AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070670 MtrunA17_Chr1g0176091 87.658 316 31 3 1 310 1 314 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070670 AT5G06620.1 57.292 288 114 3 30 310 40 325 2.50e-111 326
Msa0070670 AT5G06620.2 53.049 164 71 1 31 188 41 204 4.72e-55 179

Find 108 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTTAAAATTTCCCTTTC+TGG 0.140471 1_2:-41310223 Msa0070670:CDS
ATGTAAACCTGCTCAAATTT+TGG 0.164511 1_2:-41307109 Msa0070670:three_prime_UTR
ATCCCAATGCACACATTATA+TGG 0.261658 1_2:-41309013 Msa0070670:CDS
GAACTATTGTTTCAAGGTTT+CGG 0.307912 1_2:-41307234 Msa0070670:CDS
AGGGTGGCAGACGGCGGGTT+CGG 0.369692 1_2:+41311757 None:intergenic
CTGCTATATTGATGCCAGTC+TGG 0.385411 1_2:-41307274 Msa0070670:CDS
TATGTCAAGACTGTCACTTC+TGG 0.385509 1_2:+41310164 None:intergenic
CGCATTGAGTTGGCTGGTGG+TGG 0.393454 1_2:-41309386 Msa0070670:CDS
CGACGAGAACTATTGTTTCA+AGG 0.397593 1_2:-41307240 Msa0070670:CDS
AGCATTTCCAACAGCAGCTT+CGG 0.399684 1_2:+41309319 None:intergenic
ACAATGGTACATCAGTGTTT+TGG 0.402161 1_2:-41309432 Msa0070670:intron
AATATTAAGTGGTTGGATAC+AGG 0.402577 1_2:-41307137 Msa0070670:three_prime_UTR
TTGCTATACTTAATTTATGA+TGG 0.405618 1_2:+41307009 None:intergenic
CAAAAGCGGGATGAGAGGTT+AGG 0.405960 1_2:+41311686 None:intergenic
TTTGCTACTCTTGCCTCGCC+AGG 0.409626 1_2:-41311712 Msa0070670:CDS
GAGGGGAGGAAGGTGAAGGG+TGG 0.412983 1_2:+41311741 None:intergenic
TTGGCTTGCATGATCATATC+AGG 0.415237 1_2:-41310192 Msa0070670:CDS
GTGAAGTGGTTTAGTGAAAC+GGG 0.419593 1_2:+41311901 None:intergenic
GGATGAGAGGTTAGGGAGCC+TGG 0.419601 1_2:+41311694 None:intergenic
AATCATCTCAGGTGTCAAAC+TGG 0.423936 1_2:+41310131 None:intergenic
CAAGAGTAGCAAACGGGGTG+AGG 0.430548 1_2:+41311722 None:intergenic
GCCACAGTCATGATTATAGA+AGG 0.431746 1_2:+41309280 None:intergenic
TTATAACAGAAAGTTGGTTA+TGG 0.437761 1_2:+41307060 None:intergenic
CTAGGATTTGCAATATTAAG+TGG 0.439299 1_2:-41307148 Msa0070670:three_prime_UTR
TGAGATCACCGGTAGGGATT+GGG 0.440187 1_2:+41311789 None:intergenic
ATCCATATAATGTGTGCATT+GGG 0.443622 1_2:+41309011 None:intergenic
AAGTCAAACTTCATAAATAT+AGG 0.451486 1_2:-41306882 Msa0070670:three_prime_UTR
ATGAGATCACCGGTAGGGAT+TGG 0.451811 1_2:+41311788 None:intergenic
TCCCTTTCTGGTAAAGCGGT+TGG 0.454495 1_2:-41310211 Msa0070670:CDS
GGGTGAGGGGAGGAAGGTGA+AGG 0.455595 1_2:+41311737 None:intergenic
AACAAAATGTTCCTAAAAGA+AGG 0.455685 1_2:+41309544 None:intergenic
TATCCATATAATGTGTGCAT+TGG 0.459802 1_2:+41309010 None:intergenic
AAGAGTAGCAAACGGGGTGA+GGG 0.461472 1_2:+41311723 None:intergenic
AGCATTCAATATATATTTCG+TGG 0.461655 1_2:-41307032 Msa0070670:three_prime_UTR
GCAAGGGTGGGAACAAAAGC+GGG 0.463201 1_2:+41311673 None:intergenic
TAAATACCCAAAATTTGAGC+AGG 0.469821 1_2:+41307102 None:intergenic
GCGAGGCAAGAGTAGCAAAC+GGG 0.470976 1_2:+41311716 None:intergenic
GGCAAGGGTGGGAACAAAAG+CGG 0.472237 1_2:+41311672 None:intergenic
TCGAGCATCGCGGTCCAGAC+TGG 0.473277 1_2:+41307260 None:intergenic
ACCTGAGTGCGTTGGTGGCA+AGG 0.476597 1_2:+41311656 None:intergenic
TAATGCAGTGGCAAAATTGA+AGG 0.480874 1_2:-41308985 Msa0070670:CDS
CAATGCATTTCGCATTGAGT+TGG 0.481923 1_2:-41309396 Msa0070670:CDS
GAGTGCGTTGGTGGCAAGGG+TGG 0.484991 1_2:+41311660 None:intergenic
GGTGAAGGGTGGCAGACGGC+GGG 0.490528 1_2:+41311752 None:intergenic
GCCAACCGCTTTACCAGAAA+GGG 0.492202 1_2:+41310210 None:intergenic
TGTATGTAGTTGAACTGAAA+TGG 0.496566 1_2:-41311957 Msa0070670:exon
GATTTGCAATATTAAGTGGT+TGG 0.497852 1_2:-41307144 Msa0070670:three_prime_UTR
TGTGAAGTGGTTTAGTGAAA+CGG 0.500644 1_2:+41311900 None:intergenic
AAAAGCGGGATGAGAGGTTA+GGG 0.501592 1_2:+41311687 None:intergenic
ATCTCAGGTGTCAAACTGGC+AGG 0.503541 1_2:+41310135 None:intergenic
CCTGAGTGCGTTGGTGGCAA+GGG 0.508044 1_2:+41311657 None:intergenic
CTCACCTCTAAAATCATCTC+AGG 0.511645 1_2:+41310120 None:intergenic
AGCCAACCGCTTTACCAGAA+AGG 0.512299 1_2:+41310209 None:intergenic
AATCGGAGGTGGTGAGGTGG+TGG 0.512335 1_2:+41311859 None:intergenic
GGCGAGGCAAGAGTAGCAAA+CGG 0.513389 1_2:+41311715 None:intergenic
ATGTTGAGATGAGAGCAAAT+TGG 0.513802 1_2:-41311488 Msa0070670:CDS
GCCCTCCGTGACATTGATGA+AGG 0.515818 1_2:-41308963 Msa0070670:intron
ACAGAATACAAGAAGAAAGT+AGG 0.517697 1_2:+41306974 None:intergenic
CAAACGGGGTGAGGGGAGGA+AGG 0.521659 1_2:+41311731 None:intergenic
TGCGAAGACGGCGCGACCTA+CGG 0.522245 1_2:+41311817 None:intergenic
GATTGGGCGAGTTGCGAAGA+CGG 0.524161 1_2:+41311805 None:intergenic
GCATTTCGCATTGAGTTGGC+TGG 0.527315 1_2:-41309392 Msa0070670:CDS
AGGTGAAGGGTGGCAGACGG+CGG 0.534390 1_2:+41311751 None:intergenic
TGCAATAAGTGCCTTTGTGA+AGG 0.535808 1_2:+41309587 None:intergenic
GTAGAAGCCGAAGCTGCTGT+TGG 0.536645 1_2:-41309326 Msa0070670:CDS
AGTGCGTTGGTGGCAAGGGT+GGG 0.538355 1_2:+41311661 None:intergenic
GGTGAGGGGAGGAAGGTGAA+GGG 0.538492 1_2:+41311738 None:intergenic
GGAAGGTGAAGGGTGGCAGA+CGG 0.544300 1_2:+41311748 None:intergenic
TTGTGTTTATAACAGAAAGT+TGG 0.547840 1_2:+41307054 None:intergenic
GTGGCAGACGGCGGGTTCGG+CGG 0.556828 1_2:+41311760 None:intergenic
AATGCACCTGAGTGCGTTGG+TGG 0.558601 1_2:+41311651 None:intergenic
AGAGTAGCAAACGGGGTGAG+GGG 0.558878 1_2:+41311724 None:intergenic
GTAGCAAACGGGGTGAGGGG+AGG 0.564387 1_2:+41311727 None:intergenic
CCCTTGCCACCAACGCACTC+AGG 0.567423 1_2:-41311657 Msa0070670:intron
AGAGAGACTCGAATCGGAGG+TGG 0.568166 1_2:+41311848 None:intergenic
AGACGGCGGGTTCGGCGGTG+TGG 0.568637 1_2:+41311765 None:intergenic
GCAACTCGCCCAATCCCTAC+CGG 0.570799 1_2:-41311797 Msa0070670:CDS
GACTCGAATCGGAGGTGGTG+AGG 0.579357 1_2:+41311853 None:intergenic
AAGAGGGGTTCAACTTGCTA+AGG 0.581272 1_2:-41309614 Msa0070670:CDS
TGAAACGGGAAGGAGCTAAA+CGG 0.583529 1_2:+41311915 None:intergenic
AATTTCCCTTTCTGGTAAAG+CGG 0.590443 1_2:-41310215 Msa0070670:CDS
GGGAACAAAAGCGGGATGAG+AGG 0.592712 1_2:+41311681 None:intergenic
TCGGTGAGAGAGACTCGAAT+CGG 0.592931 1_2:+41311842 None:intergenic
CACTTAATATTGCAAATCCT+AGG 0.595534 1_2:+41307149 None:intergenic
CAGTCATGATTATAGAAGGA+AGG 0.596544 1_2:+41309284 None:intergenic
GGCGGTGTGGATGAGATCAC+CGG 0.599696 1_2:+41311778 None:intergenic
AGAGGTTAGGGAGCCTGGCG+AGG 0.601381 1_2:+41311699 None:intergenic
GAGAATGAAAAGATGTGAAG+TGG 0.605679 1_2:+41311887 None:intergenic
ACCTTCATCAATGTCACGGA+GGG 0.613577 1_2:+41308962 None:intergenic
GACGGCGCGACCTACGGAGT+CGG 0.623769 1_2:+41311823 None:intergenic
GTGAGAGAGACTCGAATCGG+AGG 0.630122 1_2:+41311845 None:intergenic
TCGAATCGGAGGTGGTGAGG+TGG 0.632428 1_2:+41311856 None:intergenic
TTTCGCATTGAGTTGGCTGG+TGG 0.638184 1_2:-41309389 Msa0070670:CDS
ATGATCATGCAATTCAAGTG+TGG 0.638581 1_2:+41306924 None:intergenic
TGTGGATGAGATCACCGGTA+GGG 0.641895 1_2:+41311783 None:intergenic
ACAAACCTTCATCAATGTCA+CGG 0.645369 1_2:+41308958 None:intergenic
GTCTCTCTCACCGACTCCGT+AGG 0.654378 1_2:-41311833 Msa0070670:CDS
AATTGTAGTAGGTGCTCGCA+TGG 0.655029 1_2:-41307201 Msa0070670:CDS
GTGTGGATGAGATCACCGGT+AGG 0.663265 1_2:+41311782 None:intergenic
TCAACTACATACAACGAACA+AGG 0.671843 1_2:+41311967 None:intergenic
CGAGGCAAGAGTAGCAAACG+GGG 0.672756 1_2:+41311717 None:intergenic
GCTAAGGAATGCCTTCACAA+AGG 0.678500 1_2:-41309598 Msa0070670:CDS
AGTGGTTTAGTGAAACGGGA+AGG 0.687792 1_2:+41311905 None:intergenic
TATATGGATAGATAATGCAG+TGG 0.693112 1_2:-41308997 Msa0070670:CDS
GTGATAAATTGTGTAATGTG+TGG 0.703416 1_2:-41306825 Msa0070670:three_prime_UTR
TTGCTCTCATCTCAACATCG+TGG 0.722442 1_2:+41311493 None:intergenic
AACCTTCATCAATGTCACGG+AGG 0.727757 1_2:+41308961 None:intergenic
ATAGTTCTCGTCGAGCATCG+CGG 0.732025 1_2:+41307250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTTATTTTT+TGG + chr1_2:41307525-41307544 None:intergenic 0.0%
!!! TTTGGGATTTTTATATTTAT+AGG - chr1_2:41307292-41307311 Msa0070670:CDS 15.0%
!! AAAACATAAAAACAATAACA+AGG + chr1_2:41307681-41307700 None:intergenic 15.0%
!! AATCAAATAAAATACAATTG+AGG + chr1_2:41309880-41309899 None:intergenic 15.0%
!! ATTAGATATCATAAGAATTT+AGG + chr1_2:41310897-41310916 None:intergenic 15.0%
!! ATAAAATGTAGAACTTAATT+AGG - chr1_2:41311298-41311317 Msa0070670:intron 15.0%
!!! ACAAACATGTATACTTATTT+TGG - chr1_2:41307274-41307293 Msa0070670:CDS 20.0%
!!! CAAACATGTATACTTATTTT+GGG - chr1_2:41307275-41307294 Msa0070670:CDS 20.0%
!!! ATTTTTTGGTTCAAGAATTA+TGG + chr1_2:41307511-41307530 None:intergenic 20.0%
!!! ATCAAAATTTTAAGTACAAG+GGG + chr1_2:41308218-41308237 None:intergenic 20.0%
!!! GATCAAAATTTTAAGTACAA+GGG + chr1_2:41308219-41308238 None:intergenic 20.0%
!!! TGATCAAAATTTTAAGTACA+AGG + chr1_2:41308220-41308239 None:intergenic 20.0%
!! TTATGTATAGCACTAAAAAA+AGG - chr1_2:41308285-41308304 Msa0070670:intron 20.0%
!! TATGTATAGCACTAAAAAAA+GGG - chr1_2:41308286-41308305 Msa0070670:intron 20.0%
!! GTTTCAGTAATTTATCATTA+CGG + chr1_2:41308471-41308490 None:intergenic 20.0%
!!! AATTGTCATTTAGGTAATTT+TGG + chr1_2:41308544-41308563 None:intergenic 20.0%
!! GAAAATATGCATTAATTGAA+GGG + chr1_2:41308821-41308840 None:intergenic 20.0%
!! AGAAAATATGCATTAATTGA+AGG + chr1_2:41308822-41308841 None:intergenic 20.0%
!!! TTTTCACTTATAATCAATAC+CGG - chr1_2:41308953-41308972 Msa0070670:intron 20.0%
!! TTCAATTTGAACATCAATAA+TGG + chr1_2:41309106-41309125 None:intergenic 20.0%
!!! ATTGAAGTTTGATAAAGTTT+TGG - chr1_2:41309120-41309139 Msa0070670:intron 20.0%
!!! TATAAACATCATTTTTCAGA+TGG - chr1_2:41309175-41309194 Msa0070670:intron 20.0%
!!! TTTAAGTTTTAACCAAACAA+TGG - chr1_2:41309364-41309383 Msa0070670:CDS 20.0%
!!! TTTTTCCCTTTTAATTTTGT+AGG - chr1_2:41309905-41309924 Msa0070670:intron 20.0%
!!! TTGTTGATAAAACATGATAT+AGG + chr1_2:41310036-41310055 None:intergenic 20.0%
!! TGATTGATGTTATAAAAGAT+GGG + chr1_2:41310146-41310165 None:intergenic 20.0%
!! ATGATTGATGTTATAAAAGA+TGG + chr1_2:41310147-41310166 None:intergenic 20.0%
!!! ATTAAGAAAGAGGTTTTAAA+AGG + chr1_2:41310193-41310212 None:intergenic 20.0%
!! CAATAAAACTATTAAGAAAG+AGG + chr1_2:41310203-41310222 None:intergenic 20.0%
!!! GAATAACTACATTCTAAAAT+TGG + chr1_2:41311166-41311185 None:intergenic 20.0%
!! AAAAATTTGACTGAAAATCA+AGG + chr1_2:41311242-41311261 None:intergenic 20.0%
!!! GTTGATCAAATGATAATTTT+AGG + chr1_2:41311477-41311496 None:intergenic 20.0%
!! TTGCTATACTTAATTTATGA+TGG + chr1_2:41311806-41311825 None:intergenic 20.0%
!!! TTTTATTGTTAAACATCACT+AGG - chr1_2:41311860-41311879 Msa0070670:CDS 20.0%
!! AAGTCAAACTTCATAAATAT+AGG - chr1_2:41311930-41311949 Msa0070670:CDS 20.0%
!!! CTGATTTTGATAATTATTGC+CGG - chr1_2:41307348-41307367 Msa0070670:intron 25.0%
! AAGCAGTTTAATATGTTCTA+TGG - chr1_2:41307484-41307503 Msa0070670:intron 25.0%
! TAAACAGATAAGTGAACTTA+GGG + chr1_2:41307567-41307586 None:intergenic 25.0%
! AAACAACACTTTATTCACTT+TGG - chr1_2:41307962-41307981 Msa0070670:intron 25.0%
!!! GAATTTTCTAATTTAGCTTG+TGG - chr1_2:41308018-41308037 Msa0070670:intron 25.0%
!! AGGAACAAAGTAATTTTCAA+AGG - chr1_2:41308064-41308083 Msa0070670:intron 25.0%
!!! TCAAAATTTTAAGTACAAGG+GGG + chr1_2:41308217-41308236 None:intergenic 25.0%
! CAATAAAATACTATAAGCTG+AGG + chr1_2:41308519-41308538 None:intergenic 25.0%
!!! CATTAATTGAAGGGTATTTT+AGG + chr1_2:41308812-41308831 None:intergenic 25.0%
!!! TTTCATTTACCCTTTTTTCT+CGG - chr1_2:41309008-41309027 Msa0070670:CDS 25.0%
! GAAATACAATGATTTACAGA+AGG + chr1_2:41309069-41309088 None:intergenic 25.0%
! AACAAAATGTTCCTAAAAGA+AGG + chr1_2:41309271-41309290 None:intergenic 25.0%
! AAATGAACAATCTCACTTAT+TGG - chr1_2:41309768-41309787 Msa0070670:intron 25.0%
! AAAACATGATATAGGCAAAA+AGG + chr1_2:41310028-41310047 None:intergenic 25.0%
!! CATGTTTTATCAACAAAATC+TGG - chr1_2:41310040-41310059 Msa0070670:intron 25.0%
!!! ACTCTTCTGAAATAAAATCA+GGG + chr1_2:41310624-41310643 None:intergenic 25.0%
!!! AACTCTTCTGAAATAAAATC+AGG + chr1_2:41310625-41310644 None:intergenic 25.0%
! AAGAAAGAAAACAAGACATT+GGG + chr1_2:41310716-41310735 None:intergenic 25.0%
! TAAGAAAGAAAACAAGACAT+TGG + chr1_2:41310717-41310736 None:intergenic 25.0%
!! GTATTACAGAGTATTAGATA+AGG - chr1_2:41310758-41310777 Msa0070670:intron 25.0%
! CTATTATTGATCGACAATTA+TGG - chr1_2:41310786-41310805 Msa0070670:intron 25.0%
! TAGCTCATTAATCAAACAAA+TGG - chr1_2:41311063-41311082 Msa0070670:intron 25.0%
! AATTGGATGATTACATACAT+TGG + chr1_2:41311149-41311168 None:intergenic 25.0%
! CTATAAGAGAATAACTATGA+AGG + chr1_2:41311273-41311292 None:intergenic 25.0%
! TTTCTTACATTTGTGATAGA+AGG - chr1_2:41311392-41311411 Msa0070670:intron 25.0%
!! TTATAACAGAAAGTTGGTTA+TGG + chr1_2:41311755-41311774 None:intergenic 25.0%
! TTGTGTTTATAACAGAAAGT+TGG + chr1_2:41311761-41311780 None:intergenic 25.0%
! AGCATTCAATATATATTTCG+TGG - chr1_2:41311780-41311799 Msa0070670:CDS 25.0%
TGTATGTAGTTGAACTGAAA+TGG - chr1_2:41306855-41306874 Msa0070670:three_prime_UTR 30.0%
GTGCATGTAAAATGTAATGT+AGG - chr1_2:41307238-41307257 Msa0070670:CDS 30.0%
TTAGAGAAAAACTCTCATAC+CGG + chr1_2:41307370-41307389 None:intergenic 30.0%
TTAAAGATTGTTGAAACCCA+TGG + chr1_2:41307419-41307438 None:intergenic 30.0%
ATGAGACTAATCTTTCTCTT+TGG - chr1_2:41307455-41307474 Msa0070670:intron 30.0%
AAACAGATAAGTGAACTTAG+GGG + chr1_2:41307566-41307585 None:intergenic 30.0%
GTAAACAGATAAGTGAACTT+AGG + chr1_2:41307568-41307587 None:intergenic 30.0%
CTTATCTGTTTACTAGTGTA+AGG - chr1_2:41307575-41307594 Msa0070670:intron 30.0%
! TATGTTTTCGTTACCTGTTT+TGG - chr1_2:41307693-41307712 Msa0070670:intron 30.0%
AAATTTCAAACCACCAAAAC+AGG + chr1_2:41307709-41307728 None:intergenic 30.0%
TATACAAACTCACAATGATG+AGG - chr1_2:41307736-41307755 Msa0070670:intron 30.0%
ATACAAACTCACAATGATGA+GGG - chr1_2:41307737-41307756 Msa0070670:intron 30.0%
CAAAATTGTGTCTCAGATAA+AGG - chr1_2:41308105-41308124 Msa0070670:intron 30.0%
!! AGTTGAATGCTTTGTTTGTT+GGG - chr1_2:41308183-41308202 Msa0070670:intron 30.0%
CTTGTGTTAAAAACAAGGTA+TGG + chr1_2:41308386-41308405 None:intergenic 30.0%
!!! TACCTTGTTTTTAACACAAG+AGG - chr1_2:41308386-41308405 Msa0070670:intron 30.0%
! AGGTTAGGTAATTGTCATTT+AGG + chr1_2:41308553-41308572 None:intergenic 30.0%
! ATTACCTAACCTCTTTTCAA+AGG - chr1_2:41308561-41308580 Msa0070670:intron 30.0%
! CAATGACTCTTTTATTCTCA+TGG - chr1_2:41308846-41308865 Msa0070670:intron 30.0%
!! ATCATTTTTCAGATGGAAGA+GGG - chr1_2:41309182-41309201 Msa0070670:intron 30.0%
! ATTGCTTGTATCCTTCTTTT+AGG - chr1_2:41309257-41309276 Msa0070670:intron 30.0%
TGTTGAGAGATTACTTATCT+TGG - chr1_2:41309338-41309357 Msa0070670:CDS 30.0%
GAAATATAAGCTCATGTTGA+CGG + chr1_2:41309588-41309607 None:intergenic 30.0%
AATATTTGCCTTCCATGTTT+AGG - chr1_2:41309674-41309693 Msa0070670:intron 30.0%
TACATGATTTCTCCTAAACA+TGG + chr1_2:41309689-41309708 None:intergenic 30.0%
AAAAATGACAAGGTTTAGAG+AGG + chr1_2:41309739-41309758 None:intergenic 30.0%
ATCCATATAATGTGTGCATT+GGG + chr1_2:41309804-41309823 None:intergenic 30.0%
TATCCATATAATGTGTGCAT+TGG + chr1_2:41309805-41309824 None:intergenic 30.0%
TATATGGATAGATAATGCAG+TGG - chr1_2:41309815-41309834 Msa0070670:intron 30.0%
!!! TCCCTTTTAATTTTGTAGGA+TGG - chr1_2:41309909-41309928 Msa0070670:intron 30.0%
GCCATCCTACAAAATTAAAA+GGG + chr1_2:41309913-41309932 None:intergenic 30.0%
AGCCATCCTACAAAATTAAA+AGG + chr1_2:41309914-41309933 None:intergenic 30.0%
! GATGTTATAAAAGATGGGTT+GGG + chr1_2:41310141-41310160 None:intergenic 30.0%
TGATGTTATAAAAGATGGGT+TGG + chr1_2:41310142-41310161 None:intergenic 30.0%
AATCATTGACAGAACACTTT+AGG - chr1_2:41310161-41310180 Msa0070670:CDS 30.0%
TAGATTTGAATGACTTACCA+TGG - chr1_2:41310675-41310694 Msa0070670:intron 30.0%
AGAAAGAAAACAAGACATTG+GGG + chr1_2:41310715-41310734 None:intergenic 30.0%
TCATTCATGCAAGATATTAG+TGG + chr1_2:41311011-41311030 None:intergenic 30.0%
GGAATTAAAAGTTAGCTGTA+AGG - chr1_2:41311084-41311103 Msa0070670:intron 30.0%
TTACATACATTGGCATCTTA+TGG + chr1_2:41311139-41311158 None:intergenic 30.0%
ATTTGACTGAAAATCAAGGA+TGG + chr1_2:41311238-41311257 None:intergenic 30.0%
AACCATCTTTGTTAAATTGC+AGG - chr1_2:41311500-41311519 Msa0070670:CDS 30.0%
GAACTATTGTTTCAAGGTTT+CGG - chr1_2:41311578-41311597 Msa0070670:intron 30.0%
! GTTTTCAATGCAATTGTAGT+AGG - chr1_2:41311600-41311619 Msa0070670:intron 30.0%
TTTCTCCAAAAAATTCTCCT+AGG - chr1_2:41311646-41311665 Msa0070670:intron 30.0%
!!! CAAATCCTAGGAGAATTTTT+TGG + chr1_2:41311654-41311673 None:intergenic 30.0%
CACTTAATATTGCAAATCCT+AGG + chr1_2:41311666-41311685 None:intergenic 30.0%
CTAGGATTTGCAATATTAAG+TGG - chr1_2:41311664-41311683 Msa0070670:CDS 30.0%
GATTTGCAATATTAAGTGGT+TGG - chr1_2:41311668-41311687 Msa0070670:CDS 30.0%
AATATTAAGTGGTTGGATAC+AGG - chr1_2:41311675-41311694 Msa0070670:CDS 30.0%
! ATGTAAACCTGCTCAAATTT+TGG - chr1_2:41311703-41311722 Msa0070670:CDS 30.0%
! TGTAAACCTGCTCAAATTTT+GGG - chr1_2:41311704-41311723 Msa0070670:CDS 30.0%
TAAATACCCAAAATTTGAGC+AGG + chr1_2:41311713-41311732 None:intergenic 30.0%
ACAGAATACAAGAAGAAAGT+AGG + chr1_2:41311841-41311860 None:intergenic 30.0%
!!! GATCATTTTTTTTACTGCAG+AGG - chr1_2:41311905-41311924 Msa0070670:CDS 30.0%
GTGATAAATTGTGTAATGTG+TGG - chr1_2:41311987-41312006 Msa0070670:five_prime_UTR 30.0%
TCAACTACATACAACGAACA+AGG + chr1_2:41306848-41306867 None:intergenic 35.0%
TGTGAAGTGGTTTAGTGAAA+CGG + chr1_2:41306915-41306934 None:intergenic 35.0%
GAGAATGAAAAGATGTGAAG+TGG + chr1_2:41306928-41306947 None:intergenic 35.0%
TAACATGTTGATCTGCAAGA+AGG + chr1_2:41307215-41307234 None:intergenic 35.0%
ATGTTGAGATGAGAGCAAAT+TGG - chr1_2:41307324-41307343 Msa0070670:intron 35.0%
ATTAGCATCTTCAATTGCCA+TGG - chr1_2:41307399-41307418 Msa0070670:intron 35.0%
TTAGCATCTTCAATTGCCAT+GGG - chr1_2:41307400-41307419 Msa0070670:intron 35.0%
TGTTTACTAGTGTAAGGTCT+GGG - chr1_2:41307581-41307600 Msa0070670:intron 35.0%
TGAATCAGACTTATTGTTGG+AGG + chr1_2:41307617-41307636 None:intergenic 35.0%
GTCTGAATCAGACTTATTGT+TGG + chr1_2:41307620-41307639 None:intergenic 35.0%
TACAAACTCACAATGATGAG+GGG - chr1_2:41307738-41307757 Msa0070670:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr1_2:41307779-41307798 Msa0070670:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr1_2:41307829-41307848 Msa0070670:intron 35.0%
TCTTGTGTAAAAAACAGGGA+GGG - chr1_2:41307833-41307852 Msa0070670:intron 35.0%
!! CTTTATTCACTTTGGTTCTC+TGG - chr1_2:41307970-41307989 Msa0070670:intron 35.0%
!! TAATTTAGCTTGTGGTGATG+TGG - chr1_2:41308026-41308045 Msa0070670:intron 35.0%
!! TCTGAGACACAATTTTGACA+AGG + chr1_2:41308102-41308121 None:intergenic 35.0%
TCAGATAAAGGTCTCATCAT+GGG - chr1_2:41308117-41308136 Msa0070670:intron 35.0%
!! GAGTTGAATGCTTTGTTTGT+TGG - chr1_2:41308182-41308201 Msa0070670:intron 35.0%
AGCCTCTTGTGTTAAAAACA+AGG + chr1_2:41308391-41308410 None:intergenic 35.0%
TATTATGTGTAGCCCTATGA+TGG - chr1_2:41308423-41308442 Msa0070670:intron 35.0%
ATTATGTGTAGCCCTATGAT+GGG - chr1_2:41308424-41308443 Msa0070670:intron 35.0%
! TAACCTCTTTTCAAAGGAAC+CGG - chr1_2:41308567-41308586 Msa0070670:intron 35.0%
! GAAAGGGAAATTTTAAACCC+CGG + chr1_2:41308589-41308608 None:intergenic 35.0%
! GGGTTTAAAATTTCCCTTTC+TGG - chr1_2:41308589-41308608 Msa0070670:intron 35.0%
! AATTTCCCTTTCTGGTAAAG+CGG - chr1_2:41308597-41308616 Msa0070670:intron 35.0%
ATGGAACAACTTCTCATGAA+GGG - chr1_2:41308865-41308884 Msa0070670:intron 35.0%
TCACTTATAATCAATACCGG+AGG - chr1_2:41308956-41308975 Msa0070670:intron 35.0%
TGAACAAACAATACTTCCTC+CGG + chr1_2:41308975-41308994 None:intergenic 35.0%
TTCGAAAACTAATGAGTGGT+AGG + chr1_2:41309037-41309056 None:intergenic 35.0%
!!! TACCACTCATTAGTTTTCGA+AGG - chr1_2:41309036-41309055 Msa0070670:intron 35.0%
TTCCTTCGAAAACTAATGAG+TGG + chr1_2:41309041-41309060 None:intergenic 35.0%
!! CATCATTTTTCAGATGGAAG+AGG - chr1_2:41309181-41309200 Msa0070670:intron 35.0%
!! TCATTTTTCAGATGGAAGAG+GGG - chr1_2:41309183-41309202 Msa0070670:intron 35.0%
ACACATGCATAAAGAGATCA+TGG - chr1_2:41309310-41309329 Msa0070670:CDS 35.0%
AACACTGATGTACCATTGTT+TGG + chr1_2:41309379-41309398 None:intergenic 35.0%
! ACAATGGTACATCAGTGTTT+TGG - chr1_2:41309380-41309399 Msa0070670:CDS 35.0%
CAGTCATGATTATAGAAGGA+AGG + chr1_2:41309531-41309550 None:intergenic 35.0%
TCCTTCTATAATCATGACTG+TGG - chr1_2:41309531-41309550 Msa0070670:intron 35.0%
TGATTTCTCCTAAACATGGA+AGG + chr1_2:41309685-41309704 None:intergenic 35.0%
TCTCAGGGTTAAAAATGACA+AGG + chr1_2:41309749-41309768 None:intergenic 35.0%
GTGAGATTGTTCATTTCTCA+GGG + chr1_2:41309764-41309783 None:intergenic 35.0%
AGTGAGATTGTTCATTTCTC+AGG + chr1_2:41309765-41309784 None:intergenic 35.0%
ATCCCAATGCACACATTATA+TGG - chr1_2:41309799-41309818 Msa0070670:intron 35.0%
TAATGCAGTGGCAAAATTGA+AGG - chr1_2:41309827-41309846 Msa0070670:intron 35.0%
ACAAACCTTCATCAATGTCA+CGG + chr1_2:41309857-41309876 None:intergenic 35.0%
! TCATTGAATGCTCTACGTTT+TGG + chr1_2:41309940-41309959 None:intergenic 35.0%
! ATCCTTTTCTATCCAGGTTA+TGG + chr1_2:41310067-41310086 None:intergenic 35.0%
TAGAAAAGGATGCTTGTCTT+AGG - chr1_2:41310076-41310095 Msa0070670:intron 35.0%
CAAAATGACACCATTAAGCT+TGG + chr1_2:41310352-41310371 None:intergenic 35.0%
!!! CAAGCTTAATGGTGTCATTT+TGG - chr1_2:41310350-41310369 Msa0070670:intron 35.0%
ACCTATTAGGCAATCACTAA+GGG + chr1_2:41310468-41310487 None:intergenic 35.0%
TTAGTGATTGCCTAATAGGT+GGG - chr1_2:41310468-41310487 Msa0070670:intron 35.0%
AGAGTAGAAGAAACGCATAT+GGG + chr1_2:41310515-41310534 None:intergenic 35.0%
TGAAACGAAAATGCTTGTGA+CGG - chr1_2:41310544-41310563 Msa0070670:intron 35.0%
! GAATGACTTACCATGGATTT+TGG - chr1_2:41310682-41310701 Msa0070670:intron 35.0%
!!! ACTTACCATGGATTTTGGTT+TGG - chr1_2:41310687-41310706 Msa0070670:intron 35.0%
GAAAGAAAACAAGACATTGG+GGG + chr1_2:41310714-41310733 None:intergenic 35.0%
AGATTCAGTAGTTTCTTCTG+AGG + chr1_2:41310865-41310884 None:intergenic 35.0%
! ATTGGTGATCTTGCTAAACT+TGG - chr1_2:41311201-41311220 Msa0070670:intron 35.0%
CACCTGCAATTTAACAAAGA+TGG + chr1_2:41311505-41311524 None:intergenic 35.0%
ATGATCATGCAATTCAAGTG+TGG + chr1_2:41311891-41311910 None:intergenic 35.0%
GTGAAGTGGTTTAGTGAAAC+GGG + chr1_2:41306914-41306933 None:intergenic 40.0%
AGTCTCATTAATCATGCGAG+AGG + chr1_2:41307443-41307462 None:intergenic 40.0%
CTGTTTACTAGTGTAAGGTC+TGG - chr1_2:41307580-41307599 Msa0070670:intron 40.0%
!! GTTTTCGTTACCTGTTTTGG+TGG - chr1_2:41307696-41307715 Msa0070670:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr1_2:41307828-41307847 Msa0070670:intron 40.0%
!!! CTCCCTGTTTTTTACACAAG+AGG + chr1_2:41307834-41307853 None:intergenic 40.0%
CTCTTGTGTAAAAAACAGGG+AGG - chr1_2:41307832-41307851 Msa0070670:intron 40.0%
TGTAAAAAACAGGGAGGGTA+AGG - chr1_2:41307838-41307857 Msa0070670:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr1_2:41307864-41307883 Msa0070670:intron 40.0%
AGTCTGTATAAAGAGCAACC+CGG + chr1_2:41307930-41307949 None:intergenic 40.0%
TCAAATGCAAGTAGTCAACG+AGG - chr1_2:41307993-41308012 Msa0070670:intron 40.0%
CAAATGCAAGTAGTCAACGA+GGG - chr1_2:41307994-41308013 Msa0070670:intron 40.0%
CTCAGATAAAGGTCTCATCA+TGG - chr1_2:41308116-41308135 Msa0070670:intron 40.0%
CAGATAAAGGTCTCATCATG+GGG - chr1_2:41308118-41308137 Msa0070670:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_2:41307864-41307883 None:intergenic 40.0%
ACCAGAAATTGCCCATCATA+GGG + chr1_2:41308438-41308457 None:intergenic 40.0%
! GGTTCCTTTGAAAAGAGGTT+AGG + chr1_2:41308568-41308587 None:intergenic 40.0%
! AACCTCTTTTCAAAGGAACC+GGG - chr1_2:41308568-41308587 Msa0070670:intron 40.0%
!! TTGGCTTGCATGATCATATC+AGG - chr1_2:41308620-41308639 Msa0070670:intron 40.0%
! TATGTCAAGACTGTCACTTC+TGG + chr1_2:41308651-41308670 None:intergenic 40.0%
AATCATCTCAGGTGTCAAAC+TGG + chr1_2:41308684-41308703 None:intergenic 40.0%
! GACACCTGAGATGATTTTAG+AGG - chr1_2:41308688-41308707 Msa0070670:intron 40.0%
!! CTCACCTCTAAAATCATCTC+AGG + chr1_2:41308695-41308714 None:intergenic 40.0%
CATGGAACAACTTCTCATGA+AGG - chr1_2:41308864-41308883 Msa0070670:intron 40.0%
TGCAATAAGTGCCTTTGTGA+AGG + chr1_2:41309228-41309247 None:intergenic 40.0%
CAATGCATTTCGCATTGAGT+TGG - chr1_2:41309416-41309435 Msa0070670:CDS 40.0%
GCCACAGTCATGATTATAGA+AGG + chr1_2:41309535-41309554 None:intergenic 40.0%
AAGCACAGTTGTCTCAAAAC+TGG - chr1_2:41309633-41309652 Msa0070670:intron 40.0%
! TCTATGCGTGTGTACTTTTC+TGG + chr1_2:41309713-41309732 None:intergenic 40.0%
GTCACAGTCTGACAACTTAA+TGG - chr1_2:41309998-41310017 Msa0070670:intron 40.0%
CAGTCTGACAACTTAATGGA+AGG - chr1_2:41310002-41310021 Msa0070670:intron 40.0%
ACAAAATCTGGTCCATAACC+TGG - chr1_2:41310052-41310071 Msa0070670:intron 40.0%
GTCCATAACCTGGATAGAAA+AGG - chr1_2:41310062-41310081 Msa0070670:intron 40.0%
! ACAAGCATCCTTTTCTATCC+AGG + chr1_2:41310073-41310092 None:intergenic 40.0%
!! TAAAAGATGGGTTGGGAAAG+AGG + chr1_2:41310134-41310153 None:intergenic 40.0%
! ACGAAGCCTATAGTGTTGTT+TGG - chr1_2:41310239-41310258 Msa0070670:intron 40.0%
CATGCACCAAACAACACTAT+AGG + chr1_2:41310248-41310267 None:intergenic 40.0%
GCTCTTTATGCCAAGCTTAA+TGG - chr1_2:41310339-41310358 Msa0070670:intron 40.0%
TTGGTCGTTGAATTTGCATC+TGG - chr1_2:41310369-41310388 Msa0070670:intron 40.0%
TGGTCGTTGAATTTGCATCT+GGG - chr1_2:41310370-41310389 Msa0070670:intron 40.0%
GTTGAATTTGCATCTGGGAA+AGG - chr1_2:41310375-41310394 Msa0070670:intron 40.0%
AATTTGCATCTGGGAAAGGT+TGG - chr1_2:41310379-41310398 Msa0070670:intron 40.0%
TCCCTTAGTGATTGCCTAAT+AGG - chr1_2:41310464-41310483 Msa0070670:intron 40.0%
CACCTATTAGGCAATCACTA+AGG + chr1_2:41310469-41310488 None:intergenic 40.0%
CTTAGTGATTGCCTAATAGG+TGG - chr1_2:41310467-41310486 Msa0070670:intron 40.0%
GAGAGTAGAAGAAACGCATA+TGG + chr1_2:41310516-41310535 None:intergenic 40.0%
GTTAGCTGTAAGGAGCTTAA+AGG - chr1_2:41311094-41311113 Msa0070670:intron 40.0%
TTCTGTTATCGCGTTGTGAT+TGG - chr1_2:41311183-41311202 Msa0070670:intron 40.0%
TAGAAGATAGCAGACCTAGA+TGG - chr1_2:41311424-41311443 Msa0070670:intron 40.0%
CGACGAGAACTATTGTTTCA+AGG - chr1_2:41311572-41311591 Msa0070670:intron 40.0%
TGAAACGGGAAGGAGCTAAA+CGG + chr1_2:41306900-41306919 None:intergenic 45.0%
AGTGGTTTAGTGAAACGGGA+AGG + chr1_2:41306910-41306929 None:intergenic 45.0%
AAAAGCGGGATGAGAGGTTA+GGG + chr1_2:41307128-41307147 None:intergenic 45.0%
AAAAATGCACCTGAGTGCGT+TGG + chr1_2:41307167-41307186 None:intergenic 45.0%
TTGCTCTCATCTCAACATCG+TGG + chr1_2:41307322-41307341 None:intergenic 45.0%
GTCTGATTCAGACAGTACAG+TGG - chr1_2:41307627-41307646 Msa0070670:intron 45.0%
ACAATGATGAGGGGTAACCT+TGG - chr1_2:41307747-41307766 Msa0070670:intron 45.0%
TCATGTGACTGGAAAGTCAC+AGG - chr1_2:41307790-41307809 Msa0070670:intron 45.0%
AAAGTCACAGGTTCAAGTCC+TGG - chr1_2:41307802-41307821 Msa0070670:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr1_2:41307823-41307842 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr1_2:41307860-41307879 Msa0070670:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr1_2:41307863-41307882 Msa0070670:intron 45.0%
CTAAAGCTCCCAATTAGGCA+GGG + chr1_2:41307903-41307922 None:intergenic 45.0%
ACTAAAGCTCCCAATTAGGC+AGG + chr1_2:41307904-41307923 None:intergenic 45.0%
GTGCACTAAAGCTCCCAATT+AGG + chr1_2:41307908-41307927 None:intergenic 45.0%
! AATTGGGAGCTTTAGTGCAC+CGG - chr1_2:41307908-41307927 Msa0070670:intron 45.0%
!! TGTGGTGTCTCTGAGATGTA+AGG - chr1_2:41308044-41308063 Msa0070670:intron 45.0%
TAAAGGTCTCATCATGGGGT+TGG - chr1_2:41308122-41308141 Msa0070670:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_2:41307863-41307882 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_2:41307860-41307879 None:intergenic 45.0%
! TAACACAAGAGGCTGTTTCC+AGG - chr1_2:41308397-41308416 Msa0070670:intron 45.0%
! AACACAAGAGGCTGTTTCCA+GGG - chr1_2:41308398-41308417 Msa0070670:intron 45.0%
GGGCTACACATAATAATCCC+TGG + chr1_2:41308418-41308437 None:intergenic 45.0%
GACCAGAAATTGCCCATCAT+AGG + chr1_2:41308439-41308458 None:intergenic 45.0%
!! ATGATGGGCAATTTCTGGTC+TGG - chr1_2:41308439-41308458 Msa0070670:intron 45.0%
! ACCTCTTTTCAAAGGAACCG+GGG - chr1_2:41308569-41308588 Msa0070670:intron 45.0%
GGTAGGCATCCGAGAAAAAA+GGG + chr1_2:41309020-41309039 None:intergenic 45.0%
TGGTAGGCATCCGAGAAAAA+AGG + chr1_2:41309021-41309040 None:intergenic 45.0%
!! AAGAGGGGTTCAACTTGCTA+AGG - chr1_2:41309198-41309217 Msa0070670:intron 45.0%
GCTAAGGAATGCCTTCACAA+AGG - chr1_2:41309214-41309233 Msa0070670:intron 45.0%
AGCATTTCCAACAGCAGCTT+CGG + chr1_2:41309496-41309515 None:intergenic 45.0%
ACCTTCATCAATGTCACGGA+GGG + chr1_2:41309853-41309872 None:intergenic 45.0%
AACCTTCATCAATGTCACGG+AGG + chr1_2:41309854-41309873 None:intergenic 45.0%
GTGCTTTGCTGCCAATCTTT+GGG - chr1_2:41310308-41310327 Msa0070670:intron 45.0%
AGCGTAACGAACCCAAAGAT+TGG + chr1_2:41310322-41310341 None:intergenic 45.0%
CTTTAGTGTGACTCCTCTAG+TGG - chr1_2:41310414-41310433 Msa0070670:intron 45.0%
ATGCAGCTAACCCACCTATT+AGG + chr1_2:41310481-41310500 None:intergenic 45.0%
! CAGTCTGGGATTTACTTGGT+GGG - chr1_2:41310591-41310610 Msa0070670:intron 45.0%
ACTCTTCACTAGCTAAAGCG+AGG + chr1_2:41310922-41310941 None:intergenic 45.0%
TCAGTACCATGCTACCATCT+AGG + chr1_2:41311441-41311460 None:intergenic 45.0%
CTGCTATATTGATGCCAGTC+TGG - chr1_2:41311538-41311557 Msa0070670:intron 45.0%
AATTGTAGTAGGTGCTCGCA+TGG - chr1_2:41311611-41311630 Msa0070670:intron 45.0%
!!! ATTTTTATCTATTTATATAT+TGG - chr1_2:41310736-41310755 Msa0070670:intron 5.0%
TCGGTGAGAGAGACTCGAAT+CGG + chr1_2:41306973-41306992 None:intergenic 50.0%
TGAGATCACCGGTAGGGATT+GGG + chr1_2:41307026-41307045 None:intergenic 50.0%
ATGAGATCACCGGTAGGGAT+TGG + chr1_2:41307027-41307046 None:intergenic 50.0%
TGTGGATGAGATCACCGGTA+GGG + chr1_2:41307032-41307051 None:intergenic 50.0%
AAGAGTAGCAAACGGGGTGA+GGG + chr1_2:41307092-41307111 None:intergenic 50.0%
CAAAAGCGGGATGAGAGGTT+AGG + chr1_2:41307129-41307148 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr1_2:41307767-41307786 None:intergenic 50.0%
! ATTGGGAGCTTTAGTGCACC+GGG - chr1_2:41307909-41307928 Msa0070670:intron 50.0%
TTCCTGGACGTTGTGTATGC+TGG + chr1_2:41308332-41308351 None:intergenic 50.0%
AGCATACACAACGTCCAGGA+AGG - chr1_2:41308331-41308350 Msa0070670:intron 50.0%
GCATACACAACGTCCAGGAA+GGG - chr1_2:41308332-41308351 Msa0070670:intron 50.0%
CATACACAACGTCCAGGAAG+GGG - chr1_2:41308333-41308352 Msa0070670:intron 50.0%
!! GCCCTATGATGGGCAATTTC+TGG - chr1_2:41308434-41308453 Msa0070670:intron 50.0%
! ACCCCGGTTCCTTTGAAAAG+AGG + chr1_2:41308573-41308592 None:intergenic 50.0%
! TCCCTTTCTGGTAAAGCGGT+TGG - chr1_2:41308601-41308620 Msa0070670:intron 50.0%
GCCAACCGCTTTACCAGAAA+GGG + chr1_2:41308605-41308624 None:intergenic 50.0%
AGCCAACCGCTTTACCAGAA+AGG + chr1_2:41308606-41308625 None:intergenic 50.0%
ATCTCAGGTGTCAAACTGGC+AGG + chr1_2:41308680-41308699 None:intergenic 50.0%
!! GCATTTCGCATTGAGTTGGC+TGG - chr1_2:41309420-41309439 Msa0070670:CDS 50.0%
!! TTTCGCATTGAGTTGGCTGG+TGG - chr1_2:41309423-41309442 Msa0070670:intron 50.0%
! ATTGGCAGCAAAGCACCCAA+GGG + chr1_2:41310304-41310323 None:intergenic 50.0%
GGTGCTTTGCTGCCAATCTT+TGG - chr1_2:41310307-41310326 Msa0070670:intron 50.0%
TCAAGTGCAGAGACCACTAG+AGG + chr1_2:41310430-41310449 None:intergenic 50.0%
TTGCTTTCGTACCTCCAGTC+TGG - chr1_2:41310576-41310595 Msa0070670:intron 50.0%
TGCTTTCGTACCTCCAGTCT+GGG - chr1_2:41310577-41310596 Msa0070670:intron 50.0%
CCAAGTAAATCCCAGACTGG+AGG + chr1_2:41310590-41310609 None:intergenic 50.0%
! CCTCCAGTCTGGGATTTACT+TGG - chr1_2:41310587-41310606 Msa0070670:intron 50.0%
CCACCAAGTAAATCCCAGAC+TGG + chr1_2:41310593-41310612 None:intergenic 50.0%
! CCAGTCTGGGATTTACTTGG+TGG - chr1_2:41310590-41310609 Msa0070670:intron 50.0%
GGGGACCAAACCAAAATCCA+TGG + chr1_2:41310695-41310714 None:intergenic 50.0%
AGCAGACCTAGATGGTAGCA+TGG - chr1_2:41311432-41311451 Msa0070670:intron 50.0%
! ATAGTTCTCGTCGAGCATCG+CGG + chr1_2:41311565-41311584 None:intergenic 50.0%
AGAGAGACTCGAATCGGAGG+TGG + chr1_2:41306967-41306986 None:intergenic 55.0%
GTGAGAGAGACTCGAATCGG+AGG + chr1_2:41306970-41306989 None:intergenic 55.0%
GATTGGGCGAGTTGCGAAGA+CGG + chr1_2:41307010-41307029 None:intergenic 55.0%
GTGTGGATGAGATCACCGGT+AGG + chr1_2:41307033-41307052 None:intergenic 55.0%
AGAGTAGCAAACGGGGTGAG+GGG + chr1_2:41307091-41307110 None:intergenic 55.0%
CAAGAGTAGCAAACGGGGTG+AGG + chr1_2:41307093-41307112 None:intergenic 55.0%
CGAGGCAAGAGTAGCAAACG+GGG + chr1_2:41307098-41307117 None:intergenic 55.0%
GCGAGGCAAGAGTAGCAAAC+GGG + chr1_2:41307099-41307118 None:intergenic 55.0%
GGCGAGGCAAGAGTAGCAAA+CGG + chr1_2:41307100-41307119 None:intergenic 55.0%
TTTGCTACTCTTGCCTCGCC+AGG - chr1_2:41307100-41307119 Msa0070670:three_prime_UTR 55.0%
GGGAACAAAAGCGGGATGAG+AGG + chr1_2:41307134-41307153 None:intergenic 55.0%
GCAAGGGTGGGAACAAAAGC+GGG + chr1_2:41307142-41307161 None:intergenic 55.0%
GGCAAGGGTGGGAACAAAAG+CGG + chr1_2:41307143-41307162 None:intergenic 55.0%
AATGCACCTGAGTGCGTTGG+TGG + chr1_2:41307164-41307183 None:intergenic 55.0%
AATTAGGCAGGGTCCGGGAA+GGG + chr1_2:41307892-41307911 None:intergenic 55.0%
TTCCCGGACCCTGCCTAATT+GGG - chr1_2:41307892-41307911 Msa0070670:intron 55.0%
! TGCTGGAGCTTTAGTGCGCT+AGG + chr1_2:41308315-41308334 None:intergenic 55.0%
CTCCAGCATACACAACGTCC+AGG - chr1_2:41308327-41308346 Msa0070670:intron 55.0%
GTAGAAGCCGAAGCTGCTGT+TGG - chr1_2:41309486-41309505 Msa0070670:intron 55.0%
GCCCTCCGTGACATTGATGA+AGG - chr1_2:41309849-41309868 Msa0070670:intron 55.0%
TAGACAGTGCAGCCACCCTT+GGG - chr1_2:41310286-41310305 Msa0070670:intron 55.0%
! GATTGGCAGCAAAGCACCCA+AGG + chr1_2:41310305-41310324 None:intergenic 55.0%
AATCGGAGGTGGTGAGGTGG+TGG + chr1_2:41306956-41306975 None:intergenic 60.0%
TCGAATCGGAGGTGGTGAGG+TGG + chr1_2:41306959-41306978 None:intergenic 60.0%
GACTCGAATCGGAGGTGGTG+AGG + chr1_2:41306962-41306981 None:intergenic 60.0%
!! GTCTCTCTCACCGACTCCGT+AGG - chr1_2:41306979-41306998 Msa0070670:three_prime_UTR 60.0%
GCAACTCGCCCAATCCCTAC+CGG - chr1_2:41307015-41307034 Msa0070670:three_prime_UTR 60.0%
GGCGGTGTGGATGAGATCAC+CGG + chr1_2:41307037-41307056 None:intergenic 60.0%
GGAAGGTGAAGGGTGGCAGA+CGG + chr1_2:41307067-41307086 None:intergenic 60.0%
GGTGAGGGGAGGAAGGTGAA+GGG + chr1_2:41307077-41307096 None:intergenic 60.0%
GGATGAGAGGTTAGGGAGCC+TGG + chr1_2:41307121-41307140 None:intergenic 60.0%
!! AGTGCGTTGGTGGCAAGGGT+GGG + chr1_2:41307154-41307173 None:intergenic 60.0%
!! CCTGAGTGCGTTGGTGGCAA+GGG + chr1_2:41307158-41307177 None:intergenic 60.0%
!! ACCTGAGTGCGTTGGTGGCA+AGG + chr1_2:41307159-41307178 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_2:41307756-41307775 Msa0070670:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_2:41307876-41307895 Msa0070670:intron 60.0%
ATTAGGCAGGGTCCGGGAAG+GGG + chr1_2:41307891-41307910 None:intergenic 60.0%
CAATTAGGCAGGGTCCGGGA+AGG + chr1_2:41307893-41307912 None:intergenic 60.0%
CTTCCCGGACCCTGCCTAAT+TGG - chr1_2:41307891-41307910 Msa0070670:intron 60.0%
CTCCCAATTAGGCAGGGTCC+GGG + chr1_2:41307897-41307916 None:intergenic 60.0%
GCTCCCAATTAGGCAGGGTC+CGG + chr1_2:41307898-41307917 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+TGG + chr1_2:41307876-41307895 None:intergenic 60.0%
CAGGAAGGGGTCCCACCATT+TGG - chr1_2:41308346-41308365 Msa0070670:intron 60.0%
!! CGCATTGAGTTGGCTGGTGG+TGG - chr1_2:41309426-41309445 Msa0070670:intron 60.0%
CTAGACAGTGCAGCCACCCT+TGG - chr1_2:41310285-41310304 Msa0070670:intron 60.0%
TGCGAAGACGGCGCGACCTA+CGG + chr1_2:41306998-41307017 None:intergenic 65.0%
AGGTGAAGGGTGGCAGACGG+CGG + chr1_2:41307064-41307083 None:intergenic 65.0%
GAGGGGAGGAAGGTGAAGGG+TGG + chr1_2:41307074-41307093 None:intergenic 65.0%
GGGTGAGGGGAGGAAGGTGA+AGG + chr1_2:41307078-41307097 None:intergenic 65.0%
CAAACGGGGTGAGGGGAGGA+AGG + chr1_2:41307084-41307103 None:intergenic 65.0%
GTAGCAAACGGGGTGAGGGG+AGG + chr1_2:41307088-41307107 None:intergenic 65.0%
AGAGGTTAGGGAGCCTGGCG+AGG + chr1_2:41307116-41307135 None:intergenic 65.0%
!! GAGTGCGTTGGTGGCAAGGG+TGG + chr1_2:41307155-41307174 None:intergenic 65.0%
CCCTTGCCACCAACGCACTC+AGG - chr1_2:41307155-41307174 Msa0070670:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_2:41307878-41307897 None:intergenic 65.0%
! GGCAGCAAAGCACCCAAGGG+TGG + chr1_2:41310301-41310320 None:intergenic 65.0%
! TCGAGCATCGCGGTCCAGAC+TGG + chr1_2:41311555-41311574 None:intergenic 65.0%
GACGGCGCGACCTACGGAGT+CGG + chr1_2:41306992-41307011 None:intergenic 70.0%
! AGGGTGGCAGACGGCGGGTT+CGG + chr1_2:41307058-41307077 None:intergenic 70.0%
GGTGAAGGGTGGCAGACGGC+GGG + chr1_2:41307063-41307082 None:intergenic 70.0%
! AGACGGCGGGTTCGGCGGTG+TGG + chr1_2:41307050-41307069 None:intergenic 75.0%
! GTGGCAGACGGCGGGTTCGG+CGG + chr1_2:41307055-41307074 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 41306817 41312017 41306817 ID=Msa0070670;Name=Msa0070670
chr1_2 mRNA 41306817 41312017 41306817 ID=Msa0070670-mRNA-1;Parent=Msa0070670;Name=Msa0070670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=57|0.66|0.71|1|0.83|1|7|377|310
chr1_2 exon 41306817 41307312 41306817 ID=Msa0070670-mRNA-1:exon:12646;Parent=Msa0070670-mRNA-1
chr1_2 exon 41308964 41309035 41308964 ID=Msa0070670-mRNA-1:exon:12645;Parent=Msa0070670-mRNA-1
chr1_2 exon 41309285 41309439 41309285 ID=Msa0070670-mRNA-1:exon:12644;Parent=Msa0070670-mRNA-1
chr1_2 exon 41309540 41309640 41309540 ID=Msa0070670-mRNA-1:exon:12643;Parent=Msa0070670-mRNA-1
chr1_2 exon 41310125 41310251 41310125 ID=Msa0070670-mRNA-1:exon:12642;Parent=Msa0070670-mRNA-1
chr1_2 exon 41311465 41311520 41311465 ID=Msa0070670-mRNA-1:exon:12641;Parent=Msa0070670-mRNA-1
chr1_2 exon 41311658 41312017 41311658 ID=Msa0070670-mRNA-1:exon:12640;Parent=Msa0070670-mRNA-1
chr1_2 five_prime_UTR 41311961 41312017 41311961 ID=Msa0070670-mRNA-1:five_prime_utr;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41311658 41311960 41311658 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41311465 41311520 41311465 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41310125 41310251 41310125 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41309540 41309640 41309540 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41309285 41309439 41309285 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41308964 41309035 41308964 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 CDS 41307194 41307312 41307194 ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2 three_prime_UTR 41306817 41307193 41306817 ID=Msa0070670-mRNA-1:three_prime_utr;Parent=Msa0070670-mRNA-1
Gene Sequence

>Msa0070670

ATGGCAGTGTCACATTCACTTCTCCGTTTAGCTCCTTCCCGTTTCACTAAACCACTTCACATCTTTTCATTCTCATTTTCCACCACCTCACCACCTCCGATTCGAGTCTCTCTCACCGACTCCGTAGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGTGATCTCATCCACACCGCCGAACCCGCCGTCTGCCACCCTTCACCTTCCTCCCCTCACCCCGTTTGCTACTCTTGCCTCGCCAGGCTCCCTAACCTCTCATCCCGCTTTTGTTCCCACCCTTGCCACCAACGCACTCAGGAATACCACGATGTTGAGATGAGAGCAAATTGGACTGATTTTGATAATTATTGCCGGAACCGGGGTTTAAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAGTTTGACACCTGAGATGATTTTAGAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAAATTGCTTGTATCCTTCTTTTAGGAACATTTTGTTTGAATGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCCGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTCCTTCCTTCTATAATCATGACTATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGTCTGGACCGCGATGCTCGACGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGTAGGTGCTCGCATGGTGATTAG

Protein sequence

>Msa0070670

MAVSHSLLRLAPSRFTKPLHIFSFSFSTTSPPPIRVSLTDSVGRAVFATRPIPTGDLIHTAEPAVCHPSPSSPHPVCYSCLARLPNLSSRFCSHPCHQRTQEYHDVEMRANWTDFDNYCRNRGLKFPFLVKRLACMIISGVARSDSLDILQPASLTPEMILEMEEGFNLLRNAFTKALIADEQIACILLLGTFCLNVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDYPNAHIIWIDNAVAKLKALRDIDEGEELRICYIDASLDRDARRELLFQGFGFQCNCSRCSHGD*