Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070670 | sp|Q9FG08|ATXR4_ARATH | 57.292 | 288 | 114 | 3 | 30 | 310 | 40 | 325 | 2.46e-110 | 326 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070670 | A0A396JSM6 | 87.658 | 316 | 31 | 3 | 1 | 310 | 1 | 314 | 0.0 | 541 |
Gene ID | Type | Classification |
---|---|---|
Msa0070670 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0070670 | Msa0118560 | 0.962220 | 1.280774e-120 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070670 | MtrunA17_Chr1g0176091 | 87.658 | 316 | 31 | 3 | 1 | 310 | 1 | 314 | 0.0 | 541 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070670 | AT5G06620.1 | 57.292 | 288 | 114 | 3 | 30 | 310 | 40 | 325 | 2.50e-111 | 326 |
Msa0070670 | AT5G06620.2 | 53.049 | 164 | 71 | 1 | 31 | 188 | 41 | 204 | 4.72e-55 | 179 |
Find 108 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGTTTAAAATTTCCCTTTC+TGG | 0.140471 | 1_2:-41310223 | Msa0070670:CDS |
ATGTAAACCTGCTCAAATTT+TGG | 0.164511 | 1_2:-41307109 | Msa0070670:three_prime_UTR |
ATCCCAATGCACACATTATA+TGG | 0.261658 | 1_2:-41309013 | Msa0070670:CDS |
GAACTATTGTTTCAAGGTTT+CGG | 0.307912 | 1_2:-41307234 | Msa0070670:CDS |
AGGGTGGCAGACGGCGGGTT+CGG | 0.369692 | 1_2:+41311757 | None:intergenic |
CTGCTATATTGATGCCAGTC+TGG | 0.385411 | 1_2:-41307274 | Msa0070670:CDS |
TATGTCAAGACTGTCACTTC+TGG | 0.385509 | 1_2:+41310164 | None:intergenic |
CGCATTGAGTTGGCTGGTGG+TGG | 0.393454 | 1_2:-41309386 | Msa0070670:CDS |
CGACGAGAACTATTGTTTCA+AGG | 0.397593 | 1_2:-41307240 | Msa0070670:CDS |
AGCATTTCCAACAGCAGCTT+CGG | 0.399684 | 1_2:+41309319 | None:intergenic |
ACAATGGTACATCAGTGTTT+TGG | 0.402161 | 1_2:-41309432 | Msa0070670:intron |
AATATTAAGTGGTTGGATAC+AGG | 0.402577 | 1_2:-41307137 | Msa0070670:three_prime_UTR |
TTGCTATACTTAATTTATGA+TGG | 0.405618 | 1_2:+41307009 | None:intergenic |
CAAAAGCGGGATGAGAGGTT+AGG | 0.405960 | 1_2:+41311686 | None:intergenic |
TTTGCTACTCTTGCCTCGCC+AGG | 0.409626 | 1_2:-41311712 | Msa0070670:CDS |
GAGGGGAGGAAGGTGAAGGG+TGG | 0.412983 | 1_2:+41311741 | None:intergenic |
TTGGCTTGCATGATCATATC+AGG | 0.415237 | 1_2:-41310192 | Msa0070670:CDS |
GTGAAGTGGTTTAGTGAAAC+GGG | 0.419593 | 1_2:+41311901 | None:intergenic |
GGATGAGAGGTTAGGGAGCC+TGG | 0.419601 | 1_2:+41311694 | None:intergenic |
AATCATCTCAGGTGTCAAAC+TGG | 0.423936 | 1_2:+41310131 | None:intergenic |
CAAGAGTAGCAAACGGGGTG+AGG | 0.430548 | 1_2:+41311722 | None:intergenic |
GCCACAGTCATGATTATAGA+AGG | 0.431746 | 1_2:+41309280 | None:intergenic |
TTATAACAGAAAGTTGGTTA+TGG | 0.437761 | 1_2:+41307060 | None:intergenic |
CTAGGATTTGCAATATTAAG+TGG | 0.439299 | 1_2:-41307148 | Msa0070670:three_prime_UTR |
TGAGATCACCGGTAGGGATT+GGG | 0.440187 | 1_2:+41311789 | None:intergenic |
ATCCATATAATGTGTGCATT+GGG | 0.443622 | 1_2:+41309011 | None:intergenic |
AAGTCAAACTTCATAAATAT+AGG | 0.451486 | 1_2:-41306882 | Msa0070670:three_prime_UTR |
ATGAGATCACCGGTAGGGAT+TGG | 0.451811 | 1_2:+41311788 | None:intergenic |
TCCCTTTCTGGTAAAGCGGT+TGG | 0.454495 | 1_2:-41310211 | Msa0070670:CDS |
GGGTGAGGGGAGGAAGGTGA+AGG | 0.455595 | 1_2:+41311737 | None:intergenic |
AACAAAATGTTCCTAAAAGA+AGG | 0.455685 | 1_2:+41309544 | None:intergenic |
TATCCATATAATGTGTGCAT+TGG | 0.459802 | 1_2:+41309010 | None:intergenic |
AAGAGTAGCAAACGGGGTGA+GGG | 0.461472 | 1_2:+41311723 | None:intergenic |
AGCATTCAATATATATTTCG+TGG | 0.461655 | 1_2:-41307032 | Msa0070670:three_prime_UTR |
GCAAGGGTGGGAACAAAAGC+GGG | 0.463201 | 1_2:+41311673 | None:intergenic |
TAAATACCCAAAATTTGAGC+AGG | 0.469821 | 1_2:+41307102 | None:intergenic |
GCGAGGCAAGAGTAGCAAAC+GGG | 0.470976 | 1_2:+41311716 | None:intergenic |
GGCAAGGGTGGGAACAAAAG+CGG | 0.472237 | 1_2:+41311672 | None:intergenic |
TCGAGCATCGCGGTCCAGAC+TGG | 0.473277 | 1_2:+41307260 | None:intergenic |
ACCTGAGTGCGTTGGTGGCA+AGG | 0.476597 | 1_2:+41311656 | None:intergenic |
TAATGCAGTGGCAAAATTGA+AGG | 0.480874 | 1_2:-41308985 | Msa0070670:CDS |
CAATGCATTTCGCATTGAGT+TGG | 0.481923 | 1_2:-41309396 | Msa0070670:CDS |
GAGTGCGTTGGTGGCAAGGG+TGG | 0.484991 | 1_2:+41311660 | None:intergenic |
GGTGAAGGGTGGCAGACGGC+GGG | 0.490528 | 1_2:+41311752 | None:intergenic |
GCCAACCGCTTTACCAGAAA+GGG | 0.492202 | 1_2:+41310210 | None:intergenic |
TGTATGTAGTTGAACTGAAA+TGG | 0.496566 | 1_2:-41311957 | Msa0070670:exon |
GATTTGCAATATTAAGTGGT+TGG | 0.497852 | 1_2:-41307144 | Msa0070670:three_prime_UTR |
TGTGAAGTGGTTTAGTGAAA+CGG | 0.500644 | 1_2:+41311900 | None:intergenic |
AAAAGCGGGATGAGAGGTTA+GGG | 0.501592 | 1_2:+41311687 | None:intergenic |
ATCTCAGGTGTCAAACTGGC+AGG | 0.503541 | 1_2:+41310135 | None:intergenic |
CCTGAGTGCGTTGGTGGCAA+GGG | 0.508044 | 1_2:+41311657 | None:intergenic |
CTCACCTCTAAAATCATCTC+AGG | 0.511645 | 1_2:+41310120 | None:intergenic |
AGCCAACCGCTTTACCAGAA+AGG | 0.512299 | 1_2:+41310209 | None:intergenic |
AATCGGAGGTGGTGAGGTGG+TGG | 0.512335 | 1_2:+41311859 | None:intergenic |
GGCGAGGCAAGAGTAGCAAA+CGG | 0.513389 | 1_2:+41311715 | None:intergenic |
ATGTTGAGATGAGAGCAAAT+TGG | 0.513802 | 1_2:-41311488 | Msa0070670:CDS |
GCCCTCCGTGACATTGATGA+AGG | 0.515818 | 1_2:-41308963 | Msa0070670:intron |
ACAGAATACAAGAAGAAAGT+AGG | 0.517697 | 1_2:+41306974 | None:intergenic |
CAAACGGGGTGAGGGGAGGA+AGG | 0.521659 | 1_2:+41311731 | None:intergenic |
TGCGAAGACGGCGCGACCTA+CGG | 0.522245 | 1_2:+41311817 | None:intergenic |
GATTGGGCGAGTTGCGAAGA+CGG | 0.524161 | 1_2:+41311805 | None:intergenic |
GCATTTCGCATTGAGTTGGC+TGG | 0.527315 | 1_2:-41309392 | Msa0070670:CDS |
AGGTGAAGGGTGGCAGACGG+CGG | 0.534390 | 1_2:+41311751 | None:intergenic |
TGCAATAAGTGCCTTTGTGA+AGG | 0.535808 | 1_2:+41309587 | None:intergenic |
GTAGAAGCCGAAGCTGCTGT+TGG | 0.536645 | 1_2:-41309326 | Msa0070670:CDS |
AGTGCGTTGGTGGCAAGGGT+GGG | 0.538355 | 1_2:+41311661 | None:intergenic |
GGTGAGGGGAGGAAGGTGAA+GGG | 0.538492 | 1_2:+41311738 | None:intergenic |
GGAAGGTGAAGGGTGGCAGA+CGG | 0.544300 | 1_2:+41311748 | None:intergenic |
TTGTGTTTATAACAGAAAGT+TGG | 0.547840 | 1_2:+41307054 | None:intergenic |
GTGGCAGACGGCGGGTTCGG+CGG | 0.556828 | 1_2:+41311760 | None:intergenic |
AATGCACCTGAGTGCGTTGG+TGG | 0.558601 | 1_2:+41311651 | None:intergenic |
AGAGTAGCAAACGGGGTGAG+GGG | 0.558878 | 1_2:+41311724 | None:intergenic |
GTAGCAAACGGGGTGAGGGG+AGG | 0.564387 | 1_2:+41311727 | None:intergenic |
CCCTTGCCACCAACGCACTC+AGG | 0.567423 | 1_2:-41311657 | Msa0070670:intron |
AGAGAGACTCGAATCGGAGG+TGG | 0.568166 | 1_2:+41311848 | None:intergenic |
AGACGGCGGGTTCGGCGGTG+TGG | 0.568637 | 1_2:+41311765 | None:intergenic |
GCAACTCGCCCAATCCCTAC+CGG | 0.570799 | 1_2:-41311797 | Msa0070670:CDS |
GACTCGAATCGGAGGTGGTG+AGG | 0.579357 | 1_2:+41311853 | None:intergenic |
AAGAGGGGTTCAACTTGCTA+AGG | 0.581272 | 1_2:-41309614 | Msa0070670:CDS |
TGAAACGGGAAGGAGCTAAA+CGG | 0.583529 | 1_2:+41311915 | None:intergenic |
AATTTCCCTTTCTGGTAAAG+CGG | 0.590443 | 1_2:-41310215 | Msa0070670:CDS |
GGGAACAAAAGCGGGATGAG+AGG | 0.592712 | 1_2:+41311681 | None:intergenic |
TCGGTGAGAGAGACTCGAAT+CGG | 0.592931 | 1_2:+41311842 | None:intergenic |
CACTTAATATTGCAAATCCT+AGG | 0.595534 | 1_2:+41307149 | None:intergenic |
CAGTCATGATTATAGAAGGA+AGG | 0.596544 | 1_2:+41309284 | None:intergenic |
GGCGGTGTGGATGAGATCAC+CGG | 0.599696 | 1_2:+41311778 | None:intergenic |
AGAGGTTAGGGAGCCTGGCG+AGG | 0.601381 | 1_2:+41311699 | None:intergenic |
GAGAATGAAAAGATGTGAAG+TGG | 0.605679 | 1_2:+41311887 | None:intergenic |
ACCTTCATCAATGTCACGGA+GGG | 0.613577 | 1_2:+41308962 | None:intergenic |
GACGGCGCGACCTACGGAGT+CGG | 0.623769 | 1_2:+41311823 | None:intergenic |
GTGAGAGAGACTCGAATCGG+AGG | 0.630122 | 1_2:+41311845 | None:intergenic |
TCGAATCGGAGGTGGTGAGG+TGG | 0.632428 | 1_2:+41311856 | None:intergenic |
TTTCGCATTGAGTTGGCTGG+TGG | 0.638184 | 1_2:-41309389 | Msa0070670:CDS |
ATGATCATGCAATTCAAGTG+TGG | 0.638581 | 1_2:+41306924 | None:intergenic |
TGTGGATGAGATCACCGGTA+GGG | 0.641895 | 1_2:+41311783 | None:intergenic |
ACAAACCTTCATCAATGTCA+CGG | 0.645369 | 1_2:+41308958 | None:intergenic |
GTCTCTCTCACCGACTCCGT+AGG | 0.654378 | 1_2:-41311833 | Msa0070670:CDS |
AATTGTAGTAGGTGCTCGCA+TGG | 0.655029 | 1_2:-41307201 | Msa0070670:CDS |
GTGTGGATGAGATCACCGGT+AGG | 0.663265 | 1_2:+41311782 | None:intergenic |
TCAACTACATACAACGAACA+AGG | 0.671843 | 1_2:+41311967 | None:intergenic |
CGAGGCAAGAGTAGCAAACG+GGG | 0.672756 | 1_2:+41311717 | None:intergenic |
GCTAAGGAATGCCTTCACAA+AGG | 0.678500 | 1_2:-41309598 | Msa0070670:CDS |
AGTGGTTTAGTGAAACGGGA+AGG | 0.687792 | 1_2:+41311905 | None:intergenic |
TATATGGATAGATAATGCAG+TGG | 0.693112 | 1_2:-41308997 | Msa0070670:CDS |
GTGATAAATTGTGTAATGTG+TGG | 0.703416 | 1_2:-41306825 | Msa0070670:three_prime_UTR |
TTGCTCTCATCTCAACATCG+TGG | 0.722442 | 1_2:+41311493 | None:intergenic |
AACCTTCATCAATGTCACGG+AGG | 0.727757 | 1_2:+41308961 | None:intergenic |
ATAGTTCTCGTCGAGCATCG+CGG | 0.732025 | 1_2:+41307250 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTTTATTTTATTTTT+TGG | + | chr1_2:41307525-41307544 | None:intergenic | 0.0% |
!!! | TTTGGGATTTTTATATTTAT+AGG | - | chr1_2:41307292-41307311 | Msa0070670:CDS | 15.0% |
!! | AAAACATAAAAACAATAACA+AGG | + | chr1_2:41307681-41307700 | None:intergenic | 15.0% |
!! | AATCAAATAAAATACAATTG+AGG | + | chr1_2:41309880-41309899 | None:intergenic | 15.0% |
!! | ATTAGATATCATAAGAATTT+AGG | + | chr1_2:41310897-41310916 | None:intergenic | 15.0% |
!! | ATAAAATGTAGAACTTAATT+AGG | - | chr1_2:41311298-41311317 | Msa0070670:intron | 15.0% |
!!! | ACAAACATGTATACTTATTT+TGG | - | chr1_2:41307274-41307293 | Msa0070670:CDS | 20.0% |
!!! | CAAACATGTATACTTATTTT+GGG | - | chr1_2:41307275-41307294 | Msa0070670:CDS | 20.0% |
!!! | ATTTTTTGGTTCAAGAATTA+TGG | + | chr1_2:41307511-41307530 | None:intergenic | 20.0% |
!!! | ATCAAAATTTTAAGTACAAG+GGG | + | chr1_2:41308218-41308237 | None:intergenic | 20.0% |
!!! | GATCAAAATTTTAAGTACAA+GGG | + | chr1_2:41308219-41308238 | None:intergenic | 20.0% |
!!! | TGATCAAAATTTTAAGTACA+AGG | + | chr1_2:41308220-41308239 | None:intergenic | 20.0% |
!! | TTATGTATAGCACTAAAAAA+AGG | - | chr1_2:41308285-41308304 | Msa0070670:intron | 20.0% |
!! | TATGTATAGCACTAAAAAAA+GGG | - | chr1_2:41308286-41308305 | Msa0070670:intron | 20.0% |
!! | GTTTCAGTAATTTATCATTA+CGG | + | chr1_2:41308471-41308490 | None:intergenic | 20.0% |
!!! | AATTGTCATTTAGGTAATTT+TGG | + | chr1_2:41308544-41308563 | None:intergenic | 20.0% |
!! | GAAAATATGCATTAATTGAA+GGG | + | chr1_2:41308821-41308840 | None:intergenic | 20.0% |
!! | AGAAAATATGCATTAATTGA+AGG | + | chr1_2:41308822-41308841 | None:intergenic | 20.0% |
!!! | TTTTCACTTATAATCAATAC+CGG | - | chr1_2:41308953-41308972 | Msa0070670:intron | 20.0% |
!! | TTCAATTTGAACATCAATAA+TGG | + | chr1_2:41309106-41309125 | None:intergenic | 20.0% |
!!! | ATTGAAGTTTGATAAAGTTT+TGG | - | chr1_2:41309120-41309139 | Msa0070670:intron | 20.0% |
!!! | TATAAACATCATTTTTCAGA+TGG | - | chr1_2:41309175-41309194 | Msa0070670:intron | 20.0% |
!!! | TTTAAGTTTTAACCAAACAA+TGG | - | chr1_2:41309364-41309383 | Msa0070670:CDS | 20.0% |
!!! | TTTTTCCCTTTTAATTTTGT+AGG | - | chr1_2:41309905-41309924 | Msa0070670:intron | 20.0% |
!!! | TTGTTGATAAAACATGATAT+AGG | + | chr1_2:41310036-41310055 | None:intergenic | 20.0% |
!! | TGATTGATGTTATAAAAGAT+GGG | + | chr1_2:41310146-41310165 | None:intergenic | 20.0% |
!! | ATGATTGATGTTATAAAAGA+TGG | + | chr1_2:41310147-41310166 | None:intergenic | 20.0% |
!!! | ATTAAGAAAGAGGTTTTAAA+AGG | + | chr1_2:41310193-41310212 | None:intergenic | 20.0% |
!! | CAATAAAACTATTAAGAAAG+AGG | + | chr1_2:41310203-41310222 | None:intergenic | 20.0% |
!!! | GAATAACTACATTCTAAAAT+TGG | + | chr1_2:41311166-41311185 | None:intergenic | 20.0% |
!! | AAAAATTTGACTGAAAATCA+AGG | + | chr1_2:41311242-41311261 | None:intergenic | 20.0% |
!!! | GTTGATCAAATGATAATTTT+AGG | + | chr1_2:41311477-41311496 | None:intergenic | 20.0% |
!! | TTGCTATACTTAATTTATGA+TGG | + | chr1_2:41311806-41311825 | None:intergenic | 20.0% |
!!! | TTTTATTGTTAAACATCACT+AGG | - | chr1_2:41311860-41311879 | Msa0070670:CDS | 20.0% |
!! | AAGTCAAACTTCATAAATAT+AGG | - | chr1_2:41311930-41311949 | Msa0070670:CDS | 20.0% |
!!! | CTGATTTTGATAATTATTGC+CGG | - | chr1_2:41307348-41307367 | Msa0070670:intron | 25.0% |
! | AAGCAGTTTAATATGTTCTA+TGG | - | chr1_2:41307484-41307503 | Msa0070670:intron | 25.0% |
! | TAAACAGATAAGTGAACTTA+GGG | + | chr1_2:41307567-41307586 | None:intergenic | 25.0% |
! | AAACAACACTTTATTCACTT+TGG | - | chr1_2:41307962-41307981 | Msa0070670:intron | 25.0% |
!!! | GAATTTTCTAATTTAGCTTG+TGG | - | chr1_2:41308018-41308037 | Msa0070670:intron | 25.0% |
!! | AGGAACAAAGTAATTTTCAA+AGG | - | chr1_2:41308064-41308083 | Msa0070670:intron | 25.0% |
!!! | TCAAAATTTTAAGTACAAGG+GGG | + | chr1_2:41308217-41308236 | None:intergenic | 25.0% |
! | CAATAAAATACTATAAGCTG+AGG | + | chr1_2:41308519-41308538 | None:intergenic | 25.0% |
!!! | CATTAATTGAAGGGTATTTT+AGG | + | chr1_2:41308812-41308831 | None:intergenic | 25.0% |
!!! | TTTCATTTACCCTTTTTTCT+CGG | - | chr1_2:41309008-41309027 | Msa0070670:CDS | 25.0% |
! | GAAATACAATGATTTACAGA+AGG | + | chr1_2:41309069-41309088 | None:intergenic | 25.0% |
! | AACAAAATGTTCCTAAAAGA+AGG | + | chr1_2:41309271-41309290 | None:intergenic | 25.0% |
! | AAATGAACAATCTCACTTAT+TGG | - | chr1_2:41309768-41309787 | Msa0070670:intron | 25.0% |
! | AAAACATGATATAGGCAAAA+AGG | + | chr1_2:41310028-41310047 | None:intergenic | 25.0% |
!! | CATGTTTTATCAACAAAATC+TGG | - | chr1_2:41310040-41310059 | Msa0070670:intron | 25.0% |
!!! | ACTCTTCTGAAATAAAATCA+GGG | + | chr1_2:41310624-41310643 | None:intergenic | 25.0% |
!!! | AACTCTTCTGAAATAAAATC+AGG | + | chr1_2:41310625-41310644 | None:intergenic | 25.0% |
! | AAGAAAGAAAACAAGACATT+GGG | + | chr1_2:41310716-41310735 | None:intergenic | 25.0% |
! | TAAGAAAGAAAACAAGACAT+TGG | + | chr1_2:41310717-41310736 | None:intergenic | 25.0% |
!! | GTATTACAGAGTATTAGATA+AGG | - | chr1_2:41310758-41310777 | Msa0070670:intron | 25.0% |
! | CTATTATTGATCGACAATTA+TGG | - | chr1_2:41310786-41310805 | Msa0070670:intron | 25.0% |
! | TAGCTCATTAATCAAACAAA+TGG | - | chr1_2:41311063-41311082 | Msa0070670:intron | 25.0% |
! | AATTGGATGATTACATACAT+TGG | + | chr1_2:41311149-41311168 | None:intergenic | 25.0% |
! | CTATAAGAGAATAACTATGA+AGG | + | chr1_2:41311273-41311292 | None:intergenic | 25.0% |
! | TTTCTTACATTTGTGATAGA+AGG | - | chr1_2:41311392-41311411 | Msa0070670:intron | 25.0% |
!! | TTATAACAGAAAGTTGGTTA+TGG | + | chr1_2:41311755-41311774 | None:intergenic | 25.0% |
! | TTGTGTTTATAACAGAAAGT+TGG | + | chr1_2:41311761-41311780 | None:intergenic | 25.0% |
! | AGCATTCAATATATATTTCG+TGG | - | chr1_2:41311780-41311799 | Msa0070670:CDS | 25.0% |
TGTATGTAGTTGAACTGAAA+TGG | - | chr1_2:41306855-41306874 | Msa0070670:three_prime_UTR | 30.0% | |
GTGCATGTAAAATGTAATGT+AGG | - | chr1_2:41307238-41307257 | Msa0070670:CDS | 30.0% | |
TTAGAGAAAAACTCTCATAC+CGG | + | chr1_2:41307370-41307389 | None:intergenic | 30.0% | |
TTAAAGATTGTTGAAACCCA+TGG | + | chr1_2:41307419-41307438 | None:intergenic | 30.0% | |
ATGAGACTAATCTTTCTCTT+TGG | - | chr1_2:41307455-41307474 | Msa0070670:intron | 30.0% | |
AAACAGATAAGTGAACTTAG+GGG | + | chr1_2:41307566-41307585 | None:intergenic | 30.0% | |
GTAAACAGATAAGTGAACTT+AGG | + | chr1_2:41307568-41307587 | None:intergenic | 30.0% | |
CTTATCTGTTTACTAGTGTA+AGG | - | chr1_2:41307575-41307594 | Msa0070670:intron | 30.0% | |
! | TATGTTTTCGTTACCTGTTT+TGG | - | chr1_2:41307693-41307712 | Msa0070670:intron | 30.0% |
AAATTTCAAACCACCAAAAC+AGG | + | chr1_2:41307709-41307728 | None:intergenic | 30.0% | |
TATACAAACTCACAATGATG+AGG | - | chr1_2:41307736-41307755 | Msa0070670:intron | 30.0% | |
ATACAAACTCACAATGATGA+GGG | - | chr1_2:41307737-41307756 | Msa0070670:intron | 30.0% | |
CAAAATTGTGTCTCAGATAA+AGG | - | chr1_2:41308105-41308124 | Msa0070670:intron | 30.0% | |
!! | AGTTGAATGCTTTGTTTGTT+GGG | - | chr1_2:41308183-41308202 | Msa0070670:intron | 30.0% |
CTTGTGTTAAAAACAAGGTA+TGG | + | chr1_2:41308386-41308405 | None:intergenic | 30.0% | |
!!! | TACCTTGTTTTTAACACAAG+AGG | - | chr1_2:41308386-41308405 | Msa0070670:intron | 30.0% |
! | AGGTTAGGTAATTGTCATTT+AGG | + | chr1_2:41308553-41308572 | None:intergenic | 30.0% |
! | ATTACCTAACCTCTTTTCAA+AGG | - | chr1_2:41308561-41308580 | Msa0070670:intron | 30.0% |
! | CAATGACTCTTTTATTCTCA+TGG | - | chr1_2:41308846-41308865 | Msa0070670:intron | 30.0% |
!! | ATCATTTTTCAGATGGAAGA+GGG | - | chr1_2:41309182-41309201 | Msa0070670:intron | 30.0% |
! | ATTGCTTGTATCCTTCTTTT+AGG | - | chr1_2:41309257-41309276 | Msa0070670:intron | 30.0% |
TGTTGAGAGATTACTTATCT+TGG | - | chr1_2:41309338-41309357 | Msa0070670:CDS | 30.0% | |
GAAATATAAGCTCATGTTGA+CGG | + | chr1_2:41309588-41309607 | None:intergenic | 30.0% | |
AATATTTGCCTTCCATGTTT+AGG | - | chr1_2:41309674-41309693 | Msa0070670:intron | 30.0% | |
TACATGATTTCTCCTAAACA+TGG | + | chr1_2:41309689-41309708 | None:intergenic | 30.0% | |
AAAAATGACAAGGTTTAGAG+AGG | + | chr1_2:41309739-41309758 | None:intergenic | 30.0% | |
ATCCATATAATGTGTGCATT+GGG | + | chr1_2:41309804-41309823 | None:intergenic | 30.0% | |
TATCCATATAATGTGTGCAT+TGG | + | chr1_2:41309805-41309824 | None:intergenic | 30.0% | |
TATATGGATAGATAATGCAG+TGG | - | chr1_2:41309815-41309834 | Msa0070670:intron | 30.0% | |
!!! | TCCCTTTTAATTTTGTAGGA+TGG | - | chr1_2:41309909-41309928 | Msa0070670:intron | 30.0% |
GCCATCCTACAAAATTAAAA+GGG | + | chr1_2:41309913-41309932 | None:intergenic | 30.0% | |
AGCCATCCTACAAAATTAAA+AGG | + | chr1_2:41309914-41309933 | None:intergenic | 30.0% | |
! | GATGTTATAAAAGATGGGTT+GGG | + | chr1_2:41310141-41310160 | None:intergenic | 30.0% |
TGATGTTATAAAAGATGGGT+TGG | + | chr1_2:41310142-41310161 | None:intergenic | 30.0% | |
AATCATTGACAGAACACTTT+AGG | - | chr1_2:41310161-41310180 | Msa0070670:CDS | 30.0% | |
TAGATTTGAATGACTTACCA+TGG | - | chr1_2:41310675-41310694 | Msa0070670:intron | 30.0% | |
AGAAAGAAAACAAGACATTG+GGG | + | chr1_2:41310715-41310734 | None:intergenic | 30.0% | |
TCATTCATGCAAGATATTAG+TGG | + | chr1_2:41311011-41311030 | None:intergenic | 30.0% | |
GGAATTAAAAGTTAGCTGTA+AGG | - | chr1_2:41311084-41311103 | Msa0070670:intron | 30.0% | |
TTACATACATTGGCATCTTA+TGG | + | chr1_2:41311139-41311158 | None:intergenic | 30.0% | |
ATTTGACTGAAAATCAAGGA+TGG | + | chr1_2:41311238-41311257 | None:intergenic | 30.0% | |
AACCATCTTTGTTAAATTGC+AGG | - | chr1_2:41311500-41311519 | Msa0070670:CDS | 30.0% | |
GAACTATTGTTTCAAGGTTT+CGG | - | chr1_2:41311578-41311597 | Msa0070670:intron | 30.0% | |
! | GTTTTCAATGCAATTGTAGT+AGG | - | chr1_2:41311600-41311619 | Msa0070670:intron | 30.0% |
TTTCTCCAAAAAATTCTCCT+AGG | - | chr1_2:41311646-41311665 | Msa0070670:intron | 30.0% | |
!!! | CAAATCCTAGGAGAATTTTT+TGG | + | chr1_2:41311654-41311673 | None:intergenic | 30.0% |
CACTTAATATTGCAAATCCT+AGG | + | chr1_2:41311666-41311685 | None:intergenic | 30.0% | |
CTAGGATTTGCAATATTAAG+TGG | - | chr1_2:41311664-41311683 | Msa0070670:CDS | 30.0% | |
GATTTGCAATATTAAGTGGT+TGG | - | chr1_2:41311668-41311687 | Msa0070670:CDS | 30.0% | |
AATATTAAGTGGTTGGATAC+AGG | - | chr1_2:41311675-41311694 | Msa0070670:CDS | 30.0% | |
! | ATGTAAACCTGCTCAAATTT+TGG | - | chr1_2:41311703-41311722 | Msa0070670:CDS | 30.0% |
! | TGTAAACCTGCTCAAATTTT+GGG | - | chr1_2:41311704-41311723 | Msa0070670:CDS | 30.0% |
TAAATACCCAAAATTTGAGC+AGG | + | chr1_2:41311713-41311732 | None:intergenic | 30.0% | |
ACAGAATACAAGAAGAAAGT+AGG | + | chr1_2:41311841-41311860 | None:intergenic | 30.0% | |
!!! | GATCATTTTTTTTACTGCAG+AGG | - | chr1_2:41311905-41311924 | Msa0070670:CDS | 30.0% |
GTGATAAATTGTGTAATGTG+TGG | - | chr1_2:41311987-41312006 | Msa0070670:five_prime_UTR | 30.0% | |
TCAACTACATACAACGAACA+AGG | + | chr1_2:41306848-41306867 | None:intergenic | 35.0% | |
TGTGAAGTGGTTTAGTGAAA+CGG | + | chr1_2:41306915-41306934 | None:intergenic | 35.0% | |
GAGAATGAAAAGATGTGAAG+TGG | + | chr1_2:41306928-41306947 | None:intergenic | 35.0% | |
TAACATGTTGATCTGCAAGA+AGG | + | chr1_2:41307215-41307234 | None:intergenic | 35.0% | |
ATGTTGAGATGAGAGCAAAT+TGG | - | chr1_2:41307324-41307343 | Msa0070670:intron | 35.0% | |
ATTAGCATCTTCAATTGCCA+TGG | - | chr1_2:41307399-41307418 | Msa0070670:intron | 35.0% | |
TTAGCATCTTCAATTGCCAT+GGG | - | chr1_2:41307400-41307419 | Msa0070670:intron | 35.0% | |
TGTTTACTAGTGTAAGGTCT+GGG | - | chr1_2:41307581-41307600 | Msa0070670:intron | 35.0% | |
TGAATCAGACTTATTGTTGG+AGG | + | chr1_2:41307617-41307636 | None:intergenic | 35.0% | |
GTCTGAATCAGACTTATTGT+TGG | + | chr1_2:41307620-41307639 | None:intergenic | 35.0% | |
TACAAACTCACAATGATGAG+GGG | - | chr1_2:41307738-41307757 | Msa0070670:intron | 35.0% | |
TAAAGTTGTTGTCATGTGAC+TGG | - | chr1_2:41307779-41307798 | Msa0070670:intron | 35.0% | |
AGCCTCTTGTGTAAAAAACA+GGG | - | chr1_2:41307829-41307848 | Msa0070670:intron | 35.0% | |
TCTTGTGTAAAAAACAGGGA+GGG | - | chr1_2:41307833-41307852 | Msa0070670:intron | 35.0% | |
!! | CTTTATTCACTTTGGTTCTC+TGG | - | chr1_2:41307970-41307989 | Msa0070670:intron | 35.0% |
!! | TAATTTAGCTTGTGGTGATG+TGG | - | chr1_2:41308026-41308045 | Msa0070670:intron | 35.0% |
!! | TCTGAGACACAATTTTGACA+AGG | + | chr1_2:41308102-41308121 | None:intergenic | 35.0% |
TCAGATAAAGGTCTCATCAT+GGG | - | chr1_2:41308117-41308136 | Msa0070670:intron | 35.0% | |
!! | GAGTTGAATGCTTTGTTTGT+TGG | - | chr1_2:41308182-41308201 | Msa0070670:intron | 35.0% |
AGCCTCTTGTGTTAAAAACA+AGG | + | chr1_2:41308391-41308410 | None:intergenic | 35.0% | |
TATTATGTGTAGCCCTATGA+TGG | - | chr1_2:41308423-41308442 | Msa0070670:intron | 35.0% | |
ATTATGTGTAGCCCTATGAT+GGG | - | chr1_2:41308424-41308443 | Msa0070670:intron | 35.0% | |
! | TAACCTCTTTTCAAAGGAAC+CGG | - | chr1_2:41308567-41308586 | Msa0070670:intron | 35.0% |
! | GAAAGGGAAATTTTAAACCC+CGG | + | chr1_2:41308589-41308608 | None:intergenic | 35.0% |
! | GGGTTTAAAATTTCCCTTTC+TGG | - | chr1_2:41308589-41308608 | Msa0070670:intron | 35.0% |
! | AATTTCCCTTTCTGGTAAAG+CGG | - | chr1_2:41308597-41308616 | Msa0070670:intron | 35.0% |
ATGGAACAACTTCTCATGAA+GGG | - | chr1_2:41308865-41308884 | Msa0070670:intron | 35.0% | |
TCACTTATAATCAATACCGG+AGG | - | chr1_2:41308956-41308975 | Msa0070670:intron | 35.0% | |
TGAACAAACAATACTTCCTC+CGG | + | chr1_2:41308975-41308994 | None:intergenic | 35.0% | |
TTCGAAAACTAATGAGTGGT+AGG | + | chr1_2:41309037-41309056 | None:intergenic | 35.0% | |
!!! | TACCACTCATTAGTTTTCGA+AGG | - | chr1_2:41309036-41309055 | Msa0070670:intron | 35.0% |
TTCCTTCGAAAACTAATGAG+TGG | + | chr1_2:41309041-41309060 | None:intergenic | 35.0% | |
!! | CATCATTTTTCAGATGGAAG+AGG | - | chr1_2:41309181-41309200 | Msa0070670:intron | 35.0% |
!! | TCATTTTTCAGATGGAAGAG+GGG | - | chr1_2:41309183-41309202 | Msa0070670:intron | 35.0% |
ACACATGCATAAAGAGATCA+TGG | - | chr1_2:41309310-41309329 | Msa0070670:CDS | 35.0% | |
AACACTGATGTACCATTGTT+TGG | + | chr1_2:41309379-41309398 | None:intergenic | 35.0% | |
! | ACAATGGTACATCAGTGTTT+TGG | - | chr1_2:41309380-41309399 | Msa0070670:CDS | 35.0% |
CAGTCATGATTATAGAAGGA+AGG | + | chr1_2:41309531-41309550 | None:intergenic | 35.0% | |
TCCTTCTATAATCATGACTG+TGG | - | chr1_2:41309531-41309550 | Msa0070670:intron | 35.0% | |
TGATTTCTCCTAAACATGGA+AGG | + | chr1_2:41309685-41309704 | None:intergenic | 35.0% | |
TCTCAGGGTTAAAAATGACA+AGG | + | chr1_2:41309749-41309768 | None:intergenic | 35.0% | |
GTGAGATTGTTCATTTCTCA+GGG | + | chr1_2:41309764-41309783 | None:intergenic | 35.0% | |
AGTGAGATTGTTCATTTCTC+AGG | + | chr1_2:41309765-41309784 | None:intergenic | 35.0% | |
ATCCCAATGCACACATTATA+TGG | - | chr1_2:41309799-41309818 | Msa0070670:intron | 35.0% | |
TAATGCAGTGGCAAAATTGA+AGG | - | chr1_2:41309827-41309846 | Msa0070670:intron | 35.0% | |
ACAAACCTTCATCAATGTCA+CGG | + | chr1_2:41309857-41309876 | None:intergenic | 35.0% | |
! | TCATTGAATGCTCTACGTTT+TGG | + | chr1_2:41309940-41309959 | None:intergenic | 35.0% |
! | ATCCTTTTCTATCCAGGTTA+TGG | + | chr1_2:41310067-41310086 | None:intergenic | 35.0% |
TAGAAAAGGATGCTTGTCTT+AGG | - | chr1_2:41310076-41310095 | Msa0070670:intron | 35.0% | |
CAAAATGACACCATTAAGCT+TGG | + | chr1_2:41310352-41310371 | None:intergenic | 35.0% | |
!!! | CAAGCTTAATGGTGTCATTT+TGG | - | chr1_2:41310350-41310369 | Msa0070670:intron | 35.0% |
ACCTATTAGGCAATCACTAA+GGG | + | chr1_2:41310468-41310487 | None:intergenic | 35.0% | |
TTAGTGATTGCCTAATAGGT+GGG | - | chr1_2:41310468-41310487 | Msa0070670:intron | 35.0% | |
AGAGTAGAAGAAACGCATAT+GGG | + | chr1_2:41310515-41310534 | None:intergenic | 35.0% | |
TGAAACGAAAATGCTTGTGA+CGG | - | chr1_2:41310544-41310563 | Msa0070670:intron | 35.0% | |
! | GAATGACTTACCATGGATTT+TGG | - | chr1_2:41310682-41310701 | Msa0070670:intron | 35.0% |
!!! | ACTTACCATGGATTTTGGTT+TGG | - | chr1_2:41310687-41310706 | Msa0070670:intron | 35.0% |
GAAAGAAAACAAGACATTGG+GGG | + | chr1_2:41310714-41310733 | None:intergenic | 35.0% | |
AGATTCAGTAGTTTCTTCTG+AGG | + | chr1_2:41310865-41310884 | None:intergenic | 35.0% | |
! | ATTGGTGATCTTGCTAAACT+TGG | - | chr1_2:41311201-41311220 | Msa0070670:intron | 35.0% |
CACCTGCAATTTAACAAAGA+TGG | + | chr1_2:41311505-41311524 | None:intergenic | 35.0% | |
ATGATCATGCAATTCAAGTG+TGG | + | chr1_2:41311891-41311910 | None:intergenic | 35.0% | |
GTGAAGTGGTTTAGTGAAAC+GGG | + | chr1_2:41306914-41306933 | None:intergenic | 40.0% | |
AGTCTCATTAATCATGCGAG+AGG | + | chr1_2:41307443-41307462 | None:intergenic | 40.0% | |
CTGTTTACTAGTGTAAGGTC+TGG | - | chr1_2:41307580-41307599 | Msa0070670:intron | 40.0% | |
!! | GTTTTCGTTACCTGTTTTGG+TGG | - | chr1_2:41307696-41307715 | Msa0070670:intron | 40.0% |
CAGCCTCTTGTGTAAAAAAC+AGG | - | chr1_2:41307828-41307847 | Msa0070670:intron | 40.0% | |
!!! | CTCCCTGTTTTTTACACAAG+AGG | + | chr1_2:41307834-41307853 | None:intergenic | 40.0% |
CTCTTGTGTAAAAAACAGGG+AGG | - | chr1_2:41307832-41307851 | Msa0070670:intron | 40.0% | |
TGTAAAAAACAGGGAGGGTA+AGG | - | chr1_2:41307838-41307857 | Msa0070670:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | - | chr1_2:41307864-41307883 | Msa0070670:intron | 40.0% | |
AGTCTGTATAAAGAGCAACC+CGG | + | chr1_2:41307930-41307949 | None:intergenic | 40.0% | |
TCAAATGCAAGTAGTCAACG+AGG | - | chr1_2:41307993-41308012 | Msa0070670:intron | 40.0% | |
CAAATGCAAGTAGTCAACGA+GGG | - | chr1_2:41307994-41308013 | Msa0070670:intron | 40.0% | |
CTCAGATAAAGGTCTCATCA+TGG | - | chr1_2:41308116-41308135 | Msa0070670:intron | 40.0% | |
CAGATAAAGGTCTCATCATG+GGG | - | chr1_2:41308118-41308137 | Msa0070670:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr1_2:41307864-41307883 | None:intergenic | 40.0% | |
ACCAGAAATTGCCCATCATA+GGG | + | chr1_2:41308438-41308457 | None:intergenic | 40.0% | |
! | GGTTCCTTTGAAAAGAGGTT+AGG | + | chr1_2:41308568-41308587 | None:intergenic | 40.0% |
! | AACCTCTTTTCAAAGGAACC+GGG | - | chr1_2:41308568-41308587 | Msa0070670:intron | 40.0% |
!! | TTGGCTTGCATGATCATATC+AGG | - | chr1_2:41308620-41308639 | Msa0070670:intron | 40.0% |
! | TATGTCAAGACTGTCACTTC+TGG | + | chr1_2:41308651-41308670 | None:intergenic | 40.0% |
AATCATCTCAGGTGTCAAAC+TGG | + | chr1_2:41308684-41308703 | None:intergenic | 40.0% | |
! | GACACCTGAGATGATTTTAG+AGG | - | chr1_2:41308688-41308707 | Msa0070670:intron | 40.0% |
!! | CTCACCTCTAAAATCATCTC+AGG | + | chr1_2:41308695-41308714 | None:intergenic | 40.0% |
CATGGAACAACTTCTCATGA+AGG | - | chr1_2:41308864-41308883 | Msa0070670:intron | 40.0% | |
TGCAATAAGTGCCTTTGTGA+AGG | + | chr1_2:41309228-41309247 | None:intergenic | 40.0% | |
CAATGCATTTCGCATTGAGT+TGG | - | chr1_2:41309416-41309435 | Msa0070670:CDS | 40.0% | |
GCCACAGTCATGATTATAGA+AGG | + | chr1_2:41309535-41309554 | None:intergenic | 40.0% | |
AAGCACAGTTGTCTCAAAAC+TGG | - | chr1_2:41309633-41309652 | Msa0070670:intron | 40.0% | |
! | TCTATGCGTGTGTACTTTTC+TGG | + | chr1_2:41309713-41309732 | None:intergenic | 40.0% |
GTCACAGTCTGACAACTTAA+TGG | - | chr1_2:41309998-41310017 | Msa0070670:intron | 40.0% | |
CAGTCTGACAACTTAATGGA+AGG | - | chr1_2:41310002-41310021 | Msa0070670:intron | 40.0% | |
ACAAAATCTGGTCCATAACC+TGG | - | chr1_2:41310052-41310071 | Msa0070670:intron | 40.0% | |
GTCCATAACCTGGATAGAAA+AGG | - | chr1_2:41310062-41310081 | Msa0070670:intron | 40.0% | |
! | ACAAGCATCCTTTTCTATCC+AGG | + | chr1_2:41310073-41310092 | None:intergenic | 40.0% |
!! | TAAAAGATGGGTTGGGAAAG+AGG | + | chr1_2:41310134-41310153 | None:intergenic | 40.0% |
! | ACGAAGCCTATAGTGTTGTT+TGG | - | chr1_2:41310239-41310258 | Msa0070670:intron | 40.0% |
CATGCACCAAACAACACTAT+AGG | + | chr1_2:41310248-41310267 | None:intergenic | 40.0% | |
GCTCTTTATGCCAAGCTTAA+TGG | - | chr1_2:41310339-41310358 | Msa0070670:intron | 40.0% | |
TTGGTCGTTGAATTTGCATC+TGG | - | chr1_2:41310369-41310388 | Msa0070670:intron | 40.0% | |
TGGTCGTTGAATTTGCATCT+GGG | - | chr1_2:41310370-41310389 | Msa0070670:intron | 40.0% | |
GTTGAATTTGCATCTGGGAA+AGG | - | chr1_2:41310375-41310394 | Msa0070670:intron | 40.0% | |
AATTTGCATCTGGGAAAGGT+TGG | - | chr1_2:41310379-41310398 | Msa0070670:intron | 40.0% | |
TCCCTTAGTGATTGCCTAAT+AGG | - | chr1_2:41310464-41310483 | Msa0070670:intron | 40.0% | |
CACCTATTAGGCAATCACTA+AGG | + | chr1_2:41310469-41310488 | None:intergenic | 40.0% | |
CTTAGTGATTGCCTAATAGG+TGG | - | chr1_2:41310467-41310486 | Msa0070670:intron | 40.0% | |
GAGAGTAGAAGAAACGCATA+TGG | + | chr1_2:41310516-41310535 | None:intergenic | 40.0% | |
GTTAGCTGTAAGGAGCTTAA+AGG | - | chr1_2:41311094-41311113 | Msa0070670:intron | 40.0% | |
TTCTGTTATCGCGTTGTGAT+TGG | - | chr1_2:41311183-41311202 | Msa0070670:intron | 40.0% | |
TAGAAGATAGCAGACCTAGA+TGG | - | chr1_2:41311424-41311443 | Msa0070670:intron | 40.0% | |
CGACGAGAACTATTGTTTCA+AGG | - | chr1_2:41311572-41311591 | Msa0070670:intron | 40.0% | |
TGAAACGGGAAGGAGCTAAA+CGG | + | chr1_2:41306900-41306919 | None:intergenic | 45.0% | |
AGTGGTTTAGTGAAACGGGA+AGG | + | chr1_2:41306910-41306929 | None:intergenic | 45.0% | |
AAAAGCGGGATGAGAGGTTA+GGG | + | chr1_2:41307128-41307147 | None:intergenic | 45.0% | |
AAAAATGCACCTGAGTGCGT+TGG | + | chr1_2:41307167-41307186 | None:intergenic | 45.0% | |
TTGCTCTCATCTCAACATCG+TGG | + | chr1_2:41307322-41307341 | None:intergenic | 45.0% | |
GTCTGATTCAGACAGTACAG+TGG | - | chr1_2:41307627-41307646 | Msa0070670:intron | 45.0% | |
ACAATGATGAGGGGTAACCT+TGG | - | chr1_2:41307747-41307766 | Msa0070670:intron | 45.0% | |
TCATGTGACTGGAAAGTCAC+AGG | - | chr1_2:41307790-41307809 | Msa0070670:intron | 45.0% | |
AAAGTCACAGGTTCAAGTCC+TGG | - | chr1_2:41307802-41307821 | Msa0070670:intron | 45.0% | |
! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_2:41307823-41307842 | None:intergenic | 45.0% |
GCTGCGTACAATACACCAAA+TGG | - | chr1_2:41307860-41307879 | Msa0070670:intron | 45.0% | |
GCGTACAATACACCAAATGG+TGG | - | chr1_2:41307863-41307882 | Msa0070670:intron | 45.0% | |
CTAAAGCTCCCAATTAGGCA+GGG | + | chr1_2:41307903-41307922 | None:intergenic | 45.0% | |
ACTAAAGCTCCCAATTAGGC+AGG | + | chr1_2:41307904-41307923 | None:intergenic | 45.0% | |
GTGCACTAAAGCTCCCAATT+AGG | + | chr1_2:41307908-41307927 | None:intergenic | 45.0% | |
! | AATTGGGAGCTTTAGTGCAC+CGG | - | chr1_2:41307908-41307927 | Msa0070670:intron | 45.0% |
!! | TGTGGTGTCTCTGAGATGTA+AGG | - | chr1_2:41308044-41308063 | Msa0070670:intron | 45.0% |
TAAAGGTCTCATCATGGGGT+TGG | - | chr1_2:41308122-41308141 | Msa0070670:intron | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr1_2:41307863-41307882 | None:intergenic | 45.0% | |
GCTGCGTACAATACACCAAA+TGG | + | chr1_2:41307860-41307879 | None:intergenic | 45.0% | |
! | TAACACAAGAGGCTGTTTCC+AGG | - | chr1_2:41308397-41308416 | Msa0070670:intron | 45.0% |
! | AACACAAGAGGCTGTTTCCA+GGG | - | chr1_2:41308398-41308417 | Msa0070670:intron | 45.0% |
GGGCTACACATAATAATCCC+TGG | + | chr1_2:41308418-41308437 | None:intergenic | 45.0% | |
GACCAGAAATTGCCCATCAT+AGG | + | chr1_2:41308439-41308458 | None:intergenic | 45.0% | |
!! | ATGATGGGCAATTTCTGGTC+TGG | - | chr1_2:41308439-41308458 | Msa0070670:intron | 45.0% |
! | ACCTCTTTTCAAAGGAACCG+GGG | - | chr1_2:41308569-41308588 | Msa0070670:intron | 45.0% |
GGTAGGCATCCGAGAAAAAA+GGG | + | chr1_2:41309020-41309039 | None:intergenic | 45.0% | |
TGGTAGGCATCCGAGAAAAA+AGG | + | chr1_2:41309021-41309040 | None:intergenic | 45.0% | |
!! | AAGAGGGGTTCAACTTGCTA+AGG | - | chr1_2:41309198-41309217 | Msa0070670:intron | 45.0% |
GCTAAGGAATGCCTTCACAA+AGG | - | chr1_2:41309214-41309233 | Msa0070670:intron | 45.0% | |
AGCATTTCCAACAGCAGCTT+CGG | + | chr1_2:41309496-41309515 | None:intergenic | 45.0% | |
ACCTTCATCAATGTCACGGA+GGG | + | chr1_2:41309853-41309872 | None:intergenic | 45.0% | |
AACCTTCATCAATGTCACGG+AGG | + | chr1_2:41309854-41309873 | None:intergenic | 45.0% | |
GTGCTTTGCTGCCAATCTTT+GGG | - | chr1_2:41310308-41310327 | Msa0070670:intron | 45.0% | |
AGCGTAACGAACCCAAAGAT+TGG | + | chr1_2:41310322-41310341 | None:intergenic | 45.0% | |
CTTTAGTGTGACTCCTCTAG+TGG | - | chr1_2:41310414-41310433 | Msa0070670:intron | 45.0% | |
ATGCAGCTAACCCACCTATT+AGG | + | chr1_2:41310481-41310500 | None:intergenic | 45.0% | |
! | CAGTCTGGGATTTACTTGGT+GGG | - | chr1_2:41310591-41310610 | Msa0070670:intron | 45.0% |
ACTCTTCACTAGCTAAAGCG+AGG | + | chr1_2:41310922-41310941 | None:intergenic | 45.0% | |
TCAGTACCATGCTACCATCT+AGG | + | chr1_2:41311441-41311460 | None:intergenic | 45.0% | |
CTGCTATATTGATGCCAGTC+TGG | - | chr1_2:41311538-41311557 | Msa0070670:intron | 45.0% | |
AATTGTAGTAGGTGCTCGCA+TGG | - | chr1_2:41311611-41311630 | Msa0070670:intron | 45.0% | |
!!! | ATTTTTATCTATTTATATAT+TGG | - | chr1_2:41310736-41310755 | Msa0070670:intron | 5.0% |
TCGGTGAGAGAGACTCGAAT+CGG | + | chr1_2:41306973-41306992 | None:intergenic | 50.0% | |
TGAGATCACCGGTAGGGATT+GGG | + | chr1_2:41307026-41307045 | None:intergenic | 50.0% | |
ATGAGATCACCGGTAGGGAT+TGG | + | chr1_2:41307027-41307046 | None:intergenic | 50.0% | |
TGTGGATGAGATCACCGGTA+GGG | + | chr1_2:41307032-41307051 | None:intergenic | 50.0% | |
AAGAGTAGCAAACGGGGTGA+GGG | + | chr1_2:41307092-41307111 | None:intergenic | 50.0% | |
CAAAAGCGGGATGAGAGGTT+AGG | + | chr1_2:41307129-41307148 | None:intergenic | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | + | chr1_2:41307767-41307786 | None:intergenic | 50.0% | |
! | ATTGGGAGCTTTAGTGCACC+GGG | - | chr1_2:41307909-41307928 | Msa0070670:intron | 50.0% |
TTCCTGGACGTTGTGTATGC+TGG | + | chr1_2:41308332-41308351 | None:intergenic | 50.0% | |
AGCATACACAACGTCCAGGA+AGG | - | chr1_2:41308331-41308350 | Msa0070670:intron | 50.0% | |
GCATACACAACGTCCAGGAA+GGG | - | chr1_2:41308332-41308351 | Msa0070670:intron | 50.0% | |
CATACACAACGTCCAGGAAG+GGG | - | chr1_2:41308333-41308352 | Msa0070670:intron | 50.0% | |
!! | GCCCTATGATGGGCAATTTC+TGG | - | chr1_2:41308434-41308453 | Msa0070670:intron | 50.0% |
! | ACCCCGGTTCCTTTGAAAAG+AGG | + | chr1_2:41308573-41308592 | None:intergenic | 50.0% |
! | TCCCTTTCTGGTAAAGCGGT+TGG | - | chr1_2:41308601-41308620 | Msa0070670:intron | 50.0% |
GCCAACCGCTTTACCAGAAA+GGG | + | chr1_2:41308605-41308624 | None:intergenic | 50.0% | |
AGCCAACCGCTTTACCAGAA+AGG | + | chr1_2:41308606-41308625 | None:intergenic | 50.0% | |
ATCTCAGGTGTCAAACTGGC+AGG | + | chr1_2:41308680-41308699 | None:intergenic | 50.0% | |
!! | GCATTTCGCATTGAGTTGGC+TGG | - | chr1_2:41309420-41309439 | Msa0070670:CDS | 50.0% |
!! | TTTCGCATTGAGTTGGCTGG+TGG | - | chr1_2:41309423-41309442 | Msa0070670:intron | 50.0% |
! | ATTGGCAGCAAAGCACCCAA+GGG | + | chr1_2:41310304-41310323 | None:intergenic | 50.0% |
GGTGCTTTGCTGCCAATCTT+TGG | - | chr1_2:41310307-41310326 | Msa0070670:intron | 50.0% | |
TCAAGTGCAGAGACCACTAG+AGG | + | chr1_2:41310430-41310449 | None:intergenic | 50.0% | |
TTGCTTTCGTACCTCCAGTC+TGG | - | chr1_2:41310576-41310595 | Msa0070670:intron | 50.0% | |
TGCTTTCGTACCTCCAGTCT+GGG | - | chr1_2:41310577-41310596 | Msa0070670:intron | 50.0% | |
CCAAGTAAATCCCAGACTGG+AGG | + | chr1_2:41310590-41310609 | None:intergenic | 50.0% | |
! | CCTCCAGTCTGGGATTTACT+TGG | - | chr1_2:41310587-41310606 | Msa0070670:intron | 50.0% |
CCACCAAGTAAATCCCAGAC+TGG | + | chr1_2:41310593-41310612 | None:intergenic | 50.0% | |
! | CCAGTCTGGGATTTACTTGG+TGG | - | chr1_2:41310590-41310609 | Msa0070670:intron | 50.0% |
GGGGACCAAACCAAAATCCA+TGG | + | chr1_2:41310695-41310714 | None:intergenic | 50.0% | |
AGCAGACCTAGATGGTAGCA+TGG | - | chr1_2:41311432-41311451 | Msa0070670:intron | 50.0% | |
! | ATAGTTCTCGTCGAGCATCG+CGG | + | chr1_2:41311565-41311584 | None:intergenic | 50.0% |
AGAGAGACTCGAATCGGAGG+TGG | + | chr1_2:41306967-41306986 | None:intergenic | 55.0% | |
GTGAGAGAGACTCGAATCGG+AGG | + | chr1_2:41306970-41306989 | None:intergenic | 55.0% | |
GATTGGGCGAGTTGCGAAGA+CGG | + | chr1_2:41307010-41307029 | None:intergenic | 55.0% | |
GTGTGGATGAGATCACCGGT+AGG | + | chr1_2:41307033-41307052 | None:intergenic | 55.0% | |
AGAGTAGCAAACGGGGTGAG+GGG | + | chr1_2:41307091-41307110 | None:intergenic | 55.0% | |
CAAGAGTAGCAAACGGGGTG+AGG | + | chr1_2:41307093-41307112 | None:intergenic | 55.0% | |
CGAGGCAAGAGTAGCAAACG+GGG | + | chr1_2:41307098-41307117 | None:intergenic | 55.0% | |
GCGAGGCAAGAGTAGCAAAC+GGG | + | chr1_2:41307099-41307118 | None:intergenic | 55.0% | |
GGCGAGGCAAGAGTAGCAAA+CGG | + | chr1_2:41307100-41307119 | None:intergenic | 55.0% | |
TTTGCTACTCTTGCCTCGCC+AGG | - | chr1_2:41307100-41307119 | Msa0070670:three_prime_UTR | 55.0% | |
GGGAACAAAAGCGGGATGAG+AGG | + | chr1_2:41307134-41307153 | None:intergenic | 55.0% | |
GCAAGGGTGGGAACAAAAGC+GGG | + | chr1_2:41307142-41307161 | None:intergenic | 55.0% | |
GGCAAGGGTGGGAACAAAAG+CGG | + | chr1_2:41307143-41307162 | None:intergenic | 55.0% | |
AATGCACCTGAGTGCGTTGG+TGG | + | chr1_2:41307164-41307183 | None:intergenic | 55.0% | |
AATTAGGCAGGGTCCGGGAA+GGG | + | chr1_2:41307892-41307911 | None:intergenic | 55.0% | |
TTCCCGGACCCTGCCTAATT+GGG | - | chr1_2:41307892-41307911 | Msa0070670:intron | 55.0% | |
! | TGCTGGAGCTTTAGTGCGCT+AGG | + | chr1_2:41308315-41308334 | None:intergenic | 55.0% |
CTCCAGCATACACAACGTCC+AGG | - | chr1_2:41308327-41308346 | Msa0070670:intron | 55.0% | |
GTAGAAGCCGAAGCTGCTGT+TGG | - | chr1_2:41309486-41309505 | Msa0070670:intron | 55.0% | |
GCCCTCCGTGACATTGATGA+AGG | - | chr1_2:41309849-41309868 | Msa0070670:intron | 55.0% | |
TAGACAGTGCAGCCACCCTT+GGG | - | chr1_2:41310286-41310305 | Msa0070670:intron | 55.0% | |
! | GATTGGCAGCAAAGCACCCA+AGG | + | chr1_2:41310305-41310324 | None:intergenic | 55.0% |
AATCGGAGGTGGTGAGGTGG+TGG | + | chr1_2:41306956-41306975 | None:intergenic | 60.0% | |
TCGAATCGGAGGTGGTGAGG+TGG | + | chr1_2:41306959-41306978 | None:intergenic | 60.0% | |
GACTCGAATCGGAGGTGGTG+AGG | + | chr1_2:41306962-41306981 | None:intergenic | 60.0% | |
!! | GTCTCTCTCACCGACTCCGT+AGG | - | chr1_2:41306979-41306998 | Msa0070670:three_prime_UTR | 60.0% |
GCAACTCGCCCAATCCCTAC+CGG | - | chr1_2:41307015-41307034 | Msa0070670:three_prime_UTR | 60.0% | |
GGCGGTGTGGATGAGATCAC+CGG | + | chr1_2:41307037-41307056 | None:intergenic | 60.0% | |
GGAAGGTGAAGGGTGGCAGA+CGG | + | chr1_2:41307067-41307086 | None:intergenic | 60.0% | |
GGTGAGGGGAGGAAGGTGAA+GGG | + | chr1_2:41307077-41307096 | None:intergenic | 60.0% | |
GGATGAGAGGTTAGGGAGCC+TGG | + | chr1_2:41307121-41307140 | None:intergenic | 60.0% | |
!! | AGTGCGTTGGTGGCAAGGGT+GGG | + | chr1_2:41307154-41307173 | None:intergenic | 60.0% |
!! | CCTGAGTGCGTTGGTGGCAA+GGG | + | chr1_2:41307158-41307177 | None:intergenic | 60.0% |
!! | ACCTGAGTGCGTTGGTGGCA+AGG | + | chr1_2:41307159-41307178 | None:intergenic | 60.0% |
AGGGGTAACCTTGGCGCAAC+TGG | - | chr1_2:41307756-41307775 | Msa0070670:intron | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_2:41307876-41307895 | Msa0070670:intron | 60.0% |
ATTAGGCAGGGTCCGGGAAG+GGG | + | chr1_2:41307891-41307910 | None:intergenic | 60.0% | |
CAATTAGGCAGGGTCCGGGA+AGG | + | chr1_2:41307893-41307912 | None:intergenic | 60.0% | |
CTTCCCGGACCCTGCCTAAT+TGG | - | chr1_2:41307891-41307910 | Msa0070670:intron | 60.0% | |
CTCCCAATTAGGCAGGGTCC+GGG | + | chr1_2:41307897-41307916 | None:intergenic | 60.0% | |
GCTCCCAATTAGGCAGGGTC+CGG | + | chr1_2:41307898-41307917 | None:intergenic | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+TGG | + | chr1_2:41307876-41307895 | None:intergenic | 60.0% |
CAGGAAGGGGTCCCACCATT+TGG | - | chr1_2:41308346-41308365 | Msa0070670:intron | 60.0% | |
!! | CGCATTGAGTTGGCTGGTGG+TGG | - | chr1_2:41309426-41309445 | Msa0070670:intron | 60.0% |
CTAGACAGTGCAGCCACCCT+TGG | - | chr1_2:41310285-41310304 | Msa0070670:intron | 60.0% | |
TGCGAAGACGGCGCGACCTA+CGG | + | chr1_2:41306998-41307017 | None:intergenic | 65.0% | |
AGGTGAAGGGTGGCAGACGG+CGG | + | chr1_2:41307064-41307083 | None:intergenic | 65.0% | |
GAGGGGAGGAAGGTGAAGGG+TGG | + | chr1_2:41307074-41307093 | None:intergenic | 65.0% | |
GGGTGAGGGGAGGAAGGTGA+AGG | + | chr1_2:41307078-41307097 | None:intergenic | 65.0% | |
CAAACGGGGTGAGGGGAGGA+AGG | + | chr1_2:41307084-41307103 | None:intergenic | 65.0% | |
GTAGCAAACGGGGTGAGGGG+AGG | + | chr1_2:41307088-41307107 | None:intergenic | 65.0% | |
AGAGGTTAGGGAGCCTGGCG+AGG | + | chr1_2:41307116-41307135 | None:intergenic | 65.0% | |
!! | GAGTGCGTTGGTGGCAAGGG+TGG | + | chr1_2:41307155-41307174 | None:intergenic | 65.0% |
CCCTTGCCACCAACGCACTC+AGG | - | chr1_2:41307155-41307174 | Msa0070670:three_prime_UTR | 65.0% | |
CGGGAAGGGGTCCCACCATT+TGG | + | chr1_2:41307878-41307897 | None:intergenic | 65.0% | |
! | GGCAGCAAAGCACCCAAGGG+TGG | + | chr1_2:41310301-41310320 | None:intergenic | 65.0% |
! | TCGAGCATCGCGGTCCAGAC+TGG | + | chr1_2:41311555-41311574 | None:intergenic | 65.0% |
GACGGCGCGACCTACGGAGT+CGG | + | chr1_2:41306992-41307011 | None:intergenic | 70.0% | |
! | AGGGTGGCAGACGGCGGGTT+CGG | + | chr1_2:41307058-41307077 | None:intergenic | 70.0% |
GGTGAAGGGTGGCAGACGGC+GGG | + | chr1_2:41307063-41307082 | None:intergenic | 70.0% | |
! | AGACGGCGGGTTCGGCGGTG+TGG | + | chr1_2:41307050-41307069 | None:intergenic | 75.0% |
! | GTGGCAGACGGCGGGTTCGG+CGG | + | chr1_2:41307055-41307074 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 41306817 | 41312017 | 41306817 | ID=Msa0070670;Name=Msa0070670 |
chr1_2 | mRNA | 41306817 | 41312017 | 41306817 | ID=Msa0070670-mRNA-1;Parent=Msa0070670;Name=Msa0070670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=57|0.66|0.71|1|0.83|1|7|377|310 |
chr1_2 | exon | 41306817 | 41307312 | 41306817 | ID=Msa0070670-mRNA-1:exon:12646;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41308964 | 41309035 | 41308964 | ID=Msa0070670-mRNA-1:exon:12645;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41309285 | 41309439 | 41309285 | ID=Msa0070670-mRNA-1:exon:12644;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41309540 | 41309640 | 41309540 | ID=Msa0070670-mRNA-1:exon:12643;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41310125 | 41310251 | 41310125 | ID=Msa0070670-mRNA-1:exon:12642;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41311465 | 41311520 | 41311465 | ID=Msa0070670-mRNA-1:exon:12641;Parent=Msa0070670-mRNA-1 |
chr1_2 | exon | 41311658 | 41312017 | 41311658 | ID=Msa0070670-mRNA-1:exon:12640;Parent=Msa0070670-mRNA-1 |
chr1_2 | five_prime_UTR | 41311961 | 41312017 | 41311961 | ID=Msa0070670-mRNA-1:five_prime_utr;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41311658 | 41311960 | 41311658 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41311465 | 41311520 | 41311465 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41310125 | 41310251 | 41310125 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41309540 | 41309640 | 41309540 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41309285 | 41309439 | 41309285 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41308964 | 41309035 | 41308964 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | CDS | 41307194 | 41307312 | 41307194 | ID=Msa0070670-mRNA-1:cds;Parent=Msa0070670-mRNA-1 |
chr1_2 | three_prime_UTR | 41306817 | 41307193 | 41306817 | ID=Msa0070670-mRNA-1:three_prime_utr;Parent=Msa0070670-mRNA-1 |
Gene Sequence |
Protein sequence |