AlfalfaGEDB | Msa0070670

M. sativa cultivar zhongmu-4 / Msa0070670

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070670	sp\|Q9FG08\|ATXR4_ARATH	57.292	288	114	3	30	310	40	325	2.46e-110	326

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070670	A0A396JSM6	87.658	316	31	3	1	310	1	314	0.0	541

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TFs/TRs:

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Gene ID	Type	Classification
Msa0070670	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0070670	Msa0118560	0.962220	1.280774e-120	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070670	MtrunA17_Chr1g0176091	87.658	316	31	3	1	310	1	314	0.0	541

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070670	AT5G06620.1	57.292	288	114	3	30	310	40	325	2.50e-111	326
Msa0070670	AT5G06620.2	53.049	164	71	1	31	188	41	204	4.72e-55	179

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Find 108 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGGGATGAGAGGTTA+GGG	0.501592	1_2:+41311687	None:intergenic
AACAAAATGTTCCTAAAAGA+AGG	0.455685	1_2:+41309544	None:intergenic
AACCTTCATCAATGTCACGG+AGG	0.727757	1_2:+41308961	None:intergenic
AAGAGGGGTTCAACTTGCTA+AGG	0.581272	1_2:-41309614	Msa0070670:CDS
AAGAGTAGCAAACGGGGTGA+GGG	0.461472	1_2:+41311723	None:intergenic
AAGTCAAACTTCATAAATAT+AGG	0.451486	1_2:-41306882	Msa0070670:three_prime_UTR
AATATTAAGTGGTTGGATAC+AGG	0.402577	1_2:-41307137	Msa0070670:three_prime_UTR
AATCATCTCAGGTGTCAAAC+TGG	0.423936	1_2:+41310131	None:intergenic
AATCGGAGGTGGTGAGGTGG+TGG	0.512335	1_2:+41311859	None:intergenic
AATGCACCTGAGTGCGTTGG+TGG	0.558601	1_2:+41311651	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTATGTAGTTGAACTGAAA+TGG	-	chr1_2:41306855-41306874	Msa0070670:three_prime_UTR	30.0%
GTGCATGTAAAATGTAATGT+AGG	-	chr1_2:41307238-41307257	Msa0070670:CDS	30.0%
TTAGAGAAAAACTCTCATAC+CGG	+	chr1_2:41307370-41307389	None:intergenic	30.0%
TTAAAGATTGTTGAAACCCA+TGG	+	chr1_2:41307419-41307438	None:intergenic	30.0%
ATGAGACTAATCTTTCTCTT+TGG	-	chr1_2:41307455-41307474	Msa0070670:intron	30.0%
AAACAGATAAGTGAACTTAG+GGG	+	chr1_2:41307566-41307585	None:intergenic	30.0%
GTAAACAGATAAGTGAACTT+AGG	+	chr1_2:41307568-41307587	None:intergenic	30.0%
CTTATCTGTTTACTAGTGTA+AGG	-	chr1_2:41307575-41307594	Msa0070670:intron	30.0%
AAATTTCAAACCACCAAAAC+AGG	+	chr1_2:41307709-41307728	None:intergenic	30.0%
TATACAAACTCACAATGATG+AGG	-	chr1_2:41307736-41307755	Msa0070670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	41306817	41312017	41306817	ID=Msa0070670;Name=Msa0070670
chr1_2	mRNA	41306817	41312017	41306817	ID=Msa0070670-mRNA-1;Parent=Msa0070670;Name=Msa0070670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=57\|0.66\|0.71\|1\|0.83\|1\|7\|377\|310
chr1_2	exon	41306817	41307312	41306817	ID=Msa0070670-mRNA-1:exon:12646;Parent=Msa0070670-mRNA-1
chr1_2	exon	41308964	41309035	41308964	ID=Msa0070670-mRNA-1:exon:12645;Parent=Msa0070670-mRNA-1
chr1_2	exon	41309285	41309439	41309285	ID=Msa0070670-mRNA-1:exon:12644;Parent=Msa0070670-mRNA-1
chr1_2	exon	41309540	41309640	41309540	ID=Msa0070670-mRNA-1:exon:12643;Parent=Msa0070670-mRNA-1
chr1_2	exon	41310125	41310251	41310125	ID=Msa0070670-mRNA-1:exon:12642;Parent=Msa0070670-mRNA-1
chr1_2	exon	41311465	41311520	41311465	ID=Msa0070670-mRNA-1:exon:12641;Parent=Msa0070670-mRNA-1
chr1_2	exon	41311658	41312017	41311658	ID=Msa0070670-mRNA-1:exon:12640;Parent=Msa0070670-mRNA-1
chr1_2	five_prime_UTR	41311961	41312017	41311961	ID=Msa0070670-mRNA-1:five_prime_utr;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41311658	41311960	41311658	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41311465	41311520	41311465	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41310125	41310251	41310125	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41309540	41309640	41309540	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41309285	41309439	41309285	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41308964	41309035	41308964	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	CDS	41307194	41307312	41307194	ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1
chr1_2	three_prime_UTR	41306817	41307193	41306817	ID=Msa0070670-mRNA-1:three_prime_utr;Parent=Msa0070670-mRNA-1

Gene Sequence

>Msa0070670

ATGGCAGTGTCACATTCACTTCTCCGTTTAGCTCCTTCCCGTTTCACTAAACCACTTCACATCTTTTCATTCTCATTTTCCACCACCTCACCACCTCCGATTCGAGTCTCTCTCACCGACTCCGTAGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGTGATCTCATCCACACCGCCGAACCCGCCGTCTGCCACCCTTCACCTTCCTCCCCTCACCCCGTTTGCTACTCTTGCCTCGCCAGGCTCCCTAACCTCTCATCCCGCTTTTGTTCCCACCCTTGCCACCAACGCACTCAGGAATACCACGATGTTGAGATGAGAGCAAATTGGACTGATTTTGATAATTATTGCCGGAACCGGGGTTTAAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAGTTTGACACCTGAGATGATTTTAGAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAAATTGCTTGTATCCTTCTTTTAGGAACATTTTGTTTGAATGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCCGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTCCTTCCTTCTATAATCATGACTATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGTCTGGACCGCGATGCTCGACGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGTAGGTGCTCGCATGGTGATTAG

Protein sequence

>Msa0070670

MAVSHSLLRLAPSRFTKPLHIFSFSFSTTSPPPIRVSLTDSVGRAVFATRPIPTGDLIHTAEPAVCHPSPSSPHPVCYSCLARLPNLSSRFCSHPCHQRTQEYHDVEMRANWTDFDNYCRNRGLKFPFLVKRLACMIISGVARSDSLDILQPASLTPEMILEMEEGFNLLRNAFTKALIADEQIACILLLGTFCLNVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDYPNAHIIWIDNAVAKLKALRDIDEGEELRICYIDASLDRDARRELLFQGFGFQCNCSRCSHGD*