTTATTTTGGAACTT+TGG | - | chr1_3:39784535-39784554 | Msa0117850:CDS | 20.0% |
| !!! | TTTCTTGATGGATTAAAGTT+TGG | - | chr1_3:39779908-39779927 | Msa0117850:three_prime_UTR | 25.0% |
| !!! | TTTTCTTTCTATAATGGGTA+TGG | - | chr1_3:39780315-39780334 | Msa0117850:CDS | 25.0% |
| ! | ATAGATTTCTTAGATGTTGT+TGG | - | chr1_3:39780473-39780492 | Msa0117850:CDS | 25.0% |
| ! | TCCTAATGTTCTTCTATTAT+TGG | - | chr1_3:39780544-39780563 | Msa0117850:CDS | 25.0% |
| ! | TCCAATAATAGAAGAACATT+AGG | + | chr1_3:39780548-39780567 | None:intergenic | 25.0% |
| !!! | TGCCTACATTTATTTTTACT+AGG | - | chr1_3:39780606-39780625 | Msa0117850:CDS | 25.0% |
| !!! | TCTTTGAAATTTGGAAAGAA+TGG | + | chr1_3:39780709-39780728 | None:intergenic | 25.0% |
| !! | TAATAAATAACTTGCCATGT+GGG | + | chr1_3:39780790-39780809 | None:intergenic | 25.0% |
| !! | TTAATAAATAACTTGCCATG+TGG | + | chr1_3:39780791-39780810 | None:intergenic | 25.0% |
| !!! | CAACATCTTACACTTTTTTT+GGG | + | chr1_3:39781110-39781129 | None:intergenic | 25.0% |
| !!! | ACAACATCTTACACTTTTTT+TGG | + | chr1_3:39781111-39781130 | None:intergenic | 25.0% |
| !!! | AGTGTAAGATGTTGTTTTAT+TGG | - | chr1_3:39781116-39781135 | Msa0117850:intron | 25.0% |
| !! | TGGATAATTTGTGATTACTT+AGG | - | chr1_3:39781136-39781155 | Msa0117850:intron | 25.0% |
| ! | ATTTGTGATTACTTAGGAAA+AGG | - | chr1_3:39781142-39781161 | Msa0117850:intron | 25.0% |
| ! | TTTGAAAAGGCAAATGTATT+TGG | - | chr1_3:39781215-39781234 | Msa0117850:intron | 25.0% |
| ! | AGTTGAAGTCCTAAAATATT+TGG | + | chr1_3:39781256-39781275 | None:intergenic | 25.0% |
| !!! | TCTTCTTTCTTTGTTGTTTT+AGG | - | chr1_3:39781326-39781345 | Msa0117850:intron | 25.0% |
| ! | TATACTAAAGATGATGCTTA+TGG | - | chr1_3:39781435-39781454 | Msa0117850:intron | 25.0% |
| ! | ATACTAAAGATGATGCTTAT+GGG | - | chr1_3:39781436-39781455 | Msa0117850:intron | 25.0% |
| ! | TGAATTACATCTTAGGTTTA+GGG | - | chr1_3:39781591-39781610 | Msa0117850:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr1_3:39782259-39782278 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr1_3:39782260-39782279 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr1_3:39782580-39782599 | Msa0117850:intron | 25.0% |
| ! | GAATATTTGCTTATTGTTGT+CGG | - | chr1_3:39782722-39782741 | Msa0117850:intron | 25.0% |
| !!! | CAATGAAGGATTTTAGTTTT+TGG | - | chr1_3:39782764-39782783 | Msa0117850:intron | 25.0% |
| !!! | TTTAGTTTTTGGTGCTTAAA+TGG | - | chr1_3:39782775-39782794 | Msa0117850:intron | 25.0% |
| !!! | TTAGTTTTTGGTGCTTAAAT+GGG | - | chr1_3:39782776-39782795 | Msa0117850:intron | 25.0% |
| ! | TATAAGAATTGGTACCTTAT+AGG | + | chr1_3:39782972-39782991 | None:intergenic | 25.0% |
| ! | TAGCTTATCTCTATAAGAAT+TGG | + | chr1_3:39782983-39783002 | None:intergenic | 25.0% |
| ! | ATTAAGAAATTGAAATGCAG+GGG | + | chr1_3:39783162-39783181 | None:intergenic | 25.0% |
| ! | CATTAAGAAATTGAAATGCA+GGG | + | chr1_3:39783163-39783182 | None:intergenic | 25.0% |
| ! | TCATTAAGAAATTGAAATGC+AGG | + | chr1_3:39783164-39783183 | None:intergenic | 25.0% |
| !! | TTTTTAAACTCAAACTGACT+TGG | + | chr1_3:39783305-39783324 | None:intergenic | 25.0% |
| ! | AAGGAATAATTTCTAACCAA+AGG | + | chr1_3:39783604-39783623 | None:intergenic | 25.0% |
| ! | AACACTTAAATGGTAACAAA+AGG | + | chr1_3:39783623-39783642 | None:intergenic | 25.0% |
| !!! | CATTTCCCATAGAAATTTTT+TGG | + | chr1_3:39783959-39783978 | None:intergenic | 25.0% |
| ! | TCATTGTAGTTATCCATTAT+TGG | + | chr1_3:39784119-39784138 | None:intergenic | 25.0% |
| !!! | AACAACTTGTTGAATTTCAA+TGG | - | chr1_3:39784224-39784243 | Msa0117850:intron | 25.0% |
| ! | GTCATTTGTGAAATTATAAC+TGG | - | chr1_3:39784475-39784494 | Msa0117850:CDS | 25.0% |
| ! | ATTTGTGAAATTATAACTGG+TGG | - | chr1_3:39784478-39784497 | Msa0117850:CDS | 25.0% |
| CTTTAATCCATCAAGAAACT+CGG | + | chr1_3:39779906-39779925 | None:intergenic | 30.0% | |
| TGGTCAAAAAATCTACTTTG+AGG | - | chr1_3:39779928-39779947 | Msa0117850:three_prime_UTR | 30.0% | |
| ! | ACATGCTTTTATGCAAATGA+TGG | - | chr1_3:39780641-39780660 | Msa0117850:intron | 30.0% |
| TATTCATTCACCATTATACC+TGG | - | chr1_3:39780834-39780853 | Msa0117850:intron | 30.0% | |
| TCTTAATGAAGGATAAGCAT+GGG | - | chr1_3:39780925-39780944 | Msa0117850:intron | 30.0% | |
| ! | TTTAAAAGGCTTTGGTTGAT+TGG | - | chr1_3:39781024-39781043 | Msa0117850:CDS | 30.0% |
| ! | AGCGAACTAAAGTTTTTATC+AGG | - | chr1_3:39781182-39781201 | Msa0117850:intron | 30.0% |
| !! | AGGAAGTGTAGATTTTGAAA+AGG | - | chr1_3:39781202-39781221 | Msa0117850:intron | 30.0% |
| AGTAAGAGAGTGAAGTTTAT+TGG | - | chr1_3:39781464-39781483 | Msa0117850:intron | 30.0% | |
| ! | TTTTGTATATTAAACCTCCG+AGG | - | chr1_3:39781506-39781525 | Msa0117850:intron | 30.0% |
| GTGAATTACATCTTAGGTTT+AGG | - | chr1_3:39781590-39781609 | Msa0117850:intron | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_3:39782640-39782659 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_3:39782639-39782658 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | chr1_3:39782322-39782341 | Msa0117850:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr1_3:39782579-39782598 | Msa0117850:intron | 30.0% | |
| AAGTAGAGACTAAACTTACA+AGG | - | chr1_3:39782624-39782643 | Msa0117850:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_3:39782639-39782658 | Msa0117850:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_3:39782640-39782659 | Msa0117850:intron | 30.0% |
| CTTATGAAAAAGTTAGACGT+AGG | + | chr1_3:39783192-39783211 | None:intergenic | 30.0% | |
| !!! | CTTTTTCATAAGCATCGATA+AGG | - | chr1_3:39783200-39783219 | Msa0117850:intron | 30.0% |
| TCTGTGTCAACAGATAATAA+TGG | - | chr1_3:39783897-39783916 | Msa0117850:intron | 30.0% | |
| TCAACAGATAATAATGGCAA+AGG | - | chr1_3:39783903-39783922 | Msa0117850:intron | 30.0% | |
| CAAAGGTAATAACTTTCTGA+TGG | - | chr1_3:39783920-39783939 | Msa0117850:intron | 30.0% | |
| TTGTAGTTATCCATTATTGG+AGG | + | chr1_3:39784116-39784135 | None:intergenic | 30.0% | |
| TTCAAACAAATGCTTCTTCT+TGG | - | chr1_3:39784291-39784310 | Msa0117850:intron | 30.0% | |
| !! | TGCTTCTTCTTGGTTTTTAA+AGG | - | chr1_3:39784301-39784320 | Msa0117850:intron | 30.0% |
| !! | GCTTCTTCTTGGTTTTTAAA+GGG | - | chr1_3:39784302-39784321 | Msa0117850:intron | 30.0% |
| !! | AGCAAACAAGAGTATTAAAG+TGG | + | chr1_3:39784455-39784474 | None:intergenic | 30.0% |
| GAAATTATAACTGGTGGTAT+TGG | - | chr1_3:39784484-39784503 | Msa0117850:CDS | 30.0% | |
| AAGTTGAAACAAACAAAAGC+AGG | + | chr1_3:39784564-39784583 | None:intergenic | 30.0% | |
| ! | TATCATTTTGTGGAACTTTC+AGG | - | chr1_3:39784598-39784617 | Msa0117850:CDS | 30.0% |
| ! | CTTTCAGGCATTATTTGTTT+TGG | - | chr1_3:39784613-39784632 | Msa0117850:CDS | 30.0% |
| CAAATCAAACCTAATGCTGT+TGG | - | chr1_3:39779983-39780002 | Msa0117850:three_prime_UTR | 35.0% | |
| TCTTCATCATCTTCATCATC+AGG | - | chr1_3:39780028-39780047 | Msa0117850:three_prime_UTR | 35.0% | |
| TTCATCATCAGGAATGAAGA+GGG | - | chr1_3:39780039-39780058 | Msa0117850:three_prime_UTR | 35.0% | |
| AAACCAGAAACAACAACAGA+AGG | + | chr1_3:39780172-39780191 | None:intergenic | 35.0% | |
| !! | TTCTGTTGTTGTTTCTGGTT+TGG | - | chr1_3:39780171-39780190 | Msa0117850:CDS | 35.0% |
| !! | TTTCTATAATGGGTATGGTC+TGG | - | chr1_3:39780320-39780339 | Msa0117850:CDS | 35.0% |
| ATGAGTTAGGCAAAACAAGA+AGG | + | chr1_3:39780358-39780377 | None:intergenic | 35.0% | |
| GTTCTTCTATTATTGGAGAC+TGG | - | chr1_3:39780551-39780570 | Msa0117850:CDS | 35.0% | |
| ATTGACATCAACTTCTCAAG+GGG | + | chr1_3:39780742-39780761 | None:intergenic | 35.0% | |
| GATTGACATCAACTTCTCAA+GGG | + | chr1_3:39780743-39780762 | None:intergenic | 35.0% | |
| AGATTGACATCAACTTCTCA+AGG | + | chr1_3:39780744-39780763 | None:intergenic | 35.0% | |
| GTAGAAAAAATGATCCCACA+TGG | - | chr1_3:39780773-39780792 | Msa0117850:intron | 35.0% | |
| AAAGGTTCTTCCAGGTATAA+TGG | + | chr1_3:39780847-39780866 | None:intergenic | 35.0% | |
| TAAAGCTAAAAGGTTCTTCC+AGG | + | chr1_3:39780855-39780874 | None:intergenic | 35.0% | |
| GTCTTAATGAAGGATAAGCA+TGG | - | chr1_3:39780924-39780943 | Msa0117850:intron | 35.0% | |
| GATGTAATTCACACATCCTT+TGG | + | chr1_3:39781582-39781601 | None:intergenic | 35.0% | |
| GGATGTGTGAATTACATCTT+AGG | - | chr1_3:39781584-39781603 | Msa0117850:intron | 35.0% | |
| !!! | CTTAGGTTTAGGGTTTTTTG+TGG | - | chr1_3:39781601-39781620 | Msa0117850:intron | 35.0% |
| !! | GTGTTGTTGTTCTTGTTGTT+CGG | - | chr1_3:39781761-39781780 | Msa0117850:intron | 35.0% |
| ACATCACTTGTGTGACATTA+TGG | - | chr1_3:39781844-39781863 | Msa0117850:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr1_3:39782182-39782201 | None:intergenic | 35.0% | |
| ATATGAGATCCTCTTCTCAA+TGG | - | chr1_3:39782914-39782933 | Msa0117850:intron | 35.0% | |
| TATGAGATCCTCTTCTCAAT+GGG | - | chr1_3:39782915-39782934 | Msa0117850:intron | 35.0% | |
| CGTTGTAGACATATCCATAA+TGG | + | chr1_3:39782943-39782962 | None:intergenic | 35.0% | |
| GGGGTTAATTTCTATATGTG+TGG | + | chr1_3:39783143-39783162 | None:intergenic | 35.0% | |
| !!! | ATAAGCATCGATAAGGCTTT+TGG | - | chr1_3:39783207-39783226 | Msa0117850:intron | 35.0% |
| ! | GAGAAGGTCTTATGAATTAG+AGG | - | chr1_3:39783263-39783282 | Msa0117850:intron | 35.0% |
| TTGAGATAAAAACGATCCCA+CGG | + | chr1_3:39783412-39783431 | None:intergenic | 35.0% | |
| AGCTTCCTGAATTTGATCAA+GGG | - | chr1_3:39783475-39783494 | Msa0117850:intron | 35.0% | |
| TTTCTAACCAAAGGTAGAAG+AGG | + | chr1_3:39783595-39783614 | None:intergenic | 35.0% | |
| !! | AATTGTGTTGTTTGAGCACT+GGG | + | chr1_3:39784014-39784033 | None:intergenic | 35.0% |
| !! | AAATTGTGTTGTTTGAGCAC+TGG | + | chr1_3:39784015-39784034 | None:intergenic | 35.0% |
| CTCAAACAACACAATTTACC+TGG | - | chr1_3:39784018-39784037 | Msa0117850:intron | 35.0% | |
| ATTATTGGAGGATGTCTAGT+AGG | + | chr1_3:39784104-39784123 | None:intergenic | 35.0% | |
| TACTAGACATCCTCCAATAA+TGG | - | chr1_3:39784103-39784122 | Msa0117850:intron | 35.0% | |
| !! | TGTTTCTAGAGTACCATGTT+TGG | + | chr1_3:39784181-39784200 | None:intergenic | 35.0% |
| AAGTTGTTCATCTCAACACT+TGG | + | chr1_3:39784212-39784231 | None:intergenic | 35.0% | |
| AGTATTAAAGTGGCCAGTAA+TGG | + | chr1_3:39784445-39784464 | None:intergenic | 35.0% | |
| GTTTGTTTCAACTTATGAGC+AGG | - | chr1_3:39784570-39784589 | Msa0117850:CDS | 35.0% | |
| ! | GCAGGATCTTTATCATTTTG+TGG | - | chr1_3:39784588-39784607 | Msa0117850:CDS | 35.0% |
| ! | GATGAGTTAGGTTGTGAAGA+GGG | + | chr1_3:39779881-39779900 | None:intergenic | 40.0% |
| ! | AGATGAGTTAGGTTGTGAAG+AGG | + | chr1_3:39779882-39779901 | None:intergenic | 40.0% |
| AGAAACTCGGTAGATGAGTT+AGG | + | chr1_3:39779893-39779912 | None:intergenic | 40.0% | |
| TCATCTACCGAGTTTCTTGA+TGG | - | chr1_3:39779896-39779915 | Msa0117850:three_prime_UTR | 40.0% | |
| AAACCTAATGCTGTTGGTGT+TGG | - | chr1_3:39779989-39780008 | Msa0117850:three_prime_UTR | 40.0% | |
| CTTCATCATCAGGAATGAAG+AGG | - | chr1_3:39780038-39780057 | Msa0117850:three_prime_UTR | 40.0% | |
| TCATCATCAGGAATGAAGAG+GGG | - | chr1_3:39780040-39780059 | Msa0117850:three_prime_UTR | 40.0% | |
| GGTTGTAAAGTAGATCTGAG+TGG | - | chr1_3:39780094-39780113 | Msa0117850:CDS | 40.0% | |
| !! | TCTCCTTCTGTTGTTGTTTC+TGG | - | chr1_3:39780166-39780185 | Msa0117850:CDS | 40.0% |
| !! | TTGTTTCTGGTTTGGAGCAA+AGG | - | chr1_3:39780179-39780198 | Msa0117850:CDS | 40.0% |
| TTGACATCAACTTCTCAAGG+GGG | + | chr1_3:39780741-39780760 | None:intergenic | 40.0% | |
| GTCACATGGCTAAAGCTAAA+AGG | + | chr1_3:39780865-39780884 | None:intergenic | 40.0% | |
| TGTCCTACTGGTAAAAGAAG+TGG | - | chr1_3:39780886-39780905 | Msa0117850:intron | 40.0% | |
| GTCCTACTGGTAAAAGAAGT+GGG | - | chr1_3:39780887-39780906 | Msa0117850:intron | 40.0% | |
| ! | TACCCACTTCTTTTACCAGT+AGG | + | chr1_3:39780892-39780911 | None:intergenic | 40.0% |
| TAAAAGAAGTGGGTAGTGAG+AGG | - | chr1_3:39780897-39780916 | Msa0117850:intron | 40.0% | |
| AAAAGAAGTGGGTAGTGAGA+GGG | - | chr1_3:39780898-39780917 | Msa0117850:intron | 40.0% | |
| !! | GAGAGGGTTAGTCTTAATGA+AGG | - | chr1_3:39780914-39780933 | Msa0117850:intron | 40.0% |
| ATATTAAACCTCCGAGGCAT+AGG | - | chr1_3:39781512-39781531 | Msa0117850:intron | 40.0% | |
| GTAATTCACACATCCTTTGG+TGG | + | chr1_3:39781579-39781598 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTTTGTGGCTC+TGG | - | chr1_3:39781607-39781626 | Msa0117850:intron | 40.0% |
| !!! | TTAGGGTTTTTTGTGGCTCT+GGG | - | chr1_3:39781608-39781627 | Msa0117850:intron | 40.0% |
| !!! | GAGTTCTCTCTGGCTTTTAT+GGG | - | chr1_3:39781667-39781686 | Msa0117850:intron | 40.0% |
| ! | TATTCCCTCTTTGGGAAGTT+AGG | - | chr1_3:39781695-39781714 | Msa0117850:intron | 40.0% |
| ! | CTCGTTGTTGCAAGCATTTT+GGG | - | chr1_3:39781784-39781803 | Msa0117850:intron | 40.0% |
| ! | TCGTTGTTGCAAGCATTTTG+GGG | - | chr1_3:39781785-39781804 | Msa0117850:intron | 40.0% |
| !!! | AGCATTTTGGGGCTTTTCTT+TGG | - | chr1_3:39781796-39781815 | Msa0117850:intron | 40.0% |
| !!! | GCATTTTGGGGCTTTTCTTT+GGG | - | chr1_3:39781797-39781816 | Msa0117850:intron | 40.0% |
| GAAAACAACGGACAACACTT+GGG | + | chr1_3:39782030-39782049 | None:intergenic | 40.0% | |
| !! | TGTTGTCCGTTGTTTTCGTT+GGG | - | chr1_3:39782033-39782052 | Msa0117850:intron | 40.0% |
| GCACGAGAAAAACTACAAGA+GGG | + | chr1_3:39782094-39782113 | None:intergenic | 40.0% | |
| TGCACGAGAAAAACTACAAG+AGG | + | chr1_3:39782095-39782114 | None:intergenic | 40.0% | |
| TATGGAACCAACAAAGAGAG+AGG | - | chr1_3:39782885-39782904 | Msa0117850:intron | 40.0% | |
| ATGGAACCAACAAAGAGAGA+GGG | - | chr1_3:39782886-39782905 | Msa0117850:intron | 40.0% | |
| TAATGGTACCCATTGAGAAG+AGG | + | chr1_3:39782926-39782945 | None:intergenic | 40.0% | |
| CTTCTCAATGGGTACCATTA+TGG | - | chr1_3:39782926-39782945 | Msa0117850:intron | 40.0% | |
| TATGGATATGTCTACAACGC+AGG | - | chr1_3:39782944-39782963 | Msa0117850:intron | 40.0% | |
| TAGAGATAAGCTAACCCCAT+TGG | - | chr1_3:39782990-39783009 | Msa0117850:intron | 40.0% | |
| AGAGATAAGCTAACCCCATT+GGG | - | chr1_3:39782991-39783010 | Msa0117850:intron | 40.0% | |
| CTGTGCAAGTTCTATCAAAC+TGG | + | chr1_3:39783447-39783466 | None:intergenic | 40.0% | |
| CAGTTTGATAGAACTTGCAC+AGG | - | chr1_3:39783445-39783464 | Msa0117850:intron | 40.0% | |
| CAGCTTCCTGAATTTGATCA+AGG | - | chr1_3:39783474-39783493 | Msa0117850:intron | 40.0% | |
| CGTTTCCCTTGATCAAATTC+AGG | + | chr1_3:39783483-39783502 | None:intergenic | 40.0% | |
| GTTAAAAATGAGCTCGGTTG+GGG | + | chr1_3:39783552-39783571 | None:intergenic | 40.0% | |
| GGTTAAAAATGAGCTCGGTT+GGG | + | chr1_3:39783553-39783572 | None:intergenic | 40.0% | |
| AGGTTAAAAATGAGCTCGGT+TGG | + | chr1_3:39783554-39783573 | None:intergenic | 40.0% | |
| ! | AAGGTAGAAGAGGAGAGTTT+TGG | + | chr1_3:39783585-39783604 | None:intergenic | 40.0% |
| AAACTCTCCTCTTCTACCTT+TGG | - | chr1_3:39783585-39783604 | Msa0117850:intron | 40.0% | |
| CGACATTTAAAAAGGGACGA+AGG | - | chr1_3:39783791-39783810 | Msa0117850:intron | 40.0% | |
| CCTTGTAGGAAAAAGTTCGA+TGG | + | chr1_3:39784062-39784081 | None:intergenic | 40.0% | |
| !! | CCATCGAACTTTTTCCTACA+AGG | - | chr1_3:39784059-39784078 | Msa0117850:intron | 40.0% |
| ! | CATGGAAGTTTGTTCCTTGT+AGG | + | chr1_3:39784076-39784095 | None:intergenic | 40.0% |
| CTACAAGGAACAAACTTCCA+TGG | - | chr1_3:39784074-39784093 | Msa0117850:intron | 40.0% | |
| CTCTTCTGTCAAACCAAACA+TGG | - | chr1_3:39784165-39784184 | Msa0117850:intron | 40.0% | |
| TTTGGCCTATGTGAACAATG+TGG | - | chr1_3:39784631-39784650 | Msa0117850:CDS | 40.0% | |
| TTGGCCTATGTGAACAATGT+GGG | - | chr1_3:39784632-39784651 | Msa0117850:CDS | 40.0% | |
| TCAACCCACATTGTTCACAT+AGG | + | chr1_3:39784639-39784658 | None:intergenic | 40.0% | |
| ! | TTAGGTTGTGAAGAGGGAGA+AGG | + | chr1_3:39779875-39779894 | None:intergenic | 45.0% |
| GGGGAAATAATCATCCACGT+AGG | - | chr1_3:39780059-39780078 | Msa0117850:three_prime_UTR | 45.0% | |
| ! | AGTAGATCTGAGTGGTGCTA+AGG | - | chr1_3:39780102-39780121 | Msa0117850:CDS | 45.0% |
| TACCAGTAGGACATGTCACA+TGG | + | chr1_3:39780879-39780898 | None:intergenic | 45.0% | |
| CAATGCATGAACACCACCAA+AGG | - | chr1_3:39781563-39781582 | Msa0117850:intron | 45.0% | |
| !!! | GGAGTTCTCTCTGGCTTTTA+TGG | - | chr1_3:39781666-39781685 | Msa0117850:intron | 45.0% |
| !!! | TTCTCTCTGGCTTTTATGGG+TGG | - | chr1_3:39781670-39781689 | Msa0117850:intron | 45.0% |
| !!! | TCTCTCTGGCTTTTATGGGT+GGG | - | chr1_3:39781671-39781690 | Msa0117850:intron | 45.0% |
| CAGACCTAACTTCCCAAAGA+GGG | + | chr1_3:39781702-39781721 | None:intergenic | 45.0% | |
| ! | CTCTTTGGGAAGTTAGGTCT+GGG | - | chr1_3:39781701-39781720 | Msa0117850:intron | 45.0% |
| ! | GCTCGTTGTTGCAAGCATTT+TGG | - | chr1_3:39781783-39781802 | Msa0117850:intron | 45.0% |
| GTCACGTGACACACTATGAT+TGG | + | chr1_3:39781892-39781911 | None:intergenic | 45.0% | |
| GAAAACCCGTTGTCACATTG+TGG | - | chr1_3:39781967-39781986 | Msa0117850:intron | 45.0% | |
| GCTAACCACAATGTGACAAC+GGG | + | chr1_3:39781975-39781994 | None:intergenic | 45.0% | |
| GGCTAACCACAATGTGACAA+CGG | + | chr1_3:39781976-39781995 | None:intergenic | 45.0% | |
| ! | TGTGGTTAGCCAATGTCACA+TGG | - | chr1_3:39781985-39782004 | Msa0117850:intron | 45.0% |
| GTGTCAATGCCATGTGACAT+TGG | + | chr1_3:39781997-39782016 | None:intergenic | 45.0% | |
| CGAAAACAACGGACAACACT+TGG | + | chr1_3:39782031-39782050 | None:intergenic | 45.0% | |
| !! | GTGTTGTCCGTTGTTTTCGT+TGG | - | chr1_3:39782032-39782051 | Msa0117850:intron | 45.0% |
| CATGCAAAACAAAGCAGGGA+AGG | + | chr1_3:39782070-39782089 | None:intergenic | 45.0% | |
| GGGACATGCAAAACAAAGCA+GGG | + | chr1_3:39782074-39782093 | None:intergenic | 45.0% | |
| AGGGACATGCAAAACAAAGC+AGG | + | chr1_3:39782075-39782094 | None:intergenic | 45.0% | |
| !! | ACCAAGAGCATCGACAATGA+AGG | - | chr1_3:39782750-39782769 | Msa0117850:intron | 45.0% |
| TCCTTCATTGTCGATGCTCT+TGG | + | chr1_3:39782754-39782773 | None:intergenic | 45.0% | |
| TAAGCACCCTCTCTCTTTGT+TGG | + | chr1_3:39782895-39782914 | None:intergenic | 45.0% | |
| CTACAACGCAGGTACCTATA+AGG | - | chr1_3:39782955-39782974 | Msa0117850:intron | 45.0% | |
| GAGATAAGCTAACCCCATTG+GGG | - | chr1_3:39782992-39783011 | Msa0117850:intron | 45.0% | |
| !! | GACTTGGCTCTGGTTCAAAT+TGG | + | chr1_3:39783289-39783308 | None:intergenic | 45.0% |
| !! | AACTCAAACTGACTTGGCTC+TGG | + | chr1_3:39783299-39783318 | None:intergenic | 45.0% |
| ACCACACTGTTACATAACCG+TGG | - | chr1_3:39783392-39783411 | Msa0117850:intron | 45.0% | |
| CCACACTGTTACATAACCGT+GGG | - | chr1_3:39783393-39783412 | Msa0117850:intron | 45.0% | |
| ! | GACTAGCTGGCCATAATGAA+AGG | - | chr1_3:39783517-39783536 | Msa0117850:intron | 45.0% |
| TAGCTGGCCATAATGAAAGG+CGG | - | chr1_3:39783520-39783539 | Msa0117850:intron | 45.0% | |
| GCTTTCTCCGCCTTTCATTA+TGG | + | chr1_3:39783530-39783549 | None:intergenic | 45.0% | |
| CGCGAGGTTAAAAATGAGCT+CGG | + | chr1_3:39783558-39783577 | None:intergenic | 45.0% | |
| !! | TGTCGATGAGTTGTTTTGCC+AGG | + | chr1_3:39784039-39784058 | None:intergenic | 45.0% |
| ATTGGAGGATGTCTAGTAGG+AGG | + | chr1_3:39784101-39784120 | None:intergenic | 45.0% | |
| ACCAAGATCAGGAACATCCT+CGG | + | chr1_3:39784354-39784373 | None:intergenic | 45.0% | |
| GATGTTCCTGATCTTGGTCT+CGG | - | chr1_3:39784356-39784375 | Msa0117850:CDS | 45.0% | |
| ! | TTTTGACCGAGACCAAGATC+AGG | + | chr1_3:39784365-39784384 | None:intergenic | 45.0% |
| GCTATTCATAGCGATCTTCG+TGG | - | chr1_3:39784392-39784411 | Msa0117850:CDS | 45.0% | |
| CACAAGGCAAGAACCATTAC+TGG | - | chr1_3:39784429-39784448 | Msa0117850:intron | 45.0% | |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr1_3:39782226-39782245 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr1_3:39782227-39782246 | None:intergenic | 5.0% |
| !! | AGATTTATTATTATTTATTA+GGG | + | chr1_3:39782683-39782702 | None:intergenic | 5.0% |
| !! | AAGATTTATTATTATTTATT+AGG | + | chr1_3:39782684-39782703 | None:intergenic | 5.0% |
| !!! | TATTTTAATATTCAATTATA+TGG | - | chr1_3:39782867-39782886 | Msa0117850:intron | 5.0% |
| CCACCAACACCAACAGCATT+AGG | + | chr1_3:39779995-39780014 | None:intergenic | 50.0% | |
| !! | CCTAATGCTGTTGGTGTTGG+TGG | - | chr1_3:39779992-39780011 | Msa0117850:three_prime_UTR | 50.0% |
| CCTTCAACTTGACACCTACG+TGG | + | chr1_3:39780076-39780095 | None:intergenic | 50.0% | |
| !! | CCACGTAGGTGTCAAGTTGA+AGG | - | chr1_3:39780073-39780092 | Msa0117850:exon | 50.0% |
| ! | GGTTTTGCCAACAGTGTAGC+AGG | - | chr1_3:39780200-39780219 | Msa0117850:CDS | 50.0% |
| CATGTGACCTGCTACACTGT+TGG | + | chr1_3:39780210-39780229 | None:intergenic | 50.0% | |
| AGCCATGTGACATGTCCTAC+TGG | - | chr1_3:39780874-39780893 | Msa0117850:intron | 50.0% | |
| ! | GCGGTTTGACTTCTTGTCCT+CGG | - | chr1_3:39781630-39781649 | Msa0117850:intron | 50.0% |
| !!! | CTCTCTGGCTTTTATGGGTG+GGG | - | chr1_3:39781672-39781691 | Msa0117850:intron | 50.0% |
| CCAGACCTAACTTCCCAAAG+AGG | + | chr1_3:39781703-39781722 | None:intergenic | 50.0% | |
| ! | CCTCTTTGGGAAGTTAGGTC+TGG | - | chr1_3:39781700-39781719 | Msa0117850:intron | 50.0% |
| GTTAGGTCTGGGTTCTTTGC+CGG | - | chr1_3:39781712-39781731 | Msa0117850:intron | 50.0% | |
| TTTGGGGGTCGTGTTTGCTT+GGG | - | chr1_3:39781737-39781756 | Msa0117850:intron | 50.0% | |
| GCGATGCCCAACGAAAACAA+CGG | + | chr1_3:39782042-39782061 | None:intergenic | 50.0% | |
| TAAGCTAACCCCATTGGGGA+TGG | - | chr1_3:39782996-39783015 | Msa0117850:intron | 50.0% | |
| CTCTTAGACCATCCCCAATG+GGG | + | chr1_3:39783007-39783026 | None:intergenic | 50.0% | |
| GCTCTTAGACCATCCCCAAT+GGG | + | chr1_3:39783008-39783027 | None:intergenic | 50.0% | |
| AGCTCTTAGACCATCCCCAA+TGG | + | chr1_3:39783009-39783028 | None:intergenic | 50.0% | |
| CCCACGGTTATGTAACAGTG+TGG | + | chr1_3:39783396-39783415 | None:intergenic | 50.0% | |
| !!! | GGAGAGTTTTGGAAAACGCG+AGG | + | chr1_3:39783574-39783593 | None:intergenic | 50.0% |
| !! | GTTGTTTGAGCACTGGGAAC+CGG | + | chr1_3:39784008-39784027 | None:intergenic | 50.0% |
| GATGTCTAGTAGGAGGACCA+TGG | + | chr1_3:39784094-39784113 | None:intergenic | 50.0% | |
| CCAAGATCAGGAACATCCTC+GGG | + | chr1_3:39784353-39784372 | None:intergenic | 50.0% | |
| TGGTCTCGGTCAAAATTCGC+AGG | - | chr1_3:39784370-39784389 | Msa0117850:CDS | 50.0% | |
| TCATAGCGATCTTCGTGGTG+AGG | - | chr1_3:39784397-39784416 | Msa0117850:CDS | 50.0% | |
| GGTGAGGTCAACGTTTCACA+AGG | - | chr1_3:39784413-39784432 | Msa0117850:CDS | 50.0% | |
| CAGCAAAACCTATGCCTCGG+AGG | + | chr1_3:39781523-39781542 | None:intergenic | 55.0% | |
| ! | CTCCGAGGCATAGGTTTTGC+TGG | - | chr1_3:39781521-39781540 | Msa0117850:intron | 55.0% |
| CGCCAGCAAAACCTATGCCT+CGG | + | chr1_3:39781526-39781545 | None:intergenic | 55.0% | |
| !!! | GGGTTTTTTGTGGCTCTGGG+CGG | - | chr1_3:39781611-39781630 | Msa0117850:intron | 55.0% |
| TCTCCTGGTGGAGTTCTCTC+TGG | - | chr1_3:39781657-39781676 | Msa0117850:intron | 55.0% | |
| AAGCCAGAGAGAACTCCACC+AGG | + | chr1_3:39781663-39781682 | None:intergenic | 55.0% | |
| ! | TGGGTGGGGTATTCCCTCTT+TGG | - | chr1_3:39781686-39781705 | Msa0117850:intron | 55.0% |
| ! | GGGTGGGGTATTCCCTCTTT+GGG | - | chr1_3:39781687-39781706 | Msa0117850:intron | 55.0% |
| TGGGTTCTTTGCCGGCCTTT+GGG | - | chr1_3:39781720-39781739 | Msa0117850:intron | 55.0% | |
| CAAGCAAACACGACCCCCAA+AGG | + | chr1_3:39781738-39781757 | None:intergenic | 55.0% | |
| ! | CTTTGGGGGTCGTGTTTGCT+TGG | - | chr1_3:39781736-39781755 | Msa0117850:intron | 55.0% |
| AAGGGAAACGAAGTTGCCGC+AGG | - | chr1_3:39783493-39783512 | Msa0117850:intron | 55.0% | |
| AATTCCGAGATCAGCCGAGC+CGG | - | chr1_3:39783986-39784005 | Msa0117850:intron | 55.0% | |
| TCGTAACTGTTTGTCGCCCG+AGG | - | chr1_3:39784334-39784353 | Msa0117850:CDS | 55.0% | |
| CCCGAGGATGTTCCTGATCT+TGG | - | chr1_3:39784350-39784369 | Msa0117850:CDS | 55.0% | |
| CTTGTCCTCGGTCGTTCTCC+TGG | - | chr1_3:39781642-39781661 | Msa0117850:intron | 60.0% | |
| CTGGGTTCTTTGCCGGCCTT+TGG | - | chr1_3:39781719-39781738 | Msa0117850:intron | 60.0% | |
| GGGTTCTTTGCCGGCCTTTG+GGG | - | chr1_3:39781721-39781740 | Msa0117850:intron | 60.0% | |
| GGTTCTTTGCCGGCCTTTGG+GGG | - | chr1_3:39781722-39781741 | Msa0117850:intron | 60.0% | |
| CAAACACGACCCCCAAAGGC+CGG | + | chr1_3:39781734-39781753 | None:intergenic | 60.0% | |
| TATGGCCAGCTAGTCGCCTG+CGG | + | chr1_3:39783512-39783531 | None:intergenic | 60.0% | |
| !! | TTGAGCACTGGGAACCGGCT+CGG | + | chr1_3:39784003-39784022 | None:intergenic | 60.0% |
| GTCCTCGGTCGTTCTCCTGG+TGG | - | chr1_3:39781645-39781664 | Msa0117850:intron | 65.0% | |
| CTCCACCAGGAGAACGACCG+AGG | + | chr1_3:39781650-39781669 | None:intergenic | 65.0% | |
| AGTTGCCGCAGGCGACTAGC+TGG | - | chr1_3:39783504-39783523 | Msa0117850:intron | 65.0% | |
| !! | GGAACCGGCTCGGCTGATCT+CGG | + | chr1_3:39783993-39784012 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39779854 | 39784686 | 39779854 | ID=Msa0117850;Name=Msa0117850 |
| chr1_3 | mRNA | 39779854 | 39784686 | 39779854 | ID=Msa0117850-mRNA-1;Parent=Msa0117850;Name=Msa0117850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.5|1|0.33|0.5|4|226|346 |
| chr1_3 | exon | 39779854 | 39780630 | 39779854 | ID=Msa0117850-mRNA-1:exon:12207;Parent=Msa0117850-mRNA-1 |
| chr1_3 | exon | 39780934 | 39781073 | 39780934 | ID=Msa0117850-mRNA-1:exon:12206;Parent=Msa0117850-mRNA-1 |
| chr1_3 | exon | 39784319 | 39784445 | 39784319 | ID=Msa0117850-mRNA-1:exon:12205;Parent=Msa0117850-mRNA-1 |
| chr1_3 | exon | 39784464 | 39784686 | 39784464 | ID=Msa0117850-mRNA-1:exon:12204;Parent=Msa0117850-mRNA-1 |
| chr1_3 | CDS | 39784464 | 39784686 | 39784464 | ID=Msa0117850-mRNA-1:cds;Parent=Msa0117850-mRNA-1 |
| chr1_3 | CDS | 39784319 | 39784445 | 39784319 | ID=Msa0117850-mRNA-1:cds;Parent=Msa0117850-mRNA-1 |
| chr1_3 | CDS | 39780934 | 39781073 | 39780934 | ID=Msa0117850-mRNA-1:cds;Parent=Msa0117850-mRNA-1 |
| chr1_3 | CDS | 39780080 | 39780630 | 39780080 | ID=Msa0117850-mRNA-1:cds;Parent=Msa0117850-mRNA-1 |
| chr1_3 | three_prime_UTR | 39779854 | 39780079 | 39779854 | ID=Msa0117850-mRNA-1:three_prime_utr;Parent=Msa0117850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
